AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene073092

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073092.t1 MTR_2g084815 81.046 306 26 5 1 278 1 302 3.33e-146 412
MS.gene073092.t1 MTR_2g084815 85.017 287 26 5 1 278 1 279 2.51e-145 409
MS.gene073092.t1 MTR_2g084815 79.352 247 19 5 1 219 1 243 3.19e-100 293
MS.gene073092.t1 MTR_2g084815 77.523 218 17 5 1 190 1 214 8.60e-79 239
MS.gene073092.t1 MTR_4g055440 47.773 247 116 5 1 244 5 241 3.18e-55 179
MS.gene073092.t1 MTR_8g069135 80.952 105 13 3 118 220 23 122 3.96e-35 129
MS.gene073092.t1 MTR_4g055450 39.801 201 90 4 2 186 6 191 3.48e-26 105
MS.gene073092.t1 MTR_4g055450 53.125 96 34 4 183 275 270 357 2.63e-14 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073092.t1 AT5G03740 40.850 306 138 10 1 277 1 292 2.68e-45 154
MS.gene073092.t1 AT5G22650 41.096 292 135 9 1 263 1 284 1.55e-36 132
MS.gene073092.t1 AT5G22650 40.956 293 135 10 1 263 1 285 7.23e-35 127
MS.gene073092.t1 AT3G44750 51.087 92 42 2 1 92 1 89 1.06e-23 96.7
MS.gene073092.t1 AT3G44750 51.087 92 42 2 1 92 1 89 1.13e-23 96.7
MS.gene073092.t1 AT2G27840 42.222 90 47 3 1 88 1 87 2.54e-15 72.0
MS.gene073092.t1 AT2G27840 42.222 90 47 3 1 88 1 87 2.98e-15 71.6
MS.gene073092.t1 AT2G27840 41.111 90 48 3 1 88 1 87 3.90e-15 72.8

Find 57 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGTTTCCAATGGAGTTT+TGG 0.108547 2.2:-12787156 None:intergenic
TCCTCCAGACTTGGGAGTTT+TGG 0.188316 2.2:+12784439 None:intergenic
GGAGTCTTTCCACCTTTCTT+AGG 0.193593 2.2:+12784473 None:intergenic
GAAACTTTCTCCTCTGCTTT+TGG 0.244330 2.2:+12785831 None:intergenic
GAAAGTTTCTGAACCTAAAA+AGG 0.272635 2.2:-12785817 MS.gene073092:CDS
TGGGGAACAGAAGCTTGTTT+TGG 0.279640 2.2:-12786641 MS.gene073092:CDS
GATGAATCTGATGATGAAAA+TGG 0.302701 2.2:-12785708 MS.gene073092:CDS
TTTGATTTCTTGGTAGAAAC+TGG 0.315658 2.2:+12785194 None:intergenic
CATTGGGCCTCTTCTTTCCC+TGG 0.324129 2.2:+12785234 None:intergenic
TCTTCATCTTCCTCATCCTT+TGG 0.331069 2.2:+12785747 None:intergenic
TGAATTAGGTGCTGAGGTTA+AGG 0.360277 2.2:-12786878 MS.gene073092:intron
TAAATAACCACAGGCTCATT+TGG 0.360368 2.2:+12786673 None:intergenic
TTTAGCAGGTGCAGCATTCT+TGG 0.365068 2.2:+12785788 None:intergenic
TGTGAATAGCAGCTGCTTCA+TGG 0.368584 2.2:+12786824 None:intergenic
AGGACATTCAACTCTGAAAC+TGG 0.374828 2.2:-12784281 MS.gene073092:CDS
TGGTTATTTACCTCAAAGTT+GGG 0.376973 2.2:-12786660 MS.gene073092:CDS
TTCTGCTCTGTGTTAATCAA+TGG 0.388646 2.2:+12785959 None:intergenic
GCAGCTGCTTCATGGTCATA+TGG 0.391749 2.2:+12786832 None:intergenic
GAGTCTTTCCACCTTTCTTA+GGG 0.394889 2.2:+12784474 None:intergenic
GCTTCTGTTCCCCAACTTTG+AGG 0.408717 2.2:+12786650 None:intergenic
GTGGTTATTTACCTCAAAGT+TGG 0.423882 2.2:-12786661 MS.gene073092:CDS
TCTTGATATTGTCCTTGAAA+AGG 0.424272 2.2:-12786584 MS.gene073092:CDS
GATGCCAAAACTCCCAAGTC+TGG 0.432291 2.2:-12784443 MS.gene073092:CDS
AGCTGCTATTCACATTTCTC+AGG 0.433247 2.2:-12786815 MS.gene073092:intron
TTGGTCTCACCAGTCTTCTC+AGG 0.439494 2.2:+12785161 None:intergenic
TTGTTAGATGGTAAGAAAGC+TGG 0.456417 2.2:-12784515 MS.gene073092:intron
TTAGGTGCTGAGGTTAAGGT+TGG 0.459431 2.2:-12786874 MS.gene073092:intron
AGAGAGTCCTCCTCCAGACT+TGG 0.471298 2.2:+12784430 None:intergenic
TTTCCACCTTTCTTAGGGTG+AGG 0.472414 2.2:+12784479 None:intergenic
ACTTCACTTAGCAGCATGCT+TGG 0.492494 2.2:+12784238 None:intergenic
TCTGCTCTGTGTTAATCAAT+GGG 0.495154 2.2:+12785960 None:intergenic
ACAACCTTCACGTGTTTAGC+AGG 0.509884 2.2:+12785774 None:intergenic
CAGCTGCTTCATGGTCATAT+GGG 0.518931 2.2:+12786833 None:intergenic
GGAAGAGACTCCTGTGAAGA+AGG 0.527324 2.2:-12785351 MS.gene073092:intron
TGTGCCATTACCTTCTTCAC+AGG 0.535491 2.2:+12785341 None:intergenic
GTTATTGTTTAGGTTGCACT+TGG 0.550722 2.2:-12786715 MS.gene073092:intron
TGAGAGTGATGAGGATGATG+AGG 0.559141 2.2:-12785372 MS.gene073092:CDS
GAGAGTCCTCCTCCAGACTT+GGG 0.565423 2.2:+12784431 None:intergenic
AATGCTACTCCTGAGAAGAC+TGG 0.569825 2.2:-12785170 MS.gene073092:intron
AGGTTACCCCAAAACTCCAT+TGG 0.575655 2.2:+12787148 None:intergenic
GCAACTCCTCACCCTAAGAA+AGG 0.575686 2.2:-12784485 MS.gene073092:CDS
GGTTGTTGATCCAAAGGATG+AGG 0.576616 2.2:-12785757 MS.gene073092:CDS
CGTGAAGGTTGTTGATCCAA+AGG 0.578956 2.2:-12785763 MS.gene073092:CDS
AAAACTCCCAAGTCTGGAGG+AGG 0.583660 2.2:-12784437 MS.gene073092:CDS
TTGATTAACACAGAGCAGAA+TGG 0.601793 2.2:-12785956 MS.gene073092:intron
GGTTATTTACCTCAAAGTTG+GGG 0.606552 2.2:-12786659 MS.gene073092:CDS
AAAACCAGAACCAAAAGCAG+AGG 0.625041 2.2:-12785841 MS.gene073092:CDS
TGGACTGCAACAACATAGCA+AGG 0.629185 2.2:-12784261 MS.gene073092:CDS
ACTCCTCACCCTAAGAAAGG+TGG 0.633029 2.2:-12784482 MS.gene073092:CDS
AAATGGAAGCTCTGATGATG+AGG 0.649458 2.2:-12785691 MS.gene073092:intron
TGCACCTGCTAAACACGTGA+AGG 0.650932 2.2:-12785778 MS.gene073092:CDS
GCCAAAACTCCCAAGTCTGG+AGG 0.652249 2.2:-12784440 MS.gene073092:CDS
ACTTTGAGGTAAATAACCAC+AGG 0.655718 2.2:+12786664 None:intergenic
AGACAAACCAAATGAGCCTG+TGG 0.663535 2.2:-12786680 MS.gene073092:CDS
ACAATATCAAGAGAAATCTG+AGG 0.664546 2.2:+12786595 None:intergenic
AGATGATGATGAGAGTGATG+AGG 0.674103 2.2:-12785381 MS.gene073092:CDS
AGGTTGACCAGGGAAAGAAG+AGG 0.740019 2.2:-12785241 MS.gene073092:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGATATATATCTATATA+TGG + chr2.2:12786820-12786839 None:intergenic 10.0%
!!! ATATATTTATTACTTTTAGA+TGG - chr2.2:12787021-12787040 MS.gene073092:intron 10.0%
!!! ATTTTGTGATAAATATATAT+TGG - chr2.2:12786258-12786277 MS.gene073092:intron 10.0%
!!! TAATAGTTTACATTTTATAT+TGG - chr2.2:12785221-12785240 MS.gene073092:CDS 10.0%
!!! TATATTTATTACTTTTAGAT+GGG - chr2.2:12787022-12787041 MS.gene073092:intron 10.0%
!! AAAGTAATAAATATATGCTT+CGG + chr2.2:12787017-12787036 None:intergenic 15.0%
!! AACAAATAAAATAACAATGA+TGG + chr2.2:12786074-12786093 None:intergenic 15.0%
!! TATAATTATTATGGTTACTA+CGG - chr2.2:12786093-12786112 MS.gene073092:intron 15.0%
!! TTAAATTGTGTTAGATATTA+AGG - chr2.2:12786693-12786712 MS.gene073092:CDS 15.0%
!!! TTTTAGATGATATTTTTCTA+AGG - chr2.2:12784937-12784956 MS.gene073092:intron 15.0%
!! AAAAATTTAAACGCGAATTA+AGG + chr2.2:12786853-12786872 None:intergenic 20.0%
!! AACTATAGAATAACAAATCA+AGG + chr2.2:12784908-12784927 None:intergenic 20.0%
!! AAGTAATAAATATATGCTTC+GGG + chr2.2:12787016-12787035 None:intergenic 20.0%
!! ATCAAAAATTAAGAGTAGTT+CGG + chr2.2:12784385-12784404 None:intergenic 20.0%
!! CAAACAATGTTTCAATTTAA+GGG + chr2.2:12786744-12786763 None:intergenic 20.0%
!! TCAAACAATGTTTCAATTTA+AGG + chr2.2:12786745-12786764 None:intergenic 20.0%
!! TCACAAAATATATTACAACT+TGG + chr2.2:12786247-12786266 None:intergenic 20.0%
!!! AAATAACCATTGTTCTTTTT+AGG - chr2.2:12785522-12785541 MS.gene073092:intron 20.0%
!!! TTAATCAATGTTTTGTTTAG+TGG - chr2.2:12785721-12785740 MS.gene073092:CDS 20.0%
!!! TTTATGTTGATAATTGTAGA+TGG - chr2.2:12785966-12785985 MS.gene073092:CDS 20.0%
!!! TTTTTTTTTGCTTGTTGATT+CGG - chr2.2:12786290-12786309 MS.gene073092:intron 20.0%
! ACAATTTAACAACAGTTAAC+TGG + chr2.2:12786425-12786444 None:intergenic 25.0%
! ATTTAGATAACAGATCTGTA+AGG + chr2.2:12785186-12785205 None:intergenic 25.0%
! TATTTCGTGTTCTCAATTTA+GGG - chr2.2:12785871-12785890 MS.gene073092:intron 25.0%
! TTATTTCGTGTTCTCAATTT+AGG - chr2.2:12785870-12785889 MS.gene073092:intron 25.0%
! TTGTAGGTTTACTAAATTTC+TGG - chr2.2:12784645-12784664 MS.gene073092:intron 25.0%
! TTTCAACATTGTGTATGTAT+TGG + chr2.2:12785817-12785836 None:intergenic 25.0%
!! ACATTTGTTAAATGTGCTAT+TGG - chr2.2:12785843-12785862 MS.gene073092:CDS 25.0%
!! CATTTGTTAAATGTGCTATT+GGG - chr2.2:12785844-12785863 MS.gene073092:CDS 25.0%
!! GCGTTTAAATTTTTGTTAGA+TGG - chr2.2:12786859-12786878 MS.gene073092:CDS 25.0%
!!! AGTAGCATTTTTTGATTTCT+TGG + chr2.2:12786205-12786224 None:intergenic 25.0%
!!! ATAATCGTCTTTTTGTTTGA+AGG - chr2.2:12786125-12786144 MS.gene073092:intron 25.0%
!!! CTGATTTTTTTTTGTTGGTT+GGG - chr2.2:12785471-12785490 MS.gene073092:intron 25.0%
!!! TATACGTTGGTTTTTGAATT+AGG - chr2.2:12784494-12784513 MS.gene073092:CDS 25.0%
!!! TCTGATTTTTTTTTGTTGGT+TGG - chr2.2:12785470-12785489 MS.gene073092:intron 25.0%
!!! TTGGTCTGATTTTTTTTTGT+TGG - chr2.2:12785466-12785485 MS.gene073092:intron 25.0%
!!! TTGTCATGCAATTGTTTTTA+AGG - chr2.2:12785326-12785345 MS.gene073092:intron 25.0%
!!! TTTCTGGTTTGTTATTGTTT+AGG - chr2.2:12784661-12784680 MS.gene073092:intron 25.0%
AATGTTTCAATTTAAGGGTG+GGG + chr2.2:12786739-12786758 None:intergenic 30.0%
AATTGCATGACAAATTTCAG+AGG + chr2.2:12785319-12785338 None:intergenic 30.0%
ACAATATCAAGAGAAATCTG+AGG + chr2.2:12784794-12784813 None:intergenic 30.0%
ACAATGTTTCAATTTAAGGG+TGG + chr2.2:12786741-12786760 None:intergenic 30.0%
AGGTTAGATTAAGATTGTGT+TGG - chr2.2:12785346-12785365 MS.gene073092:intron 30.0%
ATGATGTCAATATACACGTT+AGG + chr2.2:12785055-12785074 None:intergenic 30.0%
ATTGCATGACAAATTTCAGA+GGG + chr2.2:12785318-12785337 None:intergenic 30.0%
CAAAAAAAAATCAGACCAAG+AGG + chr2.2:12785465-12785484 None:intergenic 30.0%
CAATGTTTCAATTTAAGGGT+GGG + chr2.2:12786740-12786759 None:intergenic 30.0%
CCAAAACACATCAATAGTTA+AGG + chr2.2:12785263-12785282 None:intergenic 30.0%
GAAAGTTTCTGAACCTAAAA+AGG - chr2.2:12785569-12785588 MS.gene073092:intron 30.0%
GATGACAAATAGACTAATCT+GGG + chr2.2:12785014-12785033 None:intergenic 30.0%
TATTCACATTTCTCAGGTTA+GGG - chr2.2:12784577-12784596 MS.gene073092:intron 30.0%
TCTTGATATTGTCCTTGAAA+AGG - chr2.2:12784802-12784821 MS.gene073092:intron 30.0%
TGGTTATTTACCTCAAAGTT+GGG - chr2.2:12784726-12784745 MS.gene073092:intron 30.0%
! ATAGCTCAAATTCCTTTTCA+AGG + chr2.2:12784817-12784836 None:intergenic 30.0%
! CATTGTTTTCTGATATACGT+TGG - chr2.2:12784481-12784500 MS.gene073092:CDS 30.0%
! CCTTAACTATTGATGTGTTT+TGG - chr2.2:12785260-12785279 MS.gene073092:intron 30.0%
! GATGAATCTGATGATGAAAA+TGG - chr2.2:12785678-12785697 MS.gene073092:intron 30.0%
! GGTTTTCCTAAAAAGAACAA+TGG + chr2.2:12785531-12785550 None:intergenic 30.0%
! TAGTTCTTGCATTTTGTTGA+TGG - chr2.2:12786342-12786361 MS.gene073092:intron 30.0%
! TTTGATTTCTTGGTAGAAAC+TGG + chr2.2:12786195-12786214 None:intergenic 30.0%
!! AACTTGTTTTCACGTGTATT+AGG - chr2.2:12784450-12784469 MS.gene073092:CDS 30.0%
!! ACTTGTTTTCACGTGTATTA+GGG - chr2.2:12784451-12784470 MS.gene073092:CDS 30.0%
!! GTTCTATGTTGTGTTTTTGT+AGG - chr2.2:12784629-12784648 MS.gene073092:intron 30.0%
!! TATAAGTTGTCCATTTTTGC+TGG - chr2.2:12785752-12785771 MS.gene073092:CDS 30.0%
!! TTTTTGTTGTCTTCATTACC+AGG - chr2.2:12787085-12787104 MS.gene073092:intron 30.0%
!!! AGTTTTTGAAGCAGATTCAT+TGG + chr2.2:12786172-12786191 None:intergenic 30.0%
!!! GTTTTTGAAGCAGATTCATT+GGG + chr2.2:12786171-12786190 None:intergenic 30.0%
AATAAATGTTGACCTCAGAC+AGG + chr2.2:12785940-12785959 None:intergenic 35.0%
AATGCAAGAACTAGTGCAAA+TGG + chr2.2:12786335-12786354 None:intergenic 35.0%
ACATGCATAATCAAGACTGA+AGG + chr2.2:12785787-12785806 None:intergenic 35.0%
ATAACGAAAGGAGAAAGATG+AGG + chr2.2:12784261-12784280 None:intergenic 35.0%
CTATTCACATTTCTCAGGTT+AGG - chr2.2:12784576-12784595 MS.gene073092:intron 35.0%
GAAGAAAGGTAGATAACGAA+AGG + chr2.2:12784273-12784292 None:intergenic 35.0%
GACATCATTACCAGCAAAAA+TGG + chr2.2:12785765-12785784 None:intergenic 35.0%
GGATGACAAATAGACTAATC+TGG + chr2.2:12785015-12785034 None:intergenic 35.0%
GGTTATTTACCTCAAAGTTG+GGG - chr2.2:12784727-12784746 MS.gene073092:intron 35.0%
GTCAATGCTGAAATTGTAGT+TGG - chr2.2:12786466-12786485 MS.gene073092:intron 35.0%
GTGGTTATTTACCTCAAAGT+TGG - chr2.2:12784725-12784744 MS.gene073092:intron 35.0%
TAAATAACCACAGGCTCATT+TGG + chr2.2:12784716-12784735 None:intergenic 35.0%
TAGGCTATTATTGCAACACT+AGG + chr2.2:12785036-12785055 None:intergenic 35.0%
TCTGCTCTGTGTTAATCAAT+GGG + chr2.2:12785429-12785448 None:intergenic 35.0%
TTCTGCTCTGTGTTAATCAA+TGG + chr2.2:12785430-12785449 None:intergenic 35.0%
TTGATTAACACAGAGCAGAA+TGG - chr2.2:12785430-12785449 MS.gene073092:intron 35.0%
TTGTTAGATGGTAAGAAAGC+TGG - chr2.2:12786871-12786890 MS.gene073092:CDS 35.0%
! AGGAATTTTGTCCCTGTTTA+GGG + chr2.2:12784774-12784793 None:intergenic 35.0%
! TTTTCACGTGTATTAGGGTT+TGG - chr2.2:12784456-12784475 MS.gene073092:CDS 35.0%
!! AATGTAGCTTGTTTGCATCA+AGG - chr2.2:12786602-12786621 MS.gene073092:CDS 35.0%
!! ACTTTGAGGTAAATAACCAC+AGG + chr2.2:12784725-12784744 None:intergenic 35.0%
!! ATTGTAGTTGGTTTGCATCA+TGG - chr2.2:12786478-12786497 MS.gene073092:intron 35.0%
!! GTTATTGTTTAGGTTGCACT+TGG - chr2.2:12784671-12784690 MS.gene073092:intron 35.0%
!! GTTTAGTTTGTTGCTATCCT+AGG - chr2.2:12785158-12785177 MS.gene073092:intron 35.0%
!! TGCATTTTGTTGATGGATCA+TGG - chr2.2:12786349-12786368 MS.gene073092:intron 35.0%
!! TTGTTGATTCGGTGTTAGAT+CGG - chr2.2:12786301-12786320 MS.gene073092:intron 35.0%
!! TTTTGTTTGAAGGTTGACCA+GGG - chr2.2:12786135-12786154 MS.gene073092:intron 35.0%
!! TTTTTGTTTGAAGGTTGACC+AGG - chr2.2:12786134-12786153 MS.gene073092:intron 35.0%
AAAACCAGAACCAAAAGCAG+AGG - chr2.2:12785545-12785564 MS.gene073092:intron 40.0%
AACACAGAGCAGAATGGTAT+GGG - chr2.2:12785436-12785455 MS.gene073092:intron 40.0%
AGCTGCTATTCACATTTCTC+AGG - chr2.2:12784571-12784590 MS.gene073092:intron 40.0%
AGTTTCAGAGTTGAATGTCC+TGG + chr2.2:12787106-12787125 None:intergenic 40.0%
CATCGTTATTCAGCGAAGAA+AGG + chr2.2:12784287-12784306 None:intergenic 40.0%
GAGTCTTTCCACCTTTCTTA+GGG + chr2.2:12786915-12786934 None:intergenic 40.0%
GTCAGACATGCTGAAATTTG+AGG - chr2.2:12786774-12786793 MS.gene073092:intron 40.0%
GTCTTGATTATGCATGTCTG+AGG - chr2.2:12785790-12785809 MS.gene073092:CDS 40.0%
TAACACAGAGCAGAATGGTA+TGG - chr2.2:12785435-12785454 MS.gene073092:intron 40.0%
TCTTCATCTTCCTCATCCTT+TGG + chr2.2:12785642-12785661 None:intergenic 40.0%
! AAATGGAAGCTCTGATGATG+AGG - chr2.2:12785695-12785714 MS.gene073092:CDS 40.0%
! AGATGATGATGAGAGTGATG+AGG - chr2.2:12786005-12786024 MS.gene073092:intron 40.0%
! GAAACTTTCTCCTCTGCTTT+TGG + chr2.2:12785558-12785577 None:intergenic 40.0%
! GAGGAATTTTGTCCCTGTTT+AGG + chr2.2:12784775-12784794 None:intergenic 40.0%
! TTCTTGGCATCAGCCTTTTT+AGG + chr2.2:12785585-12785604 None:intergenic 40.0%
!! AGGACATTCAACTCTGAAAC+TGG - chr2.2:12787105-12787124 MS.gene073092:intron 40.0%
!! GGTTTTTGAATTAGGTGCTG+AGG - chr2.2:12784502-12784521 MS.gene073092:CDS 40.0%
!! TGAATTAGGTGCTGAGGTTA+AGG - chr2.2:12784508-12784527 MS.gene073092:CDS 40.0%
!!! TGTTTTGGGAACCCTAAACA+GGG - chr2.2:12784760-12784779 MS.gene073092:intron 40.0%
!!! TTGTTTTGGGAACCCTAAAC+AGG - chr2.2:12784759-12784778 MS.gene073092:intron 40.0%
AATGCTACTCCTGAGAAGAC+TGG - chr2.2:12786216-12786235 MS.gene073092:intron 45.0%
ACAACCTTCACGTGTTTAGC+AGG + chr2.2:12785615-12785634 None:intergenic 45.0%
AGACAAACCAAATGAGCCTG+TGG - chr2.2:12784706-12784725 MS.gene073092:intron 45.0%
CAGCTGCTTCATGGTCATAT+GGG + chr2.2:12784556-12784575 None:intergenic 45.0%
CGTGAAGGTTGTTGATCCAA+AGG - chr2.2:12785623-12785642 MS.gene073092:intron 45.0%
GAATGGTATGGGTTTCCTCT+TGG - chr2.2:12785447-12785466 MS.gene073092:intron 45.0%
GACCTCAGACAGGCATAAAA+AGG + chr2.2:12785930-12785949 None:intergenic 45.0%
GACTCCTGTGAAGAAGGTAA+TGG - chr2.2:12786041-12786060 MS.gene073092:intron 45.0%
GCTGCTAGTGTTCATTTCTG+TGG - chr2.2:12784851-12784870 MS.gene073092:intron 45.0%
GGAGTCTTTCCACCTTTCTT+AGG + chr2.2:12786916-12786935 None:intergenic 45.0%
GGTTGTTGATCCAAAGGATG+AGG - chr2.2:12785629-12785648 MS.gene073092:intron 45.0%
TGAGAGTGATGAGGATGATG+AGG - chr2.2:12786014-12786033 MS.gene073092:intron 45.0%
TGGACTGCAACAACATAGCA+AGG - chr2.2:12787125-12787144 MS.gene073092:intron 45.0%
TGTGAATAGCAGCTGCTTCA+TGG + chr2.2:12784565-12784584 None:intergenic 45.0%
TTTAGCAGGTGCAGCATTCT+TGG + chr2.2:12785601-12785620 None:intergenic 45.0%
TTTCCACCTTTCTTAGGGTG+AGG + chr2.2:12786910-12786929 None:intergenic 45.0%
! AACAGATCTGTAAGGCACCT+AGG + chr2.2:12785178-12785197 None:intergenic 45.0%
! GTCCTTTTTATGCCTGTCTG+AGG - chr2.2:12785925-12785944 MS.gene073092:intron 45.0%
! TGTGCCATTACCTTCTTCAC+AGG + chr2.2:12786048-12786067 None:intergenic 45.0%
!! GGAGTTTTGGCATCACTGTT+AGG + chr2.2:12786937-12786956 None:intergenic 45.0%
!! GGGGAACAGAAGCTTGTTTT+GGG - chr2.2:12784746-12784765 MS.gene073092:intron 45.0%
!! TGGGGAACAGAAGCTTGTTT+TGG - chr2.2:12784745-12784764 MS.gene073092:intron 45.0%
!! TTAGGTGCTGAGGTTAAGGT+TGG - chr2.2:12784512-12784531 MS.gene073092:intron 45.0%
!!! TTCTCCTCTGCTTTTGGTTC+TGG + chr2.2:12785552-12785571 None:intergenic 45.0%
!!! TTTATTTGTTATAATTATTA+TGG - chr2.2:12786084-12786103 MS.gene073092:intron 5.0%
AAAACTCCCAAGTCTGGAGG+AGG - chr2.2:12786949-12786968 MS.gene073092:intron 50.0%
ACGAGTGAGGAAGGTGAAAC+TGG - chr2.2:12785288-12785307 MS.gene073092:intron 50.0%
ACTCCTCACCCTAAGAAAGG+TGG - chr2.2:12786904-12786923 MS.gene073092:intron 50.0%
AGGTTGACCAGGGAAAGAAG+AGG - chr2.2:12786145-12786164 MS.gene073092:intron 50.0%
GATGCCAAAACTCCCAAGTC+TGG - chr2.2:12786943-12786962 MS.gene073092:intron 50.0%
GCAACTCCTCACCCTAAGAA+AGG - chr2.2:12786901-12786920 MS.gene073092:intron 50.0%
GCAGCTGCTTCATGGTCATA+TGG + chr2.2:12784557-12784576 None:intergenic 50.0%
GCTTCTGTTCCCCAACTTTG+AGG + chr2.2:12784739-12784758 None:intergenic 50.0%
GGAAGAGACTCCTGTGAAGA+AGG - chr2.2:12786035-12786054 MS.gene073092:intron 50.0%
TGCACCTGCTAAACACGTGA+AGG - chr2.2:12785608-12785627 MS.gene073092:intron 50.0%
TTGGTCTCACCAGTCTTCTC+AGG + chr2.2:12786228-12786247 None:intergenic 50.0%
! TCCTCCAGACTTGGGAGTTT+TGG + chr2.2:12786950-12786969 None:intergenic 50.0%
!!! TGTTTTGGCTTGCACGAGTG+AGG - chr2.2:12785275-12785294 MS.gene073092:intron 50.0%
AGAGAGTCCTCCTCCAGACT+TGG + chr2.2:12786959-12786978 None:intergenic 55.0%
CATTGGGCCTCTTCTTTCCC+TGG + chr2.2:12786155-12786174 None:intergenic 55.0%
GAGAGTCCTCCTCCAGACTT+GGG + chr2.2:12786958-12786977 None:intergenic 55.0%
GCCAAAACTCCCAAGTCTGG+AGG - chr2.2:12786946-12786965 MS.gene073092:intron 55.0%
!! TTGGCTTGCACGAGTGAGGA+AGG - chr2.2:12785279-12785298 MS.gene073092:intron 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 12784241 12787167 12784241 ID=MS.gene073092
chr2.2 mRNA 12784241 12787167 12784241 ID=MS.gene073092.t1;Parent=MS.gene073092
chr2.2 exon 12787155 12787167 12787155 ID=MS.gene073092.t1.exon1;Parent=MS.gene073092.t1
chr2.2 CDS 12787155 12787167 12787155 ID=cds.MS.gene073092.t1;Parent=MS.gene073092.t1
chr2.2 exon 12786816 12786892 12786816 ID=MS.gene073092.t1.exon2;Parent=MS.gene073092.t1
chr2.2 CDS 12786816 12786892 12786816 ID=cds.MS.gene073092.t1;Parent=MS.gene073092.t1
chr2.2 exon 12786539 12786725 12786539 ID=MS.gene073092.t1.exon3;Parent=MS.gene073092.t1
chr2.2 CDS 12786539 12786725 12786539 ID=cds.MS.gene073092.t1;Parent=MS.gene073092.t1
chr2.2 exon 12785957 12786001 12785957 ID=MS.gene073092.t1.exon4;Parent=MS.gene073092.t1
chr2.2 CDS 12785957 12786001 12785957 ID=cds.MS.gene073092.t1;Parent=MS.gene073092.t1
chr2.2 exon 12785692 12785864 12785692 ID=MS.gene073092.t1.exon5;Parent=MS.gene073092.t1
chr2.2 CDS 12785692 12785864 12785692 ID=cds.MS.gene073092.t1;Parent=MS.gene073092.t1
chr2.2 exon 12785352 12785423 12785352 ID=MS.gene073092.t1.exon6;Parent=MS.gene073092.t1
chr2.2 CDS 12785352 12785423 12785352 ID=cds.MS.gene073092.t1;Parent=MS.gene073092.t1
chr2.2 exon 12785171 12785261 12785171 ID=MS.gene073092.t1.exon7;Parent=MS.gene073092.t1
chr2.2 CDS 12785171 12785261 12785171 ID=cds.MS.gene073092.t1;Parent=MS.gene073092.t1
chr2.2 exon 12784413 12784530 12784413 ID=MS.gene073092.t1.exon8;Parent=MS.gene073092.t1
chr2.2 CDS 12784413 12784530 12784413 ID=cds.MS.gene073092.t1;Parent=MS.gene073092.t1
chr2.2 exon 12784241 12784301 12784241 ID=MS.gene073092.t1.exon9;Parent=MS.gene073092.t1
chr2.2 CDS 12784241 12784301 12784241 ID=cds.MS.gene073092.t1;Parent=MS.gene073092.t1
Gene Sequence

>MS.gene073092

ATGGAGTTTTGGGGTAACCTCATCTTTCTCCTTTCGTTATCTACCTTTCTTCGCTGAATAACGATGACTTGTTTTTATTGATTTTGTTTTCGTTGATTGTTTCATTTTGAATTTTTTTGTTATAATTAGTCGTTTAATTAACCGAACTACTCTTAATTTTTGATCAATTTATCGTTAATTTGAATGTGTTATTGTTAATTTGAACGCAGAACTTGTTTTCACGTGTATTAGGGTTTGGTTCATTGTTTTCTGATATACGTTGGTTTTTGAATTAGGTGCTGAGGTTAAGGTTGGAGAAACTATCAAGATTGACCCATATGACCATGAAGCAGCTGCTATTCACATTTCTCAGGTTAGGGTTTTGTTGTTGATGATGTTGTGTTGTTATGTTCTATGTTGTGTTTTTGTAGGTTTACTAAATTTCTGGTTTGTTATTGTTTAGGTTGCACTTGGTGAAGCAAAGAAAGACAAACCAAATGAGCCTGTGGTTATTTACCTCAAAGTTGGGGAACAGAAGCTTGTTTTGGGAACCCTAAACAGGGACAAAATTCCTCAGATTTCTCTTGATATTGTCCTTGAAAAGGAATTTGAGCTATCTCACAATTCTAAAGCTGCTAGTGTTCATTTCTGTGGATACAAAGCTTTCTATGAAGATGATGAATATCCTTGATTTGTTATTCTATAGTTTATTCATATTTTTAGATGATATTTTTCTAAGGTAGTAATAGTATGTTAGTGTATTTGCTGATCTGTTATTAAATTCATGTTAACCCAGATTAGTCTATTTGTCATCCTAGTGTTGCAATAATAGCCTAACGTGTATATTGACATCATTTTAATTTTTGTTTATATTTTTACTTGAAATTTAAATGTTTATATTTTTACTTGAAATTTAAAGTATATTTATTTAGAGTATAGTTTAGTTTGTTGCTATCCTAGGTGCCTTACAGATCTGTTATCTAAATGTGTAGTTAATGTTGTAATAGTTTACATTTTATATTGGCATCATCTTAATTTTTCCTTAACTATTGATGTGTTTTGGCTTGCACGAGTGAGGAAGGTGAAACTGGTGAGCCCTCTGAAATTTGTCATGCAATTGTTTTTAAGGTTAGATTAAGATTGTGTTGGTTGCTTAAACATAGTTGTATTGTCTTTGTTTTGAACAGATAGTGAAGATGAAGACATCCCATTGATTAACACAGAGCAGAATGGTATGGGTTTCCTCTTGGTCTGATTTTTTTTTGTTGGTTGGGCTTGTTATTACTTTAGAATCTGTCAACTAAATAACCATTGTTCTTTTTAGGAAAACCAGAACCAAAAGCAGAGGAGAAAGTTTCTGAACCTAAAAAGGCTGATGCCAAGAATGCTGCACCTGCTAAACACGTGAAGGTTGTTGATCCAAAGGATGAGGAAGATGAAGATTCTGATGATGATTCTGATGAATCTGATGATGAAAATGGAAGCTCTGATGATGAGGTATTTAATCAATGTTTTGTTTAGTGGCATGTTGCTATAAGTTGTCCATTTTTGCTGGTAATGATGTCCTTCAGTCTTGATTATGCATGTCTGAGGTCCAATACATACACAATGTTGAAATGAGATACATTTGTTAAATGTGCTATTGGGTTATTATTTCGTGTTCTCAATTTAGGGAATTTTTTTTTATCATCTTCAGTAAATATATGTCCTTTTTATGCCTGTCTGAGGTCAACATTTATTAATTTTTTTATGTTGATAATTGTAGATGGAGAATGCTGATAGTGAAGATGATGATGAGAGTGATGAGGATGATGAGGAAGAGACTCCTGTGAAGAAGGTAATGGCACATTGCCATCATTGTTATTTTATTTGTTATAATTATTATGGTTACTACGGTGATTTGTGATAATCGTCTTTTTGTTTGAAGGTTGACCAGGGAAAGAAGAGGCCCAATGAATCTGCTTCAAAAACTCCAGTTTCTACCAAGAAATCAAAAAATGCTACTCCTGAGAAGACTGGTGAGACCAAGTTGTAATATATTTTGTGATAAATATATATTGGACAAGTGTTTTTTTTTTTGCTTGTTGATTCGGTGTTAGATCGGTGTTAAATCCATTTGCACTAGTTCTTGCATTTTGTTGATGGATCATGGATTGATACTTGCGTTTGTATGCTGTATTGTTTATATCTCTCTACTATACACCAGTTAACTGTTGTTAAATTGTAGTATTGATTGAATGATGCATGTCAATGCTGAAATTGTAGTTGGTTTGCATCATGGATTCATGCTTGCATTTGCATGCTGTGTTGTTTATATCTTTATTTGTAAATTGTTACATTGTGTTAGATTTAAAGAAATGAATGTTTTATGTCAATGCTGAAAATGTAGCTTGTTTGCATCAAGGATTCATTCTAGCATTTGCATGCTGTATTGTTTATATCTTTAGTCTTTCTACTATACATCTGTAAACTGTTAAATTGTGTTAGATATTAAGGAAGCTAGACATATAGCTACTCCCCACCCTTAAATTGAAACATTGTTTGAATGTTGCATGTCAGACATGCTGAAATTTGAGGTCGTTTGCATAATTTATTCTCCATATATAGATATATATCTTTTTGTTGCACATCCTTAATTCGCGTTTAAATTTTTGTTAGATGGTAAGAAAGCTGGACATACAGCAACTCCTCACCCTAAGAAAGGTGGAAAGACTCCTAACAGTGATGCCAAAACTCCCAAGTCTGGAGGAGGACTCTCTTGCAGTAGTTGCAGCAAGTATGCTTTTAACAAAACCCGAAGCATATATTTATTACTTTTAGATGGGTTGTGATTGATTTTTAGATCGATTGTGATTGATGTTTCTTTTTTTGTTGTCTTCATTACCAGGACATTCAACTCTGAAACTGGACTGCAACAACATAGCAAGGCCAAGCATGCTGCTAAGTGA
Protein sequence

>MS.gene073092.t1

MEFWGAEVKVGETIKIDPYDHEAAAIHISQVALGEAKKDKPNEPVVIYLKVGEQKLVLGTLNRDKIPQISLDIVLEKEFELSHNSKAASVHFYSEDEDIPLINTEQNGKPEPKAEEKVSEPKKADAKNAAPAKHVKVVDPKDEEDEDSDDDSDESDDENGSSDDEMENADSEDDDESDEDDEEETPVKKVDQGKKRPNESASKTPVSTKKSKNATPEKTDGKKAGHTATPHPKKGGKTPNSDAKTPKSGGGLSCSSCSKTFNSETGLQQHSKAKHAAK