Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072769.t1 | KEH27428.1 | 100 | 180 | 0 | 0 | 1 | 180 | 28 | 207 | 8.10E-74 | 286.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072769.t1 | Q9SW09 | 59.4 | 192 | 43 | 3 | 1 | 177 | 1 | 172 | 6.1e-46 | 185.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072769.t1 | A0A072UEC5 | 100.0 | 180 | 0 | 0 | 1 | 180 | 28 | 207 | 5.9e-74 | 286.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050281 | MS.gene072769 | 0.806598 | 7.61E-50 | -1.69E-46 |
| MS.gene050290 | MS.gene072769 | 0.875389 | 3.20E-68 | -1.69E-46 |
| MS.gene051904 | MS.gene072769 | 0.883318 | 4.97E-71 | -1.69E-46 |
| MS.gene056917 | MS.gene072769 | 0.817759 | 2.79E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072769 | MS.gene94561 | PPI |
| MS.gene047001 | MS.gene072769 | PPI |
| MS.gene072769 | MS.gene93753 | PPI |
| MS.gene072769 | MS.gene056722 | PPI |
| MS.gene072769 | MS.gene019556 | PPI |
| MS.gene072769 | MS.gene040115 | PPI |
| MS.gene072769 | MS.gene001756 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072769.t1 | MTR_5g010025 | 100.000 | 180 | 0 | 0 | 1 | 180 | 28 | 207 | 2.96e-130 | 363 |
| MS.gene072769.t1 | MTR_8g098850 | 93.889 | 180 | 8 | 1 | 1 | 180 | 1 | 177 | 2.73e-120 | 337 |
| MS.gene072769.t1 | MTR_8g098850 | 93.333 | 135 | 6 | 1 | 46 | 180 | 1 | 132 | 2.06e-83 | 242 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072769.t1 | AT4G25740 | 81.935 | 155 | 23 | 1 | 1 | 155 | 1 | 150 | 6.97e-80 | 235 |
| MS.gene072769.t1 | AT5G52650 | 80.000 | 155 | 30 | 1 | 1 | 155 | 1 | 154 | 1.75e-73 | 219 |
| MS.gene072769.t1 | AT5G41520 | 75.974 | 154 | 32 | 5 | 1 | 153 | 1 | 150 | 2.16e-70 | 211 |
| MS.gene072769.t1 | AT4G25740 | 63.277 | 177 | 32 | 1 | 1 | 177 | 1 | 144 | 5.82e-60 | 184 |
| MS.gene072769.t1 | AT5G41520 | 75.926 | 108 | 22 | 4 | 46 | 153 | 1 | 104 | 5.74e-43 | 140 |
Find 70 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGGACCTGCTGGTGAATT+TGG | 0.215916 | 5.3:+3780348 | MS.gene072769:CDS |
| AGATTTGGCACATCGATTTC+TGG | 0.226768 | 5.3:-3779958 | None:intergenic |
| AGCTTAATCACTTGCAGATT+TGG | 0.235590 | 5.3:-3779973 | None:intergenic |
| TGCAAAGAAGGATTTCAATT+TGG | 0.241273 | 5.3:+3779927 | MS.gene072769:CDS |
| TTGCTTGGATGAACTATTAC+TGG | 0.272334 | 5.3:+3780037 | MS.gene072769:CDS |
| GCTGACTACAGGCCTTCTTT+TGG | 0.293788 | 5.3:+3780393 | MS.gene072769:CDS |
| CCTGGCTTCGGTCGTGGTTC+TGG | 0.294525 | 5.3:+3781916 | MS.gene072769:CDS |
| TTTGATGGAGAAAGGAGATT+TGG | 0.304890 | 5.3:+3780294 | MS.gene072769:CDS |
| GGTCGTGGTTCTGGTGGCTT+TGG | 0.306704 | 5.3:+3781925 | MS.gene072769:CDS |
| CTCCTTTCTCCATCAAATCT+TGG | 0.337377 | 5.3:-3780288 | None:intergenic |
| AAGCCAGCTGGAAGGCCCTT+TGG | 0.353720 | 5.3:+3780147 | MS.gene072769:CDS |
| TGATGCAGAGCTTCAAATCT+AGG | 0.370024 | 5.3:+3779995 | MS.gene072769:CDS |
| TACTGGTTCCTTACCAATGA+TGG | 0.373159 | 5.3:+3780054 | MS.gene072769:CDS |
| AGGCCCTTTGGTGGTCCTCC+TGG | 0.384336 | 5.3:+3780159 | MS.gene072769:CDS |
| CAGGGCCCTGGTGGTAGACC+TGG | 0.396705 | 5.3:+3781898 | MS.gene072769:intron |
| GATTTGGCACATCGATTTCT+GGG | 0.410537 | 5.3:-3779957 | None:intergenic |
| TAAGCATCGTTTGAACTAGT+TGG | 0.424537 | 5.3:-3781952 | None:intergenic |
| GAGAAACTCAATTCCATCAT+TGG | 0.425707 | 5.3:-3780067 | None:intergenic |
| CCACCAAAGGGCCTTCCAGC+TGG | 0.433378 | 5.3:-3780150 | None:intergenic |
| ATGATGGAATTGAGTTTCTC+AGG | 0.441503 | 5.3:+3780070 | MS.gene072769:CDS |
| AATTCACCAGCAGGTCCTCT+TGG | 0.445100 | 5.3:-3780345 | None:intergenic |
| TCCTGCTACTTTGAAGAAGC+AGG | 0.450643 | 5.3:+3780122 | MS.gene072769:CDS |
| GCCTGCTTCTTCAAAGTAGC+AGG | 0.453311 | 5.3:-3780123 | None:intergenic |
| ATTCACCAGCAGGTCCTCTT+GGG | 0.458492 | 5.3:-3780344 | None:intergenic |
| CTGACTCTATTGCAGGGCCC+TGG | 0.459984 | 5.3:+3781886 | MS.gene072769:intron |
| AGGGGCCCACCAAGATTTGA+TGG | 0.462295 | 5.3:+3780279 | MS.gene072769:intron |
| GGGAGTTTGCTATGCAAAGA+AGG | 0.473090 | 5.3:+3779915 | MS.gene072769:CDS |
| CTTTCTCCATCAAATCTTGG+TGG | 0.474542 | 5.3:-3780285 | None:intergenic |
| AAGAAGCAGGCTAAGCCAGC+TGG | 0.479610 | 5.3:+3780135 | MS.gene072769:CDS |
| GGTAGACCTGGCTTCGGTCG+TGG | 0.484946 | 5.3:+3781910 | MS.gene072769:CDS |
| GATGGAGAAAGGAGATTTGG+TGG | 0.486392 | 5.3:+3780297 | MS.gene072769:CDS |
| GGCTTCGGTCGTGGTTCTGG+TGG | 0.490892 | 5.3:+3781919 | MS.gene072769:CDS |
| CAGGTCCTCTTGGGCCTCCA+CGG | 0.492606 | 5.3:-3780335 | None:intergenic |
| CACCAAGATTTGATGGAGAA+AGG | 0.498036 | 5.3:+3780286 | MS.gene072769:CDS |
| TTTCTCCATCAAATCTTGGT+GGG | 0.498924 | 5.3:-3780284 | None:intergenic |
| ATCACCAGGAGGACCACCAA+AGG | 0.501155 | 5.3:-3780163 | None:intergenic |
| CCAGCTGGAAGGCCCTTTGG+TGG | 0.502902 | 5.3:+3780150 | MS.gene072769:CDS |
| GTGGAGCTCCAGCTGACTAC+AGG | 0.506847 | 5.3:+3780382 | MS.gene072769:CDS |
| AAGATTATTACCCCAAAAGA+AGG | 0.511567 | 5.3:-3780405 | None:intergenic |
| CCTGGTGGTAGACCTGGCTT+CGG | 0.513224 | 5.3:+3781904 | MS.gene072769:CDS |
| TCTCCTCCAAATTCACCAGC+AGG | 0.516678 | 5.3:-3780354 | None:intergenic |
| AAAGAAGGCCTGTAGTCAGC+TGG | 0.516901 | 5.3:-3780390 | None:intergenic |
| GTCCTCCTGGTGATCGCCCT+AGG | 0.527814 | 5.3:+3780172 | MS.gene072769:CDS |
| GGACCTGCTGGTGAATTTGG+AGG | 0.530997 | 5.3:+3780351 | MS.gene072769:CDS |
| CCAGAACCACGACCGAAGCC+AGG | 0.533716 | 5.3:-3781916 | None:intergenic |
| CCGAAGCCAGGTCTACCACC+AGG | 0.539431 | 5.3:-3781904 | None:intergenic |
| ACTCAATTCCATCATTGGTA+AGG | 0.545851 | 5.3:-3780062 | None:intergenic |
| GGAGGCCCAAGAGGACCTGC+TGG | 0.551228 | 5.3:+3780339 | MS.gene072769:CDS |
| GGTATTTGCAGATCTCTCTA+CGG | 0.553257 | 5.3:-3779794 | None:intergenic |
| CACAAGACATACCTTGGAAG+AGG | 0.559210 | 5.3:-3779815 | None:intergenic |
| GTAATAGTTCATCCAAGCAA+AGG | 0.564306 | 5.3:-3780034 | None:intergenic |
| GTAGCAGGAACAATCTCAGA+TGG | 0.565512 | 5.3:-3780108 | None:intergenic |
| TCACCAGGAGGACCACCAAA+GGG | 0.567521 | 5.3:-3780162 | None:intergenic |
| ACTCTATTGCAGGGCCCTGG+TGG | 0.567801 | 5.3:+3781889 | MS.gene072769:intron |
| ATGTGAGGGAAACCTTTGCT+TGG | 0.569031 | 5.3:+3780022 | MS.gene072769:CDS |
| AGCAGGCTAAGCCAGCTGGA+AGG | 0.574627 | 5.3:+3780139 | MS.gene072769:CDS |
| AATTACCTAGGGCGATCACC+AGG | 0.586300 | 5.3:-3780177 | None:intergenic |
| GGCCTCCACGGTATCCATCA+CGG | 0.588978 | 5.3:-3780323 | None:intergenic |
| ATCTGCAAATACCTCTTCCA+AGG | 0.590451 | 5.3:+3779804 | MS.gene072769:CDS |
| GATGCAGAGCTTCAAATCTA+GGG | 0.604467 | 5.3:+3779996 | MS.gene072769:CDS |
| TCAAATCTAGGGAATATGTG+AGG | 0.607518 | 5.3:+3780007 | MS.gene072769:CDS |
| CAAATCTAGGGAATATGTGA+GGG | 0.609242 | 5.3:+3780008 | MS.gene072769:CDS |
| GGATACCGTGGAGGCCCAAG+AGG | 0.629598 | 5.3:+3780330 | MS.gene072769:CDS |
| AGATTTGGTGGTGACCGTGA+TGG | 0.637340 | 5.3:+3780309 | MS.gene072769:CDS |
| GGTGAATTTGGAGGAGACAA+AGG | 0.655884 | 5.3:+3780360 | MS.gene072769:CDS |
| GAATTTGGAGGAGACAAAGG+TGG | 0.658883 | 5.3:+3780363 | MS.gene072769:CDS |
| CGAAGCCAGGTCTACCACCA+GGG | 0.679017 | 5.3:-3781903 | None:intergenic |
| GACCGTGATGGATACCGTGG+AGG | 0.697879 | 5.3:+3780321 | MS.gene072769:CDS |
| GGTGACCGTGATGGATACCG+TGG | 0.715974 | 5.3:+3780318 | MS.gene072769:CDS |
| TACCTAGGGCGATCACCAGG+AGG | 0.726307 | 5.3:-3780174 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATATAAAAATTGAG+TGG | + | chr5.3:3781474-3781493 | MS.gene072769:intron | 10.0% |
| !! | AATAAATATAAAAATTGAGT+GGG | + | chr5.3:3781475-3781494 | MS.gene072769:intron | 10.0% |
| !!! | TTTTTTTATGTTTTGTTATT+TGG | + | chr5.3:3780227-3780246 | MS.gene072769:intron | 10.0% |
| !!! | TCTAAAATACATATAAACTT+GGG | + | chr5.3:3780752-3780771 | MS.gene072769:intron | 15.0% |
| !!! | TTCTAAAATACATATAAACT+TGG | + | chr5.3:3780751-3780770 | MS.gene072769:intron | 15.0% |
| !! | AACTTATATATATTGAGCAA+AGG | - | chr5.3:3780792-3780811 | None:intergenic | 20.0% |
| !! | AATTCCAAATTAATTACCTA+GGG | - | chr5.3:3780191-3780210 | None:intergenic | 20.0% |
| !! | ACTTATATATATTGAGCAAA+GGG | - | chr5.3:3780791-3780810 | None:intergenic | 20.0% |
| !! | TCAAATCAAAGATAATATTG+AGG | - | chr5.3:3780574-3780593 | None:intergenic | 20.0% |
| !!! | AAACTATTGTTATTTTTCAG+AGG | + | chr5.3:3779894-3779913 | MS.gene072769:intron | 20.0% |
| !!! | AACTATTGTTATTTTTCAGA+GGG | + | chr5.3:3779895-3779914 | MS.gene072769:intron | 20.0% |
| !!! | GATTTAGCTTTTGAAATATA+AGG | + | chr5.3:3781562-3781581 | MS.gene072769:intron | 20.0% |
| !!! | TTTAACTAGTTTAATAGAGT+TGG | + | chr5.3:3780945-3780964 | MS.gene072769:intron | 20.0% |
| !!! | TTTATGTTTTGTTATTTGGT+CGG | + | chr5.3:3780231-3780250 | MS.gene072769:intron | 20.0% |
| ! | ATTTGTTCAGAAAAAGAAAC+AGG | + | chr5.3:3781163-3781182 | MS.gene072769:intron | 25.0% |
| ! | CAATTCCAAATTAATTACCT+AGG | - | chr5.3:3780192-3780211 | None:intergenic | 25.0% |
| ! | CCAATAGAATTATATACATG+AGG | - | chr5.3:3781838-3781857 | None:intergenic | 25.0% |
| ! | CCTCATGTATATAATTCTAT+TGG | + | chr5.3:3781835-3781854 | MS.gene072769:intron | 25.0% |
| ! | CTCTAACTTACTTTGAATTA+TGG | + | chr5.3:3781733-3781752 | MS.gene072769:intron | 25.0% |
| ! | TTATTGTGTTGTGTTTGAAT+TGG | + | chr5.3:3779869-3779888 | MS.gene072769:intron | 25.0% |
| !!! | TTTTGGGGTAATAATCTTAT+TGG | + | chr5.3:3780410-3780429 | MS.gene072769:intron | 25.0% |
| !!! | TTTTGTTATGGTGTTTTATG+CGG | + | chr5.3:3780523-3780542 | MS.gene072769:intron | 25.0% |
| AAGATTATTACCCCAAAAGA+AGG | - | chr5.3:3780408-3780427 | None:intergenic | 30.0% | |
| ATAGTGTATACCAACTTGTA+GGG | - | chr5.3:3781708-3781727 | None:intergenic | 30.0% | |
| ATGTCTTGTGCAATAATCTA+GGG | + | chr5.3:3779828-3779847 | MS.gene072769:intron | 30.0% | |
| ATTATATACATGAGGAAAGC+AGG | - | chr5.3:3781830-3781849 | None:intergenic | 30.0% | |
| CACATAAAAATGAGTATGCT+TGG | + | chr5.3:3781140-3781159 | MS.gene072769:intron | 30.0% | |
| CACTTTACAGTAAGAAAGAA+TGG | + | chr5.3:3781219-3781238 | MS.gene072769:intron | 30.0% | |
| CAGAAGAATAAAACTTGATC+AGG | - | chr5.3:3781869-3781888 | None:intergenic | 30.0% | |
| GAGATAAGAGTAAGAAAGAA+TGG | + | chr5.3:3781241-3781260 | MS.gene072769:intron | 30.0% | |
| TAAAATTGGAATCGCGTAAA+TGG | - | chr5.3:3779732-3779751 | None:intergenic | 30.0% | |
| TATATGCAAAACAAGTGTAG+TGG | + | chr5.3:3780890-3780909 | MS.gene072769:intron | 30.0% | |
| TATGTCTTGTGCAATAATCT+AGG | + | chr5.3:3779827-3779846 | MS.gene072769:intron | 30.0% | |
| TGCAAAGAAGGATTTCAATT+TGG | + | chr5.3:3779927-3779946 | MS.gene072769:CDS | 30.0% | |
| TTTAGTAGATTATGTCTTGC+TGG | + | chr5.3:3781288-3781307 | MS.gene072769:intron | 30.0% | |
| ! | TTTAATAGAGTTGGTTCCAA+TGG | + | chr5.3:3780954-3780973 | MS.gene072769:intron | 30.0% |
| !! | ACGTTGTGTTTGTTATGATT+TGG | + | chr5.3:3780461-3780480 | MS.gene072769:intron | 30.0% |
| !! | ATTGTTCTATCCAAGTTGAT+AGG | + | chr5.3:3780980-3780999 | MS.gene072769:intron | 30.0% |
| !! | CAAGCATACTCATTTTTATG+TGG | - | chr5.3:3781142-3781161 | None:intergenic | 30.0% |
| !! | TGTTTTATGCGGGTTAATTT+TGG | + | chr5.3:3780534-3780553 | MS.gene072769:intron | 30.0% |
| !! | TTGTTCTATCCAAGTTGATA+GGG | + | chr5.3:3780981-3781000 | MS.gene072769:intron | 30.0% |
| !! | TTTGTTATGGTGTTTTATGC+GGG | + | chr5.3:3780524-3780543 | MS.gene072769:intron | 30.0% |
| AAGGAAATCGAGTCAATATG+AGG | - | chr5.3:3781601-3781620 | None:intergenic | 35.0% | |
| ACTCAATTCCATCATTGGTA+AGG | - | chr5.3:3780065-3780084 | None:intergenic | 35.0% | |
| AGCAATATACACAAGACACA+AGG | - | chr5.3:3780614-3780633 | None:intergenic | 35.0% | |
| AGCTTAATCACTTGCAGATT+TGG | - | chr5.3:3779976-3779995 | None:intergenic | 35.0% | |
| ATAAATACCCAGATTGAGAG+AGG | + | chr5.3:3781341-3781360 | MS.gene072769:intron | 35.0% | |
| ATCGCCCTAGGTAATTAATT+TGG | + | chr5.3:3780184-3780203 | MS.gene072769:intron | 35.0% | |
| ATTCTGCCCACAAAAACATT+CGG | + | chr5.3:3781065-3781084 | MS.gene072769:intron | 35.0% | |
| ATTCTTCTGACTCTATTGCA+GGG | + | chr5.3:3781880-3781899 | MS.gene072769:intron | 35.0% | |
| CAAATCTAGGGAATATGTGA+GGG | + | chr5.3:3780008-3780027 | MS.gene072769:CDS | 35.0% | |
| CATAGTGTATACCAACTTGT+AGG | - | chr5.3:3781709-3781728 | None:intergenic | 35.0% | |
| GAGAAACTCAATTCCATCAT+TGG | - | chr5.3:3780070-3780089 | None:intergenic | 35.0% | |
| GATACGATGATGATTCTGTT+CGG | + | chr5.3:3780496-3780515 | MS.gene072769:intron | 35.0% | |
| GCAATATACACAAGACACAA+GGG | - | chr5.3:3780613-3780632 | None:intergenic | 35.0% | |
| GTAATAGTTCATCCAAGCAA+AGG | - | chr5.3:3780037-3780056 | None:intergenic | 35.0% | |
| TATTCTTCTGACTCTATTGC+AGG | + | chr5.3:3781879-3781898 | MS.gene072769:intron | 35.0% | |
| TATTTGGTCGGTTGATTGAA+TGG | + | chr5.3:3780243-3780262 | MS.gene072769:intron | 35.0% | |
| TCAAAAGCTAAATCCAGTTG+TGG | - | chr5.3:3781556-3781575 | None:intergenic | 35.0% | |
| TCAAATCTAGGGAATATGTG+AGG | + | chr5.3:3780007-3780026 | MS.gene072769:CDS | 35.0% | |
| TCTCTTGGATAAAGTAGCAA+AGG | + | chr5.3:3781402-3781421 | MS.gene072769:intron | 35.0% | |
| TGGATAGAACAATGAACCAT+TGG | - | chr5.3:3780973-3780992 | None:intergenic | 35.0% | |
| TTATTGCACAAGACATACCT+TGG | - | chr5.3:3779824-3779843 | None:intergenic | 35.0% | |
| TTGCTTGGATGAACTATTAC+TGG | + | chr5.3:3780037-3780056 | MS.gene072769:CDS | 35.0% | |
| TTTCTCCATCAAATCTTGGT+GGG | - | chr5.3:3780287-3780306 | None:intergenic | 35.0% | |
| TTTGATGGAGAAAGGAGATT+TGG | + | chr5.3:3780294-3780313 | MS.gene072769:CDS | 35.0% | |
| ! | ATGATGGAATTGAGTTTCTC+AGG | + | chr5.3:3780070-3780089 | MS.gene072769:CDS | 35.0% |
| ! | CTGTTCGGTTCATTTTGTTA+TGG | + | chr5.3:3780511-3780530 | MS.gene072769:intron | 35.0% |
| ! | GCGTAAATGGATTCAAAGAA+TGG | - | chr5.3:3779719-3779738 | None:intergenic | 35.0% |
| ! | TAAGCATCGTTTGAACTAGT+TGG | - | chr5.3:3781955-3781974 | None:intergenic | 35.0% |
| !! | AATGTTTTTGTGGGCAGAAT+TGG | - | chr5.3:3781065-3781084 | None:intergenic | 35.0% |
| !! | ACAAAAACATTCGGTTTTGG+AGG | + | chr5.3:3781074-3781093 | MS.gene072769:intron | 35.0% |
| !! | ATGTTTTTGTGGGCAGAATT+GGG | - | chr5.3:3781064-3781083 | None:intergenic | 35.0% |
| !! | CCAAAACCGAATGTTTTTGT+GGG | - | chr5.3:3781074-3781093 | None:intergenic | 35.0% |
| !! | TCCAAAACCGAATGTTTTTG+TGG | - | chr5.3:3781075-3781094 | None:intergenic | 35.0% |
| !!! | AATGGAATGTGTTTTGACAG+GGG | + | chr5.3:3780261-3780280 | MS.gene072769:intron | 35.0% |
| !!! | CAAAAACATTCGGTTTTGGA+GGG | + | chr5.3:3781075-3781094 | MS.gene072769:intron | 35.0% |
| !!! | GAATGGAATGTGTTTTGACA+GGG | + | chr5.3:3780260-3780279 | MS.gene072769:intron | 35.0% |
| !!! | TGAATGGAATGTGTTTTGAC+AGG | + | chr5.3:3780259-3780278 | MS.gene072769:intron | 35.0% |
| AAATTGAGTGGGACATTGCT+TGG | + | chr5.3:3781486-3781505 | MS.gene072769:intron | 40.0% | |
| AGTCAATATGAGGTGATTCG+AGG | - | chr5.3:3781591-3781610 | None:intergenic | 40.0% | |
| ATCTGCAAATACCTCTTCCA+AGG | + | chr5.3:3779804-3779823 | MS.gene072769:CDS | 40.0% | |
| CACCAAGATTTGATGGAGAA+AGG | + | chr5.3:3780286-3780305 | MS.gene072769:CDS | 40.0% | |
| CTCCTTTCTCCATCAAATCT+TGG | - | chr5.3:3780291-3780310 | None:intergenic | 40.0% | |
| CTTTCTCCATCAAATCTTGG+TGG | - | chr5.3:3780288-3780307 | None:intergenic | 40.0% | |
| GACATTGCTTGGATAGACAA+AGG | + | chr5.3:3781497-3781516 | MS.gene072769:intron | 40.0% | |
| GATGCAGAGCTTCAAATCTA+GGG | + | chr5.3:3779996-3780015 | MS.gene072769:CDS | 40.0% | |
| GGGTAATAGGTGAAACACAA+AGG | - | chr5.3:3781620-3781639 | None:intergenic | 40.0% | |
| GGTATTTGCAGATCTCTCTA+CGG | - | chr5.3:3779797-3779816 | None:intergenic | 40.0% | |
| GTCAAATGCTTCTTCTCTCT+TGG | + | chr5.3:3781387-3781406 | MS.gene072769:intron | 40.0% | |
| GTCAATATGAGGTGATTCGA+GGG | - | chr5.3:3781590-3781609 | None:intergenic | 40.0% | |
| TCAATATGAGGTGATTCGAG+GGG | - | chr5.3:3781589-3781608 | None:intergenic | 40.0% | |
| TGATGCAGAGCTTCAAATCT+AGG | + | chr5.3:3779995-3780014 | MS.gene072769:CDS | 40.0% | |
| ! | CCCACAAAAACATTCGGTTT+TGG | + | chr5.3:3781071-3781090 | MS.gene072769:intron | 40.0% |
| ! | TTGATTTGATCTCCACAGTG+TGG | + | chr5.3:3780585-3780604 | MS.gene072769:intron | 40.0% |
| !! | AGATTTGGCACATCGATTTC+TGG | - | chr5.3:3779961-3779980 | None:intergenic | 40.0% |
| !! | GATTTGGCACATCGATTTCT+GGG | - | chr5.3:3779960-3779979 | None:intergenic | 40.0% |
| !! | TACTGGTTCCTTACCAATGA+TGG | + | chr5.3:3780054-3780073 | MS.gene072769:CDS | 40.0% |
| AATACCCAGATTGAGAGAGG+AGG | + | chr5.3:3781344-3781363 | MS.gene072769:intron | 45.0% | |
| ATGTGAGGGAAACCTTTGCT+TGG | + | chr5.3:3780022-3780041 | MS.gene072769:CDS | 45.0% | |
| CAATATGAGGTGATTCGAGG+GGG | - | chr5.3:3781588-3781607 | None:intergenic | 45.0% | |
| CACAAGACATACCTTGGAAG+AGG | - | chr5.3:3779818-3779837 | None:intergenic | 45.0% | |
| GAATTTGGAGGAGACAAAGG+TGG | + | chr5.3:3780363-3780382 | MS.gene072769:CDS | 45.0% | |
| GATGGAGAAAGGAGATTTGG+TGG | + | chr5.3:3780297-3780316 | MS.gene072769:CDS | 45.0% | |
| GGTGAATTTGGAGGAGACAA+AGG | + | chr5.3:3780360-3780379 | MS.gene072769:CDS | 45.0% | |
| GTAGCAGGAACAATCTCAGA+TGG | - | chr5.3:3780111-3780130 | None:intergenic | 45.0% | |
| TCATCCATCATGGCAAGTTC+AGG | - | chr5.3:3781029-3781048 | None:intergenic | 45.0% | |
| ! | CTGACTACAGGCCTTCTTTT+GGG | + | chr5.3:3780394-3780413 | MS.gene072769:CDS | 45.0% |
| ! | GTGATCGGTTTCATCCATCA+TGG | - | chr5.3:3781039-3781058 | None:intergenic | 45.0% |
| ! | TGACTACAGGCCTTCTTTTG+GGG | + | chr5.3:3780395-3780414 | MS.gene072769:CDS | 45.0% |
| ! | TTTTTGTGGGCAGAATTGGG+CGG | - | chr5.3:3781061-3781080 | None:intergenic | 45.0% |
| !! | AAGTTGATAGGGTTGAGCGT+CGG | + | chr5.3:3780992-3781011 | MS.gene072769:intron | 45.0% |
| !! | GGGAGTTTGCTATGCAAAGA+AGG | + | chr5.3:3779915-3779934 | MS.gene072769:CDS | 45.0% |
| !! | TCCTGCTACTTTGAAGAAGC+AGG | + | chr5.3:3780122-3780141 | MS.gene072769:CDS | 45.0% |
| !! | AAACAAAAAATTAATAAAAT+TGG | - | chr5.3:3779746-3779765 | None:intergenic | 5.0% |
| !! | ATACTTTAATAATATTAAAA+TGG | - | chr5.3:3781435-3781454 | None:intergenic | 5.0% |
| AAAGAAGGCCTGTAGTCAGC+TGG | - | chr5.3:3780393-3780412 | None:intergenic | 50.0% | |
| AATTACCTAGGGCGATCACC+AGG | - | chr5.3:3780180-3780199 | None:intergenic | 50.0% | |
| AATTCACCAGCAGGTCCTCT+TGG | - | chr5.3:3780348-3780367 | None:intergenic | 50.0% | |
| AGAGGACCTGCTGGTGAATT+TGG | + | chr5.3:3780348-3780367 | MS.gene072769:CDS | 50.0% | |
| ATTCACCAGCAGGTCCTCTT+GGG | - | chr5.3:3780347-3780366 | None:intergenic | 50.0% | |
| GACGCTCAACCCTATCAACT+TGG | - | chr5.3:3780993-3781012 | None:intergenic | 50.0% | |
| GCCTGCTTCTTCAAAGTAGC+AGG | - | chr5.3:3780126-3780145 | None:intergenic | 50.0% | |
| GGTCGGATTTCACGGGTAAT+AGG | - | chr5.3:3781633-3781652 | None:intergenic | 50.0% | |
| TCTCCTCCAAATTCACCAGC+AGG | - | chr5.3:3780357-3780376 | None:intergenic | 50.0% | |
| ! | ACAACAACCGGTTGCTGTTC+AGG | - | chr5.3:3781662-3781681 | None:intergenic | 50.0% |
| ! | ACCGGTTGTTGTTCGTGTCA+CGG | + | chr5.3:3781670-3781689 | MS.gene072769:intron | 50.0% |
| ! | AGAGAGGAGGCGCAAAACAT+TGG | + | chr5.3:3781357-3781376 | MS.gene072769:intron | 50.0% |
| ! | GCTGACTACAGGCCTTCTTT+TGG | + | chr5.3:3780393-3780412 | MS.gene072769:CDS | 50.0% |
| !! | AGATTTGGTGGTGACCGTGA+TGG | + | chr5.3:3780309-3780328 | MS.gene072769:CDS | 50.0% |
| !!! | CATTCGGTTTTGGAGGGTCT+CGG | + | chr5.3:3781081-3781100 | MS.gene072769:intron | 50.0% |
| AAGAAGCAGGCTAAGCCAGC+TGG | + | chr5.3:3780135-3780154 | MS.gene072769:CDS | 55.0% | |
| AGGGGCCCACCAAGATTTGA+TGG | + | chr5.3:3780279-3780298 | MS.gene072769:intron | 55.0% | |
| ATCACCAGGAGGACCACCAA+AGG | - | chr5.3:3780166-3780185 | None:intergenic | 55.0% | |
| CCCGTGACACGAACAACAAC+CGG | - | chr5.3:3781674-3781693 | None:intergenic | 55.0% | |
| CCGATCACCTGAACAGCAAC+CGG | + | chr5.3:3781652-3781671 | MS.gene072769:intron | 55.0% | |
| GACACAAGGGAACCACACTG+TGG | - | chr5.3:3780600-3780619 | None:intergenic | 55.0% | |
| GCAGTATGTCACGCCACAAC+TGG | + | chr5.3:3781540-3781559 | MS.gene072769:intron | 55.0% | |
| GGACCTGCTGGTGAATTTGG+AGG | + | chr5.3:3780351-3780370 | MS.gene072769:CDS | 55.0% | |
| GGTGATCGGGTCGGATTTCA+CGG | - | chr5.3:3781641-3781660 | None:intergenic | 55.0% | |
| GTGATCGGGTCGGATTTCAC+GGG | - | chr5.3:3781640-3781659 | None:intergenic | 55.0% | |
| TCACCAGGAGGACCACCAAA+GGG | - | chr5.3:3780165-3780184 | None:intergenic | 55.0% | |
| TGCGCCTCCTCTCTCAATCT+GGG | - | chr5.3:3781351-3781370 | None:intergenic | 55.0% | |
| TGCTGTTCAGGTGATCGGGT+CGG | - | chr5.3:3781650-3781669 | None:intergenic | 55.0% | |
| TGTTGCTCGGCCCTACAAGT+TGG | + | chr5.3:3781695-3781714 | MS.gene072769:intron | 55.0% | |
| TTGCGCCTCCTCTCTCAATC+TGG | - | chr5.3:3781352-3781371 | None:intergenic | 55.0% | |
| ! | CCGGTTGCTGTTCAGGTGAT+CGG | - | chr5.3:3781655-3781674 | None:intergenic | 55.0% |
| ! | CCGGTTGTTGTTCGTGTCAC+GGG | + | chr5.3:3781671-3781690 | MS.gene072769:intron | 55.0% |
| ! | CGGTTGCTGTTCAGGTGATC+GGG | - | chr5.3:3781654-3781673 | None:intergenic | 55.0% |
| ! | TCGTGTCACGGGTTGTTGCT+CGG | + | chr5.3:3781682-3781701 | MS.gene072769:intron | 55.0% |
| !! | GATAGGGTTGAGCGTCGGAT+GGG | + | chr5.3:3780997-3781016 | MS.gene072769:intron | 55.0% |
| !! | TGATAGGGTTGAGCGTCGGA+TGG | + | chr5.3:3780996-3781015 | MS.gene072769:intron | 55.0% |
| !!! | GTTTTGGAGGGTCTCGGCTA+GGG | + | chr5.3:3781087-3781106 | MS.gene072769:intron | 55.0% |
| AAGCCAGCTGGAAGGCCCTT+TGG | + | chr5.3:3780147-3780166 | MS.gene072769:CDS | 60.0% | |
| ACTCTATTGCAGGGCCCTGG+TGG | + | chr5.3:3781889-3781908 | MS.gene072769:intron | 60.0% | |
| AGCAGGCTAAGCCAGCTGGA+AGG | + | chr5.3:3780139-3780158 | MS.gene072769:CDS | 60.0% | |
| CCTGGTGGTAGACCTGGCTT+CGG | + | chr5.3:3781904-3781923 | MS.gene072769:CDS | 60.0% | |
| CGAAGCCAGGTCTACCACCA+GGG | - | chr5.3:3781906-3781925 | None:intergenic | 60.0% | |
| CGGGCCTGAACTTGCCATGA+TGG | + | chr5.3:3781022-3781041 | MS.gene072769:intron | 60.0% | |
| CTGACTCTATTGCAGGGCCC+TGG | + | chr5.3:3781886-3781905 | MS.gene072769:intron | 60.0% | |
| GGCCTCCACGGTATCCATCA+CGG | - | chr5.3:3780326-3780345 | None:intergenic | 60.0% | |
| GGGCAGAATTGGGCGGTGAT+CGG | - | chr5.3:3781054-3781073 | None:intergenic | 60.0% | |
| GTGGAGCTCCAGCTGACTAC+AGG | + | chr5.3:3780382-3780401 | MS.gene072769:CDS | 60.0% | |
| TACCTAGGGCGATCACCAGG+AGG | - | chr5.3:3780177-3780196 | None:intergenic | 60.0% | |
| !! | GACCGTGATGGATACCGTGG+AGG | + | chr5.3:3780321-3780340 | MS.gene072769:CDS | 60.0% |
| !! | GGTCGTGGTTCTGGTGGCTT+TGG | + | chr5.3:3781925-3781944 | MS.gene072769:CDS | 60.0% |
| !! | GGTGACCGTGATGGATACCG+TGG | + | chr5.3:3780318-3780337 | MS.gene072769:CDS | 60.0% |
| !! | GGTTGAGCGTCGGATGGGTT+CGG | + | chr5.3:3781002-3781021 | MS.gene072769:intron | 60.0% |
| !! | GTTGAGCGTCGGATGGGTTC+GGG | + | chr5.3:3781003-3781022 | MS.gene072769:intron | 60.0% |
| !!! | GGTTTTGGAGGGTCTCGGCT+AGG | + | chr5.3:3781086-3781105 | MS.gene072769:intron | 60.0% |
| CAGGTCCTCTTGGGCCTCCA+CGG | - | chr5.3:3780338-3780357 | None:intergenic | 65.0% | |
| CCACCAAAGGGCCTTCCAGC+TGG | - | chr5.3:3780153-3780172 | None:intergenic | 65.0% | |
| CCAGAACCACGACCGAAGCC+AGG | - | chr5.3:3781919-3781938 | None:intergenic | 65.0% | |
| CCAGCTGGAAGGCCCTTTGG+TGG | + | chr5.3:3780150-3780169 | MS.gene072769:CDS | 65.0% | |
| CCGAAGCCAGGTCTACCACC+AGG | - | chr5.3:3781907-3781926 | None:intergenic | 65.0% | |
| CCTGGCTTCGGTCGTGGTTC+TGG | + | chr5.3:3781916-3781935 | MS.gene072769:CDS | 65.0% | |
| GGATACCGTGGAGGCCCAAG+AGG | + | chr5.3:3780330-3780349 | MS.gene072769:CDS | 65.0% | |
| GGTAGACCTGGCTTCGGTCG+TGG | + | chr5.3:3781910-3781929 | MS.gene072769:CDS | 65.0% | |
| GTCCTCCTGGTGATCGCCCT+AGG | + | chr5.3:3780172-3780191 | MS.gene072769:CDS | 65.0% | |
| ! | AGGCCCTTTGGTGGTCCTCC+TGG | + | chr5.3:3780159-3780178 | MS.gene072769:CDS | 65.0% |
| !! | GGCTTCGGTCGTGGTTCTGG+TGG | + | chr5.3:3781919-3781938 | MS.gene072769:CDS | 65.0% |
| CAGGGCCCTGGTGGTAGACC+TGG | + | chr5.3:3781898-3781917 | MS.gene072769:intron | 70.0% | |
| GGAGGCCCAAGAGGACCTGC+TGG | + | chr5.3:3780339-3780358 | MS.gene072769:CDS | 70.0% | |
| GGAGGGTCTCGGCTAGGGCT+GGG | + | chr5.3:3781092-3781111 | MS.gene072769:intron | 70.0% | |
| TGGAGGGTCTCGGCTAGGGC+TGG | + | chr5.3:3781091-3781110 | MS.gene072769:intron | 70.0% | |
| ! | TAGGGCTGGGCGGGTGGGTT+GGG | + | chr5.3:3781105-3781124 | MS.gene072769:intron | 70.0% |
| CTAGGGCTGGGCGGGTGGGT+TGG | + | chr5.3:3781104-3781123 | MS.gene072769:intron | 75.0% | |
| GGGTCTCGGCTAGGGCTGGG+CGG | + | chr5.3:3781095-3781114 | MS.gene072769:intron | 75.0% | |
| GGTCTCGGCTAGGGCTGGGC+GGG | + | chr5.3:3781096-3781115 | MS.gene072769:intron | 75.0% | |
| TCGGCTAGGGCTGGGCGGGT+GGG | + | chr5.3:3781100-3781119 | MS.gene072769:intron | 75.0% | |
| ! | CTCGGCTAGGGCTGGGCGGG+TGG | + | chr5.3:3781099-3781118 | MS.gene072769:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 3779678 | 3781975 | 3779678 | ID=MS.gene072769 |
| chr5.3 | mRNA | 3779678 | 3781975 | 3779678 | ID=MS.gene072769.t1;Parent=MS.gene072769 |
| chr5.3 | exon | 3779678 | 3779680 | 3779678 | ID=MS.gene072769.t1.exon1;Parent=MS.gene072769.t1 |
| chr5.3 | CDS | 3779678 | 3779680 | 3779678 | ID=cds.MS.gene072769.t1;Parent=MS.gene072769.t1 |
| chr5.3 | exon | 3779777 | 3779825 | 3779777 | ID=MS.gene072769.t1.exon2;Parent=MS.gene072769.t1 |
| chr5.3 | CDS | 3779777 | 3779825 | 3779777 | ID=cds.MS.gene072769.t1;Parent=MS.gene072769.t1 |
| chr5.3 | exon | 3779914 | 3780193 | 3779914 | ID=MS.gene072769.t1.exon3;Parent=MS.gene072769.t1 |
| chr5.3 | CDS | 3779914 | 3780193 | 3779914 | ID=cds.MS.gene072769.t1;Parent=MS.gene072769.t1 |
| chr5.3 | exon | 3780281 | 3780416 | 3780281 | ID=MS.gene072769.t1.exon4;Parent=MS.gene072769.t1 |
| chr5.3 | CDS | 3780281 | 3780416 | 3780281 | ID=cds.MS.gene072769.t1;Parent=MS.gene072769.t1 |
| chr5.3 | exon | 3781901 | 3781975 | 3781901 | ID=MS.gene072769.t1.exon5;Parent=MS.gene072769.t1 |
| chr5.3 | CDS | 3781901 | 3781975 | 3781901 | ID=cds.MS.gene072769.t1;Parent=MS.gene072769.t1 |
| Gene Sequence |
| Protein sequence |
