AlfalfaGEDB | MS.gene071943

M. sativa cultivar XinJiangDaYe / MS.gene071943

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00646.36 PF01344.28 PF13964.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071943.t1	XP_003593163.1	97.5	476	12	0	1	476	1	476	2.10E-270	941

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071943.t1	Q9LM55	57.0	481	196	5	1	476	1	475	7.1e-158	558.5

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071943.t1	G7INS5	97.5	476	12	0	1	476	1	476	1.5e-270	941.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049983	MS.gene071943	0.816691	4.85E-52	-1.69E-46
MS.gene050105	MS.gene071943	0.859128	5.12E-63	-1.69E-46
MS.gene050605	MS.gene071943	0.805082	1.58E-49	-1.69E-46
MS.gene051122	MS.gene071943	0.847692	9.84E-60	-1.69E-46
MS.gene051368	MS.gene071943	0.839841	1.24E-57	-1.69E-46
MS.gene052674	MS.gene071943	0.848648	5.36E-60	-1.69E-46
MS.gene052675	MS.gene071943	0.845833	3.17E-59	-1.69E-46
MS.gene052677	MS.gene071943	0.850071	2.15E-60	-1.69E-46
MS.gene052954	MS.gene071943	0.809171	2.16E-50	-1.69E-46
MS.gene054479	MS.gene071943	0.82783	1.26E-54	-1.69E-46
MS.gene055701	MS.gene071943	0.817688	2.90E-52	-1.69E-46
MS.gene057208	MS.gene071943	0.804112	2.53E-49	-1.69E-46
MS.gene058223	MS.gene071943	-0.807736	4.37E-50	-1.69E-46
MS.gene060011	MS.gene071943	0.803048	4.20E-49	-1.69E-46
MS.gene060850	MS.gene071943	0.826535	2.57E-54	-1.69E-46
MS.gene060851	MS.gene071943	0.841756	3.92E-58	-1.69E-46
MS.gene060852	MS.gene071943	0.840909	6.54E-58	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071943.t1	MTR_2g008440	97.479	476	12	0	1	476	1	476	0.0	955
MS.gene071943.t1	MTR_3g073640	60.394	457	173	3	25	476	25	478	0.0	573
MS.gene071943.t1	MTR_8g085600	27.917	480	250	19	10	475	39	436	2.66e-37	142
MS.gene071943.t1	MTR_4g114110	27.477	444	238	15	38	475	76	441	1.13e-36	140
MS.gene071943.t1	MTR_2g019230	27.635	351	173	11	43	384	52	330	4.98e-30	121
MS.gene071943.t1	MTR_8g080370	25.387	323	201	7	21	331	29	323	2.28e-25	107
MS.gene071943.t1	MTR_7g095220	31.004	229	122	6	41	269	2	194	4.14e-23	100
MS.gene071943.t1	MTR_8g030940	29.412	238	151	6	39	265	21	252	9.73e-22	97.1
MS.gene071943.t1	MTR_3g085570	25.067	371	204	13	38	407	30	327	1.28e-21	96.7
MS.gene071943.t1	MTR_3g108860	25.840	387	190	16	32	410	3	300	2.53e-20	92.4
MS.gene071943.t1	MTR_6g023805	24.474	380	208	13	44	414	57	366	3.17e-19	90.1
MS.gene071943.t1	MTR_4g108280	26.996	263	175	8	15	269	2	255	1.26e-16	82.0
MS.gene071943.t1	MTR_2g094093	25.292	257	174	7	37	284	14	261	1.00e-15	79.0
MS.gene071943.t1	MTR_4g022400	27.778	252	159	10	27	269	55	292	2.27e-15	78.2
MS.gene071943.t1	MTR_5g039390	23.743	358	190	13	39	387	125	408	4.69e-15	77.8
MS.gene071943.t1	MTR_8g468030	24.000	350	187	11	45	387	152	429	9.56e-15	76.6
MS.gene071943.t1	MTR_4g022260	25.311	241	158	9	39	269	67	295	7.86e-13	70.5
MS.gene071943.t1	MTR_0496s0010	24.481	241	160	9	39	269	67	295	1.07e-12	70.1
MS.gene071943.t1	MTR_7g029290	24.681	235	155	6	46	269	58	281	1.39e-12	69.7
MS.gene071943.t1	MTR_3g094850	24.026	308	176	13	40	332	6	270	5.55e-12	67.4
MS.gene071943.t1	MTR_3g083720	40.323	62	36	1	66	127	44	104	4.21e-11	61.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071943.t1	AT1G22040	57.796	481	192	5	1	476	1	475	0.0	539
MS.gene071943.t1	AT2G24540	24.939	409	233	9	43	448	28	365	1.95e-32	127
MS.gene071943.t1	AT1G30090	26.055	403	221	14	43	440	53	383	3.40e-29	119
MS.gene071943.t1	AT1G67480	27.676	383	196	15	33	411	30	335	5.23e-27	112
MS.gene071943.t1	AT1G67480	27.676	383	196	15	33	411	30	335	5.23e-27	112
MS.gene071943.t1	AT1G67480	27.676	383	196	15	33	411	30	335	5.23e-27	112
MS.gene071943.t1	AT1G55270	25.109	458	216	18	43	475	78	433	1.88e-26	111
MS.gene071943.t1	AT1G55270	27.387	398	182	17	93	475	2	307	3.85e-25	105
MS.gene071943.t1	AT3G27150	25.330	379	200	12	44	414	71	374	2.05e-22	99.8
MS.gene071943.t1	AT3G27150	25.330	379	200	12	44	414	71	374	2.05e-22	99.8
MS.gene071943.t1	AT3G61350	24.163	418	217	17	36	441	14	343	3.28e-21	95.1
MS.gene071943.t1	AT3G61350	24.163	418	217	17	36	441	14	343	3.28e-21	95.1
MS.gene071943.t1	AT3G63220	26.891	357	180	12	27	383	2	277	8.78e-21	94.0
MS.gene071943.t1	AT3G63220	26.891	357	180	12	27	383	2	277	8.78e-21	94.0
MS.gene071943.t1	AT3G63220	26.822	343	177	11	41	383	2	270	3.41e-20	92.0
MS.gene071943.t1	AT5G60570	25.575	348	187	9	43	390	49	324	1.14e-19	91.3
MS.gene071943.t1	AT5G60570	25.575	348	187	9	43	390	49	324	1.14e-19	91.3
MS.gene071943.t1	AT5G60570	25.575	348	187	9	43	390	49	324	1.14e-19	91.3
MS.gene071943.t1	AT1G26930	25.348	359	192	12	36	387	64	353	1.61e-18	88.2
MS.gene071943.t1	AT2G21950	24.599	374	202	12	41	410	18	315	3.33e-18	86.7
MS.gene071943.t1	AT2G02870	25.105	239	162	5	39	269	113	342	9.44e-16	79.7
MS.gene071943.t1	AT2G02870	25.105	239	162	5	39	269	113	342	9.44e-16	79.7
MS.gene071943.t1	AT2G02870	25.105	239	162	5	39	269	113	342	9.44e-16	79.7
MS.gene071943.t1	AT5G02980	28.261	230	109	5	41	267	11	187	1.17e-15	78.6
MS.gene071943.t1	AT4G39550	25.676	296	173	8	45	338	25	275	1.47e-15	79.0
MS.gene071943.t1	AT2G44130	26.073	303	177	10	37	327	13	280	1.49e-15	79.0
MS.gene071943.t1	AT4G39590	24.938	405	242	14	7	410	3	346	1.73e-15	78.6
MS.gene071943.t1	AT4G33900	28.205	234	129	8	47	274	15	215	1.05e-14	76.3
MS.gene071943.t1	AT1G14330	24.000	250	173	5	39	280	90	330	2.02e-14	75.5
MS.gene071943.t1	AT1G74510	27.149	221	145	7	56	269	108	319	8.37e-14	73.9
MS.gene071943.t1	AT1G74510	27.149	221	145	7	56	269	108	319	8.37e-14	73.9
MS.gene071943.t1	AT1G74510	27.149	221	145	7	56	269	108	319	8.37e-14	73.9
MS.gene071943.t1	AT1G60570	27.177	379	179	17	43	407	21	316	1.02e-13	73.2
MS.gene071943.t1	AT1G26930	24.903	257	152	6	36	270	64	301	1.14e-13	72.8
MS.gene071943.t1	AT5G49000	25.000	368	187	15	25	384	5	291	5.65e-12	67.8
MS.gene071943.t1	AT5G48980	26.357	258	160	6	10	267	2	229	1.29e-11	66.6
MS.gene071943.t1	AT5G03000	26.619	278	132	11	46	323	42	247	1.76e-11	65.9

Find 113 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAAAAGGCATGTTCGGTAAT+TGG	0.136696	2.4:-74612623	None:intergenic
TTTGTTCCTGCCTGCCTTGC+AGG	0.185589	2.4:-74612846	None:intergenic
CCTCCTAGCCTTTGCATTGC+TGG	0.210667	2.4:-74611851	None:intergenic
TAGACCCTATTTCCGGAAAA+TGG	0.230042	2.4:+74612169	MS.gene071943:CDS
TTATCATGAAATGGTTTATA+AGG	0.230061	2.4:+74612307	MS.gene071943:CDS
TGTTGAAGATGAAGCCAAAA+AGG	0.289060	2.4:+74612221	MS.gene071943:CDS
CTGAATCAGAGACAGAAATT+TGG	0.301990	2.4:+74613174	MS.gene071943:CDS
ATGATCCAGATATCAATTCT+TGG	0.305121	2.4:+74612790	MS.gene071943:CDS
CATTCTGTGGTTGCTCCATT+GGG	0.307220	2.4:+74612352	MS.gene071943:CDS
TTCCTCAGAGTTTGTATTGT+TGG	0.309237	2.4:+74612736	MS.gene071943:CDS
TATGCCTTAGACCCTATTTC+CGG	0.310619	2.4:+74612162	MS.gene071943:CDS
CCATTCTGTGGTTGCTCCAT+TGG	0.318701	2.4:+74612351	MS.gene071943:CDS
GATGGTTGCATCTATGCTTT+AGG	0.320547	2.4:+74612381	MS.gene071943:CDS
TCTCAACTATGCAAAGATTA+AGG	0.321504	2.4:+74612920	MS.gene071943:CDS
TGCTCCATTGGGGCTGTTGA+TGG	0.334044	2.4:+74612363	MS.gene071943:CDS
TCAAGCCAAGAATTGATATC+TGG	0.338982	2.4:-74612795	None:intergenic
ATGTTGTTGGAGGGGTTACT+AGG	0.349572	2.4:+74612535	MS.gene071943:CDS
GAAGGCGGCCCTTGCGAGTT+CGG	0.352706	2.4:+74612053	MS.gene071943:CDS
CCTGGCAAAATCTCACTTGC+TGG	0.355161	2.4:-74611880	None:intergenic
TCACAACATTGCAGTGTTGC+AGG	0.361566	2.4:+74613076	MS.gene071943:CDS
CTCCTAGCCTTTGCATTGCT+GGG	0.377402	2.4:-74611850	None:intergenic
TGATGGTTGGCCTGCAAGGC+AGG	0.382118	2.4:+74612836	MS.gene071943:CDS
AAAAGGCATGTTCGGTAATT+GGG	0.382188	2.4:-74612622	None:intergenic
CGTCGGATGTGGAGCATGTT+GGG	0.405380	2.4:+74612261	MS.gene071943:CDS
AACAATAAGCTATATGTTGT+TGG	0.406584	2.4:+74612522	MS.gene071943:CDS
GAATCTGCAAAATCATGAAT+AGG	0.410195	2.4:-74612990	None:intergenic
CTGCTATTCCCCGTCGGATG+TGG	0.410870	2.4:+74612250	MS.gene071943:CDS
TTGCTGATGTTATCATGAAA+TGG	0.419971	2.4:+74612298	MS.gene071943:CDS
TCGGTCCAAGAGTTGGTAAC+AGG	0.425587	2.4:-74612450	None:intergenic
TGTTGTTGGAGGGGTTACTA+GGG	0.426700	2.4:+74612536	MS.gene071943:CDS
CTGGCGATGACACCATTGAC+TGG	0.427412	2.4:-74613127	None:intergenic
GATTCAGCACATTCGCTCTC+TGG	0.429555	2.4:-74613146	None:intergenic
GAAGTCATTCCCGTAGCAAT+AGG	0.430690	2.4:-74612693	None:intergenic
TGGGTGATGGTTGGCCTGCA+AGG	0.435304	2.4:+74612832	MS.gene071943:CDS
TCAAGTCGGTTTCTCGTGCT+TGG	0.437300	2.4:+74612031	MS.gene071943:CDS
CTTCCGCTATGAAATCTGTT+TGG	0.449151	2.4:+74612418	MS.gene071943:CDS
ATGATCCTGTTACCAACTCT+TGG	0.461425	2.4:+74612445	MS.gene071943:CDS
ATTGTTGTCAACTTCTTATG+AGG	0.463564	2.4:+74611924	MS.gene071943:CDS
TGCCTCTTGCAAGCTTCACC+TGG	0.466451	2.4:-74611898	None:intergenic
GCTTGAAATGCCAGGTGGCA+TGG	0.469694	2.4:+74612812	MS.gene071943:CDS
GTCGGTTTCTCGTGCTTGGA+AGG	0.470952	2.4:+74612035	MS.gene071943:CDS
CCGTCGGATGTGGAGCATGT+TGG	0.478161	2.4:+74612260	MS.gene071943:CDS
ATCTGAGCTGATATCTCATC+AGG	0.480800	2.4:-74611973	None:intergenic
GTTTATAAGGAAAGATGCCT+TGG	0.481301	2.4:+74612320	MS.gene071943:CDS
GGTTGGCCTGCAAGGCAGGC+AGG	0.485358	2.4:+74612840	MS.gene071943:CDS
TTTAGCTTCGTCCCAGTCAA+TGG	0.487127	2.4:+74613115	MS.gene071943:CDS
GATACTTGGAAAGTTGTTGC+TGG	0.492215	2.4:+74612960	MS.gene071943:CDS
CGGTAATTGGGACCATGTAC+TGG	0.492594	2.4:-74612610	None:intergenic
CAGGTGGCATGGGTGATGGT+TGG	0.493790	2.4:+74612823	MS.gene071943:CDS
CCGCTATGAAATCTGTTTGG+CGG	0.494061	2.4:+74612421	MS.gene071943:CDS
GGGGTTACTAGGGGTCGTGG+TGG	0.495099	2.4:+74612546	MS.gene071943:CDS
ATGATGAGGAAGGTGATACT+TGG	0.495162	2.4:+74612946	MS.gene071943:CDS
GGTAGAGCTTACAGCAAGAC+AGG	0.496302	2.4:+74612492	MS.gene071943:CDS
GGTTGCATCTATGCTTTAGG+AGG	0.499828	2.4:+74612384	MS.gene071943:CDS
TTGCTCAAGCCTATTGCTAC+GGG	0.503972	2.4:+74612684	MS.gene071943:CDS
CAACCATCACCCATGCCACC+TGG	0.507207	2.4:-74612822	None:intergenic
GGAGGGGTTACTAGGGGTCG+TGG	0.509663	2.4:+74612543	MS.gene071943:CDS
AGTAAACTAGCTAAAAGATA+AGG	0.516003	2.4:-74613020	None:intergenic
CAACACTGCAATGTTGTGAT+TGG	0.517722	2.4:-74613072	None:intergenic
CTACGGGAATGACTTCATAC+AGG	0.527456	2.4:+74612700	MS.gene071943:CDS
CTTGAAATGCCAGGTGGCAT+GGG	0.528314	2.4:+74612813	MS.gene071943:CDS
AGATTCAAATAATGAATTCG+AGG	0.534463	2.4:-74612009	None:intergenic
TTTGCTCAAGCCTATTGCTA+CGG	0.538151	2.4:+74612683	MS.gene071943:CDS
AAAATAGTTCCGAACTCGCA+AGG	0.540298	2.4:-74612062	None:intergenic
AACTGACATTGGACTACCCT+CGG	0.550604	2.4:-74612469	None:intergenic
AATAAGCTATATGTTGTTGG+AGG	0.551125	2.4:+74612525	MS.gene071943:CDS
ATAAGCTATATGTTGTTGGA+GGG	0.557405	2.4:+74612526	MS.gene071943:CDS
GTTGCATCTATGCTTTAGGA+GGG	0.559792	2.4:+74612385	MS.gene071943:CDS
CAACATGCTCCACATCCGAC+GGG	0.561451	2.4:-74612259	None:intergenic
AAATAGTTCCGAACTCGCAA+GGG	0.561546	2.4:-74612061	None:intergenic
GCAACCATCAACAGCCCCAA+TGG	0.562619	2.4:-74612367	None:intergenic
TATACTTCTGCAGATAGAAG+TGG	0.562823	2.4:-74612576	None:intergenic
ATGCCAGGTGGCATGGGTGA+TGG	0.565824	2.4:+74612819	MS.gene071943:CDS
TAAGCTCTACCAACTGACAT+TGG	0.565929	2.4:-74612480	None:intergenic
AATTCTTGGCTTGAAATGCC+AGG	0.566468	2.4:+74612804	MS.gene071943:CDS
CCAATGGAGCAACCACAGAA+TGG	0.572414	2.4:-74612351	None:intergenic
TAAGCTATATGTTGTTGGAG+GGG	0.574613	2.4:+74612527	MS.gene071943:CDS
ATTAAGGTATATGATGAGGA+AGG	0.578412	2.4:+74612936	MS.gene071943:CDS
TCATTATTTGAATCTCAAGT+CGG	0.582208	2.4:+74612017	MS.gene071943:CDS
ATTCTGTGGTTGCTCCATTG+GGG	0.584965	2.4:+74612353	MS.gene071943:CDS
ATGATCCACACACCAGTACA+TGG	0.586621	2.4:+74612598	MS.gene071943:CDS
GAGCTGATATCTCATCAGGA+AGG	0.586837	2.4:-74611969	None:intergenic
AAATCAGCCAGAAAAGCAGT+TGG	0.588648	2.4:-74612663	None:intergenic
ATCAGAGACAGAAATTTGGA+AGG	0.589781	2.4:+74613178	MS.gene071943:CDS
GGTTTCTCGTGCTTGGAAGG+CGG	0.594864	2.4:+74612038	MS.gene071943:CDS
ACAGAATGGCATCTGATCCA+AGG	0.595293	2.4:-74612337	None:intergenic
AGCTGATATCTCATCAGGAA+GGG	0.597132	2.4:-74611968	None:intergenic
GAATGACTTCATACAGGGGA+AGG	0.600155	2.4:+74612706	MS.gene071943:CDS
TGTTACCAACTCTTGGACCG+AGG	0.601786	2.4:+74612452	MS.gene071943:CDS
TGGCGATGACACCATTGACT+GGG	0.602621	2.4:-74613126	None:intergenic
CTATTTCCGGAAAATGGCAA+AGG	0.603833	2.4:+74612175	MS.gene071943:CDS
GATATCTCATCAGGAAGGGA+AGG	0.603856	2.4:-74611964	None:intergenic
TTGGATCAGATGCCATTCTG+TGG	0.605348	2.4:+74612339	MS.gene071943:CDS
TACGGGAATGACTTCATACA+GGG	0.606631	2.4:+74612701	MS.gene071943:CDS
GTCCCAGCAATGCAAAGGCT+AGG	0.610222	2.4:+74611848	MS.gene071943:CDS
GTTACCAACTCTTGGACCGA+GGG	0.612294	2.4:+74612453	MS.gene071943:CDS
GTTTGGCTGCTATTCCCCGT+CGG	0.614890	2.4:+74612244	MS.gene071943:CDS
CCAGCAATGCAAAGGCTAGG+AGG	0.614924	2.4:+74611851	MS.gene071943:CDS
AAAGATTAAGGTATATGATG+AGG	0.617342	2.4:+74612932	MS.gene071943:CDS
AATCGGTCCCAGCAATGCAA+AGG	0.618805	2.4:+74611843	MS.gene071943:CDS
TGCCAGGTGAAGCTTGCAAG+AGG	0.619847	2.4:+74611896	MS.gene071943:CDS
CCAACATGCTCCACATCCGA+CGG	0.622597	2.4:-74612260	None:intergenic
GTTGTTGGAGGGGTTACTAG+GGG	0.624148	2.4:+74612537	MS.gene071943:CDS
ACTACCCTCGGTCCAAGAGT+TGG	0.627317	2.4:-74612457	None:intergenic
GAGGGTAGTCCAATGTCAGT+TGG	0.628852	2.4:+74612471	MS.gene071943:CDS
AACTTGGAACGACTGAAGAG+TGG	0.632366	2.4:+74612097	MS.gene071943:CDS
TGGGACCATGTACTGGTGTG+TGG	0.637703	2.4:-74612603	None:intergenic
GCATAGTTGAGAGAACTCGA+AGG	0.691816	2.4:-74612909	None:intergenic
AACATGCTCCACATCCGACG+GGG	0.700879	2.4:-74612258	None:intergenic
GGCCAACAATACAAACTCTG+AGG	0.706380	2.4:-74612738	None:intergenic
TCTTGGCTTGAAATGCCAGG+TGG	0.728358	2.4:+74612807	MS.gene071943:CDS
ACGGGAATGACTTCATACAG+GGG	0.766921	2.4:+74612702	MS.gene071943:CDS
CCGCCAAACAGATTTCATAG+CGG	0.782866	2.4:-74612421	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTATCATGAAATGGTTTATA+AGG	+	chr2.4:74612307-74612326	MS.gene071943:CDS	20.0%
!!!	TCAATGATAATAAGCTTTTT+TGG	+	chr2.4:74612139-74612158	MS.gene071943:CDS	20.0%
!	AAAGATTAAGGTATATGATG+AGG	+	chr2.4:74612932-74612951	MS.gene071943:CDS	25.0%
!	AACAATAAGCTATATGTTGT+TGG	+	chr2.4:74612522-74612541	MS.gene071943:CDS	25.0%
!	AGATTCAAATAATGAATTCG+AGG	-	chr2.4:74612012-74612031	None:intergenic	25.0%
!	AGTAAACTAGCTAAAAGATA+AGG	-	chr2.4:74613023-74613042	None:intergenic	25.0%
!	TCATCTTCAACAAAAACATT+TGG	-	chr2.4:74612213-74612232	None:intergenic	25.0%
!	TCATTATTTGAATCTCAAGT+CGG	+	chr2.4:74612017-74612036	MS.gene071943:CDS	25.0%
!!!	TATCTTTTAGCTAGTTTACT+TGG	+	chr2.4:74613023-74613042	MS.gene071943:CDS	25.0%
!!!	TTTTGTTTGAGAAAAGAACT+TGG	+	chr2.4:74612081-74612100	MS.gene071943:CDS	25.0%
	AATAAGCTATATGTTGTTGG+AGG	+	chr2.4:74612525-74612544	MS.gene071943:CDS	30.0%
	ATAAGCTATATGTTGTTGGA+GGG	+	chr2.4:74612526-74612545	MS.gene071943:CDS	30.0%
	ATGATCCAGATATCAATTCT+TGG	+	chr2.4:74612790-74612809	MS.gene071943:CDS	30.0%
	ATTAAGGTATATGATGAGGA+AGG	+	chr2.4:74612936-74612955	MS.gene071943:CDS	30.0%
	ATTGTTGTCAACTTCTTATG+AGG	+	chr2.4:74611924-74611943	MS.gene071943:CDS	30.0%
	GAATCTGCAAAATCATGAAT+AGG	-	chr2.4:74612993-74613012	None:intergenic	30.0%
	TCAACAAAAACATTTGGCAT+TGG	-	chr2.4:74612207-74612226	None:intergenic	30.0%
	TCTCAACTATGCAAAGATTA+AGG	+	chr2.4:74612920-74612939	MS.gene071943:CDS	30.0%
	TTGCTGATGTTATCATGAAA+TGG	+	chr2.4:74612298-74612317	MS.gene071943:CDS	30.0%
	ATCAGAGACAGAAATTTGGA+AGG	+	chr2.4:74613178-74613197	MS.gene071943:CDS	35.0%
	CTGAATCAGAGACAGAAATT+TGG	+	chr2.4:74613174-74613193	MS.gene071943:CDS	35.0%
	GTTGAAGATGAAGCCAAAAA+GGG	+	chr2.4:74612222-74612241	MS.gene071943:CDS	35.0%
	GTTTATAAGGAAAGATGCCT+TGG	+	chr2.4:74612320-74612339	MS.gene071943:CDS	35.0%
	TAAGCTATATGTTGTTGGAG+GGG	+	chr2.4:74612527-74612546	MS.gene071943:CDS	35.0%
	TATACTTCTGCAGATAGAAG+TGG	-	chr2.4:74612579-74612598	None:intergenic	35.0%
	TCAAGCCAAGAATTGATATC+TGG	-	chr2.4:74612798-74612817	None:intergenic	35.0%
	TGTTGAAGATGAAGCCAAAA+AGG	+	chr2.4:74612221-74612240	MS.gene071943:CDS	35.0%
	TTCCTCAGAGTTTGTATTGT+TGG	+	chr2.4:74612736-74612755	MS.gene071943:CDS	35.0%
!	AAAAGGCATGTTCGGTAATT+GGG	-	chr2.4:74612625-74612644	None:intergenic	35.0%
!	ACAAAAACATTTGGCATTGG+AGG	-	chr2.4:74612204-74612223	None:intergenic	35.0%
!!!	TTTGCCATTTTCCGGAAATA+GGG	-	chr2.4:74612176-74612195	None:intergenic	35.0%
	AAAATAGTTCCGAACTCGCA+AGG	-	chr2.4:74612065-74612084	None:intergenic	40.0%
	AAATAGTTCCGAACTCGCAA+GGG	-	chr2.4:74612064-74612083	None:intergenic	40.0%
	AAATCAGCCAGAAAAGCAGT+TGG	-	chr2.4:74612666-74612685	None:intergenic	40.0%
	AGATGAAGCCAAAAAGGGTT+TGG	+	chr2.4:74612227-74612246	MS.gene071943:CDS	40.0%
	AGCTGATATCTCATCAGGAA+GGG	-	chr2.4:74611971-74611990	None:intergenic	40.0%
	ATCTGAGCTGATATCTCATC+AGG	-	chr2.4:74611976-74611995	None:intergenic	40.0%
	ATGATCCTGTTACCAACTCT+TGG	+	chr2.4:74612445-74612464	MS.gene071943:CDS	40.0%
	ATGATGAGGAAGGTGATACT+TGG	+	chr2.4:74612946-74612965	MS.gene071943:CDS	40.0%
	CAACACTGCAATGTTGTGAT+TGG	-	chr2.4:74613075-74613094	None:intergenic	40.0%
	CCCCCAACATCAACAAAAAA+CGG	-	chr2.4:74612762-74612781	None:intergenic	40.0%
	CTATTTCCGGAAAATGGCAA+AGG	+	chr2.4:74612175-74612194	MS.gene071943:CDS	40.0%
	CTTCCGCTATGAAATCTGTT+TGG	+	chr2.4:74612418-74612437	MS.gene071943:CDS	40.0%
	GATACTTGGAAAGTTGTTGC+TGG	+	chr2.4:74612960-74612979	MS.gene071943:CDS	40.0%
	GATGGTTGCATCTATGCTTT+AGG	+	chr2.4:74612381-74612400	MS.gene071943:CDS	40.0%
	TAAGCTCTACCAACTGACAT+TGG	-	chr2.4:74612483-74612502	None:intergenic	40.0%
	TACGGGAATGACTTCATACA+GGG	+	chr2.4:74612701-74612720	MS.gene071943:CDS	40.0%
	TAGACCCTATTTCCGGAAAA+TGG	+	chr2.4:74612169-74612188	MS.gene071943:CDS	40.0%
	TATGCCTTAGACCCTATTTC+CGG	+	chr2.4:74612162-74612181	MS.gene071943:CDS	40.0%
	TTTGCTCAAGCCTATTGCTA+CGG	+	chr2.4:74612683-74612702	MS.gene071943:CDS	40.0%
!	AATAGCAGCCAAACCCTTTT+TGG	-	chr2.4:74612238-74612257	None:intergenic	40.0%
!	AATTCTTGGCTTGAAATGCC+AGG	+	chr2.4:74612804-74612823	MS.gene071943:CDS	40.0%
!	CAAAAGGCATGTTCGGTAAT+TGG	-	chr2.4:74612626-74612645	None:intergenic	40.0%
!	TTTGGAAGGTTTTCGCTTCT+AGG	+	chr2.4:74613192-74613211	MS.gene071943:CDS	40.0%
!	TTTTCCGGAAATAGGGTCTA+AGG	-	chr2.4:74612169-74612188	None:intergenic	40.0%
!!	GCTTTTGCAAAAGGCATGTT+CGG	-	chr2.4:74612633-74612652	None:intergenic	40.0%
!!	GTTGCATCTATGCTTTAGGA+GGG	+	chr2.4:74612385-74612404	MS.gene071943:CDS	40.0%
!!!	AGGTAACCTTTGCCATTTTC+CGG	-	chr2.4:74612184-74612203	None:intergenic	40.0%
!!!	CCGTTTTTTGTTGATGTTGG+GGG	+	chr2.4:74612759-74612778	MS.gene071943:CDS	40.0%
!!!	CTTTGCCATTTTCCGGAAAT+AGG	-	chr2.4:74612177-74612196	None:intergenic	40.0%
!!!	GCCGTTTTTTGTTGATGTTG+GGG	+	chr2.4:74612758-74612777	MS.gene071943:CDS	40.0%
!!!	GGCCGTTTTTTGTTGATGTT+GGG	+	chr2.4:74612757-74612776	MS.gene071943:CDS	40.0%
!!!	TGGCCGTTTTTTGTTGATGT+TGG	+	chr2.4:74612756-74612775	MS.gene071943:CDS	40.0%
	AACTGACATTGGACTACCCT+CGG	-	chr2.4:74612472-74612491	None:intergenic	45.0%
	AACTTGGAACGACTGAAGAG+TGG	+	chr2.4:74612097-74612116	MS.gene071943:CDS	45.0%
	ACAGAATGGCATCTGATCCA+AGG	-	chr2.4:74612340-74612359	None:intergenic	45.0%
	ACGGGAATGACTTCATACAG+GGG	+	chr2.4:74612702-74612721	MS.gene071943:CDS	45.0%
	ATGATCCACACACCAGTACA+TGG	+	chr2.4:74612598-74612617	MS.gene071943:CDS	45.0%
	ATGTTGTTGGAGGGGTTACT+AGG	+	chr2.4:74612535-74612554	MS.gene071943:CDS	45.0%
	ATTCTGTGGTTGCTCCATTG+GGG	+	chr2.4:74612353-74612372	MS.gene071943:CDS	45.0%
	CATTCTGTGGTTGCTCCATT+GGG	+	chr2.4:74612352-74612371	MS.gene071943:CDS	45.0%
	CCGCCAAACAGATTTCATAG+CGG	-	chr2.4:74612424-74612443	None:intergenic	45.0%
	CCGCTATGAAATCTGTTTGG+CGG	+	chr2.4:74612421-74612440	MS.gene071943:CDS	45.0%
	CTACGGGAATGACTTCATAC+AGG	+	chr2.4:74612700-74612719	MS.gene071943:CDS	45.0%
	GAAGTCATTCCCGTAGCAAT+AGG	-	chr2.4:74612696-74612715	None:intergenic	45.0%
	GAATGACTTCATACAGGGGA+AGG	+	chr2.4:74612706-74612725	MS.gene071943:CDS	45.0%
	GAGCTGATATCTCATCAGGA+AGG	-	chr2.4:74611972-74611991	None:intergenic	45.0%
	GATATCTCATCAGGAAGGGA+AGG	-	chr2.4:74611967-74611986	None:intergenic	45.0%
	GCATAGTTGAGAGAACTCGA+AGG	-	chr2.4:74612912-74612931	None:intergenic	45.0%
	GGCCAACAATACAAACTCTG+AGG	-	chr2.4:74612741-74612760	None:intergenic	45.0%
	TCACAACATTGCAGTGTTGC+AGG	+	chr2.4:74613076-74613095	MS.gene071943:CDS	45.0%
	TGTTGTTGGAGGGGTTACTA+GGG	+	chr2.4:74612536-74612555	MS.gene071943:CDS	45.0%
	TTGCTCAAGCCTATTGCTAC+GGG	+	chr2.4:74612684-74612703	MS.gene071943:CDS	45.0%
	TTGGATCAGATGCCATTCTG+TGG	+	chr2.4:74612339-74612358	MS.gene071943:CDS	45.0%
!	AGCACCTGAGCTTTTGCAAA+AGG	-	chr2.4:74612642-74612661	None:intergenic	45.0%
!	CATGCCTTTTGCAAAAGCTC+AGG	+	chr2.4:74612635-74612654	MS.gene071943:CDS	45.0%
!	GGTTGCATCTATGCTTTAGG+AGG	+	chr2.4:74612384-74612403	MS.gene071943:CDS	45.0%
!	TTTAGCTTCGTCCCAGTCAA+TGG	+	chr2.4:74613115-74613134	MS.gene071943:CDS	45.0%
!!	AAGGTTTTCGCTTCTAGGAG+TGG	+	chr2.4:74613197-74613216	MS.gene071943:CDS	45.0%
	AATCGGTCCCAGCAATGCAA+AGG	+	chr2.4:74611843-74611862	MS.gene071943:CDS	50.0%
	CCAATGGAGCAACCACAGAA+TGG	-	chr2.4:74612354-74612373	None:intergenic	50.0%
	CCATTCTGTGGTTGCTCCAT+TGG	+	chr2.4:74612351-74612370	MS.gene071943:CDS	50.0%
	CCTGGCAAAATCTCACTTGC+TGG	-	chr2.4:74611883-74611902	None:intergenic	50.0%
	CGGTAATTGGGACCATGTAC+TGG	-	chr2.4:74612613-74612632	None:intergenic	50.0%
	CTTGAAATGCCAGGTGGCAT+GGG	+	chr2.4:74612813-74612832	MS.gene071943:CDS	50.0%
	GAGGGTAGTCCAATGTCAGT+TGG	+	chr2.4:74612471-74612490	MS.gene071943:CDS	50.0%
	GATTCAGCACATTCGCTCTC+TGG	-	chr2.4:74613149-74613168	None:intergenic	50.0%
	GGTAGAGCTTACAGCAAGAC+AGG	+	chr2.4:74612492-74612511	MS.gene071943:CDS	50.0%
	GTTACCAACTCTTGGACCGA+GGG	+	chr2.4:74612453-74612472	MS.gene071943:CDS	50.0%
	GTTGTTGGAGGGGTTACTAG+GGG	+	chr2.4:74612537-74612556	MS.gene071943:CDS	50.0%
	TGTTACCAACTCTTGGACCG+AGG	+	chr2.4:74612452-74612471	MS.gene071943:CDS	50.0%
!	CCAGCAAGTGAGATTTTGCC+AGG	+	chr2.4:74611880-74611899	MS.gene071943:CDS	50.0%
!	CTCCTAGCCTTTGCATTGCT+GGG	-	chr2.4:74611853-74611872	None:intergenic	50.0%
!	TCAAGTCGGTTTCTCGTGCT+TGG	+	chr2.4:74612031-74612050	MS.gene071943:CDS	50.0%
!	TCTTGGCTTGAAATGCCAGG+TGG	+	chr2.4:74612807-74612826	MS.gene071943:CDS	50.0%
!	TGGCGATGACACCATTGACT+GGG	-	chr2.4:74613129-74613148	None:intergenic	50.0%
!!	TCGGTCCAAGAGTTGGTAAC+AGG	-	chr2.4:74612453-74612472	None:intergenic	50.0%
	AACATGCTCCACATCCGACG+GGG	-	chr2.4:74612261-74612280	None:intergenic	55.0%
	ACTACCCTCGGTCCAAGAGT+TGG	-	chr2.4:74612460-74612479	None:intergenic	55.0%
	CAACATGCTCCACATCCGAC+GGG	-	chr2.4:74612262-74612281	None:intergenic	55.0%
	CCAACATGCTCCACATCCGA+CGG	-	chr2.4:74612263-74612282	None:intergenic	55.0%
	CCAGCAATGCAAAGGCTAGG+AGG	+	chr2.4:74611851-74611870	MS.gene071943:CDS	55.0%
	CGTCGGATGTGGAGCATGTT+GGG	+	chr2.4:74612261-74612280	MS.gene071943:CDS	55.0%
	CTGGCGATGACACCATTGAC+TGG	-	chr2.4:74613130-74613149	None:intergenic	55.0%
	GCAACCATCAACAGCCCCAA+TGG	-	chr2.4:74612370-74612389	None:intergenic	55.0%
	GCTTGAAATGCCAGGTGGCA+TGG	+	chr2.4:74612812-74612831	MS.gene071943:CDS	55.0%
	GGTTTCTCGTGCTTGGAAGG+CGG	+	chr2.4:74612038-74612057	MS.gene071943:CDS	55.0%
	GTCCCAGCAATGCAAAGGCT+AGG	+	chr2.4:74611848-74611867	MS.gene071943:CDS	55.0%
	GTTTGGCTGCTATTCCCCGT+CGG	+	chr2.4:74612244-74612263	MS.gene071943:CDS	55.0%
	TGCCAGGTGAAGCTTGCAAG+AGG	+	chr2.4:74611896-74611915	MS.gene071943:CDS	55.0%
	TGCCTCTTGCAAGCTTCACC+TGG	-	chr2.4:74611901-74611920	None:intergenic	55.0%
	TGCTCCATTGGGGCTGTTGA+TGG	+	chr2.4:74612363-74612382	MS.gene071943:CDS	55.0%
	TTTGTTCCTGCCTGCCTTGC+AGG	-	chr2.4:74612849-74612868	None:intergenic	55.0%
!	CCTCCTAGCCTTTGCATTGC+TGG	-	chr2.4:74611854-74611873	None:intergenic	55.0%
!	GTCGGTTTCTCGTGCTTGGA+AGG	+	chr2.4:74612035-74612054	MS.gene071943:CDS	55.0%
!	TGGGACCATGTACTGGTGTG+TGG	-	chr2.4:74612606-74612625	None:intergenic	55.0%
!!	GGTGCTGCCAACTGCTTTTC+TGG	+	chr2.4:74612656-74612675	MS.gene071943:CDS	55.0%
	ATGCCAGGTGGCATGGGTGA+TGG	+	chr2.4:74612819-74612838	MS.gene071943:CDS	60.0%
	CAACCATCACCCATGCCACC+TGG	-	chr2.4:74612825-74612844	None:intergenic	60.0%
	CCGTCGGATGTGGAGCATGT+TGG	+	chr2.4:74612260-74612279	MS.gene071943:CDS	60.0%
	CTGCTATTCCCCGTCGGATG+TGG	+	chr2.4:74612250-74612269	MS.gene071943:CDS	60.0%
!	CAGGTGGCATGGGTGATGGT+TGG	+	chr2.4:74612823-74612842	MS.gene071943:CDS	60.0%
!!	TGATGGTTGGCCTGCAAGGC+AGG	+	chr2.4:74612836-74612855	MS.gene071943:CDS	60.0%
!!	TGGGTGATGGTTGGCCTGCA+AGG	+	chr2.4:74612832-74612851	MS.gene071943:CDS	60.0%
	GAAGGCGGCCCTTGCGAGTT+CGG	+	chr2.4:74612053-74612072	MS.gene071943:CDS	65.0%
	GGAGGGGTTACTAGGGGTCG+TGG	+	chr2.4:74612543-74612562	MS.gene071943:CDS	65.0%
	GGGGTTACTAGGGGTCGTGG+TGG	+	chr2.4:74612546-74612565	MS.gene071943:CDS	65.0%
!!	GGTTGGCCTGCAAGGCAGGC+AGG	+	chr2.4:74612840-74612859	MS.gene071943:CDS	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	74611832	74613262	74611832	ID=MS.gene071943
chr2.4	mRNA	74611832	74613262	74611832	ID=MS.gene071943.t1;Parent=MS.gene071943
chr2.4	exon	74611832	74613262	74611832	ID=MS.gene071943.t1.exon1;Parent=MS.gene071943.t1
chr2.4	CDS	74611832	74613262	74611832	ID=cds.MS.gene071943.t1;Parent=MS.gene071943.t1

Gene Sequence

>MS.gene071943

ATGGGGAATATAATCGGTCCCAGCAATGCAAAGGCTAGGAGGAGTGCTCCAGCAAGTGAGATTTTGCCAGGTGAAGCTTGCAAGAGGCAGAGATTGTTGTCAACTTCTTATGAGGATAATTCAAGACTGATTCCTTCCCTTCCTGATGAGATATCAGCTCAGATTCTCGCTAGAGTACCTCGAATTCATTATTTGAATCTCAAGTCGGTTTCTCGTGCTTGGAAGGCGGCCCTTGCGAGTTCGGAACTATTTTGTTTGAGAAAAGAACTTGGAACGACTGAAGAGTGGCTATACATATTAACAAAAGTCAATGATAATAAGCTTTTTTGGTATGCCTTAGACCCTATTTCCGGAAAATGGCAAAGGTTACCTCCAATGCCAAATGTTTTTGTTGAAGATGAAGCCAAAAAGGGTTTGGCTGCTATTCCCCGTCGGATGTGGAGCATGTTGGGTTCAAGTATCAAAATTGCTGATGTTATCATGAAATGGTTTATAAGGAAAGATGCCTTGGATCAGATGCCATTCTGTGGTTGCTCCATTGGGGCTGTTGATGGTTGCATCTATGCTTTAGGAGGGTTTTCTAAAGCTTCCGCTATGAAATCTGTTTGGCGGTATGATCCTGTTACCAACTCTTGGACCGAGGGTAGTCCAATGTCAGTTGGTAGAGCTTACAGCAAGACAGGTGTATTGAACAATAAGCTATATGTTGTTGGAGGGGTTACTAGGGGTCGTGGTGGATTGAATCCACTTCTATCTGCAGAAGTATATGATCCACACACCAGTACATGGTCCCAATTACCGAACATGCCTTTTGCAAAAGCTCAGGTGCTGCCAACTGCTTTTCTGGCTGATTTGCTCAAGCCTATTGCTACGGGAATGACTTCATACAGGGGAAGGCTGTTTGTTCCTCAGAGTTTGTATTGTTGGCCGTTTTTTGTTGATGTTGGGGGAGAAGTTTATGATCCAGATATCAATTCTTGGCTTGAAATGCCAGGTGGCATGGGTGATGGTTGGCCTGCAAGGCAGGCAGGAACAAAATTGAGTGTTACTGTCAATAATGATTTGTATGCACTAGATCCTTCGAGTTCTCTCAACTATGCAAAGATTAAGGTATATGATGAGGAAGGTGATACTTGGAAAGTTGTTGCTGGAGATGTTCCTATTCATGATTTTGCAGATTCAGAATCTCCTTATCTTTTAGCTAGTTTACTTGGAAAACTTCACGTGATAACTAAAGATGCCAATCACAACATTGCAGTGTTGCAGGCTAACATGCAAAATGATTTAGCTTCGTCCCAGTCAATGGTGTCATCGCCAGAGAGCGAATGTGCTGAATCATCTGCTGAATCAGAGACAGAAATTTGGAAGGTTTTCGCTTCTAGGAGTGGTAGATCTTCTGAGCTAGTTAGCTGTCAATCTCTTAAAGTGTGA

Protein sequence

>MS.gene071943.t1

MGNIIGPSNAKARRSAPASEILPGEACKRQRLLSTSYEDNSRLIPSLPDEISAQILARVPRIHYLNLKSVSRAWKAALASSELFCLRKELGTTEEWLYILTKVNDNKLFWYALDPISGKWQRLPPMPNVFVEDEAKKGLAAIPRRMWSMLGSSIKIADVIMKWFIRKDALDQMPFCGCSIGAVDGCIYALGGFSKASAMKSVWRYDPVTNSWTEGSPMSVGRAYSKTGVLNNKLYVVGGVTRGRGGLNPLLSAEVYDPHTSTWSQLPNMPFAKAQVLPTAFLADLLKPIATGMTSYRGRLFVPQSLYCWPFFVDVGGEVYDPDINSWLEMPGGMGDGWPARQAGTKLSVTVNNDLYALDPSSSLNYAKIKVYDEEGDTWKVVAGDVPIHDFADSESPYLLASLLGKLHVITKDANHNIAVLQANMQNDLASSQSMVSSPESECAESSAESETEIWKVFASRSGRSSELVSCQSLKV