Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31111.t1 | XP_003597408.1 | 96.6 | 438 | 15 | 0 | 68 | 505 | 1 | 438 | 3.70E-217 | 764.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31111.t1 | Q9FLE8 | 60.5 | 38 | 15 | 0 | 3 | 40 | 326 | 363 | 1.9e-07 | 58.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31111.t1 | Q2HS23 | 96.6 | 438 | 15 | 0 | 68 | 505 | 1 | 438 | 2.7e-217 | 764.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene31111 | 0.824451 | 8.02E-54 | -1.69E-46 |
| MS.gene04918 | MS.gene31111 | 0.819211 | 1.31E-52 | -1.69E-46 |
| MS.gene04919 | MS.gene31111 | 0.800048 | 1.73E-48 | -1.69E-46 |
| MS.gene04920 | MS.gene31111 | 0.81133 | 7.39E-51 | -1.69E-46 |
| MS.gene049300 | MS.gene31111 | 0.808129 | 3.60E-50 | -1.69E-46 |
| MS.gene049350 | MS.gene31111 | 0.809414 | 1.91E-50 | -1.69E-46 |
| MS.gene049368 | MS.gene31111 | 0.801879 | 7.31E-49 | -1.69E-46 |
| MS.gene049411 | MS.gene31111 | 0.800615 | 1.33E-48 | -1.69E-46 |
| MS.gene049499 | MS.gene31111 | 0.854463 | 1.21E-61 | -1.69E-46 |
| MS.gene049711 | MS.gene31111 | 0.82153 | 3.84E-53 | -1.69E-46 |
| MS.gene049807 | MS.gene31111 | 0.837711 | 4.42E-57 | -1.69E-46 |
| MS.gene050258 | MS.gene31111 | 0.82158 | 3.74E-53 | -1.69E-46 |
| MS.gene050646 | MS.gene31111 | 0.810956 | 8.91E-51 | -1.69E-46 |
| MS.gene050945 | MS.gene31111 | 0.833446 | 5.31E-56 | -1.69E-46 |
| MS.gene051019 | MS.gene31111 | 0.823674 | 1.22E-53 | -1.69E-46 |
| MS.gene051538 | MS.gene31111 | 0.813236 | 2.83E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene31111 | 0.808957 | 2.40E-50 | -1.69E-46 |
| MS.gene052072 | MS.gene31111 | 0.930536 | 1.42E-93 | -1.69E-46 |
| MS.gene052168 | MS.gene31111 | 0.81809 | 2.35E-52 | -1.69E-46 |
| MS.gene052307 | MS.gene31111 | 0.83767 | 4.53E-57 | -1.69E-46 |
| MS.gene052514 | MS.gene31111 | 0.802978 | 4.34E-49 | -1.69E-46 |
| MS.gene052533 | MS.gene31111 | 0.824306 | 8.67E-54 | -1.69E-46 |
| MS.gene052609 | MS.gene31111 | 0.83722 | 5.91E-57 | -1.69E-46 |
| MS.gene052793 | MS.gene31111 | 0.80534 | 1.40E-49 | -1.69E-46 |
| MS.gene053272 | MS.gene31111 | -0.845125 | 4.94E-59 | -1.69E-46 |
| MS.gene053427 | MS.gene31111 | 0.818141 | 2.29E-52 | -1.69E-46 |
| MS.gene053541 | MS.gene31111 | 0.810409 | 1.17E-50 | -1.69E-46 |
| MS.gene053542 | MS.gene31111 | 0.817637 | 2.97E-52 | -1.69E-46 |
| MS.gene054004 | MS.gene31111 | 0.824667 | 7.13E-54 | -1.69E-46 |
| MS.gene054142 | MS.gene31111 | 0.842097 | 3.18E-58 | -1.69E-46 |
| MS.gene054178 | MS.gene31111 | 0.814886 | 1.23E-51 | -1.69E-46 |
| MS.gene054709 | MS.gene31111 | 0.840427 | 8.75E-58 | -1.69E-46 |
| MS.gene055339 | MS.gene31111 | 0.830454 | 2.91E-55 | -1.69E-46 |
| MS.gene055386 | MS.gene31111 | 0.827964 | 1.17E-54 | -1.69E-46 |
| MS.gene056519 | MS.gene31111 | 0.833589 | 4.89E-56 | -1.69E-46 |
| MS.gene056578 | MS.gene31111 | 0.801256 | 9.81E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene31111 | 0.827001 | 1.99E-54 | -1.69E-46 |
| MS.gene05686 | MS.gene31111 | 0.838622 | 2.58E-57 | -1.69E-46 |
| MS.gene057082 | MS.gene31111 | 0.804972 | 1.67E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene31111 | 0.86954 | 2.87E-66 | -1.69E-46 |
| MS.gene057132 | MS.gene31111 | 0.81557 | 8.64E-52 | -1.69E-46 |
| MS.gene058781 | MS.gene31111 | 0.85101 | 1.17E-60 | -1.69E-46 |
| MS.gene058783 | MS.gene31111 | 0.808071 | 3.71E-50 | -1.69E-46 |
| MS.gene05894 | MS.gene31111 | 0.81261 | 3.89E-51 | -1.69E-46 |
| MS.gene059146 | MS.gene31111 | 0.811104 | 8.27E-51 | -1.69E-46 |
| MS.gene059778 | MS.gene31111 | 0.862072 | 6.57E-64 | -1.69E-46 |
| MS.gene059802 | MS.gene31111 | 0.821017 | 5.05E-53 | -1.69E-46 |
| MS.gene05985 | MS.gene31111 | -0.842235 | 2.93E-58 | -1.69E-46 |
| MS.gene060522 | MS.gene31111 | 0.812895 | 3.37E-51 | -1.69E-46 |
| MS.gene060933 | MS.gene31111 | 0.866072 | 3.72E-65 | -1.69E-46 |
| MS.gene060935 | MS.gene31111 | 0.857102 | 2.05E-62 | -1.69E-46 |
| MS.gene060937 | MS.gene31111 | 0.873743 | 1.16E-67 | -1.69E-46 |
| MS.gene061100 | MS.gene31111 | 0.866726 | 2.31E-65 | -1.69E-46 |
| MS.gene061160 | MS.gene31111 | 0.850478 | 1.65E-60 | -1.69E-46 |
| MS.gene061188 | MS.gene31111 | 0.823674 | 1.22E-53 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31111.t1 | MTR_2g097780 | 96.575 | 438 | 15 | 0 | 68 | 505 | 1 | 438 | 0.0 | 843 |
| MS.gene31111.t1 | MTR_7g079015 | 88.636 | 44 | 5 | 0 | 2 | 45 | 58 | 101 | 7.25e-24 | 96.3 |
| MS.gene31111.t1 | MTR_6g042350 | 84.091 | 44 | 7 | 0 | 2 | 45 | 43 | 86 | 4.42e-23 | 94.0 |
| MS.gene31111.t1 | MTR_4g109990 | 84.091 | 44 | 7 | 0 | 7 | 50 | 35 | 78 | 7.12e-23 | 93.2 |
| MS.gene31111.t1 | MTR_1g098230 | 86.364 | 44 | 6 | 0 | 2 | 45 | 58 | 101 | 1.07e-22 | 93.2 |
| MS.gene31111.t1 | MTR_5g088530 | 88.636 | 44 | 4 | 1 | 2 | 45 | 65 | 107 | 3.66e-22 | 91.7 |
| MS.gene31111.t1 | MTR_1g095960 | 81.818 | 44 | 8 | 0 | 2 | 45 | 85 | 128 | 8.08e-21 | 88.6 |
| MS.gene31111.t1 | MTR_5g065050 | 82.927 | 41 | 7 | 0 | 5 | 45 | 61 | 101 | 9.75e-20 | 84.7 |
| MS.gene31111.t1 | MTR_6g011640 | 75.000 | 52 | 13 | 0 | 2 | 53 | 330 | 381 | 1.44e-19 | 91.3 |
| MS.gene31111.t1 | MTR_2g436640 | 81.818 | 44 | 8 | 0 | 2 | 45 | 87 | 130 | 1.75e-19 | 86.3 |
| MS.gene31111.t1 | MTR_2g028040 | 88.889 | 45 | 5 | 0 | 1 | 45 | 311 | 355 | 1.73e-18 | 87.4 |
| MS.gene31111.t1 | MTR_2g028040 | 88.889 | 45 | 4 | 1 | 2 | 45 | 58 | 102 | 4.87e-18 | 85.9 |
| MS.gene31111.t1 | MTR_2g028040 | 84.444 | 45 | 7 | 0 | 1 | 45 | 245 | 289 | 7.12e-17 | 82.4 |
| MS.gene31111.t1 | MTR_2g028040 | 93.939 | 33 | 2 | 0 | 14 | 46 | 197 | 229 | 7.30e-14 | 73.6 |
| MS.gene31111.t1 | MTR_7g078370 | 85.000 | 40 | 6 | 0 | 2 | 41 | 106 | 145 | 2.01e-17 | 79.7 |
| MS.gene31111.t1 | MTR_1g053325 | 75.000 | 44 | 11 | 0 | 2 | 45 | 58 | 101 | 5.36e-17 | 77.0 |
| MS.gene31111.t1 | MTR_2g026830 | 77.273 | 44 | 6 | 1 | 2 | 45 | 58 | 97 | 7.31e-17 | 76.6 |
| MS.gene31111.t1 | MTR_6g086570 | 84.091 | 44 | 7 | 0 | 2 | 45 | 41 | 84 | 8.65e-13 | 64.3 |
| MS.gene31111.t1 | MTR_3g030520 | 76.923 | 52 | 12 | 0 | 2 | 53 | 232 | 283 | 1.80e-12 | 68.6 |
| MS.gene31111.t1 | MTR_5g061260 | 82.143 | 28 | 5 | 0 | 18 | 45 | 38 | 65 | 2.17e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31111.t1 | AT5G59210 | 63.616 | 437 | 154 | 4 | 68 | 504 | 1 | 432 | 0.0 | 523 |
| MS.gene31111.t1 | AT5G59210 | 62.929 | 437 | 156 | 4 | 68 | 504 | 1 | 431 | 0.0 | 517 |
Find 108 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCGTGTACCTCGTTCTTAA+TGG | 0.224009 | 2.4:-6139780 | None:intergenic |
| TGAGCTAGCTGGTTTAAAAT+TGG | 0.235728 | 2.4:+6136808 | MS.gene31111:CDS |
| ACCTCGTTCTTAATGGATTC+TGG | 0.270163 | 2.4:-6139773 | None:intergenic |
| CATCCTTAAGACGTTTCTTC+AGG | 0.287567 | 2.4:-6136555 | None:intergenic |
| GTTCATTGGTTGTACGATAA+TGG | 0.302872 | 2.4:+6140479 | MS.gene31111:CDS |
| AATTCCCTTCGCCGCCCCTT+TGG | 0.307961 | 2.4:-6133622 | None:intergenic |
| ATTCCCTTCGCCGCCCCTTT+GGG | 0.311102 | 2.4:-6133621 | None:intergenic |
| AGATTGGTTAAAGCCTCTTC+TGG | 0.341562 | 2.4:+6133850 | MS.gene31111:CDS |
| AAAATACGGTGCCATCTCTT+AGG | 0.353053 | 2.4:+6136374 | MS.gene31111:CDS |
| TAGCTAACTGTTCTTGCCCC+TGG | 0.370428 | 2.4:-6136946 | None:intergenic |
| AGAAAATTTACGAGTGGAAC+AGG | 0.374344 | 2.4:+6139739 | MS.gene31111:CDS |
| GATTGTTGTGAAATGATTGA+TGG | 0.383963 | 2.4:+6132841 | None:intergenic |
| TGATAAGCAGTTGCATGATA+TGG | 0.395775 | 2.4:+6138725 | MS.gene31111:CDS |
| CATCTCTTAGGAAAGCTCTC+AGG | 0.408962 | 2.4:+6136386 | MS.gene31111:CDS |
| CAAACGATGGAAATTGATAA+TGG | 0.414063 | 2.4:+6136145 | MS.gene31111:CDS |
| AATTCATATCAAGAGGCAAT+TGG | 0.436621 | 2.4:+6138943 | MS.gene31111:CDS |
| AATGAAGCAAGACAGTTCAT+TGG | 0.436705 | 2.4:+6140465 | MS.gene31111:CDS |
| CGGAAATAGACTCTCCTCTC+AGG | 0.436851 | 2.4:+6134024 | MS.gene31111:CDS |
| GTTCCTTGTGAAATATGTTA+TGG | 0.438463 | 2.4:+6132913 | MS.gene31111:CDS |
| TTTGTTCATGCAGAAGTCTC+AGG | 0.450124 | 2.4:+6137521 | MS.gene31111:intron |
| CTTTCAATGTTGCGCAGCAC+TGG | 0.450610 | 2.4:-6140430 | None:intergenic |
| ATGAGTTGGATGAAGAAAAC+AGG | 0.456410 | 2.4:+6136013 | MS.gene31111:CDS |
| TACCCTGAAGAAACGTCTTA+AGG | 0.456445 | 2.4:+6136552 | MS.gene31111:CDS |
| TGGTCGGGTGGACCAATAGA+TGG | 0.457820 | 2.4:-6136764 | None:intergenic |
| CAGTAGACAGAAACTTCTAA+TGG | 0.462491 | 2.4:+6138773 | MS.gene31111:CDS |
| TGGTTTAAAATTGGAACTAC+AGG | 0.466540 | 2.4:+6136817 | MS.gene31111:CDS |
| AAAACCCAAAGGGGCGGCGA+AGG | 0.466659 | 2.4:+6133617 | MS.gene31111:CDS |
| TGCTCAGTTCCTTCACAAGT+TGG | 0.467221 | 2.4:-6140204 | None:intergenic |
| GTTAGTACAATACCATCTAT+TGG | 0.468879 | 2.4:+6136752 | MS.gene31111:CDS |
| ATCCTTAAGACGTTTCTTCA+GGG | 0.470102 | 2.4:-6136554 | None:intergenic |
| TGAGTCACTGATGAGGCACC+AGG | 0.470593 | 2.4:+6136928 | MS.gene31111:CDS |
| GTCGGAACCTGGCTTAGATC+TGG | 0.480545 | 2.4:-6133874 | None:intergenic |
| AAAGAGAGCACAGGATAGAT+TGG | 0.482201 | 2.4:+6133834 | MS.gene31111:CDS |
| GTTGGTTCCTCGACATCTAC+AGG | 0.485383 | 2.4:+6139803 | MS.gene31111:CDS |
| GCACAAGCAGTTGAATGAAC+TGG | 0.485805 | 2.4:+6136174 | MS.gene31111:CDS |
| GAAATGATTGATGGCATTGA+AGG | 0.489203 | 2.4:+6132850 | None:intergenic |
| ATTCCTGCAGGAGCAAAATA+CGG | 0.491385 | 2.4:+6136360 | MS.gene31111:intron |
| GACCGGGGATGGTCGGAACC+TGG | 0.491726 | 2.4:-6133885 | None:intergenic |
| AATTGGAGCAGCAGCAAGAT+GGG | 0.496142 | 2.4:+6138960 | MS.gene31111:CDS |
| AACTCAGAAGACATTCACTA+TGG | 0.497995 | 2.4:+6137550 | MS.gene31111:CDS |
| CCTCCATTGTTACCCACGAC+GGG | 0.500866 | 2.4:-6133666 | None:intergenic |
| AATATTTGAAGATGGTGGTC+GGG | 0.503219 | 2.4:-6136779 | None:intergenic |
| GGCGTTAGCTGTAGAGAGGT+TGG | 0.514417 | 2.4:+6138746 | MS.gene31111:CDS |
| GGAGAGTCTATTTCCGCTCT+CGG | 0.515784 | 2.4:-6134017 | None:intergenic |
| GATGTCTGAAAAGCAAGAGT+TGG | 0.521117 | 2.4:+6136994 | MS.gene31111:CDS |
| CAATTGGAGCAGCAGCAAGA+TGG | 0.521758 | 2.4:+6138959 | MS.gene31111:CDS |
| GGGTACGAAGCTGCGCTGAA+AGG | 0.526422 | 2.4:-6136534 | None:intergenic |
| AGCCAGGTTCCGACCATCCC+CGG | 0.526801 | 2.4:+6133883 | MS.gene31111:CDS |
| AATGGATTCTGGTAAGCCAT+TGG | 0.528969 | 2.4:-6139762 | None:intergenic |
| AACAAAATGAAGAGCTGCGT+GGG | 0.529017 | 2.4:+6139711 | MS.gene31111:CDS |
| CAAGTCAAACAAGCATATGA+TGG | 0.532289 | 2.4:+6140277 | MS.gene31111:CDS |
| GCAAAGGAAGAACAATGAGT+TGG | 0.533565 | 2.4:+6135999 | MS.gene31111:CDS |
| TAATACTGACCGGGGATGGT+CGG | 0.536470 | 2.4:-6133892 | None:intergenic |
| TAATATTTGAAGATGGTGGT+CGG | 0.537953 | 2.4:-6136780 | None:intergenic |
| ATATTAGAAAATGAGCTAGC+TGG | 0.539429 | 2.4:+6136797 | MS.gene31111:CDS |
| CTCAAATAAAAGTTCTGCAA+AGG | 0.540173 | 2.4:+6135983 | MS.gene31111:CDS |
| GAGGCTCGTCATGCATCTCT+AGG | 0.542218 | 2.4:+6133685 | MS.gene31111:CDS |
| ATCTCTTAGGAAAGCTCTCA+GGG | 0.542321 | 2.4:+6136387 | MS.gene31111:CDS |
| AGTTGTAAAATCTACTATGA+AGG | 0.542921 | 2.4:+6132937 | MS.gene31111:CDS |
| TTTCTAATATTTGAAGATGG+TGG | 0.548198 | 2.4:-6136784 | None:intergenic |
| AGCAGCAAGATGGGAAAACC+AGG | 0.551181 | 2.4:+6138969 | MS.gene31111:CDS |
| AAACCCAAAGGGGCGGCGAA+GGG | 0.551283 | 2.4:+6133618 | MS.gene31111:CDS |
| TCTCTCAAATTCATATCAAG+AGG | 0.556927 | 2.4:+6138936 | MS.gene31111:CDS |
| TTCTGGACCAGATCTAAGCC+AGG | 0.557069 | 2.4:+6133867 | MS.gene31111:CDS |
| AGGAGAGGTGGCATCTCTGA+AGG | 0.562380 | 2.4:+6139823 | MS.gene31111:CDS |
| AGCTCTCAGGGATGTTGCAA+TGG | 0.563071 | 2.4:+6136399 | MS.gene31111:CDS |
| GCGATAATACTGACCGGGGA+TGG | 0.566783 | 2.4:-6133896 | None:intergenic |
| CTGAGAGCTTTCCTAAGAGA+TGG | 0.567214 | 2.4:-6136385 | None:intergenic |
| GTGCTGCGCAACATTGAAAG+TGG | 0.568193 | 2.4:+6140433 | MS.gene31111:CDS |
| TTGGCAGGGCCAACTTGTGA+AGG | 0.574471 | 2.4:+6140195 | MS.gene31111:intron |
| ACCTGCAGCCTCTCTTGACA+TGG | 0.574630 | 2.4:-6137032 | None:intergenic |
| ACGTCTTAAGGATGCTGAAG+AGG | 0.580391 | 2.4:+6136564 | MS.gene31111:CDS |
| AAACAGGAAAATAACTTCGA+AGG | 0.586204 | 2.4:+6136029 | MS.gene31111:CDS |
| GATGGCATTGAAGGAGATGA+TGG | 0.588143 | 2.4:+6132859 | MS.gene31111:CDS |
| AAGAACGAGGTACACGAGGT+TGG | 0.590666 | 2.4:+6139785 | MS.gene31111:CDS |
| TTACGAGTGGAACAGGCCAA+TGG | 0.597057 | 2.4:+6139746 | MS.gene31111:CDS |
| CGAAGAAAATGATAATTGTG+AGG | 0.597287 | 2.4:+6132966 | MS.gene31111:CDS |
| AATTCGTCAAAAGAGAGCAC+AGG | 0.597702 | 2.4:+6133825 | MS.gene31111:CDS |
| ATTTGAAGATGGTGGTCGGG+TGG | 0.600067 | 2.4:-6136776 | None:intergenic |
| GCTTAGATCTGGTCCAGAAG+AGG | 0.601055 | 2.4:-6133863 | None:intergenic |
| ATTAAACTCCATGTCAAGAG+AGG | 0.604029 | 2.4:+6137024 | MS.gene31111:CDS |
| CTTCCATAACATATTTCACA+AGG | 0.605042 | 2.4:-6132916 | None:intergenic |
| GGCATTGAAGGAGATGATGG+TGG | 0.606102 | 2.4:+6132862 | MS.gene31111:CDS |
| CTCGACATCTACAGGAGAGG+TGG | 0.609171 | 2.4:+6139811 | MS.gene31111:CDS |
| CACCTCTCCTGTAGATGTCG+AGG | 0.610163 | 2.4:-6139810 | None:intergenic |
| CCCGTCGTGGGTAACAATGG+AGG | 0.617638 | 2.4:+6133666 | MS.gene31111:CDS |
| ATTGTTGCAGCTTCAAACGA+TGG | 0.618151 | 2.4:+6136132 | MS.gene31111:intron |
| GAGGGTAGACGTTACCTGAG+AGG | 0.624339 | 2.4:-6134038 | None:intergenic |
| CTCCATTGTTACCCACGACG+GGG | 0.625665 | 2.4:-6133665 | None:intergenic |
| GCCTCCATTGTTACCCACGA+CGG | 0.628775 | 2.4:-6133667 | None:intergenic |
| GAAGGAACTGAGCAGAGCAG+AGG | 0.632473 | 2.4:+6140213 | MS.gene31111:CDS |
| GAGTCACTGATGAGGCACCA+GGG | 0.634929 | 2.4:+6136929 | MS.gene31111:CDS |
| AGTCACTGATGAGGCACCAG+GGG | 0.636835 | 2.4:+6136930 | MS.gene31111:CDS |
| AGGAGATGATGGTGGATGTG+AGG | 0.652564 | 2.4:+6132870 | MS.gene31111:CDS |
| GATGGTGGATGTGAGGCTTG+TGG | 0.653395 | 2.4:+6132877 | MS.gene31111:CDS |
| TGCATCTCTAGGTCGACGAA+CGG | 0.654276 | 2.4:+6133696 | MS.gene31111:CDS |
| CATTAAGAACGAGGTACACG+AGG | 0.655744 | 2.4:+6139781 | MS.gene31111:CDS |
| GATTCTAGAAAATTTACGAG+TGG | 0.655925 | 2.4:+6139733 | MS.gene31111:CDS |
| TAGACAGAAACTTCTAATGG+AGG | 0.657126 | 2.4:+6138776 | MS.gene31111:CDS |
| AAACAAAATGAAGAGCTGCG+TGG | 0.659442 | 2.4:+6139710 | MS.gene31111:CDS |
| TCCATGTCAAGAGAGGCTGC+AGG | 0.662258 | 2.4:+6137031 | MS.gene31111:CDS |
| TCCATTGTTACCCACGACGG+GGG | 0.669445 | 2.4:-6133664 | None:intergenic |
| GGAATGAGCAAGTCCGAGAG+CGG | 0.669655 | 2.4:+6134004 | MS.gene31111:CDS |
| CAGACATCAGTGATGCAATG+CGG | 0.670305 | 2.4:-6136979 | None:intergenic |
| TTCCTCGACATCTACAGGAG+AGG | 0.677582 | 2.4:+6139808 | MS.gene31111:CDS |
| ATATGGCGTTAGCTGTAGAG+AGG | 0.679585 | 2.4:+6138742 | MS.gene31111:CDS |
| ACCAGAATCCATTAAGAACG+AGG | 0.708984 | 2.4:+6139772 | MS.gene31111:CDS |
| TACAGCGTGAGTCACTGATG+AGG | 0.718845 | 2.4:+6136921 | MS.gene31111:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 6132853 | 6140498 | 6132853 | ID=MS.gene31111 |
| chr2.4 | mRNA | 6132853 | 6140498 | 6132853 | ID=MS.gene31111.t1;Parent=MS.gene31111 |
| chr2.4 | exon | 6132853 | 6132987 | 6132853 | ID=MS.gene31111.t1.exon1;Parent=MS.gene31111.t1 |
| chr2.4 | CDS | 6132853 | 6132987 | 6132853 | ID=cds.MS.gene31111.t1;Parent=MS.gene31111.t1 |
| chr2.4 | exon | 6133616 | 6133717 | 6133616 | ID=MS.gene31111.t1.exon2;Parent=MS.gene31111.t1 |
| chr2.4 | CDS | 6133616 | 6133717 | 6133616 | ID=cds.MS.gene31111.t1;Parent=MS.gene31111.t1 |
| chr2.4 | exon | 6133817 | 6133904 | 6133817 | ID=MS.gene31111.t1.exon3;Parent=MS.gene31111.t1 |
| chr2.4 | CDS | 6133817 | 6133904 | 6133817 | ID=cds.MS.gene31111.t1;Parent=MS.gene31111.t1 |
| chr2.4 | exon | 6133996 | 6134045 | 6133996 | ID=MS.gene31111.t1.exon4;Parent=MS.gene31111.t1 |
| chr2.4 | CDS | 6133996 | 6134045 | 6133996 | ID=cds.MS.gene31111.t1;Parent=MS.gene31111.t1 |
| chr2.4 | exon | 6135961 | 6136050 | 6135961 | ID=MS.gene31111.t1.exon5;Parent=MS.gene31111.t1 |
| chr2.4 | CDS | 6135961 | 6136050 | 6135961 | ID=cds.MS.gene31111.t1;Parent=MS.gene31111.t1 |
| chr2.4 | exon | 6136142 | 6136195 | 6136142 | ID=MS.gene31111.t1.exon6;Parent=MS.gene31111.t1 |
| chr2.4 | CDS | 6136142 | 6136195 | 6136142 | ID=cds.MS.gene31111.t1;Parent=MS.gene31111.t1 |
| chr2.4 | exon | 6136370 | 6136447 | 6136370 | ID=MS.gene31111.t1.exon7;Parent=MS.gene31111.t1 |
| chr2.4 | CDS | 6136370 | 6136447 | 6136370 | ID=cds.MS.gene31111.t1;Parent=MS.gene31111.t1 |
| chr2.4 | exon | 6136529 | 6136597 | 6136529 | ID=MS.gene31111.t1.exon8;Parent=MS.gene31111.t1 |
| chr2.4 | CDS | 6136529 | 6136597 | 6136529 | ID=cds.MS.gene31111.t1;Parent=MS.gene31111.t1 |
| chr2.4 | exon | 6136683 | 6136838 | 6136683 | ID=MS.gene31111.t1.exon9;Parent=MS.gene31111.t1 |
| chr2.4 | CDS | 6136683 | 6136838 | 6136683 | ID=cds.MS.gene31111.t1;Parent=MS.gene31111.t1 |
| chr2.4 | exon | 6136926 | 6137052 | 6136926 | ID=MS.gene31111.t1.exon10;Parent=MS.gene31111.t1 |
| chr2.4 | CDS | 6136926 | 6137052 | 6136926 | ID=cds.MS.gene31111.t1;Parent=MS.gene31111.t1 |
| chr2.4 | exon | 6137534 | 6137571 | 6137534 | ID=MS.gene31111.t1.exon11;Parent=MS.gene31111.t1 |
| chr2.4 | CDS | 6137534 | 6137571 | 6137534 | ID=cds.MS.gene31111.t1;Parent=MS.gene31111.t1 |
| chr2.4 | exon | 6138708 | 6138797 | 6138708 | ID=MS.gene31111.t1.exon12;Parent=MS.gene31111.t1 |
| chr2.4 | CDS | 6138708 | 6138797 | 6138708 | ID=cds.MS.gene31111.t1;Parent=MS.gene31111.t1 |
| chr2.4 | exon | 6138886 | 6138990 | 6138886 | ID=MS.gene31111.t1.exon13;Parent=MS.gene31111.t1 |
| chr2.4 | CDS | 6138886 | 6138990 | 6138886 | ID=cds.MS.gene31111.t1;Parent=MS.gene31111.t1 |
| chr2.4 | exon | 6139695 | 6139844 | 6139695 | ID=MS.gene31111.t1.exon14;Parent=MS.gene31111.t1 |
| chr2.4 | CDS | 6139695 | 6139844 | 6139695 | ID=cds.MS.gene31111.t1;Parent=MS.gene31111.t1 |
| chr2.4 | exon | 6140202 | 6140311 | 6140202 | ID=MS.gene31111.t1.exon15;Parent=MS.gene31111.t1 |
| chr2.4 | CDS | 6140202 | 6140311 | 6140202 | ID=cds.MS.gene31111.t1;Parent=MS.gene31111.t1 |
| chr2.4 | exon | 6140423 | 6140498 | 6140423 | ID=MS.gene31111.t1.exon16;Parent=MS.gene31111.t1 |
| chr2.4 | CDS | 6140423 | 6140498 | 6140423 | ID=cds.MS.gene31111.t1;Parent=MS.gene31111.t1 |
| Gene Sequence |
| Protein sequence |
