AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057032

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057032.t1 MTR_2g100220 90.272 257 22 2 1 257 1 254 3.77e-163 452
MS.gene057032.t1 MTR_2g100220 91.235 251 19 2 1 251 1 248 1.13e-158 442
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057032.t1 AT1G55140 59.912 227 83 2 22 248 10 228 7.76e-86 256
MS.gene057032.t1 AT3G13740 58.850 226 82 2 23 248 10 224 2.57e-82 247
MS.gene057032.t1 AT3G13740 58.850 226 82 2 23 248 10 224 2.97e-81 245
MS.gene057032.t1 AT3G13740 71.812 149 42 0 100 248 1 149 2.97e-71 216
MS.gene057032.t1 AT3G13740 58.247 194 70 2 23 216 10 192 3.02e-67 207
MS.gene057032.t1 AT1G55140 56.886 167 64 2 22 188 10 168 3.15e-53 170
MS.gene057032.t1 AT3G13740 53.254 169 68 2 23 191 10 167 5.61e-52 167
MS.gene057032.t1 AT3G13740 52.941 153 61 2 23 175 10 151 1.94e-44 147

Find 43 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAACACGATGAAACCTATT+TGG 0.206219 2.1:+4494461 MS.gene057032:CDS
CTCGTCAATGCCTTTGAATT+TGG 0.238218 2.1:+4497868 MS.gene057032:CDS
CTAGGAGCGTTGCGGTTATA+AGG 0.245759 2.1:-4494282 None:intergenic
GCTGCTACCTTAGCTTATAT+TGG 0.304372 2.1:+4494543 MS.gene057032:CDS
AGAGAAGGAGATTGTGGTTT+TGG 0.333213 2.1:-4494321 None:intergenic
GAACGAGGTTTAACGACTTT+AGG 0.348737 2.1:-4494510 None:intergenic
CCTATTTGGGATATGATAGA+TGG 0.357513 2.1:+4494475 MS.gene057032:CDS
CAAGCAAAACTAAGACAAAA+AGG 0.357900 2.1:+4497299 MS.gene057032:CDS
TATTGGTGATTGCATTTATG+AGG 0.357917 2.1:+4494560 MS.gene057032:CDS
CCATCTATCATATCCCAAAT+AGG 0.385713 2.1:-4494475 None:intergenic
GTTTATCTTCTTCATTATCA+TGG 0.401690 2.1:+4494190 MS.gene057032:CDS
TAGGAGCGTTGCGGTTATAA+GGG 0.424850 2.1:-4494281 None:intergenic
AACCAGTAGTAAAAGCTTCA+TGG 0.429937 2.1:+4494241 MS.gene057032:CDS
GTCAATGCCTTTGAATTTGG+AGG 0.436135 2.1:+4497871 MS.gene057032:CDS
TTTCAATTTGGATGAAGAAA+AGG 0.442453 2.1:-4494220 None:intergenic
GAACACGATGAAACCTATTT+GGG 0.451212 2.1:+4494462 MS.gene057032:CDS
GCCACTCCACTTCCCACTAT+AGG 0.453060 2.1:+4494414 MS.gene057032:CDS
GATGAGCTGAACAGTGGATA+AGG 0.458530 2.1:+4498416 MS.gene057032:CDS
TTTGACAAATGTGAATCGCT+TGG 0.467151 2.1:+4497811 MS.gene057032:CDS
TCCTTACGGGTAGAAGGTGC+TGG 0.475784 2.1:-4494363 None:intergenic
GAAGTGAGAGAAGGAGATTG+TGG 0.483701 2.1:-4494327 None:intergenic
ATTGTATTCTTCAATACTCA+AGG 0.493781 2.1:-4495657 None:intergenic
TTTCAGGGATGTTCTTCGAT+GGG 0.502029 2.1:+4497261 MS.gene057032:intron
TTAACGACTTTAGGTGGAGC+TGG 0.505703 2.1:-4494501 None:intergenic
ATTTCAGGGATGTTCTTCGA+TGG 0.515754 2.1:+4497260 MS.gene057032:intron
ACCAGTAGTAAAAGCTTCAT+GGG 0.516338 2.1:+4494242 MS.gene057032:CDS
GCCTATAGTGGGAAGTGGAG+TGG 0.517281 2.1:-4494415 None:intergenic
ATTAATTCCTCCAAATTCAA+AGG 0.528573 2.1:-4497878 None:intergenic
GCAATCACCAATATAAGCTA+AGG 0.541049 2.1:-4494550 None:intergenic
CGAGGTTTAACGACTTTAGG+TGG 0.546922 2.1:-4494507 None:intergenic
AATTCATTCATCATCATGCA+AGG 0.547436 2.1:+4494168 None:intergenic
GAAGAAGAAGAAGTGAGAGA+AGG 0.563603 2.1:-4494336 None:intergenic
ACCAGCACCTTCTACCCGTA+AGG 0.574609 2.1:+4494362 MS.gene057032:CDS
TTCAGGGATGTTCTTCGATG+GGG 0.583400 2.1:+4497262 MS.gene057032:intron
ATTTCTTATCAGATCAAGAG+AGG 0.597984 2.1:+4496565 MS.gene057032:CDS
TATTCTTCAATACTCAAGGG+TGG 0.605648 2.1:-4495653 None:intergenic
TTGTATTCTTCAATACTCAA+GGG 0.608670 2.1:-4495656 None:intergenic
ACATGCAGCTATATGCTCGT+AGG 0.628628 2.1:+4495618 MS.gene057032:intron
AGCGAACAACTGCCATCACA+CGG 0.636186 2.1:-4495682 None:intergenic
AGTGGCGCGTTTGAGAAGAT+CGG 0.646185 2.1:-4494397 None:intergenic
TAGACAGATGAGCTGAACAG+TGG 0.652117 2.1:+4498410 MS.gene057032:intron
AGAATACAATGACCGTGTGA+TGG 0.681673 2.1:+4495670 MS.gene057032:CDS
GATGGCAGTTGTTCGCTGTG+AGG 0.703384 2.1:+4495688 MS.gene057032:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAGTTATTTTATTATGAT+TGG + chr2.1:4496027-4496046 MS.gene057032:intron 10.0%
!!! AAAGTTATTTTATTATGATT+GGG + chr2.1:4496028-4496047 MS.gene057032:intron 10.0%
!! AAAGTTATACAAATTAGATA+TGG - chr2.1:4495974-4495993 None:intergenic 15.0%
!! AAGTTATACAAATTAGATAT+GGG - chr2.1:4495973-4495992 None:intergenic 15.0%
!! AATATCAATTAAGAAACAAA+AGG - chr2.1:4496369-4496388 None:intergenic 15.0%
!! AGAAAATATTGTTATCAAAT+AGG + chr2.1:4495426-4495445 MS.gene057032:intron 15.0%
!! AGATAGCATTAAAATTAATA+AGG + chr2.1:4495067-4495086 MS.gene057032:intron 15.0%
!! ATATCAATTAAGAAACAAAA+GGG - chr2.1:4496368-4496387 None:intergenic 15.0%
!! ATTAGAGAATAATAAATACT+AGG - chr2.1:4494605-4494624 None:intergenic 15.0%
!! ATTTAAATTGAAAACAAAGT+AGG - chr2.1:4495736-4495755 None:intergenic 15.0%
!! TTAAAAAAGTTAGATAAGTA+AGG + chr2.1:4495841-4495860 MS.gene057032:intron 15.0%
!! TTTAAATTGAAAACAAAGTA+GGG - chr2.1:4495735-4495754 None:intergenic 15.0%
!! TTTCAATTTAAATTTACATG+CGG + chr2.1:4495743-4495762 MS.gene057032:intron 15.0%
!!! ACATTTCTTTAATTTTAAAG+TGG + chr2.1:4497440-4497459 MS.gene057032:intron 15.0%
!!! TCTAATTTGTATAACTTTAT+AGG + chr2.1:4495976-4495995 MS.gene057032:intron 15.0%
!!! TTGTTTCTTAATTGATATTT+TGG + chr2.1:4496370-4496389 MS.gene057032:intron 15.0%
!!! TTTTGATGAATTTTATTTCA+GGG + chr2.1:4497246-4497265 MS.gene057032:intron 15.0%
!! AAGATTTACATTTATATCAC+TGG - chr2.1:4497402-4497421 None:intergenic 20.0%
!! AATAACAAATAAAATCCAAC+AGG - chr2.1:4496444-4496463 None:intergenic 20.0%
!! AATCAAAATCGTAATACAAT+TGG - chr2.1:4495261-4495280 None:intergenic 20.0%
!! AATGACATAAAATAAAGTAG+AGG + chr2.1:4494794-4494813 MS.gene057032:intron 20.0%
!! AGAAGAAACTTCATTAAATA+TGG - chr2.1:4496650-4496669 None:intergenic 20.0%
!! ATAGTTTCAAATAAAAAGCA+CGG - chr2.1:4497002-4497021 None:intergenic 20.0%
!! CAAAAGGAATGTATATTAAA+TGG - chr2.1:4497667-4497686 None:intergenic 20.0%
!! CTTCATTAAATATGGAAAAT+AGG - chr2.1:4496642-4496661 None:intergenic 20.0%
!! GAAAAACTAATGTTAGAATT+GGG + chr2.1:4497833-4497852 MS.gene057032:CDS 20.0%
!!! AATGACTTATGCTTTAAATA+GGG + chr2.1:4496098-4496117 MS.gene057032:intron 20.0%
!!! CTTTTGATGAATTTTATTTC+AGG + chr2.1:4497245-4497264 MS.gene057032:intron 20.0%
!!! GAAATTTTTGTTATCTACAT+AGG + chr2.1:4498072-4498091 MS.gene057032:intron 20.0%
!!! GTTTTGTCAAATATAAGATT+TGG + chr2.1:4495501-4495520 MS.gene057032:intron 20.0%
!!! TAATGACTTATGCTTTAAAT+AGG + chr2.1:4496097-4496116 MS.gene057032:intron 20.0%
!!! TATATATTTTCCAAACTTTG+TGG + chr2.1:4495142-4495161 MS.gene057032:intron 20.0%
!!! TCCTATTTGTTATTTTCAAT+TGG + chr2.1:4494989-4495008 MS.gene057032:intron 20.0%
!!! TTTTTTCAACAACATATCAA+GGG + chr2.1:4495330-4495349 MS.gene057032:intron 20.0%
!!! TTTTTTTCAACAACATATCA+AGG + chr2.1:4495329-4495348 MS.gene057032:intron 20.0%
! AAAAAAAGCAAACATACTTC+TGG + chr2.1:4497099-4497118 MS.gene057032:intron 25.0%
! AAATAACAAATAGGATGCAA+AGG - chr2.1:4494984-4495003 None:intergenic 25.0%
! AAATAAGAAGATCTTTGAGT+TGG + chr2.1:4495028-4495047 MS.gene057032:intron 25.0%
! AAGTTTACAAAGAAGAGAAA+TGG - chr2.1:4496215-4496234 None:intergenic 25.0%
! AATAACAAATAGGATGCAAA+GGG - chr2.1:4494983-4495002 None:intergenic 25.0%
! ACACTATTTAATATCACAAG+AGG - chr2.1:4498101-4498120 None:intergenic 25.0%
! ACATAAAATAAAGTAGAGGA+AGG + chr2.1:4494798-4494817 MS.gene057032:intron 25.0%
! ACTGAAATAAGAAATACAAC+TGG + chr2.1:4498040-4498059 MS.gene057032:intron 25.0%
! AGTTTACAAAGAAGAGAAAT+GGG - chr2.1:4496214-4496233 None:intergenic 25.0%
! ATATCAAGGGAAAAATTGAT+AGG + chr2.1:4495343-4495362 MS.gene057032:intron 25.0%
! ATATGAAGATTTATCCTTGT+TGG + chr2.1:4496708-4496727 MS.gene057032:intron 25.0%
! ATCATGAGATAAACTCTATA+GGG - chr2.1:4496776-4496795 None:intergenic 25.0%
! ATTAACAAAACTTCCTTAGA+TGG + chr2.1:4498324-4498343 MS.gene057032:intron 25.0%
! ATTAATTCCTCCAAATTCAA+AGG - chr2.1:4497881-4497900 None:intergenic 25.0%
! ATTATTCCTATCAAACTATC+TGG - chr2.1:4497700-4497719 None:intergenic 25.0%
! ATTGTATTCTTCAATACTCA+AGG - chr2.1:4495660-4495679 None:intergenic 25.0%
! CATAAATCATGATTTACTTC+TGG - chr2.1:4496072-4496091 None:intergenic 25.0%
! GAAATTGCAAAATAATCATG+TGG - chr2.1:4497619-4497638 None:intergenic 25.0%
! GATACACATTGTAATTAGAT+TGG - chr2.1:4496492-4496511 None:intergenic 25.0%
! GCCAATTGAAAATAACAAAT+AGG - chr2.1:4494993-4495012 None:intergenic 25.0%
! GGAAAAACTAATGTTAGAAT+TGG + chr2.1:4497832-4497851 MS.gene057032:CDS 25.0%
! GGACTATTACTTTAAATTGT+AGG + chr2.1:4495108-4495127 MS.gene057032:intron 25.0%
! GTTTATCTTCTTCATTATCA+TGG + chr2.1:4494190-4494209 MS.gene057032:CDS 25.0%
! TAATTATTCGTACCAAACAA+AGG + chr2.1:4494621-4494640 MS.gene057032:intron 25.0%
! TATGAAGATTTATCCTTGTT+GGG + chr2.1:4496709-4496728 MS.gene057032:intron 25.0%
! TCTTAATTTCTATGACGATT+GGG + chr2.1:4494894-4494913 MS.gene057032:intron 25.0%
! TGTGATATTAAATAGTGTTC+TGG + chr2.1:4498103-4498122 MS.gene057032:intron 25.0%
! TTGTATTACATTACATGGTA+GGG + chr2.1:4498185-4498204 MS.gene057032:intron 25.0%
! TTGTATTCTTCAATACTCAA+GGG - chr2.1:4495659-4495678 None:intergenic 25.0%
! TTTCAATTTGGATGAAGAAA+AGG - chr2.1:4494223-4494242 None:intergenic 25.0%
!! AACACTTTTCAGATCATAAA+AGG - chr2.1:4497739-4497758 None:intergenic 25.0%
!! ATGACTTATGCTTTAAATAG+GGG + chr2.1:4496099-4496118 MS.gene057032:intron 25.0%
!! CAGAAGATTTTAAATTCGTA+AGG + chr2.1:4494724-4494743 MS.gene057032:intron 25.0%
!! CTTACGAATTTAAAATCTTC+TGG - chr2.1:4494726-4494745 None:intergenic 25.0%
!!! ACAAATTTTTGAGCTTATAG+CGG - chr2.1:4495483-4495502 None:intergenic 25.0%
!!! ATCTGGTTTTCAATTACAAA+AGG - chr2.1:4497683-4497702 None:intergenic 25.0%
!!! ATTTCAGTTTCTGTTATTTC+TGG - chr2.1:4498028-4498047 None:intergenic 25.0%
!!! CTTAATTGATATTTTGGTCA+AGG + chr2.1:4496376-4496395 MS.gene057032:intron 25.0%
!!! GTTAGAATATGTTACTTTCA+GGG + chr2.1:4496587-4496606 MS.gene057032:intron 25.0%
!!! TTTCAGTTTCTGTTATTTCT+GGG - chr2.1:4498027-4498046 None:intergenic 25.0%
!!! TTTTACTACTGGTTTCAATT+TGG - chr2.1:4494235-4494254 None:intergenic 25.0%
AAAACTTCCTTAGATGGAAT+GGG + chr2.1:4498330-4498349 MS.gene057032:intron 30.0%
AAGGAAAACAAAGCTAAATG+TGG + chr2.1:4495086-4495105 MS.gene057032:intron 30.0%
AGGAAAACAAAGCTAAATGT+GGG + chr2.1:4495087-4495106 MS.gene057032:intron 30.0%
ATCCTGCAAACAAACAAAAA+AGG - chr2.1:4496517-4496536 None:intergenic 30.0%
ATTCTAGTGCTAGTTCAATA+GGG + chr2.1:4497149-4497168 MS.gene057032:intron 30.0%
ATTTCTTATCAGATCAAGAG+AGG + chr2.1:4496565-4496584 MS.gene057032:CDS 30.0%
CAAGCAAAACTAAGACAAAA+AGG + chr2.1:4497299-4497318 MS.gene057032:CDS 30.0%
CTTGTATTACATTACATGGT+AGG + chr2.1:4498184-4498203 MS.gene057032:intron 30.0%
GATCATGAGATAAACTCTAT+AGG - chr2.1:4496777-4496796 None:intergenic 30.0%
GATCGAAACTTACTCTAATA+CGG + chr2.1:4497983-4498002 MS.gene057032:intron 30.0%
GTCTTAATTTCTATGACGAT+TGG + chr2.1:4494893-4494912 MS.gene057032:intron 30.0%
TAAATTTACATGCGGAAAGA+CGG + chr2.1:4495751-4495770 MS.gene057032:intron 30.0%
TAGTAAGTTCCTTCAAACTT+CGG + chr2.1:4497368-4497387 MS.gene057032:intron 30.0%
TATTCTAGTGCTAGTTCAAT+AGG + chr2.1:4497148-4497167 MS.gene057032:intron 30.0%
TGAAAACCAGATAGTTTGAT+AGG + chr2.1:4497691-4497710 MS.gene057032:intron 30.0%
TGCTTATTGAATTTCTCTTG+TGG - chr2.1:4496144-4496163 None:intergenic 30.0%
TTCTCTTCTTTGTAAACTTC+AGG + chr2.1:4496216-4496235 MS.gene057032:intron 30.0%
! CGGAAATGTAATTTTCCTTA+CGG - chr2.1:4494380-4494399 None:intergenic 30.0%
! GCTTTTGCAAATACAAACTT+AGG - chr2.1:4496249-4496268 None:intergenic 30.0%
! GGAAATGTAATTTTCCTTAC+GGG - chr2.1:4494379-4494398 None:intergenic 30.0%
! TATTGGTGATTGCATTTATG+AGG + chr2.1:4494560-4494579 MS.gene057032:CDS 30.0%
! TCTTCAATTTTGCCTATAGT+GGG - chr2.1:4494429-4494448 None:intergenic 30.0%
! TTCTTCAATTTTGCCTATAG+TGG - chr2.1:4494430-4494449 None:intergenic 30.0%
!! AACTTGCTAAATCCCAATTA+GGG - chr2.1:4495941-4495960 None:intergenic 30.0%
!! ATGTTCTGAAATCTGTGTTA+AGG + chr2.1:4496895-4496914 MS.gene057032:intron 30.0%
!! GGTTAGAATATGTTACTTTC+AGG + chr2.1:4496586-4496605 MS.gene057032:intron 30.0%
!! TAACTTGCTAAATCCCAATT+AGG - chr2.1:4495942-4495961 None:intergenic 30.0%
!!! AATTGATATTTTGGTCAAGG+AGG + chr2.1:4496379-4496398 MS.gene057032:intron 30.0%
AAACAAGAAGCAGCAGAAAA+TGG - chr2.1:4496340-4496359 None:intergenic 35.0%
AAATTTACATGCGGAAAGAC+GGG + chr2.1:4495752-4495771 MS.gene057032:intron 35.0%
AACCAGTAGTAAAAGCTTCA+TGG + chr2.1:4494241-4494260 MS.gene057032:CDS 35.0%
ACAAAATTGCAGTGAGCTAT+TGG + chr2.1:4494861-4494880 MS.gene057032:intron 35.0%
ACCAGTAGTAAAAGCTTCAT+GGG + chr2.1:4494242-4494261 MS.gene057032:CDS 35.0%
ACTCTCAGCATGATAAAAGT+TGG + chr2.1:4497181-4497200 MS.gene057032:intron 35.0%
AGAACACGATGAAACCTATT+TGG + chr2.1:4494461-4494480 MS.gene057032:CDS 35.0%
AGATTTCAGAACATCACACT+AGG - chr2.1:4496889-4496908 None:intergenic 35.0%
CAAAACTTCCTTAGATGGAA+TGG + chr2.1:4498329-4498348 MS.gene057032:intron 35.0%
CAACCTAGTTCAATAGACAT+TGG - chr2.1:4497781-4497800 None:intergenic 35.0%
CAATGTCTATTGAACTAGGT+TGG + chr2.1:4497779-4497798 MS.gene057032:intron 35.0%
CCATCTATCATATCCCAAAT+AGG - chr2.1:4494478-4494497 None:intergenic 35.0%
CTCTAATACGGCTGAAAAAT+AGG + chr2.1:4497995-4498014 MS.gene057032:intron 35.0%
CTGTCTAGAAGTTGAAAGAA+AGG - chr2.1:4498397-4498416 None:intergenic 35.0%
GAAAACTCTACCACAAAGTT+TGG - chr2.1:4495155-4495174 None:intergenic 35.0%
GAAATACAACTGGAGTGTAT+CGG + chr2.1:4498050-4498069 MS.gene057032:intron 35.0%
GAACACGATGAAACCTATTT+GGG + chr2.1:4494462-4494481 MS.gene057032:CDS 35.0%
GCAATCACCAATATAAGCTA+AGG - chr2.1:4494553-4494572 None:intergenic 35.0%
GTAGATAAGTTAACCGATAG+TGG + chr2.1:4494695-4494714 MS.gene057032:intron 35.0%
TAGCAGAATTGTGGCATAAT+TGG - chr2.1:4497130-4497149 None:intergenic 35.0%
TATCTCATGATCCTGAAAAC+AGG + chr2.1:4496785-4496804 MS.gene057032:intron 35.0%
TATTCTTCAATACTCAAGGG+TGG - chr2.1:4495656-4495675 None:intergenic 35.0%
TGTAATTCCCATTCCATCTA+AGG - chr2.1:4498340-4498359 None:intergenic 35.0%
TTCTAGTGCTAGTTCAATAG+GGG + chr2.1:4497150-4497169 MS.gene057032:intron 35.0%
TTTGACAAATGTGAATCGCT+TGG + chr2.1:4497811-4497830 MS.gene057032:CDS 35.0%
! AACTATGTCAGCTAGCTTAT+CGG - chr2.1:4494671-4494690 None:intergenic 35.0%
! ATGGAAAATAGGCGTGTTTT+GGG - chr2.1:4496631-4496650 None:intergenic 35.0%
! ATTTTCATCTGTCTCATGGT+TGG + chr2.1:4497032-4497051 MS.gene057032:intron 35.0%
! CCTATTTGGGATATGATAGA+TGG + chr2.1:4494475-4494494 MS.gene057032:CDS 35.0%
! GACTTTTGTGTAGAAATGTC+CGG + chr2.1:4496955-4496974 MS.gene057032:intron 35.0%
! TAATTTTCCTTACGGGTAGA+AGG - chr2.1:4494372-4494391 None:intergenic 35.0%
! TATGGAAAATAGGCGTGTTT+TGG - chr2.1:4496632-4496651 None:intergenic 35.0%
! TGAGATTTTCATCTGTCTCA+TGG + chr2.1:4497028-4497047 MS.gene057032:intron 35.0%
!!! GTCCTTTTTTGTTTGTTTGC+AGG + chr2.1:4496512-4496531 MS.gene057032:intron 35.0%
!!! TTTCTTATTTTCGCCCAACA+AGG - chr2.1:4496725-4496744 None:intergenic 35.0%
ACGCCAATGTCTATTGAACT+AGG + chr2.1:4497775-4497794 MS.gene057032:intron 40.0%
AGAACATCACACTAGGTTTC+AGG - chr2.1:4496882-4496901 None:intergenic 40.0%
AGAATACAATGACCGTGTGA+TGG + chr2.1:4495670-4495689 MS.gene057032:CDS 40.0%
AGACATTGGCGTTAGAAAAC+AGG - chr2.1:4497767-4497786 None:intergenic 40.0%
AGACTCATGTCACCCTAATT+GGG + chr2.1:4495926-4495945 MS.gene057032:intron 40.0%
AGCAGCAGAAAATGGTGATT+TGG - chr2.1:4496332-4496351 None:intergenic 40.0%
AGGGGAAAAAGACATCATTC+AGG + chr2.1:4496117-4496136 MS.gene057032:intron 40.0%
AGTTTCGATCAAAGTTCGAC+TGG - chr2.1:4497973-4497992 None:intergenic 40.0%
ATCGCAACAGAACCTTTGTT+TGG - chr2.1:4494636-4494655 None:intergenic 40.0%
ATTTCAGGGATGTTCTTCGA+TGG + chr2.1:4497260-4497279 MS.gene057032:intron 40.0%
CAGCAGAAAATGGTGATTTG+GGG - chr2.1:4496330-4496349 None:intergenic 40.0%
CATGATCCTGAAAACAGGAT+TGG + chr2.1:4496790-4496809 MS.gene057032:intron 40.0%
CTCGTCAATGCCTTTGAATT+TGG + chr2.1:4497868-4497887 MS.gene057032:CDS 40.0%
GAACGAGGTTTAACGACTTT+AGG - chr2.1:4494513-4494532 None:intergenic 40.0%
GAAGAAGAAGAAGTGAGAGA+AGG - chr2.1:4494339-4494358 None:intergenic 40.0%
GATGAGAAACCGAAGTTTGA+AGG - chr2.1:4497380-4497399 None:intergenic 40.0%
GCACTAGAATAGCAGAATTG+TGG - chr2.1:4497139-4497158 None:intergenic 40.0%
GCAGCAGAAAATGGTGATTT+GGG - chr2.1:4496331-4496350 None:intergenic 40.0%
GCAGCATTAAAAACAGAACG+AGG - chr2.1:4494528-4494547 None:intergenic 40.0%
GCTATCTACGACAACAATTG+AGG - chr2.1:4495054-4495073 None:intergenic 40.0%
GCTGCTACCTTAGCTTATAT+TGG + chr2.1:4494543-4494562 MS.gene057032:CDS 40.0%
GGGGAAAAAGACATCATTCA+GGG + chr2.1:4496118-4496137 MS.gene057032:intron 40.0%
GTCAATGCCTTTGAATTTGG+AGG + chr2.1:4497871-4497890 MS.gene057032:CDS 40.0%
GTTGCACAGTTAGCCATTAA+CGG + chr2.1:4497586-4497605 MS.gene057032:intron 40.0%
GTTTCGATCAAAGTTCGACT+GGG - chr2.1:4497972-4497991 None:intergenic 40.0%
TACTTTCTCTCACCTTGGTT+GGG + chr2.1:4495192-4495211 MS.gene057032:intron 40.0%
TAGACGAAACCAATAAGCAG+CGG + chr2.1:4497069-4497088 MS.gene057032:intron 40.0%
TTACATTACATGGTAGGGCA+AGG + chr2.1:4498190-4498209 MS.gene057032:intron 40.0%
TTCAAAACTCCGCTGCTTAT+TGG - chr2.1:4497081-4497100 None:intergenic 40.0%
TTTCAGGGATGTTCTTCGAT+GGG + chr2.1:4497261-4497280 MS.gene057032:intron 40.0%
! AATGTGAGTTTGACTTCAGC+CGG + chr2.1:4496408-4496427 MS.gene057032:intron 40.0%
! AGAACACCAATCCTGTTTTC+AGG - chr2.1:4496799-4496818 None:intergenic 40.0%
! AGAGAAGGAGATTGTGGTTT+TGG - chr2.1:4494324-4494343 None:intergenic 40.0%
! TCCCATGAAGCTTTTACTAC+TGG - chr2.1:4494246-4494265 None:intergenic 40.0%
! TGGAAAATAGGCGTGTTTTG+GGG - chr2.1:4496630-4496649 None:intergenic 40.0%
!! ATTTTGCCTATAGTGGGAAG+TGG - chr2.1:4494423-4494442 None:intergenic 40.0%
!! GGTGTTCTGAAATCTGTGTT+GGG + chr2.1:4496811-4496830 MS.gene057032:intron 40.0%
!! GTGTTCTGAAATCTGTGTTG+GGG + chr2.1:4496812-4496831 MS.gene057032:intron 40.0%
!! TCTTCTGGCTTATCCACTAT+CGG - chr2.1:4494711-4494730 None:intergenic 40.0%
!! TGGTGTTCTGAAATCTGTGT+TGG + chr2.1:4496810-4496829 MS.gene057032:intron 40.0%
!! TTGTTACTCTCTGAGACTTC+AGG + chr2.1:4494942-4494961 MS.gene057032:intron 40.0%
ACATGCAGCTATATGCTCGT+AGG + chr2.1:4495618-4495637 MS.gene057032:intron 45.0%
ACTTTCTCTCACCTTGGTTG+GGG + chr2.1:4495193-4495212 MS.gene057032:intron 45.0%
AGGGTGACATGAGTCTGAAA+TGG - chr2.1:4495922-4495941 None:intergenic 45.0%
AGTAGAGGAAGGAACCCTAT+TGG + chr2.1:4494809-4494828 MS.gene057032:intron 45.0%
AGTGTTCTGGTAGTACAAGC+TGG + chr2.1:4498116-4498135 MS.gene057032:intron 45.0%
ATATGTTTCCACCCCAACCA+AGG - chr2.1:4495207-4495226 None:intergenic 45.0%
ATTACATGGTAGGGCAAGGA+GGG + chr2.1:4498194-4498213 MS.gene057032:intron 45.0%
CAATAGAAAGCTGCAGTGCT+GGG - chr2.1:4497925-4497944 None:intergenic 45.0%
CAGACTCATGTCACCCTAAT+TGG + chr2.1:4495925-4495944 MS.gene057032:intron 45.0%
CGAGGTTTAACGACTTTAGG+TGG - chr2.1:4494510-4494529 None:intergenic 45.0%
CTGGTAGTACAGTATCTGTC+TGG - chr2.1:4498150-4498169 None:intergenic 45.0%
GAAGTGAGAGAAGGAGATTG+TGG - chr2.1:4494330-4494349 None:intergenic 45.0%
GCGACTTAAACTACCAGTTC+CGG - chr2.1:4496977-4496996 None:intergenic 45.0%
GGTTGGGGTGGAAACATATA+TGG + chr2.1:4495208-4495227 MS.gene057032:intron 45.0%
GTACTTTCTCTCACCTTGGT+TGG + chr2.1:4495191-4495210 MS.gene057032:intron 45.0%
GTCTGGATGTACTGCCAATA+GGG - chr2.1:4494826-4494845 None:intergenic 45.0%
GTGCATGCTGCAAAAATGTC+TGG - chr2.1:4494843-4494862 None:intergenic 45.0%
GTGTTCTGGTAGTACAAGCT+GGG + chr2.1:4498117-4498136 MS.gene057032:intron 45.0%
TAGACAGATGAGCTGAACAG+TGG + chr2.1:4498410-4498429 MS.gene057032:intron 45.0%
TATAGGGAGCAGTTCAAGAG+AGG - chr2.1:4496760-4496779 None:intergenic 45.0%
TCAATAGAAAGCTGCAGTGC+TGG - chr2.1:4497926-4497945 None:intergenic 45.0%
TCCAACAGGAAATCACTAGC+CGG - chr2.1:4496430-4496449 None:intergenic 45.0%
TGTCTGGATGTACTGCCAAT+AGG - chr2.1:4494827-4494846 None:intergenic 45.0%
TGTGTAGAAATGTCCGGAAC+TGG + chr2.1:4496961-4496980 MS.gene057032:intron 45.0%
TTAACGACTTTAGGTGGAGC+TGG - chr2.1:4494504-4494523 None:intergenic 45.0%
TTCAGGGATGTTCTTCGATG+GGG + chr2.1:4497262-4497281 MS.gene057032:intron 45.0%
! ACTAAGACAAAAAGGCGTGC+TGG + chr2.1:4497307-4497326 MS.gene057032:CDS 45.0%
! CCAAGGTGAGAGAAAGTACA+CGG - chr2.1:4495190-4495209 None:intergenic 45.0%
! GGGTGACATGAGTCTGAAAT+GGG - chr2.1:4495921-4495940 None:intergenic 45.0%
! GGTGGTTGAGTGAGTTTTCT+AGG - chr2.1:4494303-4494322 None:intergenic 45.0%
!! GGAAAATAGGCGTGTTTTGG+GGG - chr2.1:4496629-4496648 None:intergenic 45.0%
!! TAGGAGCGTTGCGGTTATAA+GGG - chr2.1:4494284-4494303 None:intergenic 45.0%
!!! GAAGGAGATTGTGGTTTTGG+TGG - chr2.1:4494321-4494340 None:intergenic 45.0%
!!! TGAGTTTTCTAGGAGCGTTG+CGG - chr2.1:4494293-4494312 None:intergenic 45.0%
!!! TGTCGCTTTTCGTGTGTTTG+AGG - chr2.1:4495375-4495394 None:intergenic 45.0%
AGCGAACAACTGCCATCACA+CGG - chr2.1:4495685-4495704 None:intergenic 50.0%
AGTGGCGCGTTTGAGAAGAT+CGG - chr2.1:4494400-4494419 None:intergenic 50.0%
CACAGTTAGCCATTAACGGC+TGG + chr2.1:4497590-4497609 MS.gene057032:intron 50.0%
CATTACATGGTAGGGCAAGG+AGG + chr2.1:4498193-4498212 MS.gene057032:intron 50.0%
CCGTGTACTTTCTCTCACCT+TGG + chr2.1:4495187-4495206 MS.gene057032:intron 50.0%
!! CTAGGAGCGTTGCGGTTATA+AGG - chr2.1:4494285-4494304 None:intergenic 50.0%
!!! AAATAGGCGTGTTTTGGGGG+AGG - chr2.1:4496626-4496645 None:intergenic 50.0%
ACCAGCACCTTCTACCCGTA+AGG + chr2.1:4494362-4494381 MS.gene057032:CDS 55.0%
ATGTGGCAGCCAGCCGTTAA+TGG - chr2.1:4497602-4497621 None:intergenic 55.0%
GATGGCAGTTGTTCGCTGTG+AGG + chr2.1:4495688-4495707 MS.gene057032:CDS 55.0%
GCCACTCCACTTCCCACTAT+AGG + chr2.1:4494414-4494433 MS.gene057032:CDS 55.0%
GCCGGCTAGTGATTTCCTGT+TGG + chr2.1:4496426-4496445 MS.gene057032:intron 55.0%
TTCTCTCACCTTGGTTGGGG+TGG + chr2.1:4495196-4495215 MS.gene057032:intron 55.0%
! GCCTATAGTGGGAAGTGGAG+TGG - chr2.1:4494418-4494437 None:intergenic 55.0%
! TCCTTACGGGTAGAAGGTGC+TGG - chr2.1:4494366-4494385 None:intergenic 55.0%
! AGAAAGCTGCAGTGCTGGGC+TGG - chr2.1:4497921-4497940 None:intergenic 60.0%
!!! AGGCGTGTTTTGGGGGAGGA+GGG - chr2.1:4496622-4496641 None:intergenic 60.0%
!!! TAGGCGTGTTTTGGGGGAGG+AGG - chr2.1:4496623-4496642 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 4494183 4498436 4494183 ID=MS.gene057032
chr2.1 mRNA 4494183 4498436 4494183 ID=MS.gene057032.t1;Parent=MS.gene057032
chr2.1 exon 4494183 4494581 4494183 ID=MS.gene057032.t1.exon1;Parent=MS.gene057032.t1
chr2.1 CDS 4494183 4494581 4494183 ID=cds.MS.gene057032.t1;Parent=MS.gene057032.t1
chr2.1 exon 4495626 4495715 4495626 ID=MS.gene057032.t1.exon2;Parent=MS.gene057032.t1
chr2.1 CDS 4495626 4495715 4495626 ID=cds.MS.gene057032.t1;Parent=MS.gene057032.t1
chr2.1 exon 4496534 4496586 4496534 ID=MS.gene057032.t1.exon3;Parent=MS.gene057032.t1
chr2.1 CDS 4496534 4496586 4496534 ID=cds.MS.gene057032.t1;Parent=MS.gene057032.t1
chr2.1 exon 4497267 4497369 4497267 ID=MS.gene057032.t1.exon4;Parent=MS.gene057032.t1
chr2.1 CDS 4497267 4497369 4497267 ID=cds.MS.gene057032.t1;Parent=MS.gene057032.t1
chr2.1 exon 4497797 4497901 4497797 ID=MS.gene057032.t1.exon5;Parent=MS.gene057032.t1
chr2.1 CDS 4497797 4497901 4497797 ID=cds.MS.gene057032.t1;Parent=MS.gene057032.t1
chr2.1 exon 4498413 4498436 4498413 ID=MS.gene057032.t1.exon6;Parent=MS.gene057032.t1
chr2.1 CDS 4498413 4498436 4498413 ID=cds.MS.gene057032.t1;Parent=MS.gene057032.t1
Gene Sequence

>MS.gene057032

ATGCAAGGTTTATCTTCTTCATTATCATGGTCAATAACCTTTTCTTCATCCAAATTGAAACCAGTAGTAAAAGCTTCATGGGACACACAACAAAGACTCCCTTATAACCGCAACGCTCCTAGAAAACTCACTCAACCACCAAAACCACAATCTCCTTCTCTCACTTCTTCTTCTTCTTCACCAGCACCTTCTACCCGTAAGGAAAATTACATTTCCGATCTTCTCAAACGCGCCACTCCACTTCCCACTATAGGCAAAATTGAAGAACAGCAACAACAAGAACACGATGAAACCTATTTGGGATATGATAGATGGCTTCCAGCTCCACCTAAAGTCGTTAAACCTCGTTCTGTTTTTAATGCTGCTACCTTAGCTTATATTGGTGATTGCATTTATGAGGTAACGTTCTATTCTTAATTCCTAGTATTTATTATTCTCTAATTATTCGTACCAAACAAAGGTTCTGTTGCGATAATTGCTGATAACCGATAAGCTAGCTGACATAGTTAATAGTAGATAAGTTAACCGATAGTGGATAAGCCAGAAGATTTTAAATTCGTAAGGTTTAGTAAAATTTGTTATTGAACTAGTCAACTAGCTGATGAATATGAAATGACATAAAATAAAGTAGAGGAAGGAACCCTATTGGCAGTACATCCAGACATTTTTGCAGCATGCACAAAATTGCAGTGAGCTATTGGTTTGTATTCGTCTTAATTTCTATGACGATTGGGAGCGTTTCTTCAAAGTCAAATCTTATTGTTACTCTCTGAGACTTCAGGCTCTCGAAGAGAAAGCCCTTTGCATCCTATTTGTTATTTTCAATTGGCGACTGAGTTTGTTTCAAATAAGAAGATCTTTGAGTTGGCCTCAATTGTTGTCGTAGATAGCATTAAAATTAATAAGGAAAACAAAGCTAAATGTGGGACTATTACTTTAAATTGTAGGAGTATTTTATTTATATATTTTCCAAACTTTGTGGTAGAGTTTTCTATGAGTGAAGTCCGTGTACTTTCTCTCACCTTGGTTGGGGTGGAAACATATATGGCTAGCTTTCAAAGTTATGATGAATATACCAATTGTATTACGATTTTGATTATTGATGATATGACATAATGTTTGTTTTGCAAAAAATTATCATTATTATTTTTTTCAACAACATATCAAGGGAAAAATTGATAGGCTATAACCTCAAACACACGAAAAGCGACATAAACTAGTAAAAAGAAGCTAAAAGCTCATGAGAAAATATTGTTATCAAATAGGTCTATCGTCGTTAGATGAGATTATAACATATCCGCTATAAGCTCAAAAATTTGTTTTGTCAAATATAAGATTTGGCTACTTGATGCTGTAAATTGTATTCATTAAAAAGTCTTGCAATTGTAATGATTTTGAGAAATATTTAGATATCTTATTCTAATTTTTTTGTGAAACATGCAGCTATATGCTCGTAGGCATTTTTTATTTCCACCCTTGAGTATTGAAGAATACAATGACCGTGTGATGGCAGTTGTTCGCTGTGAGGCTCAAGTATGATTACTTTCTTCCCTACTTTGTTTTCAATTTAAATTTACATGCGGAAAGACGGGCATAGCAGATTTCTATTGTGATTCATTGTGTATTAATCTTATCGTGTTTTGTTGTGTAATACTGATTTAAAAAAGTTAGATAAGTAAGGTGCTAGTTATTGTACAGTTGTACTGATTGTGATGATGACAATTTTATATTAATACCCATTTCAGACTCATGTCACCCTAATTGGGATTTAGCAAGTTATTTTTCATCCCATATCTAATTTGTATAACTTTATAGGCATGAGATTTGTTCAATAGTTTCTTTGAAAAAGTTATTTTATTATGATTGGGTTGTTGATCTTTTTGTCACCAGAAGTAAATCATGATTTATGTTAGTTAATGACTTATGCTTTAAATAGGGGAAAAAGACATCATTCAGGGCCACAAGAGAAATTCAATAAGCACATTTCATATTGAATTTTCATAATGAGATCATATAGTTAGCTTTTCTCCCATTTCTCTTCTTTGTAAACTTCAGGCGCTTTACCTAAGTTTGTATTTGCAAAAGCTTTTTCATTTTCTAAGTGACATACGCACACACTTTCTTTTCACTGCAAGTGTTTTTCTCCCCAAATCACCATTTTCTGCTGCTTCTTGTTTTTTTTCCCTTTTGTTTCTTAATTGATATTTTGGTCAAGGAGGCAAAACAATGTGAGTTTGACTTCAGCCGGCTAGTGATTTCCTGTTGGATTTTATTTGTTATTACTAATTAACAACAAAAACATGTTTCCAATCTAATTACAATGTGTATCGTCCTTTTTTGTTTGTTTGCAGGATGCATTGCTTCAGAAACTTCTGAACAGTGATTTCTTATCAGATCAAGAGAGGTTAGAATATGTTACTTTCAGGGTCTCATTATCCCTCCTCCCCCAAAACACGCCTATTTTCCATATTTAATGAAGTTTCTTCTTATAAAGATTCTGAAAAAAACAAGTGCACTTAAATTTCATATGAAGATTTATCCTTGTTGGGCGAAAATAAGAAAATGAATGTTCTGCCTCTCTTGAACTGCTCCCTATAGAGTTTATCTCATGATCCTGAAAACAGGATTGGTGTTCTGAAATCTGTGTTGGGGTTTTGTTAAATGAACAACTTGCAAGATGACTTTTGTTAAATGATCCTGAAACCTAGTGTGATGTTCTGAAATCTGTGTTAAGGTTTTGTTAAATGAACAACAGTGAACTGCTTGCAAGATGACTTTTGTGTAGAAATGTCCGGAACTGGTAGTTTAAGTCGCATCCGTGCTTTTTATTTGAAACTATATTTGATGAGATTTTCATCTGTCTCATGGTTGGTACATGATAATGATTAGACGAAACCAATAAGCAGCGGAGTTTTGAAAAAAAGCAAACATACTTCTGGATATGCCAATTATGCCACAATTCTGCTATTCTAGTGCTAGTTCAATAGGGGATTTAGACACTCTCAGCATGATAAAAGTTGGTAGATTGTGAGAGATCTGTTAATTTCTATCATAGCTTATAGCTTTTGATGAATTTTATTTCAGGGATGTTCTTCGATGGGGAAAGAACATTATTTCAAGCAAAACTAAGACAAAAAGGCGTGCTGGTGCAGCTGTGTATAACAGAGCGTCTTCATTAGAAACATTAGTAAGTTCCTTCAAACTTCGGTTTCTCATCCAGTGATATAAATGTAAATCTTTTAGCAAGTTTTGTTTCTACATTTCTTTAATTTTAAAGTGGTGATGACAACTGCAACTTTCTAATTTCATTAAATATTGATTTTAAATACAACTAATATAGTGCATGATATGTGTGTGTGTTCTATTACATATTAGTGTGAGTTTTTTATTTGTATATTTATATGTTGCACAGTTAGCCATTAACGGCTGGCTGCCACATGATTATTTTGCAATTTCAGCTTGATTGTGTGTTGCTCGATATCCATTTAATATACATTCCTTTTGTAATTGAAAACCAGATAGTTTGATAGGAATAATCTGAAACAAAGCATTTCCTTTTATGATCTGAAAAGTGTTTTCAGCCTGTTTTCTAACGCCAATGTCTATTGAACTAGGTTGGCTATCTCTATTTGACAAATGTGAATCGCTTGGAAAAACTAATGTTAGAATTGGGATTCTCAGTAGACTCGTCAATGCCTTTGAATTTGGAGGAATTAATAGTAAGTTTTATATCATCCAGCCCAGCACTGCAGCTTTCTATTGATTTTATTGTTTCATTTTTGCTCTCCCAGTCGAACTTTGATCGAAACTTACTCTAATACGGCTGAAAAATAGGAATTAACCCAGAAATAACAGAAACTGAAATAAGAAATACAACTGGAGTGTATCGGAAATTTTTGTTATCTACATAGGAGACCTCTTGTGATATTAAATAGTGTTCTGGTAGTACAAGCTGGGAGTACTACCAGACAGATACTGTACTACCAGACAGATACTCCCAACTTGTATTACATTACATGGTAGGGCAAGGAGGGAAAATTGATACAAGATTTTGTTGCAGCTATCGTGTATCAGCACATTTTAAATTATGAAAAGAATACTCAGTAGTCAGTTCTAGCAACAATTGTTATGTAATCTTAATATTAACAAAACTTCCTTAGATGGAATGGGAATTACAACTGTTAATTAATGTTTCACTTGCTAATATTTGTCCTTTCTTTCAACTTCTAGACAGATGAGCTGAACAGTGGATAA
Protein sequence

>MS.gene057032.t1

MQGLSSSLSWSITFSSSKLKPVVKASWDTQQRLPYNRNAPRKLTQPPKPQSPSLTSSSSSPAPSTRKENYISDLLKRATPLPTIGKIEEQQQQEHDETYLGYDRWLPAPPKVVKPRSVFNAATLAYIGDCIYELYARRHFLFPPLSIEEYNDRVMAVVRCEAQDALLQKLLNSDFLSDQERDVLRWGKNIISSKTKTKRRAGAAVYNRASSLETLVGYLYLTNVNRLEKLMLELGFSVDSSMPLNLEELITDELNSG