Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074520.t1 | XP_013451319.1 | 91 | 885 | 75 | 1 | 1 | 880 | 1 | 885 | 0.00E+00 | 1547.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074520.t1 | A0A072U6K8 | 91.0 | 885 | 75 | 1 | 1 | 880 | 1 | 885 | 0.0e+00 | 1547.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049850 | MS.gene074520 | 0.812081 | 5.07E-51 | -1.69E-46 |
| MS.gene050020 | MS.gene074520 | 0.842816 | 2.05E-58 | -1.69E-46 |
| MS.gene050901 | MS.gene074520 | 0.801686 | 8.01E-49 | -1.69E-46 |
| MS.gene051199 | MS.gene074520 | 0.836863 | 7.29E-57 | -1.69E-46 |
| MS.gene051247 | MS.gene074520 | 0.810668 | 1.03E-50 | -1.69E-46 |
| MS.gene05157 | MS.gene074520 | 0.820642 | 6.16E-53 | -1.69E-46 |
| MS.gene051664 | MS.gene074520 | 0.816743 | 4.73E-52 | -1.69E-46 |
| MS.gene051719 | MS.gene074520 | 0.810925 | 9.05E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene074520 | 0.829612 | 4.67E-55 | -1.69E-46 |
| MS.gene051744 | MS.gene074520 | 0.805525 | 1.28E-49 | -1.69E-46 |
| MS.gene052456 | MS.gene074520 | 0.820024 | 8.53E-53 | -1.69E-46 |
| MS.gene052611 | MS.gene074520 | 0.806382 | 8.45E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene074520 | 0.806974 | 6.34E-50 | -1.69E-46 |
| MS.gene053383 | MS.gene074520 | 0.829203 | 5.87E-55 | -1.69E-46 |
| MS.gene054791 | MS.gene074520 | 0.804777 | 1.84E-49 | -1.69E-46 |
| MS.gene055359 | MS.gene074520 | 0.827241 | 1.74E-54 | -1.69E-46 |
| MS.gene055465 | MS.gene074520 | 0.812001 | 5.28E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene074520 | 0.822905 | 1.84E-53 | -1.69E-46 |
| MS.gene056005 | MS.gene074520 | 0.809023 | 2.32E-50 | -1.69E-46 |
| MS.gene056169 | MS.gene074520 | 0.807668 | 4.52E-50 | -1.69E-46 |
| MS.gene057022 | MS.gene074520 | 0.824812 | 6.59E-54 | -1.69E-46 |
| MS.gene057915 | MS.gene074520 | 0.807159 | 5.79E-50 | -1.69E-46 |
| MS.gene060519 | MS.gene074520 | 0.80198 | 6.97E-49 | -1.69E-46 |
| MS.gene060701 | MS.gene074520 | 0.820282 | 7.45E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074520.t1 | MTR_6g018770 | 93.785 | 885 | 50 | 1 | 1 | 880 | 1 | 885 | 0.0 | 1589 |
| MS.gene074520.t1 | MTR_7g082220 | 48.361 | 976 | 372 | 31 | 1 | 879 | 1 | 941 | 0.0 | 655 |
| MS.gene074520.t1 | MTR_4g008820 | 46.555 | 479 | 196 | 19 | 13 | 467 | 210 | 652 | 1.29e-81 | 277 |
| MS.gene074520.t1 | MTR_7g112030 | 36.538 | 104 | 64 | 2 | 770 | 873 | 807 | 908 | 1.50e-13 | 75.5 |
| MS.gene074520.t1 | MTR_1g083850 | 29.213 | 178 | 111 | 6 | 703 | 872 | 577 | 747 | 2.22e-13 | 74.7 |
| MS.gene074520.t1 | MTR_2g034810 | 25.000 | 184 | 119 | 7 | 698 | 875 | 753 | 923 | 7.89e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074520.t1 | AT1G67040 | 30.810 | 938 | 471 | 40 | 1 | 872 | 1 | 826 | 4.47e-80 | 276 |
| MS.gene074520.t1 | AT1G67040 | 30.704 | 938 | 470 | 41 | 1 | 872 | 1 | 824 | 2.42e-79 | 274 |
Find 158 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGAAAATGAAGATTTCT+TGG | 0.196487 | 6.1:-4787665 | None:intergenic |
| ATGCATGAAGGCTGAGATTT+TGG | 0.209163 | 6.1:+4790243 | MS.gene074520:CDS |
| TTCTGTCACAATGCCGTTAT+TGG | 0.209571 | 6.1:-4788046 | None:intergenic |
| GATTCTTTGAACAAGTTTAA+AGG | 0.217010 | 6.1:+4787120 | MS.gene074520:CDS |
| TGAAGATGTGCTTCAAATTT+TGG | 0.251852 | 6.1:+4790411 | MS.gene074520:CDS |
| TTCATTGCTGAATTGGTTCT+TGG | 0.260531 | 6.1:+4789995 | MS.gene074520:CDS |
| TAGTTCACCTCTAAAGAAAA+AGG | 0.274374 | 6.1:+4788818 | MS.gene074520:CDS |
| ACAAATCATGTTGGATTATT+CGG | 0.275766 | 6.1:+4789578 | MS.gene074520:CDS |
| GATCTTGGAACCTGGTTTGC+AGG | 0.281086 | 6.1:+4787972 | MS.gene074520:CDS |
| ATCAATTCGGTAAACAAGTT+TGG | 0.298864 | 6.1:-4789897 | None:intergenic |
| AATTGCTGCCAAAACTATTA+TGG | 0.298910 | 6.1:+4790181 | MS.gene074520:CDS |
| TTTGGATTGTAGATTGCTAA+TGG | 0.300946 | 6.1:+4787502 | MS.gene074520:intron |
| CCTTCATGTTTCAACCGTTC+AGG | 0.309083 | 6.1:-4789815 | None:intergenic |
| CAAACCGCATGGAGGCTTAA+AGG | 0.309387 | 6.1:+4788404 | MS.gene074520:CDS |
| ACCAAATGGAGTTGGGAATT+AGG | 0.310684 | 6.1:-4787156 | None:intergenic |
| GACATTTGCCATTGAACATT+TGG | 0.315673 | 6.1:-4789064 | None:intergenic |
| TGAGTCACTCATTGGGAAAA+TGG | 0.316669 | 6.1:+4790344 | MS.gene074520:CDS |
| TACTACCTTGTTCATCTTAT+CGG | 0.321674 | 6.1:-4788784 | None:intergenic |
| TGCAAGCACATATATTCTTC+TGG | 0.326935 | 6.1:-4788364 | None:intergenic |
| GCCATTGAACATTTGGTCAT+TGG | 0.337243 | 6.1:-4789057 | None:intergenic |
| TAAACACACCATAATAGTTT+TGG | 0.339049 | 6.1:-4790189 | None:intergenic |
| AGTTATCTTCATTGCTGAAT+TGG | 0.339654 | 6.1:+4789988 | MS.gene074520:CDS |
| TGATGATGGTGAGGAGTCTT+TGG | 0.341754 | 6.1:+4787690 | MS.gene074520:CDS |
| AACAGAAGCTGAAAGAATTA+AGG | 0.344196 | 6.1:+4788928 | MS.gene074520:CDS |
| CATTTGACATTAGAATTGTT+TGG | 0.355599 | 6.1:-4788738 | None:intergenic |
| TTTAATCGAAACCAACTTAA+GGG | 0.357961 | 6.1:+4790121 | MS.gene074520:CDS |
| TCAGGGGTCGATGATGTCTT+TGG | 0.362655 | 6.1:-4788878 | None:intergenic |
| GAAAATGAGGAGTTGGTTAC+TGG | 0.364580 | 6.1:+4788957 | MS.gene074520:CDS |
| GGAAGATGCAAGAAAACATT+TGG | 0.365373 | 6.1:-4788007 | None:intergenic |
| GCCTAATTCCCAACTCCATT+TGG | 0.368909 | 6.1:+4787155 | MS.gene074520:CDS |
| TCAGAACCTTGTCTGCTTGA+AGG | 0.375714 | 6.1:-4788675 | None:intergenic |
| TTTGCAATATCTTATCAATT+CGG | 0.382071 | 6.1:-4789910 | None:intergenic |
| TCTGGTATAGACAAGTCATT+AGG | 0.386944 | 6.1:+4788117 | MS.gene074520:CDS |
| TCATTTAACACAGGAAAGAT+AGG | 0.389980 | 6.1:+4789860 | MS.gene074520:CDS |
| GAAGAGTCCGAGAATTTCTT+CGG | 0.392103 | 6.1:+4787903 | MS.gene074520:CDS |
| ATCTCAGCCTTCATGCATAA+AGG | 0.401946 | 6.1:-4790238 | None:intergenic |
| AAGCTAGGTGGTGGTTGTAT+TGG | 0.402353 | 6.1:+4786453 | MS.gene074520:CDS |
| GATTTATCTCTCTTTGAAGA+TGG | 0.402536 | 6.1:-4787643 | None:intergenic |
| AATCAATCATGTTATAATTC+TGG | 0.408879 | 6.1:+4788099 | MS.gene074520:CDS |
| AACTAAACCAAGTAATTGAT+TGG | 0.409723 | 6.1:+4790317 | MS.gene074520:CDS |
| TTGGGAGATGAGTCACTCAT+TGG | 0.418329 | 6.1:+4790336 | MS.gene074520:CDS |
| CTCTTTCCCGAAGAAATTCT+CGG | 0.418867 | 6.1:-4787910 | None:intergenic |
| TTGGATTGTAGATTGCTAAT+GGG | 0.423160 | 6.1:+4787503 | MS.gene074520:intron |
| CTGGTATAGACAAGTCATTA+GGG | 0.423338 | 6.1:+4788118 | MS.gene074520:CDS |
| CACTTAAAACATCTTCTCTC+AGG | 0.424535 | 6.1:-4788896 | None:intergenic |
| TCATCTCCCAATCAATTACT+TGG | 0.431669 | 6.1:-4790324 | None:intergenic |
| CACATATATTCTTCTGGAAG+TGG | 0.436122 | 6.1:-4788358 | None:intergenic |
| GCCTCAGAAGCTTCGGAAAA+CGG | 0.442167 | 6.1:+4787747 | MS.gene074520:CDS |
| TTTGAGGCGGGTGTTGATAT+TGG | 0.445664 | 6.1:+4790388 | MS.gene074520:CDS |
| CAAACAGAAATCCCTTAAGT+TGG | 0.447740 | 6.1:-4790132 | None:intergenic |
| GTGAAAACATTTGAAACAAT+AGG | 0.449483 | 6.1:-4788192 | None:intergenic |
| TAAGAACAATTTATAGAGCC+AGG | 0.449521 | 6.1:-4789785 | None:intergenic |
| AAGAGTCCGAGAATTTCTTC+GGG | 0.450925 | 6.1:+4787904 | MS.gene074520:CDS |
| AGAAGAGCAGTAACTAGGTT+TGG | 0.451888 | 6.1:+4787781 | MS.gene074520:CDS |
| GAGTCTTGTAGCTAGGTTGA+TGG | 0.454113 | 6.1:+4787606 | MS.gene074520:CDS |
| ATTAAGGTCTAGAGAAAATG+AGG | 0.458749 | 6.1:+4788944 | MS.gene074520:CDS |
| TTTGGTCATTGGAACATGTT+TGG | 0.464261 | 6.1:-4789046 | None:intergenic |
| GTCTAGAGAAAATGAGGAGT+TGG | 0.467713 | 6.1:+4788950 | MS.gene074520:CDS |
| CTGTTTGTAGCCTGCAAACC+AGG | 0.470209 | 6.1:-4787982 | None:intergenic |
| TGTTCTTACCAAATGGAGTT+GGG | 0.472016 | 6.1:-4787163 | None:intergenic |
| GATGCAAATTTGATCTAGAA+AGG | 0.476115 | 6.1:+4788649 | MS.gene074520:CDS |
| GAAGCTTCCAAGACTGATCC+AGG | 0.477697 | 6.1:-4789629 | None:intergenic |
| GATTAAGAAGTGGGAATGTA+TGG | 0.479978 | 6.1:+4790285 | MS.gene074520:CDS |
| CACCGACTTCTCTTCAGCAT+CGG | 0.480466 | 6.1:+4788212 | MS.gene074520:CDS |
| ATCGAGACTACTGGAAGAAA+AGG | 0.481977 | 6.1:-4789651 | None:intergenic |
| TGAGCCTTCATCGAGACTAC+TGG | 0.485738 | 6.1:-4789660 | None:intergenic |
| TAAGAGTGAGATTAAGAAGT+GGG | 0.487969 | 6.1:+4790276 | MS.gene074520:CDS |
| AGTGGAAATAAAGACTTTGT+CGG | 0.490289 | 6.1:+4788570 | MS.gene074520:CDS |
| AGAAGCGGCTACTAAGATCT+TGG | 0.491388 | 6.1:+4787957 | MS.gene074520:CDS |
| AGTCAAGGCCTCAGAAGCTT+CGG | 0.491390 | 6.1:+4787740 | MS.gene074520:CDS |
| AGAGGTGAACTAAAGGTAGA+TGG | 0.495533 | 6.1:-4788807 | None:intergenic |
| TCTCAGTCCTGGATCAGTCT+TGG | 0.495904 | 6.1:+4789622 | MS.gene074520:CDS |
| ACTAAACCAAGTAATTGATT+GGG | 0.497729 | 6.1:+4790318 | MS.gene074520:CDS |
| TAACGGCATTGTGACAGAAA+TGG | 0.498435 | 6.1:+4788050 | MS.gene074520:CDS |
| TTTCTTTAGAGGTGAACTAA+AGG | 0.500467 | 6.1:-4788814 | None:intergenic |
| CATAAAACTCAAACACAAGA+AGG | 0.500478 | 6.1:+4788456 | MS.gene074520:CDS |
| TCAAAGTGTCCTACCAATAA+CGG | 0.502704 | 6.1:+4788033 | MS.gene074520:CDS |
| AAGATCATAGCTCATGTTGA+TGG | 0.503734 | 6.1:+4788300 | MS.gene074520:CDS |
| GAAATTCTCGGACTCTTCAA+AGG | 0.504286 | 6.1:-4787898 | None:intergenic |
| ATGTTCTTACCAAATGGAGT+TGG | 0.504634 | 6.1:-4787164 | None:intergenic |
| TCTAATGTCAAATGTAAAAG+AGG | 0.505745 | 6.1:+4788747 | MS.gene074520:CDS |
| ATTGGTAGGACACTTTGAAA+TGG | 0.506348 | 6.1:-4788028 | None:intergenic |
| ACGAGAGAAGAGCAGTAACT+AGG | 0.521472 | 6.1:+4787776 | MS.gene074520:CDS |
| TGGGAGATGAGTCACTCATT+GGG | 0.526532 | 6.1:+4790337 | MS.gene074520:CDS |
| TCCAATGACCAAATGTTCAA+TGG | 0.528320 | 6.1:+4789056 | MS.gene074520:CDS |
| AAGAAGAATAATCAAAAGCT+AGG | 0.529032 | 6.1:+4786438 | MS.gene074520:CDS |
| AGTGATGATGCTAGTGTGAA+TGG | 0.540323 | 6.1:+4786390 | MS.gene074520:CDS |
| AGTAGTCTCGATGAAGGCTC+AGG | 0.544009 | 6.1:+4789662 | MS.gene074520:CDS |
| CATGGAGGCTTAAAGGATGA+TGG | 0.544031 | 6.1:+4788411 | MS.gene074520:CDS |
| TCTTCCAGTAGTCTCGATGA+AGG | 0.544529 | 6.1:+4789656 | MS.gene074520:CDS |
| TTAAGAGTGAGATTAAGAAG+TGG | 0.550047 | 6.1:+4790275 | MS.gene074520:CDS |
| AAGAAGTGGGAATGTATGGT+TGG | 0.555304 | 6.1:+4790289 | MS.gene074520:CDS |
| AAAATTCCTCTGCGTAGCAT+CGG | 0.555522 | 6.1:-4790101 | None:intergenic |
| CATGTTTCAACCGTTCAGGT+TGG | 0.559219 | 6.1:-4789811 | None:intergenic |
| TGTTTAAGTCATGGTGTGCA+TGG | 0.560555 | 6.1:+4790206 | MS.gene074520:CDS |
| ACTTAAAACATCTTCTCTCA+GGG | 0.561542 | 6.1:-4788895 | None:intergenic |
| CATGAGCTATGATCTTCTCC+TGG | 0.566492 | 6.1:-4788293 | None:intergenic |
| AGGTCAAAGCTGCGAATGCA+AGG | 0.569077 | 6.1:+4787713 | MS.gene074520:CDS |
| TGTAGTTCTTCTCAGAAGCC+AGG | 0.569110 | 6.1:+4788275 | MS.gene074520:CDS |
| AAACAAGTTTATTAGCGTGA+TGG | 0.570139 | 6.1:-4787873 | None:intergenic |
| CAGTGTGAGACAAATCATGT+TGG | 0.571406 | 6.1:+4789569 | MS.gene074520:intron |
| ATTGCTAATGGGAACAGTCA+AGG | 0.571532 | 6.1:+4787514 | MS.gene074520:CDS |
| AAGATTGACAGAAAGCAAGC+TGG | 0.574839 | 6.1:+4789952 | MS.gene074520:CDS |
| TGACAGAAATGGCTGGAACT+CGG | 0.575576 | 6.1:+4788061 | MS.gene074520:CDS |
| AATAATCAAAAGCTAGGTGG+TGG | 0.577202 | 6.1:+4786444 | MS.gene074520:CDS |
| AATGGTAATCATCTCAGTCC+TGG | 0.577258 | 6.1:+4789611 | MS.gene074520:CDS |
| CGCCGATGCTGAAGAGAAGT+CGG | 0.577797 | 6.1:-4788214 | None:intergenic |
| CGAATGCAAGGCATGAGTCA+AGG | 0.578523 | 6.1:+4787725 | MS.gene074520:CDS |
| AGTCTTGTAGCTAGGTTGAT+GGG | 0.578858 | 6.1:+4787607 | MS.gene074520:CDS |
| AATTCTTGAAGAATCAATGC+AGG | 0.584695 | 6.1:-4788999 | None:intergenic |
| TTGCATCTATCTGCCTTCGT+AGG | 0.585296 | 6.1:-4788633 | None:intergenic |
| GCAACTTCAAGCACTGTGAG+TGG | 0.585693 | 6.1:+4788552 | MS.gene074520:CDS |
| GGCATTGTGACAGAAATGGC+TGG | 0.587128 | 6.1:+4788054 | MS.gene074520:CDS |
| AAGCACCGAGTCTTGTAGCT+AGG | 0.588985 | 6.1:+4787599 | MS.gene074520:CDS |
| GCTACTAAGATCTTGGAACC+TGG | 0.592217 | 6.1:+4787964 | MS.gene074520:CDS |
| AAGCTCAAGGTTGATAGAAG+CGG | 0.592843 | 6.1:+4787942 | MS.gene074520:CDS |
| TTATTCGGAACCTCTTGCAA+TGG | 0.593405 | 6.1:+4789593 | MS.gene074520:CDS |
| GAGATGATTACCATTGCAAG+AGG | 0.593654 | 6.1:-4789603 | None:intergenic |
| AGATGAGACTAACCAGGAGG+AGG | 0.594237 | 6.1:-4786546 | None:intergenic |
| GTGGGAATGTATGGTTGGCA+TGG | 0.594355 | 6.1:+4790294 | MS.gene074520:CDS |
| AATGTCACTAGGAGCAATGA+GGG | 0.595121 | 6.1:+4790019 | MS.gene074520:CDS |
| AAAGGCTCCTTTATGCATGA+AGG | 0.595904 | 6.1:+4790231 | MS.gene074520:CDS |
| TGGTTCTTGGAAATGTCACT+AGG | 0.598922 | 6.1:+4790008 | MS.gene074520:CDS |
| CCTGAACGGTTGAAACATGA+AGG | 0.602964 | 6.1:+4789815 | MS.gene074520:CDS |
| AAAGCCTAAGTGGTCGAACT+CGG | 0.604253 | 6.1:+4788601 | MS.gene074520:CDS |
| TCCTGTGTTAAATGATGCTG+CGG | 0.608805 | 6.1:-4789852 | None:intergenic |
| ATAAAACTCAAACACAAGAA+GGG | 0.612050 | 6.1:+4788457 | MS.gene074520:CDS |
| ATCAACCTAGCTACAAGACT+CGG | 0.612572 | 6.1:-4787604 | None:intergenic |
| AGGAAACCTTCAAGCAGACA+AGG | 0.614022 | 6.1:+4788669 | MS.gene074520:CDS |
| TTATCCGAGTTCGACCACTT+AGG | 0.615870 | 6.1:-4788605 | None:intergenic |
| ATGCAAGAAATGAGAAGCTG+TGG | 0.616016 | 6.1:-4790052 | None:intergenic |
| AAGAACAATTTATAGAGCCA+GGG | 0.617947 | 6.1:-4789784 | None:intergenic |
| AATGTCAAATGTAAAAGAGG+AGG | 0.620342 | 6.1:+4788750 | MS.gene074520:CDS |
| GTTCTTACGACCAACCTGAA+CGG | 0.622153 | 6.1:+4789801 | MS.gene074520:CDS |
| GTCACAATGCCGTTATTGGT+AGG | 0.622935 | 6.1:-4788042 | None:intergenic |
| TGATGGTGAGGAGTCTTTGG+AGG | 0.623700 | 6.1:+4787693 | MS.gene074520:CDS |
| GATTGATTGTGTATATCTTG+TGG | 0.628394 | 6.1:-4788084 | None:intergenic |
| TTCTGATAGTGATGATGGTG+AGG | 0.629680 | 6.1:+4787681 | MS.gene074520:CDS |
| TCCGCAGCATCATTTAACAC+AGG | 0.629948 | 6.1:+4789851 | MS.gene074520:CDS |
| GTCATGGTGTGCATGGACAA+AGG | 0.631811 | 6.1:+4790213 | MS.gene074520:CDS |
| TCGGATAAGATCTCCTACGA+AGG | 0.632427 | 6.1:+4788620 | MS.gene074520:CDS |
| ATTATGGTGTGTTTAAGTCA+TGG | 0.635508 | 6.1:+4790197 | MS.gene074520:CDS |
| ATTGATATCTGTTCTGAATG+CGG | 0.636306 | 6.1:+4789019 | MS.gene074520:CDS |
| AGAGTACATCTCGAAGCTCA+AGG | 0.642881 | 6.1:+4787929 | MS.gene074520:CDS |
| GTTCAATGGCAAATGTCCCA+AGG | 0.650827 | 6.1:+4789070 | MS.gene074520:CDS |
| AAATGTCACTAGGAGCAATG+AGG | 0.653408 | 6.1:+4790018 | MS.gene074520:CDS |
| AAGAATAATCAAAAGCTAGG+TGG | 0.660457 | 6.1:+4786441 | MS.gene074520:CDS |
| GTCACTAGGAGCAATGAGGG+AGG | 0.676197 | 6.1:+4790022 | MS.gene074520:CDS |
| GGTTTGAATCAAAGCCTAAG+TGG | 0.679677 | 6.1:+4788591 | MS.gene074520:CDS |
| TGGTATAGACAAGTCATTAG+GGG | 0.687079 | 6.1:+4788119 | MS.gene074520:CDS |
| AAATACCGATAAGATGAACA+AGG | 0.690927 | 6.1:+4788779 | MS.gene074520:CDS |
| TCATCCTTTAAGCCTCCATG+CGG | 0.694997 | 6.1:-4788408 | None:intergenic |
| TCAGAAGCTTCGGAAAACGG+AGG | 0.698643 | 6.1:+4787750 | MS.gene074520:CDS |
| AGACAAGGTTCTGATGCACA+AGG | 0.700943 | 6.1:+4788684 | MS.gene074520:CDS |
| GATTCATCAAGCAAACCGCA+TGG | 0.702267 | 6.1:+4788393 | MS.gene074520:CDS |
| CTTAAAACATCTTCTCTCAG+GGG | 0.725373 | 6.1:-4788894 | None:intergenic |
| TCATCAAGCAAACCGCATGG+AGG | 0.732965 | 6.1:+4788396 | MS.gene074520:CDS |
| TTGCAACCGATGCTACGCAG+AGG | 0.744918 | 6.1:+4790095 | MS.gene074520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATAATTTATATTTATT+TGG | + | chr6.1:4787484-4787503 | MS.gene074520:intron | 0.0% |
| !! | ATTTAAGAAAATAATAGAAA+TGG | - | chr6.1:4786871-4786890 | None:intergenic | 10.0% |
| !! | TTTCTTAAATAGATGAATAA+AGG | + | chr6.1:4786881-4786900 | MS.gene074520:intron | 15.0% |
| !!! | CATTGATTATAATGAAAATA+AGG | - | chr6.1:4789207-4789226 | None:intergenic | 15.0% |
| !!! | TCATTTTCTCAAATTATTAT+TGG | + | chr6.1:4789354-4789373 | MS.gene074520:intron | 15.0% |
| !! | AATCAATCATGTTATAATTC+TGG | + | chr6.1:4788099-4788118 | MS.gene074520:CDS | 20.0% |
| !! | ATATGTTGGATATTAGTTAT+GGG | + | chr6.1:4789262-4789281 | MS.gene074520:intron | 20.0% |
| !! | GAATATAATCAATGTATTGA+TGG | - | chr6.1:4789326-4789345 | None:intergenic | 20.0% |
| !! | TTTGCAATATCTTATCAATT+CGG | - | chr6.1:4789913-4789932 | None:intergenic | 20.0% |
| !!! | AAAGAGTTTTTTCTTATACT+CGG | + | chr6.1:4789440-4789459 | MS.gene074520:intron | 20.0% |
| !!! | CAAATTTCAATCATTCTTTT+AGG | + | chr6.1:4787442-4787461 | MS.gene074520:intron | 20.0% |
| !!! | TGCAAAGTTTAAATTCTTTT+TGG | + | chr6.1:4789927-4789946 | MS.gene074520:CDS | 20.0% |
| !!! | TTGTCTAATTGTTATTTCTT+TGG | + | chr6.1:4789124-4789143 | MS.gene074520:intron | 20.0% |
| !!! | TTTTAATTGACATCGTTTTT+TGG | + | chr6.1:4789228-4789247 | MS.gene074520:intron | 20.0% |
| ! | AAAAGCTTTCTTATAGATTG+CGG | + | chr6.1:4787236-4787255 | MS.gene074520:intron | 25.0% |
| ! | AACAGTCTAAATTTCAAACT+CGG | - | chr6.1:4787369-4787388 | None:intergenic | 25.0% |
| ! | AACTAAACCAAGTAATTGAT+TGG | + | chr6.1:4790317-4790336 | MS.gene074520:CDS | 25.0% |
| ! | AAGAAGAATAATCAAAAGCT+AGG | + | chr6.1:4786438-4786457 | MS.gene074520:CDS | 25.0% |
| ! | ACAAATCATGTTGGATTATT+CGG | + | chr6.1:4789578-4789597 | MS.gene074520:CDS | 25.0% |
| ! | ACTAAACCAAGTAATTGATT+GGG | + | chr6.1:4790318-4790337 | MS.gene074520:CDS | 25.0% |
| ! | ATAAAACTCAAACACAAGAA+GGG | + | chr6.1:4788457-4788476 | MS.gene074520:CDS | 25.0% |
| ! | ATCACCTACATTTACTAATA+AGG | - | chr6.1:4789176-4789195 | None:intergenic | 25.0% |
| ! | ATCAGAAAATGAAGATTTCT+TGG | - | chr6.1:4787668-4787687 | None:intergenic | 25.0% |
| ! | CATATGTTGGATATTAGTTA+TGG | + | chr6.1:4789261-4789280 | MS.gene074520:intron | 25.0% |
| ! | CATTTGACATTAGAATTGTT+TGG | - | chr6.1:4788741-4788760 | None:intergenic | 25.0% |
| ! | GAGTATAAGAAAAAACTCTT+TGG | - | chr6.1:4789441-4789460 | None:intergenic | 25.0% |
| ! | GATTCTTTGAACAAGTTTAA+AGG | + | chr6.1:4787120-4787139 | MS.gene074520:CDS | 25.0% |
| ! | TATATATCACCTATGAAACA+CGG | + | chr6.1:4786606-4786625 | MS.gene074520:intron | 25.0% |
| ! | TATCATATGTTCTTACCAAA+TGG | - | chr6.1:4787173-4787192 | None:intergenic | 25.0% |
| ! | TATCCCTTATTAGTAAATGT+AGG | + | chr6.1:4789169-4789188 | MS.gene074520:intron | 25.0% |
| ! | TATGTTGGATATTAGTTATG+GGG | + | chr6.1:4789263-4789282 | MS.gene074520:intron | 25.0% |
| ! | TCACCTACATTTACTAATAA+GGG | - | chr6.1:4789175-4789194 | None:intergenic | 25.0% |
| ! | TCTAATGTCAAATGTAAAAG+AGG | + | chr6.1:4788747-4788766 | MS.gene074520:CDS | 25.0% |
| ! | TTTAATCGAAACCAACTTAA+GGG | + | chr6.1:4790121-4790140 | MS.gene074520:CDS | 25.0% |
| ! | TTTCAAATGCGAAAAAAAGT+GGG | + | chr6.1:4787539-4787558 | MS.gene074520:CDS | 25.0% |
| !! | ATATCCAACATATGATTTGT+AGG | - | chr6.1:4789255-4789274 | None:intergenic | 25.0% |
| !! | CAAAAAGTGATAATGAGATT+AGG | + | chr6.1:4788847-4788866 | MS.gene074520:CDS | 25.0% |
| !! | GTGAAAACATTTGAAACAAT+AGG | - | chr6.1:4788195-4788214 | None:intergenic | 25.0% |
| !! | TAAACACACCATAATAGTTT+TGG | - | chr6.1:4790192-4790211 | None:intergenic | 25.0% |
| !! | TTCAGTGTAATTTTATGTGT+TGG | + | chr6.1:4786684-4786703 | MS.gene074520:intron | 25.0% |
| !! | TTGAAGATCTTGTAGATTTT+AGG | + | chr6.1:4790446-4790465 | MS.gene074520:CDS | 25.0% |
| !! | TTTTAATCGAAACCAACTTA+AGG | + | chr6.1:4790120-4790139 | MS.gene074520:CDS | 25.0% |
| !! | TTTTCAAATGCGAAAAAAAG+TGG | + | chr6.1:4787538-4787557 | MS.gene074520:CDS | 25.0% |
| !!! | AATATCGCCGTTTTTAAAAA+TGG | + | chr6.1:4787011-4787030 | MS.gene074520:intron | 25.0% |
| !!! | ACAATGGCCATTTTTAAAAA+CGG | - | chr6.1:4787021-4787040 | None:intergenic | 25.0% |
| !!! | TGTTTGAGTTTTATGTTTGA+AGG | - | chr6.1:4788451-4788470 | None:intergenic | 25.0% |
| !!! | TTTTATTTAAGCTTGTGCTT+TGG | + | chr6.1:4789494-4789513 | MS.gene074520:intron | 25.0% |
| AAACAAGTTTATTAGCGTGA+TGG | - | chr6.1:4787876-4787895 | None:intergenic | 30.0% | |
| AAATACCGATAAGATGAACA+AGG | + | chr6.1:4788779-4788798 | MS.gene074520:CDS | 30.0% | |
| AACAGAAGCTGAAAGAATTA+AGG | + | chr6.1:4788928-4788947 | MS.gene074520:CDS | 30.0% | |
| AACTAAAAGTAGATGCAGAA+GGG | - | chr6.1:4789150-4789169 | None:intergenic | 30.0% | |
| AAGAACAATTTATAGAGCCA+GGG | - | chr6.1:4789787-4789806 | None:intergenic | 30.0% | |
| AAGAATAATCAAAAGCTAGG+TGG | + | chr6.1:4786441-4786460 | MS.gene074520:CDS | 30.0% | |
| AATGTCAAATGTAAAAGAGG+AGG | + | chr6.1:4788750-4788769 | MS.gene074520:CDS | 30.0% | |
| AATTACCATTGGATTGTGAT+CGG | + | chr6.1:4787297-4787316 | MS.gene074520:intron | 30.0% | |
| AATTCTTGAAGAATCAATGC+AGG | - | chr6.1:4789002-4789021 | None:intergenic | 30.0% | |
| AATTGCTGCCAAAACTATTA+TGG | + | chr6.1:4790181-4790200 | MS.gene074520:CDS | 30.0% | |
| ACTTAAAACATCTTCTCTCA+GGG | - | chr6.1:4788898-4788917 | None:intergenic | 30.0% | |
| AGTGGAAATAAAGACTTTGT+CGG | + | chr6.1:4788570-4788589 | MS.gene074520:CDS | 30.0% | |
| AGTTATCTTCATTGCTGAAT+TGG | + | chr6.1:4789988-4790007 | MS.gene074520:CDS | 30.0% | |
| ATAGAAAGAGAAAATGCACA+TGG | - | chr6.1:4789103-4789122 | None:intergenic | 30.0% | |
| ATCAAAGACATTAAAACGAG+AGG | - | chr6.1:4789734-4789753 | None:intergenic | 30.0% | |
| ATCAATTCGGTAAACAAGTT+TGG | - | chr6.1:4789900-4789919 | None:intergenic | 30.0% | |
| ATTAAGGTCTAGAGAAAATG+AGG | + | chr6.1:4788944-4788963 | MS.gene074520:CDS | 30.0% | |
| ATTATGGTGTGTTTAAGTCA+TGG | + | chr6.1:4790197-4790216 | MS.gene074520:CDS | 30.0% | |
| CATAAAACTCAAACACAAGA+AGG | + | chr6.1:4788456-4788475 | MS.gene074520:CDS | 30.0% | |
| GATGCAAATTTGATCTAGAA+AGG | + | chr6.1:4788649-4788668 | MS.gene074520:CDS | 30.0% | |
| GATTGATTGTGTATATCTTG+TGG | - | chr6.1:4788087-4788106 | None:intergenic | 30.0% | |
| TAACTAAAAGTAGATGCAGA+AGG | - | chr6.1:4789151-4789170 | None:intergenic | 30.0% | |
| TAAGAACAATTTATAGAGCC+AGG | - | chr6.1:4789788-4789807 | None:intergenic | 30.0% | |
| TAAGAGTGAGATTAAGAAGT+GGG | + | chr6.1:4790276-4790295 | MS.gene074520:CDS | 30.0% | |
| TACTACCTTGTTCATCTTAT+CGG | - | chr6.1:4788787-4788806 | None:intergenic | 30.0% | |
| TCATTTAACACAGGAAAGAT+AGG | + | chr6.1:4789860-4789879 | MS.gene074520:CDS | 30.0% | |
| TGATCTTCAATTTGATTCCA+GGG | + | chr6.1:4789750-4789769 | MS.gene074520:intron | 30.0% | |
| TTAAGAGTGAGATTAAGAAG+TGG | + | chr6.1:4790275-4790294 | MS.gene074520:CDS | 30.0% | |
| TTGATCTTCAATTTGATTCC+AGG | + | chr6.1:4789749-4789768 | MS.gene074520:intron | 30.0% | |
| TTGGATTGTAGATTGCTAAT+GGG | + | chr6.1:4787503-4787522 | MS.gene074520:intron | 30.0% | |
| TTTGGATTGTAGATTGCTAA+TGG | + | chr6.1:4787502-4787521 | MS.gene074520:intron | 30.0% | |
| ! | AACTACATCATTTTCATGAG+AGG | - | chr6.1:4788262-4788281 | None:intergenic | 30.0% |
| ! | ACTACATCATTTTCATGAGA+GGG | - | chr6.1:4788261-4788280 | None:intergenic | 30.0% |
| ! | ATTGATATCTGTTCTGAATG+CGG | + | chr6.1:4789019-4789038 | MS.gene074520:CDS | 30.0% |
| ! | GAACATATGATAGTTTGTGT+TGG | + | chr6.1:4787181-4787200 | MS.gene074520:intron | 30.0% |
| ! | GATTTATCTCTCTTTGAAGA+TGG | - | chr6.1:4787646-4787665 | None:intergenic | 30.0% |
| ! | TAGTTCACCTCTAAAGAAAA+AGG | + | chr6.1:4788818-4788837 | MS.gene074520:CDS | 30.0% |
| ! | TGAAGATGTGCTTCAAATTT+TGG | + | chr6.1:4790411-4790430 | MS.gene074520:CDS | 30.0% |
| ! | TGATTTTCTCAGATTATCAG+TGG | - | chr6.1:4786659-4786678 | None:intergenic | 30.0% |
| ! | TTTCTTTAGAGGTGAACTAA+AGG | - | chr6.1:4788817-4788836 | None:intergenic | 30.0% |
| ! | TTTTCTCTCAGCTATTTGAT+TGG | + | chr6.1:4786478-4786497 | MS.gene074520:CDS | 30.0% |
| !! | TCATTTTCTGATAGTGATGA+TGG | + | chr6.1:4787676-4787695 | MS.gene074520:CDS | 30.0% |
| !! | TCTTTAGCATTGATACATCT+TGG | - | chr6.1:4786933-4786952 | None:intergenic | 30.0% |
| AAGATCATAGCTCATGTTGA+TGG | + | chr6.1:4788300-4788319 | MS.gene074520:CDS | 35.0% | |
| AATAATCAAAAGCTAGGTGG+TGG | + | chr6.1:4786444-4786463 | MS.gene074520:CDS | 35.0% | |
| ACAAATTCCACGTATTCACA+CGG | + | chr6.1:4787264-4787283 | MS.gene074520:intron | 35.0% | |
| ATGTTCTTACCAAATGGAGT+TGG | - | chr6.1:4787167-4787186 | None:intergenic | 35.0% | |
| ATTTAAGCTTGTGCTTTGGT+TGG | + | chr6.1:4789498-4789517 | MS.gene074520:intron | 35.0% | |
| CAAACAGAAATCCCTTAAGT+TGG | - | chr6.1:4790135-4790154 | None:intergenic | 35.0% | |
| CACAAGAAGAATCAGAACAA+TGG | - | chr6.1:4787037-4787056 | None:intergenic | 35.0% | |
| CACTTAAAACATCTTCTCTC+AGG | - | chr6.1:4788899-4788918 | None:intergenic | 35.0% | |
| CATTGTTCTGATTCTTCTTG+TGG | + | chr6.1:4787035-4787054 | MS.gene074520:intron | 35.0% | |
| CGATTGAGAGAGTTGTAAAA+TGG | + | chr6.1:4786983-4787002 | MS.gene074520:intron | 35.0% | |
| CTGGTATAGACAAGTCATTA+GGG | + | chr6.1:4788118-4788137 | MS.gene074520:CDS | 35.0% | |
| CTTAAAACATCTTCTCTCAG+GGG | - | chr6.1:4788897-4788916 | None:intergenic | 35.0% | |
| GACATTTGCCATTGAACATT+TGG | - | chr6.1:4789067-4789086 | None:intergenic | 35.0% | |
| GATTAAGAAGTGGGAATGTA+TGG | + | chr6.1:4790285-4790304 | MS.gene074520:CDS | 35.0% | |
| GGAAGATGCAAGAAAACATT+TGG | - | chr6.1:4788010-4788029 | None:intergenic | 35.0% | |
| GTCACCTCAATATCTAATGA+GGG | - | chr6.1:4786823-4786842 | None:intergenic | 35.0% | |
| GTCAGTATTAATGACGTGAT+TGG | + | chr6.1:4789386-4789405 | MS.gene074520:intron | 35.0% | |
| TCATCTCCCAATCAATTACT+TGG | - | chr6.1:4790327-4790346 | None:intergenic | 35.0% | |
| TCCAATGACCAAATGTTCAA+TGG | + | chr6.1:4789056-4789075 | MS.gene074520:CDS | 35.0% | |
| TCTGGTATAGACAAGTCATT+AGG | + | chr6.1:4788117-4788136 | MS.gene074520:CDS | 35.0% | |
| TGCAAGCACATATATTCTTC+TGG | - | chr6.1:4788367-4788386 | None:intergenic | 35.0% | |
| TGGTATAGACAAGTCATTAG+GGG | + | chr6.1:4788119-4788138 | MS.gene074520:CDS | 35.0% | |
| TGGTCCTACAAATCATATGT+TGG | + | chr6.1:4789248-4789267 | MS.gene074520:intron | 35.0% | |
| TGTATTAGATGAGACTAACC+AGG | - | chr6.1:4786555-4786574 | None:intergenic | 35.0% | |
| TGTCACCTCAATATCTAATG+AGG | - | chr6.1:4786824-4786843 | None:intergenic | 35.0% | |
| TGTTCTTACCAAATGGAGTT+GGG | - | chr6.1:4787166-4787185 | None:intergenic | 35.0% | |
| TTCATAGTATCACACACTTG+AGG | + | chr6.1:4786779-4786798 | MS.gene074520:intron | 35.0% | |
| TTTGGAAACTGATGAGTGTT+TGG | + | chr6.1:4787060-4787079 | MS.gene074520:intron | 35.0% | |
| TTTGGTCATTGGAACATGTT+TGG | - | chr6.1:4789049-4789068 | None:intergenic | 35.0% | |
| ! | ATCAATGCAGGTGATCTTTT+AGG | - | chr6.1:4788990-4789009 | None:intergenic | 35.0% |
| ! | ATTGGTAGGACACTTTGAAA+TGG | - | chr6.1:4788031-4788050 | None:intergenic | 35.0% |
| ! | CACATATATTCTTCTGGAAG+TGG | - | chr6.1:4788361-4788380 | None:intergenic | 35.0% |
| ! | CTGATTCTTCTTGTGGATTT+TGG | + | chr6.1:4787042-4787061 | MS.gene074520:intron | 35.0% |
| ! | GATCTTGTAGATTTTAGGCA+TGG | + | chr6.1:4790451-4790470 | MS.gene074520:CDS | 35.0% |
| ! | GGTCTGAATCAAGTTTTCTT+TGG | + | chr6.1:4787202-4787221 | MS.gene074520:intron | 35.0% |
| ! | GTCTCTTCCTTTTTCTTTAG+AGG | - | chr6.1:4788828-4788847 | None:intergenic | 35.0% |
| ! | TCAAAGTGTCCTACCAATAA+CGG | + | chr6.1:4788033-4788052 | MS.gene074520:CDS | 35.0% |
| ! | TCAATGTATTGATGGCATGT+CGG | - | chr6.1:4789318-4789337 | None:intergenic | 35.0% |
| ! | TTCATTGCTGAATTGGTTCT+TGG | + | chr6.1:4789995-4790014 | MS.gene074520:CDS | 35.0% |
| AAAAAACTTCTTCCTCCTCC+TGG | + | chr6.1:4786534-4786553 | MS.gene074520:CDS | 40.0% | |
| AAAATTCCTCTGCGTAGCAT+CGG | - | chr6.1:4790104-4790123 | None:intergenic | 40.0% | |
| AAAGGCTCCTTTATGCATGA+AGG | + | chr6.1:4790231-4790250 | MS.gene074520:CDS | 40.0% | |
| AAATGTCACTAGGAGCAATG+AGG | + | chr6.1:4790018-4790037 | MS.gene074520:CDS | 40.0% | |
| AAGAAGTGGGAATGTATGGT+TGG | + | chr6.1:4790289-4790308 | MS.gene074520:CDS | 40.0% | |
| AAGAGTCCGAGAATTTCTTC+GGG | + | chr6.1:4787904-4787923 | MS.gene074520:CDS | 40.0% | |
| AAGATTGACAGAAAGCAAGC+TGG | + | chr6.1:4789952-4789971 | MS.gene074520:CDS | 40.0% | |
| AATGGTAATCATCTCAGTCC+TGG | + | chr6.1:4789611-4789630 | MS.gene074520:CDS | 40.0% | |
| AATGTCACTAGGAGCAATGA+GGG | + | chr6.1:4790019-4790038 | MS.gene074520:CDS | 40.0% | |
| ACCAAATGGAGTTGGGAATT+AGG | - | chr6.1:4787159-4787178 | None:intergenic | 40.0% | |
| AGAAGAGCAGTAACTAGGTT+TGG | + | chr6.1:4787781-4787800 | MS.gene074520:CDS | 40.0% | |
| AGAGGTGAACTAAAGGTAGA+TGG | - | chr6.1:4788810-4788829 | None:intergenic | 40.0% | |
| AGCTTTCTTATAGATTGCGG+CGG | + | chr6.1:4787239-4787258 | MS.gene074520:intron | 40.0% | |
| ATCAACCTAGCTACAAGACT+CGG | - | chr6.1:4787607-4787626 | None:intergenic | 40.0% | |
| ATCGAGACTACTGGAAGAAA+AGG | - | chr6.1:4789654-4789673 | None:intergenic | 40.0% | |
| ATCTCAGCCTTCATGCATAA+AGG | - | chr6.1:4790241-4790260 | None:intergenic | 40.0% | |
| ATGAAACACGGATACGGATA+TGG | + | chr6.1:4786618-4786637 | MS.gene074520:intron | 40.0% | |
| ATGCAAGAAATGAGAAGCTG+TGG | - | chr6.1:4790055-4790074 | None:intergenic | 40.0% | |
| ATTAGATGAGACTAACCAGG+AGG | - | chr6.1:4786552-4786571 | None:intergenic | 40.0% | |
| ATTGCTAATGGGAACAGTCA+AGG | + | chr6.1:4787514-4787533 | MS.gene074520:CDS | 40.0% | |
| CACTGATATGCGTAGAAACA+AGG | - | chr6.1:4789554-4789573 | None:intergenic | 40.0% | |
| CAGTGTGAGACAAATCATGT+TGG | + | chr6.1:4789569-4789588 | MS.gene074520:intron | 40.0% | |
| CCAGACATGCTTTCAATCTA+AGG | - | chr6.1:4789292-4789311 | None:intergenic | 40.0% | |
| CTCTTTCCCGAAGAAATTCT+CGG | - | chr6.1:4787913-4787932 | None:intergenic | 40.0% | |
| CTGATGCACAAGGAGAAAAA+AGG | + | chr6.1:4788694-4788713 | MS.gene074520:CDS | 40.0% | |
| GAAATTCTCGGACTCTTCAA+AGG | - | chr6.1:4787901-4787920 | None:intergenic | 40.0% | |
| GAAGAGTCCGAGAATTTCTT+CGG | + | chr6.1:4787903-4787922 | MS.gene074520:CDS | 40.0% | |
| GACTGTTTGAACTTGACCTA+TGG | + | chr6.1:4787382-4787401 | MS.gene074520:intron | 40.0% | |
| GAGATGATTACCATTGCAAG+AGG | - | chr6.1:4789606-4789625 | None:intergenic | 40.0% | |
| GAGCATACATGCAAAAACTG+CGG | + | chr6.1:4788141-4788160 | MS.gene074520:CDS | 40.0% | |
| GATGCCCTCATTAGATATTG+AGG | + | chr6.1:4786816-4786835 | MS.gene074520:intron | 40.0% | |
| GCCATTGAACATTTGGTCAT+TGG | - | chr6.1:4789060-4789079 | None:intergenic | 40.0% | |
| GGTTTGAATCAAAGCCTAAG+TGG | + | chr6.1:4788591-4788610 | MS.gene074520:CDS | 40.0% | |
| GTCAGCACTTCAATTACCAT+TGG | + | chr6.1:4787286-4787305 | MS.gene074520:intron | 40.0% | |
| GTCTAGAGAAAATGAGGAGT+TGG | + | chr6.1:4788950-4788969 | MS.gene074520:CDS | 40.0% | |
| TAACGGCATTGTGACAGAAA+TGG | + | chr6.1:4788050-4788069 | MS.gene074520:CDS | 40.0% | |
| TAGTATCACACACTTGAGGT+TGG | + | chr6.1:4786783-4786802 | MS.gene074520:intron | 40.0% | |
| TATCCGTATCCGTGTTTCAT+AGG | - | chr6.1:4786618-4786637 | None:intergenic | 40.0% | |
| TCACCTATGAAACACGGATA+CGG | + | chr6.1:4786612-4786631 | MS.gene074520:intron | 40.0% | |
| TCCTGTGTTAAATGATGCTG+CGG | - | chr6.1:4789855-4789874 | None:intergenic | 40.0% | |
| TGAGTCACTCATTGGGAAAA+TGG | + | chr6.1:4790344-4790363 | MS.gene074520:CDS | 40.0% | |
| TGGTTCTTGGAAATGTCACT+AGG | + | chr6.1:4790008-4790027 | MS.gene074520:CDS | 40.0% | |
| TGTTTAAGTCATGGTGTGCA+TGG | + | chr6.1:4790206-4790225 | MS.gene074520:CDS | 40.0% | |
| TTATTCGGAACCTCTTGCAA+TGG | + | chr6.1:4789593-4789612 | MS.gene074520:CDS | 40.0% | |
| TTCTGTCACAATGCCGTTAT+TGG | - | chr6.1:4788049-4788068 | None:intergenic | 40.0% | |
| ! | AGTGATGATGCTAGTGTGAA+TGG | + | chr6.1:4786390-4786409 | MS.gene074520:CDS | 40.0% |
| ! | ATGCATGAAGGCTGAGATTT+TGG | + | chr6.1:4790243-4790262 | MS.gene074520:CDS | 40.0% |
| ! | CCTTAGATTGAAAGCATGTC+TGG | + | chr6.1:4789289-4789308 | MS.gene074520:intron | 40.0% |
| ! | GAAAATGAGGAGTTGGTTAC+TGG | + | chr6.1:4788957-4788976 | MS.gene074520:CDS | 40.0% |
| ! | GTGTTTTGTCACAAGTGAGA+AGG | + | chr6.1:4787827-4787846 | MS.gene074520:CDS | 40.0% |
| !! | AAGCTCAAGGTTGATAGAAG+CGG | + | chr6.1:4787942-4787961 | MS.gene074520:CDS | 40.0% |
| !! | ACTTGAGGTTGGTAGTGTAA+AGG | + | chr6.1:4786794-4786813 | MS.gene074520:intron | 40.0% |
| !! | AGTCTTGTAGCTAGGTTGAT+GGG | + | chr6.1:4787607-4787626 | MS.gene074520:CDS | 40.0% |
| !! | TTCTGATAGTGATGATGGTG+AGG | + | chr6.1:4787681-4787700 | MS.gene074520:CDS | 40.0% |
| !!! | AGGAGGAGGAAGAAGTTTTT+TGG | - | chr6.1:4786535-4786554 | None:intergenic | 40.0% |
| AAAGCCTAAGTGGTCGAACT+CGG | + | chr6.1:4788601-4788620 | MS.gene074520:CDS | 45.0% | |
| AATGGCAAATGTCCCAAGGT+TGG | + | chr6.1:4789074-4789093 | MS.gene074520:intron | 45.0% | |
| ACGAGAGAAGAGCAGTAACT+AGG | + | chr6.1:4787776-4787795 | MS.gene074520:CDS | 45.0% | |
| ACTGTCCGATCACAATCCAA+TGG | - | chr6.1:4787305-4787324 | None:intergenic | 45.0% | |
| AGAAGCGGCTACTAAGATCT+TGG | + | chr6.1:4787957-4787976 | MS.gene074520:CDS | 45.0% | |
| AGAGTACATCTCGAAGCTCA+AGG | + | chr6.1:4787929-4787948 | MS.gene074520:CDS | 45.0% | |
| AGGAAACCTTCAAGCAGACA+AGG | + | chr6.1:4788669-4788688 | MS.gene074520:CDS | 45.0% | |
| ATGCACATGGAAACCAACCT+TGG | - | chr6.1:4789090-4789109 | None:intergenic | 45.0% | |
| CATGAGCTATGATCTTCTCC+TGG | - | chr6.1:4788296-4788315 | None:intergenic | 45.0% | |
| CATGGAGGCTTAAAGGATGA+TGG | + | chr6.1:4788411-4788430 | MS.gene074520:CDS | 45.0% | |
| CATGTTTCAACCGTTCAGGT+TGG | - | chr6.1:4789814-4789833 | None:intergenic | 45.0% | |
| CCTCAGATTTGACGTGTTCT+GGG | - | chr6.1:4786748-4786767 | None:intergenic | 45.0% | |
| CCTGAACGGTTGAAACATGA+AGG | + | chr6.1:4789815-4789834 | MS.gene074520:CDS | 45.0% | |
| CCTTCATGTTTCAACCGTTC+AGG | - | chr6.1:4789818-4789837 | None:intergenic | 45.0% | |
| CTCAGATTTGACGTGTTCTG+GGG | - | chr6.1:4786747-4786766 | None:intergenic | 45.0% | |
| GATTCATCAAGCAAACCGCA+TGG | + | chr6.1:4788393-4788412 | MS.gene074520:CDS | 45.0% | |
| GCCTAATTCCCAACTCCATT+TGG | + | chr6.1:4787155-4787174 | MS.gene074520:CDS | 45.0% | |
| GCTACTAAGATCTTGGAACC+TGG | + | chr6.1:4787964-4787983 | MS.gene074520:CDS | 45.0% | |
| GTCACAATGCCGTTATTGGT+AGG | - | chr6.1:4788045-4788064 | None:intergenic | 45.0% | |
| GTTCAATGGCAAATGTCCCA+AGG | + | chr6.1:4789070-4789089 | MS.gene074520:CDS | 45.0% | |
| GTTCTTACGACCAACCTGAA+CGG | + | chr6.1:4789801-4789820 | MS.gene074520:CDS | 45.0% | |
| TCAGAACCTTGTCTGCTTGA+AGG | - | chr6.1:4788678-4788697 | None:intergenic | 45.0% | |
| TCATCCTTTAAGCCTCCATG+CGG | - | chr6.1:4788411-4788430 | None:intergenic | 45.0% | |
| TCCGCAGCATCATTTAACAC+AGG | + | chr6.1:4789851-4789870 | MS.gene074520:CDS | 45.0% | |
| TCCTCAGATTTGACGTGTTC+TGG | - | chr6.1:4786749-4786768 | None:intergenic | 45.0% | |
| TCGGATAAGATCTCCTACGA+AGG | + | chr6.1:4788620-4788639 | MS.gene074520:CDS | 45.0% | |
| TCTTCCAGTAGTCTCGATGA+AGG | + | chr6.1:4789656-4789675 | MS.gene074520:CDS | 45.0% | |
| TGACAGAAATGGCTGGAACT+CGG | + | chr6.1:4788061-4788080 | MS.gene074520:CDS | 45.0% | |
| TGCACATGGAAACCAACCTT+GGG | - | chr6.1:4789089-4789108 | None:intergenic | 45.0% | |
| TGGGAGATGAGTCACTCATT+GGG | + | chr6.1:4790337-4790356 | MS.gene074520:CDS | 45.0% | |
| TGTAGTTCTTCTCAGAAGCC+AGG | + | chr6.1:4788275-4788294 | MS.gene074520:CDS | 45.0% | |
| TTATCCGAGTTCGACCACTT+AGG | - | chr6.1:4788608-4788627 | None:intergenic | 45.0% | |
| TTGCATCTATCTGCCTTCGT+AGG | - | chr6.1:4788636-4788655 | None:intergenic | 45.0% | |
| TTGGGAGATGAGTCACTCAT+TGG | + | chr6.1:4790336-4790355 | MS.gene074520:CDS | 45.0% | |
| ! | AAGCTAGGTGGTGGTTGTAT+TGG | + | chr6.1:4786453-4786472 | MS.gene074520:CDS | 45.0% |
| ! | AGACAAGGTTCTGATGCACA+AGG | + | chr6.1:4788684-4788703 | MS.gene074520:CDS | 45.0% |
| ! | GAGTCTTGTAGCTAGGTTGA+TGG | + | chr6.1:4787606-4787625 | MS.gene074520:CDS | 45.0% |
| !! | CAGCATCGGCGAAAAACAAA+AGG | + | chr6.1:4788226-4788245 | MS.gene074520:CDS | 45.0% |
| !! | TAAGCTATGAAGCACCGACA+CGG | - | chr6.1:4789415-4789434 | None:intergenic | 45.0% |
| !! | TGATGATGGTGAGGAGTCTT+TGG | + | chr6.1:4787690-4787709 | MS.gene074520:CDS | 45.0% |
| !! | TTTGAGGCGGGTGTTGATAT+TGG | + | chr6.1:4790388-4790407 | MS.gene074520:CDS | 45.0% |
| !!! | GGCTGAGATTTTGGTTCAAG+AGG | + | chr6.1:4790252-4790271 | MS.gene074520:CDS | 45.0% |
| AGATGAGACTAACCAGGAGG+AGG | - | chr6.1:4786549-4786568 | None:intergenic | 50.0% | |
| AGGTCAAAGCTGCGAATGCA+AGG | + | chr6.1:4787713-4787732 | MS.gene074520:CDS | 50.0% | |
| AGTAGTCTCGATGAAGGCTC+AGG | + | chr6.1:4789662-4789681 | MS.gene074520:CDS | 50.0% | |
| AGTCAAGGCCTCAGAAGCTT+CGG | + | chr6.1:4787740-4787759 | MS.gene074520:CDS | 50.0% | |
| CAAACCGCATGGAGGCTTAA+AGG | + | chr6.1:4788404-4788423 | MS.gene074520:CDS | 50.0% | |
| CCCAGAACACGTCAAATCTG+AGG | + | chr6.1:4786745-4786764 | MS.gene074520:intron | 50.0% | |
| CGAATGCAAGGCATGAGTCA+AGG | + | chr6.1:4787725-4787744 | MS.gene074520:CDS | 50.0% | |
| CTGTTTGTAGCCTGCAAACC+AGG | - | chr6.1:4787985-4788004 | None:intergenic | 50.0% | |
| GAAGCTTCCAAGACTGATCC+AGG | - | chr6.1:4789632-4789651 | None:intergenic | 50.0% | |
| GCCTCAGAAGCTTCGGAAAA+CGG | + | chr6.1:4787747-4787766 | MS.gene074520:CDS | 50.0% | |
| GGCATTGTGACAGAAATGGC+TGG | + | chr6.1:4788054-4788073 | MS.gene074520:CDS | 50.0% | |
| GTCAGCACATCAGAAGCCAT+AGG | - | chr6.1:4787401-4787420 | None:intergenic | 50.0% | |
| GTCATGGTGTGCATGGACAA+AGG | + | chr6.1:4790213-4790232 | MS.gene074520:CDS | 50.0% | |
| GTGGGAATGTATGGTTGGCA+TGG | + | chr6.1:4790294-4790313 | MS.gene074520:CDS | 50.0% | |
| TCAGAAGCTTCGGAAAACGG+AGG | + | chr6.1:4787750-4787769 | MS.gene074520:CDS | 50.0% | |
| TCAGGGGTCGATGATGTCTT+TGG | - | chr6.1:4788881-4788900 | None:intergenic | 50.0% | |
| TCATCAAGCAAACCGCATGG+AGG | + | chr6.1:4788396-4788415 | MS.gene074520:CDS | 50.0% | |
| TCTCAGTCCTGGATCAGTCT+TGG | + | chr6.1:4789622-4789641 | MS.gene074520:CDS | 50.0% | |
| TGAGCCTTCATCGAGACTAC+TGG | - | chr6.1:4789663-4789682 | None:intergenic | 50.0% | |
| ! | GATCTTGGAACCTGGTTTGC+AGG | + | chr6.1:4787972-4787991 | MS.gene074520:CDS | 50.0% |
| ! | GCAACTTCAAGCACTGTGAG+TGG | + | chr6.1:4788552-4788571 | MS.gene074520:CDS | 50.0% |
| ! | TCCGTTTTCCGAAGCTTCTG+AGG | - | chr6.1:4787751-4787770 | None:intergenic | 50.0% |
| ! | TGATGGTGAGGAGTCTTTGG+AGG | + | chr6.1:4787693-4787712 | MS.gene074520:CDS | 50.0% |
| !! | AAGCACCGAGTCTTGTAGCT+AGG | + | chr6.1:4787599-4787618 | MS.gene074520:CDS | 50.0% |
| !! | CACCGACTTCTCTTCAGCAT+CGG | + | chr6.1:4788212-4788231 | MS.gene074520:CDS | 50.0% |
| CCAGGGTGAAAACAAAGCCC+TGG | - | chr6.1:4789770-4789789 | None:intergenic | 55.0% | |
| CGCCGATGCTGAAGAGAAGT+CGG | - | chr6.1:4788217-4788236 | None:intergenic | 55.0% | |
| GTCACTAGGAGCAATGAGGG+AGG | + | chr6.1:4790022-4790041 | MS.gene074520:CDS | 55.0% | |
| TTGCAACCGATGCTACGCAG+AGG | + | chr6.1:4790095-4790114 | MS.gene074520:CDS | 55.0% | |
| ! | GACGTGATTGGTGTCCGTGT+CGG | + | chr6.1:4789398-4789417 | MS.gene074520:intron | 55.0% |
| ! | GTGCTGACCGTGTGAATACG+TGG | - | chr6.1:4787274-4787293 | None:intergenic | 55.0% |
| !! | GTGTTGGTGTCGTGTCGTGT+CGG | + | chr6.1:4786700-4786719 | MS.gene074520:intron | 55.0% |
| !!! | CCAGGGCTTTGTTTTCACCC+TGG | + | chr6.1:4789767-4789786 | MS.gene074520:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 4786387 | 4790483 | 4786387 | ID=MS.gene074520 |
| chr6.1 | mRNA | 4786387 | 4790483 | 4786387 | ID=MS.gene074520.t1;Parent=MS.gene074520 |
| chr6.1 | exon | 4786387 | 4786555 | 4786387 | ID=MS.gene074520.t1.exon1;Parent=MS.gene074520.t1 |
| chr6.1 | CDS | 4786387 | 4786555 | 4786387 | ID=cds.MS.gene074520.t1;Parent=MS.gene074520.t1 |
| chr6.1 | exon | 4787106 | 4787176 | 4787106 | ID=MS.gene074520.t1.exon2;Parent=MS.gene074520.t1 |
| chr6.1 | CDS | 4787106 | 4787176 | 4787106 | ID=cds.MS.gene074520.t1;Parent=MS.gene074520.t1 |
| chr6.1 | exon | 4787514 | 4789091 | 4787514 | ID=MS.gene074520.t1.exon3;Parent=MS.gene074520.t1 |
| chr6.1 | CDS | 4787514 | 4789091 | 4787514 | ID=cds.MS.gene074520.t1;Parent=MS.gene074520.t1 |
| chr6.1 | exon | 4789572 | 4789683 | 4789572 | ID=MS.gene074520.t1.exon4;Parent=MS.gene074520.t1 |
| chr6.1 | CDS | 4789572 | 4789683 | 4789572 | ID=cds.MS.gene074520.t1;Parent=MS.gene074520.t1 |
| chr6.1 | exon | 4789771 | 4790483 | 4789771 | ID=MS.gene074520.t1.exon5;Parent=MS.gene074520.t1 |
| chr6.1 | CDS | 4789771 | 4790483 | 4789771 | ID=cds.MS.gene074520.t1;Parent=MS.gene074520.t1 |
| Gene Sequence |
| Protein sequence |
