Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08781.t1 | XP_024628489.1 | 99.5 | 416 | 2 | 0 | 28 | 443 | 22 | 437 | 1.20E-240 | 842 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08781.t1 | Q93W93 | 64.4 | 416 | 144 | 2 | 28 | 443 | 23 | 434 | 4.3e-157 | 555.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08781.t1 | G7LHY4 | 99.5 | 416 | 2 | 0 | 28 | 443 | 22 | 437 | 8.9e-241 | 842.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene08781 | MS.gene052072 | PPI |
MS.gene08781 | MS.gene013003 | PPI |
MS.gene08781 | MS.gene48483 | PPI |
MS.gene08781 | MS.gene054624 | PPI |
MS.gene08781 | MS.gene049230 | PPI |
MS.gene08781 | MS.gene035805 | PPI |
MS.gene08781 | MS.gene044004 | PPI |
MS.gene08781 | MS.gene40946 | PPI |
MS.gene08781 | MS.gene013259 | PPI |
MS.gene08781 | MS.gene06344 | PPI |
MS.gene08781 | MS.gene044005 | PPI |
MS.gene08781 | MS.gene67151 | PPI |
MS.gene08781 | MS.gene064542 | PPI |
MS.gene08781 | MS.gene78401 | PPI |
MS.gene08781 | MS.gene67091 | PPI |
MS.gene24365 | MS.gene08781 | PPI |
MS.gene08781 | MS.gene062762 | PPI |
MS.gene08781 | MS.gene45537 | PPI |
MS.gene08781 | MS.gene31111 | PPI |
MS.gene08781 | MS.gene73119 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08781.t1 | MTR_8g085600 | 99.519 | 416 | 2 | 0 | 28 | 443 | 22 | 437 | 0.0 | 860 |
MS.gene08781.t1 | MTR_4g114110 | 74.048 | 420 | 106 | 2 | 27 | 443 | 23 | 442 | 0.0 | 662 |
MS.gene08781.t1 | MTR_3g073640 | 28.226 | 372 | 196 | 10 | 81 | 383 | 41 | 410 | 6.57e-36 | 138 |
MS.gene08781.t1 | MTR_2g019230 | 28.834 | 326 | 214 | 9 | 83 | 397 | 52 | 370 | 8.16e-36 | 137 |
MS.gene08781.t1 | MTR_2g008440 | 27.982 | 436 | 235 | 15 | 83 | 442 | 43 | 475 | 4.21e-34 | 133 |
MS.gene08781.t1 | MTR_8g030940 | 28.797 | 316 | 211 | 8 | 82 | 391 | 24 | 331 | 6.67e-31 | 122 |
MS.gene08781.t1 | MTR_8g080370 | 30.072 | 276 | 179 | 7 | 83 | 350 | 51 | 320 | 1.77e-30 | 121 |
MS.gene08781.t1 | MTR_3g085570 | 28.159 | 277 | 183 | 8 | 82 | 349 | 34 | 303 | 4.27e-28 | 114 |
MS.gene08781.t1 | MTR_2g094093 | 30.584 | 291 | 182 | 11 | 71 | 352 | 8 | 287 | 7.96e-27 | 111 |
MS.gene08781.t1 | MTR_7g029290 | 27.076 | 277 | 182 | 9 | 87 | 352 | 59 | 326 | 7.55e-23 | 100 |
MS.gene08781.t1 | MTR_8g085650 | 29.515 | 227 | 139 | 7 | 83 | 291 | 7 | 230 | 3.50e-22 | 97.4 |
MS.gene08781.t1 | MTR_3g083730 | 67.742 | 62 | 20 | 0 | 62 | 123 | 6 | 67 | 5.57e-22 | 89.4 |
MS.gene08781.t1 | MTR_3g094850 | 26.974 | 304 | 198 | 9 | 83 | 380 | 9 | 294 | 7.77e-22 | 96.7 |
MS.gene08781.t1 | MTR_7g095220 | 30.769 | 195 | 121 | 5 | 83 | 267 | 4 | 194 | 2.76e-21 | 95.1 |
MS.gene08781.t1 | MTR_3g083720 | 70.690 | 58 | 16 | 1 | 112 | 169 | 50 | 106 | 2.19e-20 | 88.2 |
MS.gene08781.t1 | MTR_3g108860 | 25.597 | 293 | 194 | 9 | 71 | 357 | 5 | 279 | 5.86e-20 | 91.3 |
MS.gene08781.t1 | MTR_6g023805 | 24.274 | 379 | 238 | 14 | 84 | 443 | 57 | 405 | 1.59e-18 | 87.4 |
MS.gene08781.t1 | MTR_3g083740 | 45.217 | 115 | 32 | 5 | 238 | 350 | 3 | 88 | 1.85e-16 | 75.9 |
MS.gene08781.t1 | MTR_3g083700 | 60.870 | 69 | 23 | 2 | 343 | 410 | 53 | 118 | 2.59e-16 | 75.5 |
MS.gene08781.t1 | MTR_0105s0130 | 25.993 | 277 | 176 | 10 | 90 | 349 | 96 | 360 | 6.64e-16 | 79.7 |
MS.gene08781.t1 | MTR_0345s0010 | 25.993 | 277 | 176 | 10 | 90 | 349 | 96 | 360 | 7.33e-16 | 79.7 |
MS.gene08781.t1 | MTR_1330s0010 | 25.993 | 277 | 176 | 10 | 90 | 349 | 109 | 373 | 1.05e-15 | 79.3 |
MS.gene08781.t1 | MTR_5g039390 | 26.408 | 284 | 181 | 9 | 83 | 349 | 129 | 401 | 2.26e-15 | 78.6 |
MS.gene08781.t1 | MTR_0105s0040 | 25.632 | 277 | 177 | 10 | 90 | 349 | 194 | 458 | 3.23e-15 | 78.2 |
MS.gene08781.t1 | MTR_0105s0170 | 25.632 | 277 | 177 | 10 | 90 | 349 | 109 | 373 | 4.83e-15 | 77.4 |
MS.gene08781.t1 | MTR_0105s0020 | 25.271 | 277 | 178 | 10 | 90 | 349 | 96 | 360 | 5.91e-15 | 77.0 |
MS.gene08781.t1 | MTR_0496s0010 | 27.273 | 231 | 153 | 7 | 90 | 315 | 78 | 298 | 6.59e-15 | 76.6 |
MS.gene08781.t1 | MTR_4g022260 | 27.753 | 227 | 149 | 7 | 90 | 311 | 78 | 294 | 9.87e-15 | 76.3 |
MS.gene08781.t1 | MTR_8g468030 | 25.532 | 282 | 182 | 9 | 85 | 349 | 152 | 422 | 1.30e-14 | 76.3 |
MS.gene08781.t1 | MTR_2g102370 | 26.056 | 284 | 175 | 11 | 83 | 340 | 3 | 277 | 1.86e-13 | 72.0 |
MS.gene08781.t1 | MTR_5g026580 | 26.629 | 353 | 209 | 17 | 83 | 409 | 41 | 369 | 3.33e-13 | 71.2 |
MS.gene08781.t1 | MTR_4g108280 | 23.320 | 253 | 181 | 7 | 63 | 311 | 11 | 254 | 6.75e-13 | 70.1 |
MS.gene08781.t1 | MTR_4g022400 | 24.194 | 248 | 175 | 7 | 68 | 311 | 53 | 291 | 9.57e-13 | 70.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08781.t1 | AT1G55270 | 77.644 | 416 | 89 | 2 | 28 | 443 | 23 | 434 | 0.0 | 690 |
MS.gene08781.t1 | AT1G55270 | 74.679 | 312 | 75 | 2 | 132 | 443 | 1 | 308 | 1.59e-177 | 498 |
MS.gene08781.t1 | AT1G22040 | 28.082 | 438 | 231 | 12 | 83 | 442 | 43 | 474 | 3.51e-35 | 136 |
MS.gene08781.t1 | AT1G67480 | 29.595 | 321 | 206 | 10 | 72 | 383 | 28 | 337 | 8.41e-34 | 130 |
MS.gene08781.t1 | AT1G67480 | 29.595 | 321 | 206 | 10 | 72 | 383 | 28 | 337 | 8.41e-34 | 130 |
MS.gene08781.t1 | AT1G67480 | 29.595 | 321 | 206 | 10 | 72 | 383 | 28 | 337 | 8.41e-34 | 130 |
MS.gene08781.t1 | AT1G30090 | 29.352 | 293 | 192 | 7 | 69 | 350 | 39 | 327 | 2.93e-32 | 127 |
MS.gene08781.t1 | AT3G61350 | 25.501 | 349 | 229 | 10 | 75 | 407 | 13 | 346 | 1.40e-30 | 121 |
MS.gene08781.t1 | AT3G61350 | 25.501 | 349 | 229 | 10 | 75 | 407 | 13 | 346 | 1.40e-30 | 121 |
MS.gene08781.t1 | AT1G27420 | 28.058 | 278 | 183 | 6 | 82 | 349 | 9 | 279 | 2.84e-26 | 109 |
MS.gene08781.t1 | AT2G24540 | 24.437 | 311 | 208 | 9 | 63 | 358 | 9 | 307 | 1.37e-25 | 107 |
MS.gene08781.t1 | AT3G27150 | 28.479 | 309 | 200 | 10 | 84 | 380 | 71 | 370 | 1.02e-23 | 103 |
MS.gene08781.t1 | AT3G27150 | 28.479 | 309 | 200 | 10 | 84 | 380 | 71 | 370 | 1.02e-23 | 103 |
MS.gene08781.t1 | AT5G60570 | 27.957 | 279 | 177 | 10 | 83 | 350 | 49 | 314 | 6.19e-19 | 88.6 |
MS.gene08781.t1 | AT5G60570 | 27.957 | 279 | 177 | 10 | 83 | 350 | 49 | 314 | 6.19e-19 | 88.6 |
MS.gene08781.t1 | AT5G60570 | 27.957 | 279 | 177 | 10 | 83 | 350 | 49 | 314 | 6.19e-19 | 88.6 |
MS.gene08781.t1 | AT1G16250 | 25.306 | 245 | 169 | 4 | 79 | 311 | 4 | 246 | 8.49e-18 | 85.1 |
MS.gene08781.t1 | AT1G16250 | 25.306 | 245 | 169 | 4 | 79 | 311 | 4 | 246 | 8.49e-18 | 85.1 |
MS.gene08781.t1 | AT1G80440 | 26.962 | 293 | 182 | 12 | 83 | 351 | 3 | 287 | 1.52e-17 | 84.0 |
MS.gene08781.t1 | AT1G26930 | 27.083 | 288 | 181 | 9 | 83 | 351 | 71 | 348 | 3.02e-17 | 84.0 |
MS.gene08781.t1 | AT3G63220 | 28.351 | 194 | 127 | 4 | 83 | 267 | 4 | 194 | 8.74e-17 | 81.6 |
MS.gene08781.t1 | AT3G63220 | 28.351 | 194 | 127 | 4 | 83 | 267 | 11 | 201 | 1.12e-16 | 81.6 |
MS.gene08781.t1 | AT3G63220 | 28.351 | 194 | 127 | 4 | 83 | 267 | 11 | 201 | 1.12e-16 | 81.6 |
MS.gene08781.t1 | AT2G02870 | 25.000 | 308 | 197 | 10 | 59 | 349 | 101 | 391 | 1.80e-16 | 81.6 |
MS.gene08781.t1 | AT2G02870 | 25.000 | 308 | 197 | 10 | 59 | 349 | 101 | 391 | 1.80e-16 | 81.6 |
MS.gene08781.t1 | AT2G02870 | 25.000 | 308 | 197 | 10 | 59 | 349 | 101 | 391 | 1.80e-16 | 81.6 |
MS.gene08781.t1 | AT1G15670 | 25.753 | 299 | 183 | 11 | 83 | 351 | 3 | 292 | 5.74e-16 | 79.3 |
MS.gene08781.t1 | AT3G43710 | 29.949 | 197 | 132 | 4 | 72 | 265 | 14 | 207 | 1.88e-15 | 78.2 |
MS.gene08781.t1 | AT3G46050 | 28.302 | 265 | 167 | 10 | 69 | 320 | 3 | 257 | 2.81e-15 | 77.4 |
MS.gene08781.t1 | AT1G14330 | 25.325 | 308 | 190 | 11 | 59 | 349 | 80 | 364 | 4.50e-15 | 77.4 |
MS.gene08781.t1 | AT1G60570 | 29.187 | 209 | 134 | 5 | 58 | 262 | 1 | 199 | 4.61e-15 | 77.0 |
MS.gene08781.t1 | AT4G39290 | 30.601 | 183 | 120 | 4 | 87 | 264 | 16 | 196 | 8.77e-15 | 75.9 |
MS.gene08781.t1 | AT4G23580 | 26.908 | 249 | 157 | 7 | 87 | 317 | 19 | 260 | 1.67e-14 | 75.1 |
MS.gene08781.t1 | AT4G35120 | 28.502 | 207 | 120 | 7 | 70 | 261 | 10 | 203 | 4.69e-14 | 73.9 |
MS.gene08781.t1 | AT4G33900 | 31.472 | 197 | 110 | 8 | 87 | 264 | 15 | 205 | 7.05e-14 | 73.2 |
MS.gene08781.t1 | AT1G26930 | 25.781 | 256 | 153 | 8 | 83 | 317 | 71 | 310 | 1.44e-13 | 72.4 |
MS.gene08781.t1 | AT5G02980 | 28.788 | 198 | 113 | 7 | 75 | 261 | 3 | 183 | 3.41e-13 | 70.9 |
MS.gene08781.t1 | AT1G74510 | 27.350 | 234 | 147 | 9 | 87 | 311 | 99 | 318 | 4.03e-13 | 71.2 |
MS.gene08781.t1 | AT1G74510 | 27.350 | 234 | 147 | 9 | 87 | 311 | 99 | 318 | 4.03e-13 | 71.2 |
MS.gene08781.t1 | AT1G74510 | 27.350 | 234 | 147 | 9 | 87 | 311 | 99 | 318 | 4.03e-13 | 71.2 |
MS.gene08781.t1 | AT5G03000 | 27.234 | 235 | 158 | 6 | 69 | 294 | 25 | 255 | 7.10e-13 | 70.1 |
MS.gene08781.t1 | AT2G29770 | 24.839 | 310 | 184 | 10 | 69 | 351 | 18 | 305 | 1.06e-12 | 69.7 |
MS.gene08781.t1 | AT2G21950 | 23.853 | 327 | 223 | 10 | 66 | 380 | 3 | 315 | 1.54e-12 | 69.3 |
MS.gene08781.t1 | AT1G31350 | 21.591 | 352 | 227 | 13 | 83 | 400 | 35 | 371 | 1.10e-11 | 66.6 |
MS.gene08781.t1 | AT4G34170 | 29.775 | 178 | 103 | 6 | 87 | 264 | 15 | 170 | 1.14e-11 | 65.9 |
MS.gene08781.t1 | AT5G26960 | 29.185 | 233 | 143 | 8 | 84 | 304 | 44 | 266 | 1.28e-11 | 66.6 |
MS.gene08781.t1 | AT1G19460 | 21.713 | 327 | 205 | 13 | 87 | 385 | 58 | 361 | 1.80e-11 | 66.2 |
MS.gene08781.t1 | AT1G31350 | 20.630 | 349 | 234 | 10 | 83 | 400 | 71 | 407 | 1.89e-11 | 66.2 |
Find 114 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAGCTCTTGTTTCACTTAA+TGG | 0.104977 | 4.2:+12814304 | MS.gene08781:CDS |
CAATCCCTCCCGCCTGTTCC+TGG | 0.147139 | 4.2:+12813683 | MS.gene08781:CDS |
GGTCTTTAGTTAGGAATTTA+TGG | 0.197065 | 4.2:+12814446 | MS.gene08781:CDS |
GCGGGAGGGATTGCCATATT+TGG | 0.244284 | 4.2:-12813673 | None:intergenic |
TTGACCCTATCTACCAAATA+TGG | 0.280582 | 4.2:+12813660 | MS.gene08781:CDS |
TTTATTGGTGTTATTCATAA+TGG | 0.293556 | 4.2:+12814022 | MS.gene08781:CDS |
ACGACCATTCCATTGTTTAC+TGG | 0.294115 | 4.2:-12814124 | None:intergenic |
ACAACGCACGTACAAATAAA+TGG | 0.313254 | 4.2:+12813816 | MS.gene08781:CDS |
TATTCTGAAGCATTGGGATT+TGG | 0.319911 | 4.2:+12813710 | MS.gene08781:CDS |
TGTGCATTCGGGTTTATATC+AGG | 0.324598 | 4.2:-12813380 | None:intergenic |
TGACGTTTCCGCAGCATATC+AGG | 0.328469 | 4.2:-12813848 | None:intergenic |
TTATGAATAACACCAATAAA+AGG | 0.331081 | 4.2:-12814019 | None:intergenic |
AGCTCCATCTGTTCCGATTA+GGG | 0.347050 | 4.2:-12813967 | None:intergenic |
AATCCCTCCCGCCTGTTCCT+GGG | 0.349626 | 4.2:+12813684 | MS.gene08781:CDS |
AAGCTCCATCTGTTCCGATT+AGG | 0.349975 | 4.2:-12813968 | None:intergenic |
GATTGCCATATTTGGTAGAT+AGG | 0.357958 | 4.2:-12813665 | None:intergenic |
ATCGATAGCAGGCTTCATTT+AGG | 0.362076 | 4.2:+12814259 | MS.gene08781:CDS |
CACCTCTGGGAAAATATTGC+TGG | 0.367840 | 4.2:+12814409 | MS.gene08781:CDS |
TGCTATTGTAAAGTAGATTC+AGG | 0.375567 | 4.2:+12813299 | MS.gene08781:CDS |
TAAACTCAAAGTCTATGATA+TGG | 0.375642 | 4.2:+12814213 | MS.gene08781:CDS |
AAAGAATCAAAGTACCAAAA+AGG | 0.387797 | 4.2:-12813227 | None:intergenic |
GGTTGCCACTTGTACTTGTT+TGG | 0.403994 | 4.2:+12813749 | MS.gene08781:CDS |
ATGATATGGCGACGGATTCA+TGG | 0.409397 | 4.2:+12814227 | MS.gene08781:CDS |
CAAATCACGTTGATGGTGAT+TGG | 0.410564 | 4.2:+12812591 | MS.gene08781:CDS |
AATCCAAGTATCTCACTTAA+CGG | 0.412505 | 4.2:+12814157 | MS.gene08781:CDS |
CTGAGGTTTACGACCCTAAT+CGG | 0.421824 | 4.2:+12813954 | MS.gene08781:CDS |
AGATGGTATCGCCTTCTGTC+TGG | 0.422115 | 4.2:+12813539 | MS.gene08781:CDS |
TCCATTGTTTACTGGAGTCC+AGG | 0.429205 | 4.2:-12814116 | None:intergenic |
GGGGCGAGGAAGTTTGTTCC+AGG | 0.432644 | 4.2:+12813338 | MS.gene08781:CDS |
AATAACTGCCTCTATGTTGC+TGG | 0.434024 | 4.2:+12813893 | MS.gene08781:CDS |
TTGAAAACAATCCTCACCTC+TGG | 0.437794 | 4.2:+12814395 | MS.gene08781:CDS |
TCTTGGAATGGCAGAAGAAT+GGG | 0.438690 | 4.2:+12813589 | MS.gene08781:CDS |
GTCTTGGAATGGCAGAAGAA+TGG | 0.439174 | 4.2:+12813588 | MS.gene08781:CDS |
GGGGAATATTCTGAAGCATT+GGG | 0.439296 | 4.2:+12813704 | MS.gene08781:CDS |
GTTCAGCCTCCTTTGCTACC+TGG | 0.446688 | 4.2:+12813437 | MS.gene08781:CDS |
TCAGAATATTCCCCAGGAAC+AGG | 0.449230 | 4.2:-12813695 | None:intergenic |
TCAGGCCTGAAAACAGTAGC+TGG | 0.451037 | 4.2:+12813317 | MS.gene08781:CDS |
CTTTGAGTTTACAGCCGTCT+TGG | 0.451770 | 4.2:-12814201 | None:intergenic |
CAAGCAATAGCAAGATCATC+AGG | 0.451957 | 4.2:-12813464 | None:intergenic |
TTTGGCTGTGCCGTTCTTAG+TGG | 0.453925 | 4.2:+12813728 | MS.gene08781:CDS |
TGAACATAGGAAACTGCGTT+TGG | 0.455533 | 4.2:+12813508 | MS.gene08781:CDS |
GTCCTGTCAGGTCTTTAGTT+AGG | 0.455869 | 4.2:+12814437 | MS.gene08781:CDS |
GAAATGTCAAATCACGTTGA+TGG | 0.457313 | 4.2:+12812584 | None:intergenic |
TATTCGCTCCGGAAAAGTCT+TGG | 0.457791 | 4.2:+12813572 | MS.gene08781:CDS |
TGGGGAATATTCTGAAGCAT+TGG | 0.458628 | 4.2:+12813703 | MS.gene08781:CDS |
CTGGGAAAATATTGCTGGAA+AGG | 0.473920 | 4.2:+12814414 | MS.gene08781:CDS |
TGGATGCATATCTTTGATCC+TGG | 0.484538 | 4.2:-12813356 | None:intergenic |
CAACAATATGAGCATCAGTC+TGG | 0.486023 | 4.2:+12814345 | MS.gene08781:CDS |
TGCGTTTGGTTTGCAAGAGA+TGG | 0.486322 | 4.2:+12813522 | MS.gene08781:CDS |
TCTCCGTTAAGTGAGATACT+TGG | 0.486498 | 4.2:-12814160 | None:intergenic |
GGAAGAAGTTTATCGATAGC+AGG | 0.495335 | 4.2:+12814248 | MS.gene08781:CDS |
ATCCCTCCCGCCTGTTCCTG+GGG | 0.498984 | 4.2:+12813685 | MS.gene08781:CDS |
TGCCACTTGTACTTGTTTGG+TGG | 0.513695 | 4.2:+12813752 | MS.gene08781:CDS |
CAGTTTCCTATGTTCAACTC+GGG | 0.513705 | 4.2:-12813501 | None:intergenic |
AATTTATGGTCTACTATCGC+AGG | 0.517084 | 4.2:+12814460 | MS.gene08781:CDS |
TTGCTGGAAAGGGTCCTGTC+AGG | 0.517356 | 4.2:+12814425 | MS.gene08781:CDS |
GGTATCGGATTCCTGTGAAT+AGG | 0.523925 | 4.2:-12814095 | None:intergenic |
CATTCGGGTTTATATCAGGT+TGG | 0.524469 | 4.2:-12813376 | None:intergenic |
AGTAAACAATGGAATGGTCG+TGG | 0.529726 | 4.2:+12814126 | MS.gene08781:CDS |
ATTCACAGGAATCCGATACC+TGG | 0.530018 | 4.2:+12814098 | MS.gene08781:CDS |
AAATCACGTTGATGGTGATT+GGG | 0.531227 | 4.2:+12812592 | MS.gene08781:CDS |
ATTGCCATATTTGGTAGATA+GGG | 0.532627 | 4.2:-12813664 | None:intergenic |
GTTTACTGGAGTCCAGGTAT+CGG | 0.532775 | 4.2:-12814110 | None:intergenic |
TGGTGGAAGAGATCCGTTGA+AGG | 0.541573 | 4.2:+12813769 | MS.gene08781:CDS |
CAGGCCTGAAAACAGTAGCT+GGG | 0.543433 | 4.2:+12813318 | MS.gene08781:CDS |
TGGGAAAATATTGCTGGAAA+GGG | 0.544190 | 4.2:+12814415 | MS.gene08781:CDS |
AAAAGAAATTTCCAGACAGA+AGG | 0.548143 | 4.2:-12813550 | None:intergenic |
GAACAGATGGAGCTTTATCT+CGG | 0.551686 | 4.2:+12813976 | MS.gene08781:CDS |
CTCGGAGATGACCACAGCTA+TGG | 0.552147 | 4.2:+12813994 | MS.gene08781:CDS |
TCAGGAAGACCAGGTAGCAA+AGG | 0.554838 | 4.2:-12813446 | None:intergenic |
TTCCTAACTAAAGACCTGAC+AGG | 0.558546 | 4.2:-12814439 | None:intergenic |
TGAAAACAGTAGCTGGGGCG+AGG | 0.559188 | 4.2:+12813324 | MS.gene08781:CDS |
CATATGTGAAGCCTATTCAC+AGG | 0.559893 | 4.2:+12814084 | MS.gene08781:CDS |
GGAAGACCAGGTAGCAAAGG+AGG | 0.560707 | 4.2:-12813443 | None:intergenic |
TATGCACTTGATTGCCAAGA+CGG | 0.568382 | 4.2:+12814187 | MS.gene08781:CDS |
GCAAGATCATCAGGAAGACC+AGG | 0.572772 | 4.2:-12813455 | None:intergenic |
AAGAACTCTTCGATCTGCTG+AGG | 0.575958 | 4.2:+12813937 | MS.gene08781:CDS |
ACTAACAGGTAAAGTTTCAC+AGG | 0.577126 | 4.2:+12813262 | MS.gene08781:intron |
TTCCACCAAACAAGTACAAG+TGG | 0.579081 | 4.2:-12813754 | None:intergenic |
TGAAAACAATCCTCACCTCT+GGG | 0.580142 | 4.2:+12814396 | MS.gene08781:CDS |
GTGTACCCCGAGTTGAACAT+AGG | 0.580144 | 4.2:+12813495 | MS.gene08781:CDS |
CTGCCTCTATGTTGCTGGTG+GGG | 0.582217 | 4.2:+12813898 | MS.gene08781:CDS |
GCAGTTTCCTATGTTCAACT+CGG | 0.584524 | 4.2:-12813502 | None:intergenic |
AACTGCCTCTATGTTGCTGG+TGG | 0.585089 | 4.2:+12813896 | MS.gene08781:CDS |
AATATTCCCCAGGAACAGGC+GGG | 0.587157 | 4.2:-12813691 | None:intergenic |
GGTGGAAGAGATCCGTTGAA+GGG | 0.595602 | 4.2:+12813770 | MS.gene08781:CDS |
ACGACCCTAATCGGAACAGA+TGG | 0.598075 | 4.2:+12813963 | MS.gene08781:CDS |
AATGCTTCAGAATATTCCCC+AGG | 0.600246 | 4.2:-12813701 | None:intergenic |
GTGTTATTCATAATGGCACA+TGG | 0.603825 | 4.2:+12814029 | MS.gene08781:CDS |
ACTGCCTCTATGTTGCTGGT+GGG | 0.605055 | 4.2:+12813897 | MS.gene08781:CDS |
GACTCCAGTAAACAATGGAA+TGG | 0.605106 | 4.2:+12814120 | MS.gene08781:CDS |
TTCCCCAGGAACAGGCGGGA+GGG | 0.606081 | 4.2:-12813687 | None:intergenic |
CGCCTCATAGATCCCTTCAA+CGG | 0.606636 | 4.2:-12813782 | None:intergenic |
TGGTCTACTATCGCAGGGCG+CGG | 0.607872 | 4.2:+12814466 | MS.gene08781:CDS |
ATTCCCCACCAGCAACATAG+AGG | 0.608916 | 4.2:-12813901 | None:intergenic |
GCTCCGGAAAAGTCTTGGAA+TGG | 0.613465 | 4.2:+12813577 | MS.gene08781:CDS |
ACAATGGAATGGTCGTGGGA+TGG | 0.614216 | 4.2:+12814131 | MS.gene08781:CDS |
ATTCCCCAGGAACAGGCGGG+AGG | 0.614780 | 4.2:-12813688 | None:intergenic |
ATCCGTTGAAGGGATCTATG+AGG | 0.615494 | 4.2:+12813780 | MS.gene08781:CDS |
GAATATTCCCCAGGAACAGG+CGG | 0.615952 | 4.2:-12813692 | None:intergenic |
CAAGTGGCAACCACTAAGAA+CGG | 0.620531 | 4.2:-12813738 | None:intergenic |
TCTACTATCGCAGGGCGCGG+TGG | 0.621549 | 4.2:+12814469 | MS.gene08781:CDS |
ACCTGGACTCCAGTAAACAA+TGG | 0.623432 | 4.2:+12814115 | MS.gene08781:CDS |
GTAAACAATGGAATGGTCGT+GGG | 0.628265 | 4.2:+12814127 | MS.gene08781:CDS |
GTTGCTGGTGGGGAATGTAA+AGG | 0.635408 | 4.2:+12813908 | MS.gene08781:CDS |
CAAAGTCTATGATATGGCGA+CGG | 0.642307 | 4.2:+12814219 | MS.gene08781:CDS |
ATTTATGGTCTACTATCGCA+GGG | 0.652108 | 4.2:+12814461 | MS.gene08781:CDS |
AGGCCTGAAAACAGTAGCTG+GGG | 0.656010 | 4.2:+12813319 | MS.gene08781:CDS |
TGTCATCAAAAGAGACCGTG+AGG | 0.661494 | 4.2:+12813616 | MS.gene08781:CDS |
ACAGAGCACCTGATATGCTG+CGG | 0.670843 | 4.2:+12813840 | MS.gene08781:CDS |
AGTTTCCTATGTTCAACTCG+GGG | 0.678256 | 4.2:-12813500 | None:intergenic |
GTCATCAAAAGAGACCGTGA+GGG | 0.680560 | 4.2:+12813617 | MS.gene08781:CDS |
ATATAAACCCGAATGCACAC+AGG | 0.688244 | 4.2:+12813384 | MS.gene08781:CDS |
AATAAAAGGAACCATAGCTG+TGG | 0.696250 | 4.2:-12814005 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTTAATTAATAAAACAAC+AGG | - | chr4.2:12812973-12812992 | None:intergenic | 10.0% |
!!! | ATTTAATTTAATAAAACAAC+AGG | - | chr4.2:12812825-12812844 | None:intergenic | 10.0% |
!!! | CTTGATAAAATAATTTATTT+TGG | + | chr4.2:12813186-12813205 | MS.gene08781:intron | 10.0% |
!! | AAAATTATTACGTTCAAAGT+AGG | - | chr4.2:12812679-12812698 | None:intergenic | 20.0% |
!! | TTATGAATAACACCAATAAA+AGG | - | chr4.2:12814022-12814041 | None:intergenic | 20.0% |
!! | TTCAACATATATATACTAAC+AGG | + | chr4.2:12813248-12813267 | MS.gene08781:intron | 20.0% |
!!! | TATTTTGGTGCATATTATTA+GGG | + | chr4.2:12813201-12813220 | MS.gene08781:intron | 20.0% |
!!! | TTATTTTGGTGCATATTATT+AGG | + | chr4.2:12813200-12813219 | MS.gene08781:intron | 20.0% |
!!! | TTTATTGGTGTTATTCATAA+TGG | + | chr4.2:12814022-12814041 | MS.gene08781:CDS | 20.0% |
! | TAAACTCAAAGTCTATGATA+TGG | + | chr4.2:12814213-12814232 | MS.gene08781:CDS | 25.0% |
! | TTGCAGCAATTAAAGTAAAA+CGG | + | chr4.2:12813101-12813120 | MS.gene08781:intron | 25.0% |
!! | AAAGAATCAAAGTACCAAAA+AGG | - | chr4.2:12813230-12813249 | None:intergenic | 25.0% |
AAAAGAAATTTCCAGACAGA+AGG | - | chr4.2:12813553-12813572 | None:intergenic | 30.0% | |
AATCCAAGTATCTCACTTAA+CGG | + | chr4.2:12814157-12814176 | MS.gene08781:CDS | 30.0% | |
ATTGCCATATTTGGTAGATA+GGG | - | chr4.2:12813667-12813686 | None:intergenic | 30.0% | |
CAAAGTAGGTGATAAAATGT+AGG | - | chr4.2:12812665-12812684 | None:intergenic | 30.0% | |
GGTCTTTAGTTAGGAATTTA+TGG | + | chr4.2:12814446-12814465 | MS.gene08781:CDS | 30.0% | |
TAGTTTCATGCTTCATTATG+CGG | - | chr4.2:12812852-12812871 | None:intergenic | 30.0% | |
TCACAAATCTAAGTTTGTGA+AGG | + | chr4.2:12812916-12812935 | MS.gene08781:intron | 30.0% | |
TGCTATTGTAAAGTAGATTC+AGG | + | chr4.2:12813299-12813318 | MS.gene08781:CDS | 30.0% | |
TTTACTTTAATTGCTGCAAG+CGG | - | chr4.2:12813100-12813119 | None:intergenic | 30.0% | |
! | GAAATTTCTTTTATTCGCTC+CGG | + | chr4.2:12813561-12813580 | MS.gene08781:CDS | 30.0% |
! | TATTATTAGGGATGCCTTTT+TGG | + | chr4.2:12813213-12813232 | MS.gene08781:intron | 30.0% |
AAGTTTGTGAAGGAAAACTC+TGG | + | chr4.2:12812926-12812945 | MS.gene08781:intron | 35.0% | |
AATAAAAGGAACCATAGCTG+TGG | - | chr4.2:12814008-12814027 | None:intergenic | 35.0% | |
AATTTATGGTCTACTATCGC+AGG | + | chr4.2:12814460-12814479 | MS.gene08781:CDS | 35.0% | |
ACAAACATCATGAGATCAAC+AGG | - | chr4.2:12813037-12813056 | None:intergenic | 35.0% | |
ACAACGCACGTACAAATAAA+TGG | + | chr4.2:12813816-12813835 | MS.gene08781:CDS | 35.0% | |
ACTAACAGGTAAAGTTTCAC+AGG | + | chr4.2:12813262-12813281 | MS.gene08781:intron | 35.0% | |
ATTTATGGTCTACTATCGCA+GGG | + | chr4.2:12814461-12814480 | MS.gene08781:CDS | 35.0% | |
GAAACTAATATTGCCTTGGT+TGG | + | chr4.2:12812865-12812884 | MS.gene08781:intron | 35.0% | |
GAGTTTGTGAAGGAAAATTC+CGG | + | chr4.2:12812778-12812797 | MS.gene08781:intron | 35.0% | |
GATCTCATGATGTTTGTGAT+GGG | + | chr4.2:12813040-12813059 | MS.gene08781:intron | 35.0% | |
GATTGCCATATTTGGTAGAT+AGG | - | chr4.2:12813668-12813687 | None:intergenic | 35.0% | |
GCATGAAACTAATATTGCCT+TGG | + | chr4.2:12812861-12812880 | MS.gene08781:intron | 35.0% | |
TGAAAGCAATATTGCCTTGT+TGG | + | chr4.2:12813011-12813030 | MS.gene08781:intron | 35.0% | |
TGATCTCATGATGTTTGTGA+TGG | + | chr4.2:12813039-12813058 | MS.gene08781:intron | 35.0% | |
TGGGAAAATATTGCTGGAAA+GGG | + | chr4.2:12814415-12814434 | MS.gene08781:CDS | 35.0% | |
TTACTTTAATTGCTGCAAGC+GGG | - | chr4.2:12813099-12813118 | None:intergenic | 35.0% | |
TTGACCCTATCTACCAAATA+TGG | + | chr4.2:12813660-12813679 | MS.gene08781:CDS | 35.0% | |
! | AATGGCACATGGTTTTTGAA+GGG | + | chr4.2:12814040-12814059 | MS.gene08781:CDS | 35.0% |
! | ACAGCTATGGTTCCTTTTAT+TGG | + | chr4.2:12814007-12814026 | MS.gene08781:CDS | 35.0% |
! | GCAATGAAATTTTTCCCTCA+CGG | - | chr4.2:12813634-12813653 | None:intergenic | 35.0% |
! | GGAATTTTCCTTCACAAACT+CGG | - | chr4.2:12812779-12812798 | None:intergenic | 35.0% |
! | GTGTTATTCATAATGGCACA+TGG | + | chr4.2:12814029-12814048 | MS.gene08781:CDS | 35.0% |
! | TAATGGCACATGGTTTTTGA+AGG | + | chr4.2:12814039-12814058 | MS.gene08781:CDS | 35.0% |
! | TGTTTGTGATGGGAATAACT+TGG | + | chr4.2:12813050-12813069 | MS.gene08781:intron | 35.0% |
! | TTTTTGTTCCTGTGTGCATT+CGG | - | chr4.2:12813395-12813414 | None:intergenic | 35.0% |
!! | AAATCACGTTGATGGTGATT+GGG | + | chr4.2:12812592-12812611 | MS.gene08781:CDS | 35.0% |
!! | TATTCTGAAGCATTGGGATT+TGG | + | chr4.2:12813710-12813729 | MS.gene08781:CDS | 35.0% |
AACAGCTTGGGCTAATATGA+AGG | - | chr4.2:12812740-12812759 | None:intergenic | 40.0% | |
AATAACTGCCTCTATGTTGC+TGG | + | chr4.2:12813893-12813912 | MS.gene08781:CDS | 40.0% | |
AATGCTTCAGAATATTCCCC+AGG | - | chr4.2:12813704-12813723 | None:intergenic | 40.0% | |
ACGACCATTCCATTGTTTAC+TGG | - | chr4.2:12814127-12814146 | None:intergenic | 40.0% | |
AGTAAACAATGGAATGGTCG+TGG | + | chr4.2:12814126-12814145 | MS.gene08781:CDS | 40.0% | |
AGTTTCCTATGTTCAACTCG+GGG | - | chr4.2:12813503-12813522 | None:intergenic | 40.0% | |
ATATAAACCCGAATGCACAC+AGG | + | chr4.2:12813384-12813403 | MS.gene08781:CDS | 40.0% | |
ATCGATAGCAGGCTTCATTT+AGG | + | chr4.2:12814259-12814278 | MS.gene08781:CDS | 40.0% | |
ATTCCGGTGCATGTATGTAT+CGG | + | chr4.2:12812794-12812813 | MS.gene08781:intron | 40.0% | |
CAAAGTCTATGATATGGCGA+CGG | + | chr4.2:12814219-12814238 | MS.gene08781:CDS | 40.0% | |
CAACAATATGAGCATCAGTC+TGG | + | chr4.2:12814345-12814364 | MS.gene08781:CDS | 40.0% | |
CAAGCAATAGCAAGATCATC+AGG | - | chr4.2:12813467-12813486 | None:intergenic | 40.0% | |
CAGTTTCCTATGTTCAACTC+GGG | - | chr4.2:12813504-12813523 | None:intergenic | 40.0% | |
CATATGTGAAGCCTATTCAC+AGG | + | chr4.2:12814084-12814103 | MS.gene08781:CDS | 40.0% | |
CTGGGAAAATATTGCTGGAA+AGG | + | chr4.2:12814414-12814433 | MS.gene08781:CDS | 40.0% | |
GACTCCAGTAAACAATGGAA+TGG | + | chr4.2:12814120-12814139 | MS.gene08781:CDS | 40.0% | |
GCAGTTTCCTATGTTCAACT+CGG | - | chr4.2:12813505-12813524 | None:intergenic | 40.0% | |
GGAAGAAGTTTATCGATAGC+AGG | + | chr4.2:12814248-12814267 | MS.gene08781:CDS | 40.0% | |
GTAAACAATGGAATGGTCGT+GGG | + | chr4.2:12814127-12814146 | MS.gene08781:CDS | 40.0% | |
TACTTTAATTGCTGCAAGCG+GGG | - | chr4.2:12813098-12813117 | None:intergenic | 40.0% | |
TATGCACTTGATTGCCAAGA+CGG | + | chr4.2:12814187-12814206 | MS.gene08781:CDS | 40.0% | |
TCACAAATCCGAGTTTGTGA+AGG | + | chr4.2:12812768-12812787 | MS.gene08781:intron | 40.0% | |
TCATATTAGCCCAAGCTGTT+GGG | + | chr4.2:12812740-12812759 | MS.gene08781:intron | 40.0% | |
TCTCCGTTAAGTGAGATACT+TGG | - | chr4.2:12814163-12814182 | None:intergenic | 40.0% | |
TCTTGGAATGGCAGAAGAAT+GGG | + | chr4.2:12813589-12813608 | MS.gene08781:CDS | 40.0% | |
TGAAAACAATCCTCACCTCT+GGG | + | chr4.2:12814396-12814415 | MS.gene08781:CDS | 40.0% | |
TGAACATAGGAAACTGCGTT+TGG | + | chr4.2:12813508-12813527 | MS.gene08781:CDS | 40.0% | |
TGAGTTCAATAGACCAACCA+AGG | - | chr4.2:12812881-12812900 | None:intergenic | 40.0% | |
TGGATGCATATCTTTGATCC+TGG | - | chr4.2:12813359-12813378 | None:intergenic | 40.0% | |
TTCATATTAGCCCAAGCTGT+TGG | + | chr4.2:12812739-12812758 | MS.gene08781:intron | 40.0% | |
TTCCACCAAACAAGTACAAG+TGG | - | chr4.2:12813757-12813776 | None:intergenic | 40.0% | |
TTCCTAACTAAAGACCTGAC+AGG | - | chr4.2:12814442-12814461 | None:intergenic | 40.0% | |
TTGAAAACAATCCTCACCTC+TGG | + | chr4.2:12814395-12814414 | MS.gene08781:CDS | 40.0% | |
! | CATTCGGGTTTATATCAGGT+TGG | - | chr4.2:12813379-12813398 | None:intergenic | 40.0% |
! | GAACAGATGGAGCTTTATCT+CGG | + | chr4.2:12813976-12813995 | MS.gene08781:CDS | 40.0% |
! | GCAGCTCTTGTTTCACTTAA+TGG | + | chr4.2:12814304-12814323 | MS.gene08781:CDS | 40.0% |
! | TGTGCATTCGGGTTTATATC+AGG | - | chr4.2:12813383-12813402 | None:intergenic | 40.0% |
! | TTCCAGCAATATTTTCCCAG+AGG | - | chr4.2:12814414-12814433 | None:intergenic | 40.0% |
! | TTGTGATGGGAATAACTTGG+TGG | + | chr4.2:12813053-12813072 | MS.gene08781:intron | 40.0% |
! | TTGTTTTCAACGCGTCTGTT+TGG | - | chr4.2:12814385-12814404 | None:intergenic | 40.0% |
! | TTTTGTTCCTGTGTGCATTC+GGG | - | chr4.2:12813394-12813413 | None:intergenic | 40.0% |
!! | ATGGCACATGGTTTTTGAAG+GGG | + | chr4.2:12814041-12814060 | MS.gene08781:CDS | 40.0% |
!! | CAAATCACGTTGATGGTGAT+TGG | + | chr4.2:12812591-12812610 | MS.gene08781:CDS | 40.0% |
!! | GACGCGTTTTAACAGAAAGA+CGG | - | chr4.2:12812712-12812731 | None:intergenic | 40.0% |
!! | GGGGAATATTCTGAAGCATT+GGG | + | chr4.2:12813704-12813723 | MS.gene08781:CDS | 40.0% |
!! | TGGGGAATATTCTGAAGCAT+TGG | + | chr4.2:12813703-12813722 | MS.gene08781:CDS | 40.0% |
AAGAACTCTTCGATCTGCTG+AGG | + | chr4.2:12813937-12813956 | MS.gene08781:CDS | 45.0% | |
AAGCTCCATCTGTTCCGATT+AGG | - | chr4.2:12813971-12813990 | None:intergenic | 45.0% | |
ACCTGGACTCCAGTAAACAA+TGG | + | chr4.2:12814115-12814134 | MS.gene08781:CDS | 45.0% | |
AGCTCCATCTGTTCCGATTA+GGG | - | chr4.2:12813970-12813989 | None:intergenic | 45.0% | |
ATCCGTTGAAGGGATCTATG+AGG | + | chr4.2:12813780-12813799 | MS.gene08781:CDS | 45.0% | |
ATGAGATCAACAGGCCAACA+AGG | - | chr4.2:12813028-12813047 | None:intergenic | 45.0% | |
ATTCACAGGAATCCGATACC+TGG | + | chr4.2:12814098-12814117 | MS.gene08781:CDS | 45.0% | |
CAAGTGGCAACCACTAAGAA+CGG | - | chr4.2:12813741-12813760 | None:intergenic | 45.0% | |
CTGAGGTTTACGACCCTAAT+CGG | + | chr4.2:12813954-12813973 | MS.gene08781:CDS | 45.0% | |
CTTCCGATACATACATGCAC+CGG | - | chr4.2:12812800-12812819 | None:intergenic | 45.0% | |
GTCATCAAAAGAGACCGTGA+GGG | + | chr4.2:12813617-12813636 | MS.gene08781:CDS | 45.0% | |
GTCCTGTCAGGTCTTTAGTT+AGG | + | chr4.2:12814437-12814456 | MS.gene08781:CDS | 45.0% | |
GTCTTGGAATGGCAGAAGAA+TGG | + | chr4.2:12813588-12813607 | MS.gene08781:CDS | 45.0% | |
GTTTACTGGAGTCCAGGTAT+CGG | - | chr4.2:12814113-12814132 | None:intergenic | 45.0% | |
TATTCGCTCCGGAAAAGTCT+TGG | + | chr4.2:12813572-12813591 | MS.gene08781:CDS | 45.0% | |
TCAGAATATTCCCCAGGAAC+AGG | - | chr4.2:12813698-12813717 | None:intergenic | 45.0% | |
TCCATTGTTTACTGGAGTCC+AGG | - | chr4.2:12814119-12814138 | None:intergenic | 45.0% | |
TGTCATCAAAAGAGACCGTG+AGG | + | chr4.2:12813616-12813635 | MS.gene08781:CDS | 45.0% | |
! | ATGATATGGCGACGGATTCA+TGG | + | chr4.2:12814227-12814246 | MS.gene08781:CDS | 45.0% |
! | CACCTCTGGGAAAATATTGC+TGG | + | chr4.2:12814409-12814428 | MS.gene08781:CDS | 45.0% |
! | CTGCCATTCCAAGACTTTTC+CGG | - | chr4.2:12813583-12813602 | None:intergenic | 45.0% |
! | CTGCGGAAACGTCATCTTTT+TGG | + | chr4.2:12813857-12813876 | MS.gene08781:CDS | 45.0% |
! | CTTTGAGTTTACAGCCGTCT+TGG | - | chr4.2:12814204-12814223 | None:intergenic | 45.0% |
! | GCAATATTTTCCCAGAGGTG+AGG | - | chr4.2:12814409-12814428 | None:intergenic | 45.0% |
! | GGTATCGGATTCCTGTGAAT+AGG | - | chr4.2:12814098-12814117 | None:intergenic | 45.0% |
! | GGTTGCCACTTGTACTTGTT+TGG | + | chr4.2:12813749-12813768 | MS.gene08781:CDS | 45.0% |
! | TGCCACTTGTACTTGTTTGG+TGG | + | chr4.2:12813752-12813771 | MS.gene08781:CDS | 45.0% |
!! | ACATGGTTTTTGAAGGGGCT+CGG | + | chr4.2:12814046-12814065 | MS.gene08781:CDS | 45.0% |
!! | TGCGTTTGGTTTGCAAGAGA+TGG | + | chr4.2:12813522-12813541 | MS.gene08781:CDS | 45.0% |
AACTGCCTCTATGTTGCTGG+TGG | + | chr4.2:12813896-12813915 | MS.gene08781:CDS | 50.0% | |
AATATTCCCCAGGAACAGGC+GGG | - | chr4.2:12813694-12813713 | None:intergenic | 50.0% | |
ACAATGGAATGGTCGTGGGA+TGG | + | chr4.2:12814131-12814150 | MS.gene08781:CDS | 50.0% | |
ACGACCCTAATCGGAACAGA+TGG | + | chr4.2:12813963-12813982 | MS.gene08781:CDS | 50.0% | |
ACTGCCTCTATGTTGCTGGT+GGG | + | chr4.2:12813897-12813916 | MS.gene08781:CDS | 50.0% | |
AGATGGTATCGCCTTCTGTC+TGG | + | chr4.2:12813539-12813558 | MS.gene08781:CDS | 50.0% | |
AGGCCTGAAAACAGTAGCTG+GGG | + | chr4.2:12813319-12813338 | MS.gene08781:CDS | 50.0% | |
ATTCCCCACCAGCAACATAG+AGG | - | chr4.2:12813904-12813923 | None:intergenic | 50.0% | |
CAGGCCTGAAAACAGTAGCT+GGG | + | chr4.2:12813318-12813337 | MS.gene08781:CDS | 50.0% | |
CGCCTCATAGATCCCTTCAA+CGG | - | chr4.2:12813785-12813804 | None:intergenic | 50.0% | |
GAATATTCCCCAGGAACAGG+CGG | - | chr4.2:12813695-12813714 | None:intergenic | 50.0% | |
GCAAGATCATCAGGAAGACC+AGG | - | chr4.2:12813458-12813477 | None:intergenic | 50.0% | |
GCTCCGGAAAAGTCTTGGAA+TGG | + | chr4.2:12813577-12813596 | MS.gene08781:CDS | 50.0% | |
GGTGGAAGAGATCCGTTGAA+GGG | + | chr4.2:12813770-12813789 | MS.gene08781:CDS | 50.0% | |
GTGAAGAAGCCCAACAGCTT+GGG | - | chr4.2:12812752-12812771 | None:intergenic | 50.0% | |
GTTGCTGGTGGGGAATGTAA+AGG | + | chr4.2:12813908-12813927 | MS.gene08781:CDS | 50.0% | |
TAATTGCTGCAAGCGGGGAA+CGG | - | chr4.2:12813093-12813112 | None:intergenic | 50.0% | |
TCAGGAAGACCAGGTAGCAA+AGG | - | chr4.2:12813449-12813468 | None:intergenic | 50.0% | |
TCAGGCCTGAAAACAGTAGC+TGG | + | chr4.2:12813317-12813336 | MS.gene08781:CDS | 50.0% | |
TGACGTTTCCGCAGCATATC+AGG | - | chr4.2:12813851-12813870 | None:intergenic | 50.0% | |
TGGTGGAAGAGATCCGTTGA+AGG | + | chr4.2:12813769-12813788 | MS.gene08781:CDS | 50.0% | |
TGTGAAGAAGCCCAACAGCT+TGG | - | chr4.2:12812753-12812772 | None:intergenic | 50.0% | |
! | ACAGAGCACCTGATATGCTG+CGG | + | chr4.2:12813840-12813859 | MS.gene08781:CDS | 50.0% |
! | GTGTACCCCGAGTTGAACAT+AGG | + | chr4.2:12813495-12813514 | MS.gene08781:CDS | 50.0% |
! | TTTGGCTGTGCCGTTCTTAG+TGG | + | chr4.2:12813728-12813747 | MS.gene08781:CDS | 50.0% |
!! | CATGGTTTTTGAAGGGGCTC+GGG | + | chr4.2:12814047-12814066 | MS.gene08781:CDS | 50.0% |
CTCGGAGATGACCACAGCTA+TGG | + | chr4.2:12813994-12814013 | MS.gene08781:CDS | 55.0% | |
CTGCCTCTATGTTGCTGGTG+GGG | + | chr4.2:12813898-12813917 | MS.gene08781:CDS | 55.0% | |
GCGGGAGGGATTGCCATATT+TGG | - | chr4.2:12813676-12813695 | None:intergenic | 55.0% | |
GGAAGACCAGGTAGCAAAGG+AGG | - | chr4.2:12813446-12813465 | None:intergenic | 55.0% | |
GTTCAGCCTCCTTTGCTACC+TGG | + | chr4.2:12813437-12813456 | MS.gene08781:CDS | 55.0% | |
TGAAAACAGTAGCTGGGGCG+AGG | + | chr4.2:12813324-12813343 | MS.gene08781:CDS | 55.0% | |
TTGCTGGAAAGGGTCCTGTC+AGG | + | chr4.2:12814425-12814444 | MS.gene08781:CDS | 55.0% | |
! | TCGCCCCAGCTACTGTTTTC+AGG | - | chr4.2:12813325-12813344 | None:intergenic | 55.0% |
AATCCCTCCCGCCTGTTCCT+GGG | + | chr4.2:12813684-12813703 | MS.gene08781:CDS | 60.0% | |
TGGTCTACTATCGCAGGGCG+CGG | + | chr4.2:12814466-12814485 | MS.gene08781:CDS | 60.0% | |
! | GGGGCGAGGAAGTTTGTTCC+AGG | + | chr4.2:12813338-12813357 | MS.gene08781:CDS | 60.0% |
ATCCCTCCCGCCTGTTCCTG+GGG | + | chr4.2:12813685-12813704 | MS.gene08781:CDS | 65.0% | |
ATTCCCCAGGAACAGGCGGG+AGG | - | chr4.2:12813691-12813710 | None:intergenic | 65.0% | |
CAATCCCTCCCGCCTGTTCC+TGG | + | chr4.2:12813683-12813702 | MS.gene08781:CDS | 65.0% | |
TCTACTATCGCAGGGCGCGG+TGG | + | chr4.2:12814469-12814488 | MS.gene08781:CDS | 65.0% | |
TTCCCCAGGAACAGGCGGGA+GGG | - | chr4.2:12813690-12813709 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 12812587 | 12814534 | 12812587 | ID=MS.gene08781 |
chr4.2 | mRNA | 12812587 | 12814534 | 12812587 | ID=MS.gene08781.t1;Parent=MS.gene08781 |
chr4.2 | exon | 12812587 | 12812640 | 12812587 | ID=MS.gene08781.t1.exon1;Parent=MS.gene08781.t1 |
chr4.2 | CDS | 12812587 | 12812640 | 12812587 | ID=cds.MS.gene08781.t1;Parent=MS.gene08781.t1 |
chr4.2 | exon | 12813222 | 12813234 | 12813222 | ID=MS.gene08781.t1.exon2;Parent=MS.gene08781.t1 |
chr4.2 | CDS | 12813222 | 12813234 | 12813222 | ID=cds.MS.gene08781.t1;Parent=MS.gene08781.t1 |
chr4.2 | exon | 12813270 | 12814534 | 12813270 | ID=MS.gene08781.t1.exon3;Parent=MS.gene08781.t1 |
chr4.2 | CDS | 12813270 | 12814534 | 12813270 | ID=cds.MS.gene08781.t1;Parent=MS.gene08781.t1 |
Gene Sequence |
Protein sequence |