AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07434

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07434.t1 MTR_1g076850 98.160 326 6 0 1 326 1 326 0.0 656
MS.gene07434.t1 MTR_2g098950 66.772 316 105 0 8 323 14 329 4.84e-159 447
MS.gene07434.t1 MTR_4g067310 66.246 317 107 0 8 324 15 331 6.38e-156 440
MS.gene07434.t1 MTR_6g089480 64.401 309 108 2 15 321 1 309 3.03e-149 422
MS.gene07434.t1 MTR_1g101950 63.175 315 114 2 8 320 23 337 5.18e-148 420
MS.gene07434.t1 MTR_5g079460 66.026 312 105 1 5 315 64 375 3.45e-145 415
MS.gene07434.t1 MTR_6g089480 66.543 269 88 2 15 281 1 269 6.46e-132 377
MS.gene07434.t1 MTR_6g089480 66.543 269 88 2 15 281 1 269 8.76e-132 376
MS.gene07434.t1 MTR_7g075860 58.466 313 126 3 5 313 38 350 6.36e-130 375
MS.gene07434.t1 MTR_1g057810 50.637 314 143 4 8 317 253 558 2.04e-102 311
MS.gene07434.t1 MTR_1g069490 48.750 320 136 3 8 325 110 403 6.77e-102 305
MS.gene07434.t1 MTR_1g069745 50.865 289 128 4 34 320 9 285 1.24e-98 293
MS.gene07434.t1 MTR_1g105150 47.452 314 139 5 8 317 253 544 5.40e-90 279
MS.gene07434.t1 MTR_1g054730 45.055 273 121 2 48 320 144 387 6.02e-74 233
MS.gene07434.t1 MTR_5g044990 31.897 348 198 5 7 318 209 553 6.20e-53 183
MS.gene07434.t1 MTR_4g019165 34.906 318 174 4 34 318 133 450 1.42e-51 177
MS.gene07434.t1 MTR_0046s0180 52.427 103 49 0 218 320 7 109 2.27e-34 122
MS.gene07434.t1 MTR_1g070375 24.646 353 224 9 3 324 70 411 2.72e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07434.t1 AT4G10260 78.233 317 69 0 7 323 5 321 0.0 523
MS.gene07434.t1 AT3G59480 66.875 320 106 0 2 321 4 323 1.50e-161 454
MS.gene07434.t1 AT1G06020 67.296 318 104 0 8 325 10 327 1.07e-159 450
MS.gene07434.t1 AT1G06030 67.188 320 105 0 2 321 5 324 6.38e-159 447
MS.gene07434.t1 AT2G31390 66.879 314 104 0 8 321 9 322 1.84e-158 446
MS.gene07434.t1 AT1G66430 63.950 319 114 1 2 319 59 377 1.90e-151 431
MS.gene07434.t1 AT5G51830 63.863 321 114 2 8 326 23 343 1.64e-150 426
MS.gene07434.t1 AT5G51830 63.863 321 114 2 8 326 23 343 1.64e-150 426
MS.gene07434.t1 AT3G54090 34.072 361 190 6 7 320 102 461 7.21e-56 188
MS.gene07434.t1 AT1G50390 52.071 169 52 1 153 321 1 140 1.89e-52 170
MS.gene07434.t1 AT1G69200 31.307 329 190 4 7 300 205 532 5.37e-47 167
MS.gene07434.t1 AT1G06730 24.917 301 205 6 40 327 132 424 3.38e-12 67.4
MS.gene07434.t1 AT1G17160 23.973 292 192 7 39 321 105 375 6.26e-11 63.2

Find 75 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAAAGTCTCTCTCAATTT+TGG 0.146753 1.2:-63464938 None:intergenic
GCAAGAGACCCTTCTATATT+TGG 0.155547 1.2:+63464775 MS.gene07434:CDS
ACCTTCTCTAGCAGCTTTCA+TGG 0.275867 1.2:-63463825 None:intergenic
CAAGAGACCCTTCTATATTT+GGG 0.290405 1.2:+63464776 MS.gene07434:CDS
GGCAGCATTGCCACCAAGTT+TGG 0.291331 1.2:-63462889 None:intergenic
AAGCATACCCCAAATATAGA+AGG 0.366100 1.2:-63464784 None:intergenic
AATACAAAGATATTCCATTA+TGG 0.367235 1.2:+63463755 MS.gene07434:CDS
ACAGCACAAGCCACATTGGC+AGG 0.372362 1.2:-63462864 None:intergenic
TCTGCTGAGGCTGCTAGGTC+TGG 0.380493 1.2:+63463896 MS.gene07434:CDS
AAGAAGCTGTTATGTCTCTA+TGG 0.387207 1.2:+63464146 MS.gene07434:CDS
ACATTGGCAGGGGCACCGCC+AGG 0.390542 1.2:-63462852 None:intergenic
CAAATGTCAGGCTTCCTTTG+TGG 0.390789 1.2:+63463870 MS.gene07434:CDS
TAAGACTAATGGATCCATAA+TGG 0.395043 1.2:-63463769 None:intergenic
CAGGTAGGGGATGATGAGTT+TGG 0.399164 1.2:+63463542 MS.gene07434:intron
TGGTTCTGAAATAAGACTAA+TGG 0.406052 1.2:-63463780 None:intergenic
TCGCCGAATGATATCACTAA+TGG 0.409144 1.2:-63462759 None:intergenic
GGTCTGGAATCAAAAGCATT+TGG 0.412730 1.2:+63463912 MS.gene07434:CDS
ACCATGTAGATCTGCTCATA+TGG 0.422423 1.2:+63463799 MS.gene07434:CDS
AAGCCTGACATTTGGATCAT+AGG 0.423973 1.2:-63463861 None:intergenic
TTTGTGACATTGAGGAAAGA+TGG 0.427613 1.2:+63463650 MS.gene07434:CDS
GCTTGTGCTGTGTCCAAACT+TGG 0.436119 1.2:+63462876 MS.gene07434:CDS
ATAACAGCTTCTTCATTCTC+AGG 0.444898 1.2:-63464136 None:intergenic
CACAAAGGAAGCCTGACATT+TGG 0.445582 1.2:-63463869 None:intergenic
AGTTTAGTTGGCTTTAGAGC+TGG 0.453062 1.2:-63465050 None:intergenic
GTGAAGGCAATTGACACAAC+TGG 0.456721 1.2:+63464712 MS.gene07434:CDS
AGACACATCTGGTGTATCCT+TGG 0.457720 1.2:+63462803 MS.gene07434:CDS
TTCTGAGCCTCTTCAGCAGT+TGG 0.458744 1.2:-63465019 None:intergenic
TCCTTTGTGGCCTTCTGCTG+AGG 0.474259 1.2:+63463883 MS.gene07434:CDS
AAGAAGAAGAACAAGATGTC+AGG 0.478396 1.2:+63462726 None:intergenic
TTAACATTTGCAAATGCTTG+TGG 0.485254 1.2:+63464956 MS.gene07434:CDS
ATTGAGGAAAGATGGAGAGA+GGG 0.488808 1.2:+63463658 MS.gene07434:CDS
ATTGGCAGGGGCACCGCCAG+GGG 0.492610 1.2:-63462850 None:intergenic
GGCCTTCTGCTGAGGCTGCT+AGG 0.493211 1.2:+63463891 MS.gene07434:CDS
TGCACTTCCAACTGCTGAAG+AGG 0.495831 1.2:+63465012 MS.gene07434:CDS
CATTGGCAGGGGCACCGCCA+GGG 0.499364 1.2:-63462851 None:intergenic
GATCCATTAGTGATATCATT+CGG 0.499392 1.2:+63462756 MS.gene07434:CDS
TCTTCAGCAGTTGGAAGTGC+AGG 0.503583 1.2:-63465010 None:intergenic
ATTAAGAACCTTGCCGATGA+AGG 0.504091 1.2:-63462910 None:intergenic
GACCTAGCAGCCTCAGCAGA+AGG 0.506010 1.2:-63463893 None:intergenic
AAGGATACACCAGATGTGTC+TGG 0.508328 1.2:-63462801 None:intergenic
AAGCTGCTTATTATCACTGA+TGG 0.515902 1.2:+63464181 MS.gene07434:CDS
TGTGCTGTGTCCAAACTTGG+TGG 0.518945 1.2:+63462879 MS.gene07434:CDS
CACAGAGGCAAGAACTGCAT+TGG 0.524471 1.2:+63463625 MS.gene07434:CDS
AGCAGTTGGAAGTGCAGGAA+TGG 0.528605 1.2:-63465005 None:intergenic
TGTCCTATGATCCAAATGTC+AGG 0.532074 1.2:+63463858 MS.gene07434:CDS
AATCAAAAGCATTTGGAATG+AGG 0.534914 1.2:+63463919 MS.gene07434:CDS
CATTGAGGAAAGATGGAGAG+AGG 0.536347 1.2:+63463657 MS.gene07434:CDS
TATTATCACTGATGGAGAGA+AGG 0.541140 1.2:+63464189 MS.gene07434:CDS
GGTGGCAATGCTGCCTTCAT+CGG 0.543040 1.2:+63462897 MS.gene07434:CDS
TTCAGTAACATATCAGCACT+AGG 0.548072 1.2:-63463701 None:intergenic
GCAATTGACACAACTGGTGC+TGG 0.548770 1.2:+63464718 MS.gene07434:CDS
TATGCTTTCATCAAAGCCCC+TGG 0.549304 1.2:+63462834 MS.gene07434:CDS
ATTATCACTGATGGAGAGAA+GGG 0.554637 1.2:+63464190 MS.gene07434:CDS
GAATGAGGCTGATTTCATCA+AGG 0.558047 1.2:+63463934 MS.gene07434:CDS
TAGGGGATGATGAGTTTGGA+AGG 0.562525 1.2:+63463546 MS.gene07434:CDS
CAGCACAAGCCACATTGGCA+GGG 0.565146 1.2:-63462863 None:intergenic
AGCACAAGCCACATTGGCAG+GGG 0.566309 1.2:-63462862 None:intergenic
GCCTCAGCAGAAGGCCACAA+AGG 0.575264 1.2:-63463884 None:intergenic
GCCATATGAGCAGATCTACA+TGG 0.575838 1.2:-63463800 None:intergenic
TCAGTAACATATCAGCACTA+GGG 0.589086 1.2:-63463700 None:intergenic
AGCATACCCCAAATATAGAA+GGG 0.593760 1.2:-63464783 None:intergenic
GGACACAGCACAAGCCACAT+TGG 0.596726 1.2:-63462868 None:intergenic
GCCATGAAAGCTGCTAGAGA+AGG 0.601701 1.2:+63463824 MS.gene07434:CDS
CAATGCTGCCTTCATCGGCA+AGG 0.604108 1.2:+63462902 MS.gene07434:CDS
TGGCGGTGCCCCTGCCAATG+TGG 0.604697 1.2:+63462854 MS.gene07434:CDS
AGCAATGTGTACAACACAGA+AGG 0.614417 1.2:+63464979 MS.gene07434:CDS
GGGTTGTAGATATGTCACTA+AGG 0.615724 1.2:+63464210 MS.gene07434:CDS
AAGAGACCCTTCTATATTTG+GGG 0.620591 1.2:+63464777 MS.gene07434:CDS
GGTAAGTGGGTTCTCAGTGA+AGG 0.620599 1.2:+63464696 MS.gene07434:CDS
GAAAGAATCTGAATTGAACA+TGG 0.634038 1.2:+63463721 MS.gene07434:CDS
GCAATGTGTACAACACAGAA+GGG 0.647308 1.2:+63464980 MS.gene07434:CDS
TGGTGCACTTCTCAGAGATG+TGG 0.663280 1.2:+63464753 MS.gene07434:CDS
ATGAAAGCTGCTAGAGAAGG+TGG 0.665141 1.2:+63463827 MS.gene07434:CDS
GAAAGCATAAGATTCAGCCA+AGG 0.678603 1.2:-63462820 None:intergenic
GCTTTCATCAAAGCCCCTGG+CGG 0.681461 1.2:+63462837 MS.gene07434:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATAATCTTCTTGAA+TGG - chr1.2:63464369-63464388 None:intergenic 15.0%
!! ATATATACTTAAAATGAATG+CGG + chr1.2:63462983-63463002 MS.gene07434:intron 15.0%
!! TAAAAATAATCTTCTTGAAT+GGG - chr1.2:63464368-63464387 None:intergenic 15.0%
!! TTTGTAAAAATAATTCTCAT+TGG + chr1.2:63464871-63464890 MS.gene07434:intron 15.0%
!!! AATGAGAATTATTTTTACAA+AGG - chr1.2:63464872-63464891 None:intergenic 15.0%
!!! ATAGAATATTGATAATATGA+GGG + chr1.2:63463441-63463460 MS.gene07434:intron 15.0%
!!! ATTTTTATCTATTCACAAAT+AGG + chr1.2:63464381-63464400 MS.gene07434:intron 15.0%
!!! TATAGAATATTGATAATATG+AGG + chr1.2:63463440-63463459 MS.gene07434:intron 15.0%
!!! TTGAATTTGAAATTTCTTTA+TGG + chr1.2:63463969-63463988 MS.gene07434:intron 15.0%
!!! TTTTTATCTATTCACAAATA+GGG + chr1.2:63464382-63464401 MS.gene07434:intron 15.0%
!! AATACAAAGATATTCCATTA+TGG + chr1.2:63463755-63463774 MS.gene07434:CDS 20.0%
!! ATAAATTTCAATGACCATAT+TGG - chr1.2:63463181-63463200 None:intergenic 20.0%
!! ATATGGTCATTGAAATTTAT+AGG + chr1.2:63463181-63463200 MS.gene07434:intron 20.0%
!! GATAAACATGATAGTAAAAT+GGG - chr1.2:63462947-63462966 None:intergenic 20.0%
!! TTTAAAAGAATCTGTAAAAG+TGG + chr1.2:63464042-63464061 MS.gene07434:intron 20.0%
!!! GCATTCATTTTAAGTATATA+TGG - chr1.2:63462984-63463003 None:intergenic 20.0%
!!! TGAAATTTTTGTTTGCTTTA+TGG + chr1.2:63464895-63464914 MS.gene07434:intron 20.0%
! AAACTTACCATTCTCTATAT+AGG + chr1.2:63464075-63464094 MS.gene07434:intron 25.0%
! AAGATAAAATTAAGTCAAGC+TGG - chr1.2:63464560-63464579 None:intergenic 25.0%
! AGATAAAATTAAGTCAAGCT+GGG - chr1.2:63464559-63464578 None:intergenic 25.0%
! CGATAAACATGATAGTAAAA+TGG - chr1.2:63462948-63462967 None:intergenic 25.0%
! TATGGAAGTCTATTAAATGA+TGG + chr1.2:63463987-63464006 MS.gene07434:intron 25.0%
! TCAAACAATATTTCCAAAGA+TGG - chr1.2:63464656-63464675 None:intergenic 25.0%
! TTCTGAGTAAATATCCAATA+TGG + chr1.2:63463164-63463183 MS.gene07434:intron 25.0%
!! AAAGAGCTCTTTTCAAAATA+TGG - chr1.2:63464251-63464270 None:intergenic 25.0%
!! GTTTGAATGCAGAATTTTAA+AGG + chr1.2:63464670-63464689 MS.gene07434:intron 25.0%
!! TTTTGTTAACTGATCATTAG+TGG + chr1.2:63464302-63464321 MS.gene07434:intron 25.0%
!!! AATGCAGAATTTTAAAGGAA+GGG + chr1.2:63464675-63464694 MS.gene07434:intron 25.0%
!!! CGTATGTCATTTTTTTTGTT+AGG - chr1.2:63463521-63463540 None:intergenic 25.0%
!!! TTTTCAAAATATGGATTGGA+TGG - chr1.2:63464242-63464261 None:intergenic 25.0%
AAAAATGGAGTGAATACAGA+TGG + chr1.2:63463590-63463609 MS.gene07434:CDS 30.0%
ATACTTAAAATGAATGCGGA+TGG + chr1.2:63462987-63463006 MS.gene07434:intron 30.0%
ATTTACGTATAGTCTACCAA+CGG - chr1.2:63463081-63463100 None:intergenic 30.0%
CAAAAAAAATGACATACGAC+AGG + chr1.2:63463523-63463542 MS.gene07434:intron 30.0%
CTAAACTATTCATCCATCTT+TGG + chr1.2:63464640-63464659 MS.gene07434:intron 30.0%
CTTTATGGAATTCAACATGA+AGG + chr1.2:63464910-63464929 MS.gene07434:intron 30.0%
GAAAATAGGATAGCAACTTA+TGG - chr1.2:63464499-63464518 None:intergenic 30.0%
GAAAGAATCTGAATTGAACA+TGG + chr1.2:63463721-63463740 MS.gene07434:CDS 30.0%
GAGGATATAACAGAAAACTA+GGG + chr1.2:63464009-63464028 MS.gene07434:intron 30.0%
GAGTAGATATCCTGTTTAAT+CGG - chr1.2:63463490-63463509 None:intergenic 30.0%
GATCCATTAGTGATATCATT+CGG + chr1.2:63462756-63462775 MS.gene07434:CDS 30.0%
GTTTGATGTGGTATTATATG+AGG + chr1.2:63463117-63463136 MS.gene07434:intron 30.0%
TACTTAAAATGAATGCGGAT+GGG + chr1.2:63462988-63463007 MS.gene07434:intron 30.0%
TATGGAGAGCTTATGAAAAT+AGG - chr1.2:63464513-63464532 None:intergenic 30.0%
TCACTTACCTATATAGAGAA+TGG - chr1.2:63464085-63464104 None:intergenic 30.0%
TTAACATTTGCAAATGCTTG+TGG + chr1.2:63464956-63464975 MS.gene07434:CDS 30.0%
TTATCTTAGCAAATGCATCT+CGG + chr1.2:63463324-63463343 MS.gene07434:intron 30.0%
! ACTGTTTTCATAAGCTACTA+TGG - chr1.2:63464531-63464550 None:intergenic 30.0%
! GCTCTTTTCAAAATATGGAT+TGG - chr1.2:63464246-63464265 None:intergenic 30.0%
! GTTAAAGTCTCTCTCAATTT+TGG - chr1.2:63464941-63464960 None:intergenic 30.0%
! TAAGACTAATGGATCCATAA+TGG - chr1.2:63463772-63463791 None:intergenic 30.0%
!! AATCAAAAGCATTTGGAATG+AGG + chr1.2:63463919-63463938 MS.gene07434:CDS 30.0%
!! AATTTTAAAGGAAGGGTAAG+TGG + chr1.2:63464682-63464701 MS.gene07434:CDS 30.0%
!! ATTTTAAAGGAAGGGTAAGT+GGG + chr1.2:63464683-63464702 MS.gene07434:CDS 30.0%
!! GAATGCAGAATTTTAAAGGA+AGG + chr1.2:63464674-63464693 MS.gene07434:intron 30.0%
!! TGGTTCTGAAATAAGACTAA+TGG - chr1.2:63463783-63463802 None:intergenic 30.0%
AAAAATGACATACGACAGGT+AGG + chr1.2:63463527-63463546 MS.gene07434:intron 35.0%
AAAATGACATACGACAGGTA+GGG + chr1.2:63463528-63463547 MS.gene07434:intron 35.0%
AAGAAGCTGTTATGTCTCTA+TGG + chr1.2:63464146-63464165 MS.gene07434:CDS 35.0%
AAGAGACCCTTCTATATTTG+GGG + chr1.2:63464777-63464796 MS.gene07434:CDS 35.0%
AAGCATACCCCAAATATAGA+AGG - chr1.2:63464787-63464806 None:intergenic 35.0%
AAGCTGCTTATTATCACTGA+TGG + chr1.2:63464181-63464200 MS.gene07434:CDS 35.0%
AGCATACCCCAAATATAGAA+GGG - chr1.2:63464786-63464805 None:intergenic 35.0%
ATAACAGCTTCTTCATTCTC+AGG - chr1.2:63464139-63464158 None:intergenic 35.0%
ATAGCCTCCGTAAATATGAA+TGG + chr1.2:63463376-63463395 MS.gene07434:intron 35.0%
ATTATCACTGATGGAGAGAA+GGG + chr1.2:63464190-63464209 MS.gene07434:CDS 35.0%
CAAGAGACCCTTCTATATTT+GGG + chr1.2:63464776-63464795 MS.gene07434:CDS 35.0%
CGGAGGCTATTAAATTGAAA+TGG - chr1.2:63463366-63463385 None:intergenic 35.0%
CGTCCTTCCATTCATATTTA+CGG - chr1.2:63463386-63463405 None:intergenic 35.0%
CTATACGTAAATATTCACCG+AGG + chr1.2:63463089-63463108 MS.gene07434:intron 35.0%
GACTAGATTGATATGGTCAA+GGG + chr1.2:63463463-63463482 MS.gene07434:intron 35.0%
GCAGACATCTTGAAGAAAAA+TGG + chr1.2:63463575-63463594 MS.gene07434:CDS 35.0%
GGAAGTCTATTAAATGATGG+AGG + chr1.2:63463990-63464009 MS.gene07434:intron 35.0%
GGAGGATATAACAGAAAACT+AGG + chr1.2:63464008-63464027 MS.gene07434:intron 35.0%
GTAAATATTCACCGAGGTTA+TGG + chr1.2:63463095-63463114 MS.gene07434:intron 35.0%
TATGAGGGACTAGATTGATA+TGG + chr1.2:63463456-63463475 MS.gene07434:intron 35.0%
TATTATCACTGATGGAGAGA+AGG + chr1.2:63464189-63464208 MS.gene07434:CDS 35.0%
TCAGTAACATATCAGCACTA+GGG - chr1.2:63463703-63463722 None:intergenic 35.0%
TGTTCGAAACAGTCTTACAA+GGG - chr1.2:63464450-63464469 None:intergenic 35.0%
TTCAGTAACATATCAGCACT+AGG - chr1.2:63463704-63463723 None:intergenic 35.0%
TTGCTAAGATAACACAACTG+AGG - chr1.2:63463316-63463335 None:intergenic 35.0%
TTGTTCGAAACAGTCTTACA+AGG - chr1.2:63464451-63464470 None:intergenic 35.0%
TTTACGTATAGTCTACCAAC+GGG - chr1.2:63463080-63463099 None:intergenic 35.0%
TTTGTGACATTGAGGAAAGA+TGG + chr1.2:63463650-63463669 MS.gene07434:CDS 35.0%
! GTATTTTTCTGTCACTAGAG+TGG - chr1.2:63464834-63464853 None:intergenic 35.0%
AAATGACATACGACAGGTAG+GGG + chr1.2:63463529-63463548 MS.gene07434:intron 40.0%
AAGCCTGACATTTGGATCAT+AGG - chr1.2:63463864-63463883 None:intergenic 40.0%
ACCACATCAAACCATAACCT+CGG - chr1.2:63463109-63463128 None:intergenic 40.0%
ACCATGTAGATCTGCTCATA+TGG + chr1.2:63463799-63463818 MS.gene07434:CDS 40.0%
AGCAATGTGTACAACACAGA+AGG + chr1.2:63464979-63464998 MS.gene07434:CDS 40.0%
AGTCTTACAAGGGCTTATGT+CGG - chr1.2:63464440-63464459 None:intergenic 40.0%
ATTAAGAACCTTGCCGATGA+AGG - chr1.2:63462913-63462932 None:intergenic 40.0%
ATTGAGGAAAGATGGAGAGA+GGG + chr1.2:63463658-63463677 MS.gene07434:CDS 40.0%
CCTCCGTAAATATGAATGGA+AGG + chr1.2:63463380-63463399 MS.gene07434:intron 40.0%
CCTTCCATTCATATTTACGG+AGG - chr1.2:63463383-63463402 None:intergenic 40.0%
GCAAGAGACCCTTCTATATT+TGG + chr1.2:63464775-63464794 MS.gene07434:CDS 40.0%
GCAATGTGTACAACACAGAA+GGG + chr1.2:63464980-63464999 MS.gene07434:CDS 40.0%
GGACTAGATTGATATGGTCA+AGG + chr1.2:63463462-63463481 MS.gene07434:intron 40.0%
GGGTTGTAGATATGTCACTA+AGG + chr1.2:63464210-63464229 MS.gene07434:CDS 40.0%
TAAATCGCAGCTAATGCAAG+CGG - chr1.2:63463038-63463057 None:intergenic 40.0%
TCGCCGAATGATATCACTAA+TGG - chr1.2:63462762-63462781 None:intergenic 40.0%
TGTCCTATGATCCAAATGTC+AGG + chr1.2:63463858-63463877 MS.gene07434:CDS 40.0%
TTACGTATAGTCTACCAACG+GGG - chr1.2:63463079-63463098 None:intergenic 40.0%
! GAAAGCATAAGATTCAGCCA+AGG - chr1.2:63462823-63462842 None:intergenic 40.0%
! GAATGAGGCTGATTTCATCA+AGG + chr1.2:63463934-63463953 MS.gene07434:CDS 40.0%
! GATTTTGTTCCAGACACATC+TGG + chr1.2:63462792-63462811 MS.gene07434:CDS 40.0%
! TGGTGTTCTTTTTGACACAG+AGG + chr1.2:63463610-63463629 MS.gene07434:CDS 40.0%
!! GGTCTGGAATCAAAAGCATT+TGG + chr1.2:63463912-63463931 MS.gene07434:CDS 40.0%
!!! CATTGGCTTTTGTGACATTG+AGG + chr1.2:63463642-63463661 MS.gene07434:CDS 40.0%
AAGGATACACCAGATGTGTC+TGG - chr1.2:63462804-63462823 None:intergenic 45.0%
ACCGAGGTTATGGTTTGATG+TGG + chr1.2:63463105-63463124 MS.gene07434:intron 45.0%
ACCTTCTCTAGCAGCTTTCA+TGG - chr1.2:63463828-63463847 None:intergenic 45.0%
AGACACATCTGGTGTATCCT+TGG + chr1.2:63462803-63462822 MS.gene07434:CDS 45.0%
ATGAAAGCTGCTAGAGAAGG+TGG + chr1.2:63463827-63463846 MS.gene07434:CDS 45.0%
CAAATGTCAGGCTTCCTTTG+TGG + chr1.2:63463870-63463889 MS.gene07434:CDS 45.0%
CACAAAGGAAGCCTGACATT+TGG - chr1.2:63463872-63463891 None:intergenic 45.0%
CATTGAGGAAAGATGGAGAG+AGG + chr1.2:63463657-63463676 MS.gene07434:CDS 45.0%
GCCATATGAGCAGATCTACA+TGG - chr1.2:63463803-63463822 None:intergenic 45.0%
GCTTGCATTAGCTGCGATTT+AGG + chr1.2:63463037-63463056 MS.gene07434:intron 45.0%
GTGAAGGCAATTGACACAAC+TGG + chr1.2:63464712-63464731 MS.gene07434:CDS 45.0%
TAGGGGATGATGAGTTTGGA+AGG + chr1.2:63463546-63463565 MS.gene07434:CDS 45.0%
TATGCTTTCATCAAAGCCCC+TGG + chr1.2:63462834-63462853 MS.gene07434:CDS 45.0%
!!! GGTGCTGGTGATTCTTTTGT+TGG + chr1.2:63464733-63464752 MS.gene07434:CDS 45.0%
CACAGAGGCAAGAACTGCAT+TGG + chr1.2:63463625-63463644 MS.gene07434:CDS 50.0%
CAGGTAGGGGATGATGAGTT+TGG + chr1.2:63463542-63463561 MS.gene07434:intron 50.0%
CTAATCGAGAGTTTCCCCGT+TGG + chr1.2:63463062-63463081 MS.gene07434:intron 50.0%
GCAATTGACACAACTGGTGC+TGG + chr1.2:63464718-63464737 MS.gene07434:CDS 50.0%
GCCATGAAAGCTGCTAGAGA+AGG + chr1.2:63463824-63463843 MS.gene07434:CDS 50.0%
GCTTGTGCTGTGTCCAAACT+TGG + chr1.2:63462876-63462895 MS.gene07434:CDS 50.0%
GGTCAAGGGACCGATTAAAC+AGG + chr1.2:63463477-63463496 MS.gene07434:intron 50.0%
TGCACTTCCAACTGCTGAAG+AGG + chr1.2:63465012-63465031 MS.gene07434:CDS 50.0%
TGGTGCACTTCTCAGAGATG+TGG + chr1.2:63464753-63464772 MS.gene07434:CDS 50.0%
TGTGCTGTGTCCAAACTTGG+TGG + chr1.2:63462879-63462898 MS.gene07434:CDS 50.0%
TTCTGAGCCTCTTCAGCAGT+TGG - chr1.2:63465022-63465041 None:intergenic 50.0%
! AGCAGTTGGAAGTGCAGGAA+TGG - chr1.2:63465008-63465027 None:intergenic 50.0%
! GGTAAGTGGGTTCTCAGTGA+AGG + chr1.2:63464696-63464715 MS.gene07434:CDS 50.0%
! TCTTCAGCAGTTGGAAGTGC+AGG - chr1.2:63465013-63465032 None:intergenic 50.0%
ACAGCACAAGCCACATTGGC+AGG - chr1.2:63462867-63462886 None:intergenic 55.0%
AGCACAAGCCACATTGGCAG+GGG - chr1.2:63462865-63462884 None:intergenic 55.0%
CAATGCTGCCTTCATCGGCA+AGG + chr1.2:63462902-63462921 MS.gene07434:CDS 55.0%
CAGCACAAGCCACATTGGCA+GGG - chr1.2:63462866-63462885 None:intergenic 55.0%
GCTTTCATCAAAGCCCCTGG+CGG + chr1.2:63462837-63462856 MS.gene07434:CDS 55.0%
GGACACAGCACAAGCCACAT+TGG - chr1.2:63462871-63462890 None:intergenic 55.0%
GGCAGCATTGCCACCAAGTT+TGG - chr1.2:63462892-63462911 None:intergenic 55.0%
GGTGGCAATGCTGCCTTCAT+CGG + chr1.2:63462897-63462916 MS.gene07434:CDS 55.0%
TCCTTTGTGGCCTTCTGCTG+AGG + chr1.2:63463883-63463902 MS.gene07434:CDS 55.0%
TCGCAGCTAATGCAAGCGGA+AGG - chr1.2:63463034-63463053 None:intergenic 55.0%
GACCTAGCAGCCTCAGCAGA+AGG - chr1.2:63463896-63463915 None:intergenic 60.0%
GCCTCAGCAGAAGGCCACAA+AGG - chr1.2:63463887-63463906 None:intergenic 60.0%
TCTGCTGAGGCTGCTAGGTC+TGG + chr1.2:63463896-63463915 MS.gene07434:CDS 60.0%
GGCCTTCTGCTGAGGCTGCT+AGG + chr1.2:63463891-63463910 MS.gene07434:CDS 65.0%
TGGCGGTGCCCCTGCCAATG+TGG + chr1.2:63462854-63462873 MS.gene07434:CDS 70.0%
!! ACATTGGCAGGGGCACCGCC+AGG - chr1.2:63462855-63462874 None:intergenic 70.0%
!! ATTGGCAGGGGCACCGCCAG+GGG - chr1.2:63462853-63462872 None:intergenic 70.0%
!! CATTGGCAGGGGCACCGCCA+GGG - chr1.2:63462854-63462873 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 63462741 63465069 63462741 ID=MS.gene07434
chr1.2 mRNA 63462741 63465069 63462741 ID=MS.gene07434.t1;Parent=MS.gene07434
chr1.2 exon 63462741 63462923 63462741 ID=MS.gene07434.t1.exon1;Parent=MS.gene07434.t1
chr1.2 CDS 63462741 63462923 63462741 ID=cds.MS.gene07434.t1;Parent=MS.gene07434.t1
chr1.2 exon 63463545 63463955 63463545 ID=MS.gene07434.t1.exon2;Parent=MS.gene07434.t1
chr1.2 CDS 63463545 63463955 63463545 ID=cds.MS.gene07434.t1;Parent=MS.gene07434.t1
chr1.2 exon 63464097 63464231 63464097 ID=MS.gene07434.t1.exon3;Parent=MS.gene07434.t1
chr1.2 CDS 63464097 63464231 63464097 ID=cds.MS.gene07434.t1;Parent=MS.gene07434.t1
chr1.2 exon 63464682 63464798 63464682 ID=MS.gene07434.t1.exon4;Parent=MS.gene07434.t1
chr1.2 CDS 63464682 63464798 63464682 ID=cds.MS.gene07434.t1;Parent=MS.gene07434.t1
chr1.2 exon 63464932 63465069 63464932 ID=MS.gene07434.t1.exon5;Parent=MS.gene07434.t1
chr1.2 CDS 63464932 63465069 63464932 ID=cds.MS.gene07434.t1;Parent=MS.gene07434.t1
Gene Sequence

>MS.gene07434

ATGTCAGGCTCAAAAGATCCATTAGTGATATCATTCGGCGAGATGCTCATAGATTTTGTTCCAGACACATCTGGTGTATCCTTGGCTGAATCTTATGCTTTCATCAAAGCCCCTGGCGGTGCCCCTGCCAATGTGGCTTGTGCTGTGTCCAAACTTGGTGGCAATGCTGCCTTCATCGGCAAGGTTCTTAATTACAAGCATTTCCCATTTTACTATCATGTTTATCGATTATTTTCTTTTCCATATATACTTAAAATGAATGCGGATGGGAGTTGACAAATCTAGTTAGACCTTCCGCTTGCATTAGCTGCGATTTAGGTTCTAATCGAGAGTTTCCCCGTTGGTAGACTATACGTAAATATTCACCGAGGTTATGGTTTGATGTGGTATTATATGAGGACGTGTCTAATCTAGTATACGTTTTTCTGAGTAAATATCCAATATGGTCATTGAAATTTATAGGACAACATCAACTTAGACTCGACATCATCAATATTAAAAAATGATTTCTAGAATTGTAAAATGTTAATTAGCATTACAATTTTTGACAGAACTCATAATATAGATTTATTCCTCAGTTGTGTTATCTTAGCAAATGCATCTCGGATTGACATTACTTACTCCATTTCAATTTAATAGCCTCCGTAAATATGAATGGAAGGACGAATTTGATTAACATCTTGCAATTTCAAAAATCATTATAGAATATTGATAATATGAGGGACTAGATTGATATGGTCAAGGGACCGATTAAACAGGATATCTACTCAAATCTATCCTAACAAAAAAAATGACATACGACAGGTAGGGGATGATGAGTTTGGAAGGATGCTAGCAGACATCTTGAAGAAAAATGGAGTGAATACAGATGGTGTTCTTTTTGACACAGAGGCAAGAACTGCATTGGCTTTTGTGACATTGAGGAAAGATGGAGAGAGGGAGTTCATGTTTTATAGAAACCCTAGTGCTGATATGTTACTGAAAGAATCTGAATTGAACATGGATATGATTAAGAATACAAAGATATTCCATTATGGATCCATTAGTCTTATTTCAGAACCATGTAGATCTGCTCATATGGCTGCCATGAAAGCTGCTAGAGAAGGTGGTGCTTTGTTGTCCTATGATCCAAATGTCAGGCTTCCTTTGTGGCCTTCTGCTGAGGCTGCTAGGTCTGGAATCAAAAGCATTTGGAATGAGGCTGATTTCATCAAGGTGCAATAATTGTTTGAATTTGAAATTTCTTTATGGAAGTCTATTAAATGATGGAGGATATAACAGAAAACTAGGGTTATTTTTCTTTTAAAAGAATCTGTAAAAGTGGTTGTATTAAAAAACTTACCATTCTCTATATAGGTAAGTGATGATGAAGTTCAATTTCTTACACAAAAAGATCCTGAGAATGAAGAAGCTGTTATGTCTCTATGGCATGACAAGTTGAAGCTGCTTATTATCACTGATGGAGAGAAGGGTTGTAGATATGTCACTAAGGTATTGTCCATCCAATCCATATTTTGAAAAGAGCTCTTTTAATTTTTAGCTAAATCAAAGCAATAAAGCATTTTGTTAACTGATCATTAGTGGTAGACTTACAACTTAATGATTTTGACTATACATTTGTTATCCCATTCAAGAAGATTATTTTTATCTATTCACAAATAGGGTATATTTGAATTGACTTGTTTGAGCTTATCTACCGACATAAGCCCTTGTAAGACTGTTTCGAACAATTTATATAAACAACTTACTAGATGTCCATAAGTTGCTATCCTATTTTCATAAGCTCTCCATAGTAGCTTATGAAAACAGTTTATACCCAGCTTGACTTAATTTTATCTTTGTTACAGAGCTAACTTATAAGTATTTTATATGACAATAGCTTATACTAAAAGTGCTTAACTAAACTATTCATCCATCTTTGGAAATATTGTTTGAATGCAGAATTTTAAAGGAAGGGTAAGTGGGTTCTCAGTGAAGGCAATTGACACAACTGGTGCTGGTGATTCTTTTGTTGGTGCACTTCTCAGAGATGTGGCAAGAGACCCTTCTATATTTGGGGTATGCTTTCTCTCTCAAATACAATCTAAGATCCACTCTAGTGACAGAAAAATACTAATTATGAGTCTAGCCTTTGTAAAAATAATTCTCATTGGTTGAAATTTTTGTTTGCTTTATGGAATTCAACATGAAGGATGAACCAAAATTGAGAGAGACTTTAACATTTGCAAATGCTTGTGGAGCAATGTGTACAACACAGAAGGGAGCCATTCCTGCACTTCCAACTGCTGAAGAGGCTCAGAAATTTATTTCCAGCTCTAAAGCCAACTAA
Protein sequence

>MS.gene07434.t1

MSGSKDPLVISFGEMLIDFVPDTSGVSLAESYAFIKAPGGAPANVACAVSKLGGNAAFIGKVGDDEFGRMLADILKKNGVNTDGVLFDTEARTALAFVTLRKDGEREFMFYRNPSADMLLKESELNMDMIKNTKIFHYGSISLISEPCRSAHMAAMKAAREGGALLSYDPNVRLPLWPSAEAARSGIKSIWNEADFIKVSDDEVQFLTQKDPENEEAVMSLWHDKLKLLIITDGEKGCRYVTKNFKGRVSGFSVKAIDTTGAGDSFVGALLRDVARDPSIFGDEPKLRETLTFANACGAMCTTQKGAIPALPTAEEAQKFISSSKAN