Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45537.t1 | XP_003597408.1 | 96.1 | 413 | 16 | 0 | 97 | 509 | 1 | 413 | 2.00E-201 | 712.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45537.t1 | Q9FLE8 | 55.9 | 68 | 29 | 1 | 2 | 68 | 296 | 363 | 4.9e-15 | 84.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45537.t1 | Q2HS23 | 96.1 | 413 | 16 | 0 | 97 | 509 | 1 | 413 | 1.4e-201 | 712.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene45537 | 0.82302 | 1.73E-53 | -1.69E-46 |
| MS.gene04918 | MS.gene45537 | 0.805981 | 1.03E-49 | -1.69E-46 |
| MS.gene04919 | MS.gene45537 | 0.820061 | 8.37E-53 | -1.69E-46 |
| MS.gene04920 | MS.gene45537 | 0.816526 | 5.29E-52 | -1.69E-46 |
| MS.gene049283 | MS.gene45537 | 0.824046 | 9.98E-54 | -1.69E-46 |
| MS.gene049350 | MS.gene45537 | 0.812837 | 3.47E-51 | -1.69E-46 |
| MS.gene049368 | MS.gene45537 | 0.825305 | 5.04E-54 | -1.69E-46 |
| MS.gene049411 | MS.gene45537 | 0.832425 | 9.52E-56 | -1.69E-46 |
| MS.gene049499 | MS.gene45537 | 0.839676 | 1.37E-57 | -1.69E-46 |
| MS.gene049807 | MS.gene45537 | 0.809278 | 2.05E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene45537 | 0.81385 | 2.08E-51 | -1.69E-46 |
| MS.gene050084 | MS.gene45537 | 0.833709 | 4.56E-56 | -1.69E-46 |
| MS.gene050085 | MS.gene45537 | 0.853564 | 2.20E-61 | -1.69E-46 |
| MS.gene050359 | MS.gene45537 | 0.806546 | 7.80E-50 | -1.69E-46 |
| MS.gene050384 | MS.gene45537 | 0.803487 | 3.41E-49 | -1.69E-46 |
| MS.gene050386 | MS.gene45537 | 0.800784 | 1.23E-48 | -1.69E-46 |
| MS.gene050414 | MS.gene45537 | 0.821397 | 4.13E-53 | -1.69E-46 |
| MS.gene050551 | MS.gene45537 | 0.830021 | 3.71E-55 | -1.69E-46 |
| MS.gene050646 | MS.gene45537 | 0.851335 | 9.49E-61 | -1.69E-46 |
| MS.gene050654 | MS.gene45537 | 0.82137 | 4.19E-53 | -1.69E-46 |
| MS.gene050689 | MS.gene45537 | 0.845733 | 3.38E-59 | -1.69E-46 |
| MS.gene050752 | MS.gene45537 | 0.802348 | 5.85E-49 | -1.69E-46 |
| MS.gene050838 | MS.gene45537 | 0.823317 | 1.48E-53 | -1.69E-46 |
| MS.gene050931 | MS.gene45537 | 0.835978 | 1.22E-56 | -1.69E-46 |
| MS.gene050945 | MS.gene45537 | 0.853534 | 2.24E-61 | -1.69E-46 |
| MS.gene051003 | MS.gene45537 | 0.835049 | 2.10E-56 | -1.69E-46 |
| MS.gene051043 | MS.gene45537 | 0.813168 | 2.93E-51 | -1.69E-46 |
| MS.gene051233 | MS.gene45537 | 0.821481 | 3.95E-53 | -1.69E-46 |
| MS.gene051234 | MS.gene45537 | 0.855428 | 6.35E-62 | -1.69E-46 |
| MS.gene051343 | MS.gene45537 | 0.844175 | 8.90E-59 | -1.69E-46 |
| MS.gene051363 | MS.gene45537 | 0.803706 | 3.07E-49 | -1.69E-46 |
| MS.gene051365 | MS.gene45537 | 0.831656 | 1.48E-55 | -1.69E-46 |
| MS.gene051381 | MS.gene45537 | 0.823031 | 1.72E-53 | -1.69E-46 |
| MS.gene051642 | MS.gene45537 | 0.820959 | 5.21E-53 | -1.69E-46 |
| MS.gene051676 | MS.gene45537 | 0.829404 | 5.25E-55 | -1.69E-46 |
| MS.gene051856 | MS.gene45537 | 0.809608 | 1.74E-50 | -1.69E-46 |
| MS.gene051902 | MS.gene45537 | 0.842395 | 2.65E-58 | -1.69E-46 |
| MS.gene051975 | MS.gene45537 | 0.810047 | 1.40E-50 | -1.69E-46 |
| MS.gene052072 | MS.gene45537 | 0.942018 | 1.51E-101 | -1.69E-46 |
| MS.gene052242 | MS.gene45537 | -0.805675 | 1.19E-49 | -1.69E-46 |
| MS.gene052296 | MS.gene45537 | 0.820505 | 6.62E-53 | -1.69E-46 |
| MS.gene052307 | MS.gene45537 | 0.871044 | 9.22E-67 | -1.69E-46 |
| MS.gene052335 | MS.gene45537 | 0.802884 | 4.54E-49 | -1.69E-46 |
| MS.gene052342 | MS.gene45537 | 0.800066 | 1.72E-48 | -1.69E-46 |
| MS.gene052518 | MS.gene45537 | 0.805478 | 1.31E-49 | -1.69E-46 |
| MS.gene052533 | MS.gene45537 | 0.836483 | 9.11E-57 | -1.69E-46 |
| MS.gene052609 | MS.gene45537 | 0.865441 | 5.89E-65 | -1.69E-46 |
| MS.gene052793 | MS.gene45537 | 0.809275 | 2.05E-50 | -1.69E-46 |
| MS.gene052932 | MS.gene45537 | 0.807695 | 4.46E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene45537 | 0.834803 | 2.43E-56 | -1.69E-46 |
| MS.gene053143 | MS.gene45537 | 0.833322 | 5.70E-56 | -1.69E-46 |
| MS.gene053456 | MS.gene45537 | 0.801529 | 8.62E-49 | -1.69E-46 |
| MS.gene053542 | MS.gene45537 | 0.814049 | 1.88E-51 | -1.69E-46 |
| MS.gene05364 | MS.gene45537 | 0.830178 | 3.40E-55 | -1.69E-46 |
| MS.gene054004 | MS.gene45537 | 0.845649 | 3.56E-59 | -1.69E-46 |
| MS.gene054178 | MS.gene45537 | 0.803183 | 3.94E-49 | -1.69E-46 |
| MS.gene054403 | MS.gene45537 | 0.801816 | 7.53E-49 | -1.69E-46 |
| MS.gene054413 | MS.gene45537 | 0.823745 | 1.17E-53 | -1.69E-46 |
| MS.gene05458 | MS.gene45537 | 0.808457 | 3.07E-50 | -1.69E-46 |
| MS.gene054709 | MS.gene45537 | 0.819799 | 9.60E-53 | -1.69E-46 |
| MS.gene055513 | MS.gene45537 | 0.83408 | 3.68E-56 | -1.69E-46 |
| MS.gene056045 | MS.gene45537 | 0.808773 | 2.63E-50 | -1.69E-46 |
| MS.gene056097 | MS.gene45537 | 0.800224 | 1.59E-48 | -1.69E-46 |
| MS.gene056181 | MS.gene45537 | 0.851168 | 1.06E-60 | -1.69E-46 |
| MS.gene056578 | MS.gene45537 | 0.8494 | 3.31E-60 | -1.69E-46 |
| MS.gene056699 | MS.gene45537 | 0.807691 | 4.47E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene45537 | 0.8045 | 2.10E-49 | -1.69E-46 |
| MS.gene056881 | MS.gene45537 | 0.814597 | 1.42E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene45537 | 0.847519 | 1.10E-59 | -1.69E-46 |
| MS.gene05781 | MS.gene45537 | 0.805817 | 1.11E-49 | -1.69E-46 |
| MS.gene058008 | MS.gene45537 | 0.820418 | 6.93E-53 | -1.69E-46 |
| MS.gene058054 | MS.gene45537 | 0.821962 | 3.05E-53 | -1.69E-46 |
| MS.gene058149 | MS.gene45537 | 0.809463 | 1.87E-50 | -1.69E-46 |
| MS.gene058292 | MS.gene45537 | 0.839206 | 1.82E-57 | -1.69E-46 |
| MS.gene058330 | MS.gene45537 | 0.808897 | 2.47E-50 | -1.69E-46 |
| MS.gene058592 | MS.gene45537 | 0.801874 | 7.33E-49 | -1.69E-46 |
| MS.gene058781 | MS.gene45537 | 0.818372 | 2.03E-52 | -1.69E-46 |
| MS.gene058852 | MS.gene45537 | 0.805198 | 1.50E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene45537 | 0.860183 | 2.47E-63 | -1.69E-46 |
| MS.gene059171 | MS.gene45537 | 0.822195 | 2.70E-53 | -1.69E-46 |
| MS.gene059227 | MS.gene45537 | 0.802136 | 6.47E-49 | -1.69E-46 |
| MS.gene059778 | MS.gene45537 | 0.839247 | 1.78E-57 | -1.69E-46 |
| MS.gene05985 | MS.gene45537 | -0.81294 | 3.29E-51 | -1.69E-46 |
| MS.gene060244 | MS.gene45537 | 0.826116 | 3.24E-54 | -1.69E-46 |
| MS.gene060365 | MS.gene45537 | 0.808178 | 3.52E-50 | -1.69E-46 |
| MS.gene060424 | MS.gene45537 | 0.807598 | 4.67E-50 | -1.69E-46 |
| MS.gene060763 | MS.gene45537 | 0.853119 | 2.95E-61 | -1.69E-46 |
| MS.gene060933 | MS.gene45537 | 0.887015 | 2.07E-72 | -1.69E-46 |
| MS.gene060935 | MS.gene45537 | 0.865054 | 7.80E-65 | -1.69E-46 |
| MS.gene060937 | MS.gene45537 | 0.882051 | 1.44E-70 | -1.69E-46 |
| MS.gene061100 | MS.gene45537 | 0.871247 | 7.90E-67 | -1.69E-46 |
| MS.gene061160 | MS.gene45537 | 0.819826 | 9.47E-53 | -1.69E-46 |
| MS.gene061188 | MS.gene45537 | 0.800375 | 1.48E-48 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45537.t1 | MTR_2g097780 | 95.433 | 416 | 19 | 0 | 97 | 512 | 1 | 416 | 0.0 | 788 |
| MS.gene45537.t1 | MTR_7g079015 | 87.324 | 71 | 9 | 0 | 3 | 73 | 31 | 101 | 1.26e-39 | 140 |
| MS.gene45537.t1 | MTR_1g095960 | 85.915 | 71 | 10 | 0 | 3 | 73 | 58 | 128 | 3.25e-38 | 137 |
| MS.gene45537.t1 | MTR_1g098230 | 83.099 | 71 | 12 | 0 | 3 | 73 | 31 | 101 | 4.29e-37 | 133 |
| MS.gene45537.t1 | MTR_5g065050 | 81.690 | 71 | 13 | 0 | 3 | 73 | 31 | 101 | 1.14e-35 | 129 |
| MS.gene45537.t1 | MTR_6g011640 | 85.915 | 71 | 10 | 0 | 3 | 73 | 303 | 373 | 2.46e-35 | 137 |
| MS.gene45537.t1 | MTR_2g436640 | 84.507 | 71 | 11 | 0 | 3 | 73 | 60 | 130 | 1.48e-34 | 129 |
| MS.gene45537.t1 | MTR_5g088530 | 81.690 | 71 | 12 | 1 | 3 | 73 | 38 | 107 | 1.09e-33 | 124 |
| MS.gene45537.t1 | MTR_1g053325 | 80.282 | 71 | 14 | 0 | 3 | 73 | 31 | 101 | 3.33e-33 | 122 |
| MS.gene45537.t1 | MTR_7g078370 | 82.090 | 67 | 12 | 0 | 3 | 69 | 79 | 145 | 1.40e-31 | 120 |
| MS.gene45537.t1 | MTR_2g028040 | 83.333 | 72 | 11 | 1 | 3 | 73 | 31 | 102 | 2.96e-30 | 122 |
| MS.gene45537.t1 | MTR_2g028040 | 80.303 | 66 | 13 | 0 | 8 | 73 | 290 | 355 | 2.22e-26 | 111 |
| MS.gene45537.t1 | MTR_2g028040 | 77.778 | 63 | 14 | 0 | 11 | 73 | 227 | 289 | 2.78e-23 | 102 |
| MS.gene45537.t1 | MTR_2g028040 | 82.258 | 62 | 11 | 0 | 12 | 73 | 167 | 228 | 1.20e-15 | 79.3 |
| MS.gene45537.t1 | MTR_2g028040 | 77.419 | 62 | 14 | 0 | 5 | 66 | 103 | 164 | 8.66e-14 | 73.6 |
| MS.gene45537.t1 | MTR_2g026830 | 76.056 | 71 | 13 | 1 | 3 | 73 | 31 | 97 | 4.88e-30 | 114 |
| MS.gene45537.t1 | MTR_2g097770 | 92.000 | 75 | 6 | 0 | 511 | 585 | 12 | 86 | 1.66e-29 | 112 |
| MS.gene45537.t1 | MTR_6g042350 | 72.581 | 62 | 17 | 0 | 12 | 73 | 25 | 86 | 3.07e-27 | 106 |
| MS.gene45537.t1 | MTR_3g030520 | 85.915 | 71 | 10 | 0 | 3 | 73 | 205 | 275 | 8.65e-27 | 111 |
| MS.gene45537.t1 | MTR_6g086570 | 86.364 | 66 | 9 | 0 | 8 | 73 | 19 | 84 | 2.70e-26 | 103 |
| MS.gene45537.t1 | MTR_5g064740 | 70.000 | 70 | 9 | 1 | 3 | 72 | 31 | 88 | 9.26e-24 | 95.9 |
| MS.gene45537.t1 | MTR_5g061260 | 76.562 | 64 | 15 | 0 | 10 | 73 | 2 | 65 | 4.08e-20 | 85.1 |
| MS.gene45537.t1 | MTR_4g059510 | 75.758 | 66 | 16 | 0 | 8 | 73 | 69 | 134 | 4.80e-20 | 87.0 |
| MS.gene45537.t1 | MTR_4g109990 | 84.615 | 39 | 6 | 0 | 35 | 73 | 35 | 73 | 4.78e-19 | 82.4 |
| MS.gene45537.t1 | MTR_5g031560 | 79.592 | 49 | 10 | 0 | 3 | 51 | 31 | 79 | 1.25e-18 | 81.6 |
| MS.gene45537.t1 | MTR_7g010090 | 70.175 | 57 | 14 | 1 | 4 | 60 | 337 | 390 | 2.58e-18 | 88.2 |
| MS.gene45537.t1 | MTR_7g086680 | 79.592 | 49 | 7 | 1 | 3 | 51 | 31 | 76 | 6.48e-17 | 75.9 |
| MS.gene45537.t1 | MTR_1g073880 | 78.261 | 46 | 6 | 1 | 3 | 44 | 31 | 76 | 1.04e-15 | 72.8 |
| MS.gene45537.t1 | MTR_4g088575 | 85.714 | 35 | 5 | 0 | 3 | 37 | 35 | 69 | 3.35e-14 | 68.6 |
| MS.gene45537.t1 | MTR_0140s0020 | 93.103 | 29 | 2 | 0 | 3 | 31 | 31 | 59 | 1.75e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45537.t1 | AT5G59210 | 63.221 | 416 | 148 | 4 | 97 | 512 | 1 | 411 | 7.28e-170 | 490 |
| MS.gene45537.t1 | AT5G59210 | 62.500 | 416 | 150 | 4 | 97 | 512 | 1 | 410 | 1.13e-167 | 484 |
| MS.gene45537.t1 | AT5G39865 | 55.882 | 68 | 29 | 1 | 2 | 68 | 296 | 363 | 6.66e-16 | 80.5 |
| MS.gene45537.t1 | AT3G28850 | 57.627 | 59 | 24 | 1 | 3 | 60 | 323 | 381 | 1.05e-13 | 73.9 |
Find 126 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCGTGTACCTCGTTCTTAA+TGG | 0.224009 | 2.1:-6379250 | None:intergenic |
| TGAGCTAGCTGGTTTAAAAT+TGG | 0.235728 | 2.1:+6376278 | MS.gene45537:CDS |
| ACCTCGTTCTTAATGGATTC+TGG | 0.270163 | 2.1:-6379243 | None:intergenic |
| CATCCTTAAGACGTTTCTTC+AGG | 0.287567 | 2.1:-6376025 | None:intergenic |
| AATTCCCTTCGCCGCCCCTT+TGG | 0.298962 | 2.1:-6373095 | None:intergenic |
| ATTCCCTTCGCCGCCCCTTT+GGG | 0.302195 | 2.1:-6373094 | None:intergenic |
| AGTGGTCATGGTGGTGAATC+TGG | 0.313918 | 2.1:+6381532 | MS.gene45537:CDS |
| AGATTGGTTAAAGCCTCTTC+TGG | 0.341562 | 2.1:+6373322 | MS.gene45537:CDS |
| AAAATACGGTGCCATCTCTT+AGG | 0.353053 | 2.1:+6375844 | MS.gene45537:CDS |
| TAGCTAACTGTTCTTGCCCC+TGG | 0.370428 | 2.1:-6376416 | None:intergenic |
| ATTAAGCCAAAGAAATATAT+TGG | 0.383897 | 2.1:+6370804 | MS.gene45537:intron |
| TGATAAGCAGTTGCATGATA+TGG | 0.395775 | 2.1:+6378195 | MS.gene45537:CDS |
| CATCTCTTAGGAAAGCTCTC+AGG | 0.408962 | 2.1:+6375856 | MS.gene45537:CDS |
| CAAACGATGGAAATTGATAA+TGG | 0.414063 | 2.1:+6375615 | MS.gene45537:CDS |
| GCCACGGTGACTGCAGCTCA+TGG | 0.419297 | 2.1:+6381487 | MS.gene45537:CDS |
| GGCTCCATGAACATTGTTGC+CGG | 0.431578 | 2.1:-6381425 | None:intergenic |
| AATTCATATCAAGAGGCAAT+TGG | 0.436621 | 2.1:+6378413 | MS.gene45537:CDS |
| CGGAAATAGACTCTCCTCTC+AGG | 0.436851 | 2.1:+6373496 | MS.gene45537:CDS |
| GATGGTGGATGTGAGGCTTC+TGG | 0.438807 | 2.1:+6370918 | MS.gene45537:CDS |
| TTTGTTCATGCAGAAGTCTC+AGG | 0.450124 | 2.1:+6376991 | MS.gene45537:intron |
| ATGAGTTGGATGAAGAAAAC+AGG | 0.456410 | 2.1:+6375483 | MS.gene45537:CDS |
| TACCCTGAAGAAACGTCTTA+AGG | 0.456445 | 2.1:+6376022 | MS.gene45537:CDS |
| TGGTCGGGTGGACCAATAGA+TGG | 0.457820 | 2.1:-6376234 | None:intergenic |
| CAGTAGACAGAAACTTCTAA+TGG | 0.462491 | 2.1:+6378243 | MS.gene45537:CDS |
| TGGTTTAAAATTGGAACTAC+AGG | 0.466540 | 2.1:+6376287 | MS.gene45537:CDS |
| AAAACCCAAAGGGGCGGCGA+AGG | 0.466659 | 2.1:+6373090 | MS.gene45537:CDS |
| TGCTCAGTTCCTTCACAAGT+TGG | 0.467221 | 2.1:-6379674 | None:intergenic |
| GTTAGTACAATACCATCTAT+TGG | 0.468879 | 2.1:+6376222 | MS.gene45537:CDS |
| ATCCTTAAGACGTTTCTTCA+GGG | 0.470102 | 2.1:-6376024 | None:intergenic |
| TGAGTCACTGATGAGGCACC+AGG | 0.470593 | 2.1:+6376398 | MS.gene45537:CDS |
| GTCGGAACCTGGCTTAGATC+TGG | 0.480545 | 2.1:-6373346 | None:intergenic |
| AAAGAGAGCACAGGATAGAT+TGG | 0.482201 | 2.1:+6373306 | MS.gene45537:CDS |
| GTTGGTTCCTCGACATCTAC+AGG | 0.485383 | 2.1:+6379273 | MS.gene45537:CDS |
| GCACAAGCAGTTGAATGAAC+TGG | 0.485805 | 2.1:+6375644 | MS.gene45537:CDS |
| ATTCCTGCAGGAGCAAAATA+CGG | 0.491385 | 2.1:+6375830 | MS.gene45537:intron |
| GACCGGGGATGGTCGGAACC+TGG | 0.491726 | 2.1:-6373357 | None:intergenic |
| AATTGGAGCAGCAGCAAGAT+GGG | 0.496142 | 2.1:+6378430 | MS.gene45537:CDS |
| CTTGTGACTAGGCTTGCCAT+TGG | 0.496655 | 2.1:-6381356 | None:intergenic |
| AACTCAGAAGACATTCACTA+TGG | 0.497995 | 2.1:+6377020 | MS.gene45537:CDS |
| AATATTTGAAGATGGTGGTC+GGG | 0.503219 | 2.1:-6376249 | None:intergenic |
| TCTCCATTGTTACCCACGAC+GGG | 0.506592 | 2.1:-6373138 | None:intergenic |
| CCACGGTGACTGCAGCTCAT+GGG | 0.506676 | 2.1:+6381488 | MS.gene45537:CDS |
| CATGGTGGTGAATCTGGTGG+CGG | 0.513504 | 2.1:+6381538 | MS.gene45537:CDS |
| GGCGTTAGCTGTAGAGAGGT+TGG | 0.514417 | 2.1:+6378216 | MS.gene45537:CDS |
| GAAATATATTGGTGGAGTTG+AGG | 0.514813 | 2.1:+6370815 | MS.gene45537:intron |
| GGAGAGTCTATTTCCGCTCT+CGG | 0.515784 | 2.1:-6373489 | None:intergenic |
| GATGTCTGAAAAGCAAGAGT+TGG | 0.521117 | 2.1:+6376464 | MS.gene45537:CDS |
| CAATTGGAGCAGCAGCAAGA+TGG | 0.521758 | 2.1:+6378429 | MS.gene45537:CDS |
| GGTGCCGGCAACAATGTTCA+TGG | 0.523279 | 2.1:+6381421 | MS.gene45537:CDS |
| GGGTACGAAGCTGCGCTGAA+AGG | 0.526422 | 2.1:-6376004 | None:intergenic |
| AGCCAGGTTCCGACCATCCC+CGG | 0.526801 | 2.1:+6373355 | MS.gene45537:CDS |
| AATGGATTCTGGTAAGCCAT+TGG | 0.528969 | 2.1:-6379232 | None:intergenic |
| AGCAAAATGAAGAGCTGCGT+GGG | 0.529017 | 2.1:+6379181 | MS.gene45537:CDS |
| CAAGTCAAACAAGCATATGA+TGG | 0.532289 | 2.1:+6379747 | MS.gene45537:CDS |
| GCAAAGGAAGAACAATGAGT+TGG | 0.533565 | 2.1:+6375469 | MS.gene45537:CDS |
| TAATACTGACCGGGGATGGT+CGG | 0.536470 | 2.1:-6373364 | None:intergenic |
| TAATATTTGAAGATGGTGGT+CGG | 0.537953 | 2.1:-6376250 | None:intergenic |
| ATATTAGAAAATGAGCTAGC+TGG | 0.539429 | 2.1:+6376267 | MS.gene45537:CDS |
| GATGACATTGAAGGAGATGA+TGG | 0.540134 | 2.1:+6370900 | MS.gene45537:CDS |
| CTCAAATAAAAGTTCTGCAA+AGG | 0.540173 | 2.1:+6375453 | MS.gene45537:CDS |
| ATCTCTTAGGAAAGCTCTCA+GGG | 0.542321 | 2.1:+6375857 | MS.gene45537:CDS |
| GAGACTCGTCATGCATCTCT+AGG | 0.543289 | 2.1:+6373157 | MS.gene45537:CDS |
| ATGGTGGTGAATCTGGTGGC+GGG | 0.545270 | 2.1:+6381539 | MS.gene45537:CDS |
| TTTCTAATATTTGAAGATGG+TGG | 0.548198 | 2.1:-6376254 | None:intergenic |
| AGCAGCAAGATGGGAAAACC+AGG | 0.551181 | 2.1:+6378439 | MS.gene45537:CDS |
| AAACCCAAAGGGGCGGCGAA+GGG | 0.551283 | 2.1:+6373091 | MS.gene45537:CDS |
| GAAAATGATAATTGTGAGGA+TGG | 0.556801 | 2.1:+6371011 | MS.gene45537:CDS |
| TCTCTCAAATTCATATCAAG+AGG | 0.556927 | 2.1:+6378406 | MS.gene45537:CDS |
| TTCTGGACCAGATCTAAGCC+AGG | 0.557069 | 2.1:+6373339 | MS.gene45537:CDS |
| CAATGGCAAGCCTAGTCACA+AGG | 0.558925 | 2.1:+6381357 | MS.gene45537:CDS |
| AGGAGAGGTGGCATCTCTGA+AGG | 0.562380 | 2.1:+6379293 | MS.gene45537:CDS |
| AGCTCTCAGGGATGTTGCAA+TGG | 0.563071 | 2.1:+6375869 | MS.gene45537:CDS |
| GCGATAATACTGACCGGGGA+TGG | 0.566783 | 2.1:-6373368 | None:intergenic |
| CTGAGAGCTTTCCTAAGAGA+TGG | 0.567214 | 2.1:-6375855 | None:intergenic |
| ACTCATGCTAATGATGGTGC+CGG | 0.572112 | 2.1:+6381406 | MS.gene45537:CDS |
| GAAATGATTGATGACATTGA+AGG | 0.572740 | 2.1:+6370891 | MS.gene45537:CDS |
| TTGGCAGGGCCAACTTGTGA+AGG | 0.574471 | 2.1:+6379665 | MS.gene45537:intron |
| ACCTGCAGCCTCTCTTGACA+TGG | 0.574630 | 2.1:-6376502 | None:intergenic |
| TGCTAGCAATGACGCAGAAG+TGG | 0.577258 | 2.1:+6381456 | MS.gene45537:CDS |
| GTCATTGCTAGCAATCGTAT+AGG | 0.578183 | 2.1:-6381446 | None:intergenic |
| ACGTCTTAAGGATGCTGAAG+AGG | 0.580391 | 2.1:+6376034 | MS.gene45537:CDS |
| AAACAGGAAAATAACTTCGA+AGG | 0.586204 | 2.1:+6375499 | MS.gene45537:CDS |
| AAGAACGAGGTACACGAGGT+TGG | 0.590666 | 2.1:+6379255 | MS.gene45537:CDS |
| AGAAGTGGTTGCTGCTGCCA+CGG | 0.596000 | 2.1:+6381471 | MS.gene45537:CDS |
| AATTCGTCAAAAGAGAGCAC+AGG | 0.597702 | 2.1:+6373297 | MS.gene45537:CDS |
| GGGTCTTTAATGAGTCAAGA+TGG | 0.599729 | 2.1:+6381508 | MS.gene45537:CDS |
| ATTTGAAGATGGTGGTCGGG+TGG | 0.600067 | 2.1:-6376246 | None:intergenic |
| GCTTAGATCTGGTCCAGAAG+AGG | 0.601055 | 2.1:-6373335 | None:intergenic |
| ATTAAACTCCATGTCAAGAG+AGG | 0.604029 | 2.1:+6376494 | MS.gene45537:CDS |
| AAGCCAAAGAAATATATTGG+TGG | 0.606693 | 2.1:+6370807 | MS.gene45537:intron |
| CTCGACATCTACAGGAGAGG+TGG | 0.609171 | 2.1:+6379281 | MS.gene45537:CDS |
| CACCTCTCCTGTAGATGTCG+AGG | 0.610163 | 2.1:-6379280 | None:intergenic |
| TCAACAACTCATGCTAATGA+TGG | 0.613505 | 2.1:+6381400 | MS.gene45537:CDS |
| CTTCCATGACATATTTCACA+AGG | 0.614100 | 2.1:-6370957 | None:intergenic |
| ATTGTTGCAGCTTCAAACGA+TGG | 0.618151 | 2.1:+6375602 | MS.gene45537:intron |
| TTACGAGTGGAACAGGCCAA+TGG | 0.620799 | 2.1:+6379216 | MS.gene45537:CDS |
| GAGGGTAGACGTTACCTGAG+AGG | 0.624339 | 2.1:-6373510 | None:intergenic |
| CTCCATTGTTACCCACGACG+GGG | 0.625665 | 2.1:-6373137 | None:intergenic |
| CCAGAGGAAGGAAAACGAAG+TGG | 0.626595 | 2.1:+6381315 | MS.gene45537:CDS |
| GTTCCTTGTGAAATATGTCA+TGG | 0.627143 | 2.1:+6370954 | MS.gene45537:CDS |
| AGTCAAGATGGTAGTGGTCA+TGG | 0.628626 | 2.1:+6381520 | MS.gene45537:CDS |
| GACATTGAAGGAGATGATGG+TGG | 0.632453 | 2.1:+6370903 | MS.gene45537:CDS |
| GAAGGAACTGAGCAGAGCAG+AGG | 0.632473 | 2.1:+6379683 | MS.gene45537:CDS |
| GTCTCCATTGTTACCCACGA+CGG | 0.632965 | 2.1:-6373139 | None:intergenic |
| GAGTCACTGATGAGGCACCA+GGG | 0.634929 | 2.1:+6376399 | MS.gene45537:CDS |
| AGTCACTGATGAGGCACCAG+GGG | 0.636835 | 2.1:+6376400 | MS.gene45537:CDS |
| AGGAGATGATGGTGGATGTG+AGG | 0.652564 | 2.1:+6370911 | MS.gene45537:CDS |
| TGCATCTCTAGGTCGACGAA+CGG | 0.654276 | 2.1:+6373168 | MS.gene45537:CDS |
| CATTAAGAACGAGGTACACG+AGG | 0.655744 | 2.1:+6379251 | MS.gene45537:CDS |
| TAGACAGAAACTTCTAATGG+AGG | 0.657126 | 2.1:+6378246 | MS.gene45537:CDS |
| AATGGCAAGCCTAGTCACAA+GGG | 0.657771 | 2.1:+6381358 | MS.gene45537:CDS |
| GATTTAGAGAAACTCTCCAA+TGG | 0.659682 | 2.1:+6381340 | MS.gene45537:CDS |
| AAGCAAAATGAAGAGCTGCG+TGG | 0.661738 | 2.1:+6379180 | MS.gene45537:CDS |
| TCCATGTCAAGAGAGGCTGC+AGG | 0.662258 | 2.1:+6376501 | MS.gene45537:CDS |
| TCCATTGTTACCCACGACGG+GGG | 0.669445 | 2.1:-6373136 | None:intergenic |
| GGAATGAGCAAGTCCGAGAG+CGG | 0.669655 | 2.1:+6373476 | MS.gene45537:CDS |
| CAGACATCAGTGATGCAATG+CGG | 0.670305 | 2.1:-6376449 | None:intergenic |
| TGAAGAAAATGATAATTGTG+AGG | 0.674628 | 2.1:+6371007 | MS.gene45537:CDS |
| TTAATGAGTCAAGATGGTAG+TGG | 0.677196 | 2.1:+6381514 | MS.gene45537:CDS |
| TTCCTCGACATCTACAGGAG+AGG | 0.677582 | 2.1:+6379278 | MS.gene45537:CDS |
| ATATGGCGTTAGCTGTAGAG+AGG | 0.679585 | 2.1:+6378212 | MS.gene45537:CDS |
| CCCATGAGCTGCAGTCACCG+TGG | 0.680356 | 2.1:-6381488 | None:intergenic |
| GGTCATGGTGGTGAATCTGG+TGG | 0.683967 | 2.1:+6381535 | MS.gene45537:CDS |
| ACCAGAATCCATTAAGAACG+AGG | 0.708984 | 2.1:+6379242 | MS.gene45537:CDS |
| TACAGCGTGAGTCACTGATG+AGG | 0.718845 | 2.1:+6376391 | MS.gene45537:intron |
| CAAGATGGTAGTGGTCATGG+TGG | 0.744570 | 2.1:+6381523 | MS.gene45537:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 6370308 | 6381564 | 6370308 | ID=MS.gene45537 |
| chr2.1 | mRNA | 6370308 | 6381564 | 6370308 | ID=MS.gene45537.t1;Parent=MS.gene45537 |
| chr2.1 | exon | 6370308 | 6370313 | 6370308 | ID=MS.gene45537.t1.exon1;Parent=MS.gene45537.t1 |
| chr2.1 | CDS | 6370308 | 6370313 | 6370308 | ID=cds.MS.gene45537.t1;Parent=MS.gene45537.t1 |
| chr2.1 | exon | 6370816 | 6371032 | 6370816 | ID=MS.gene45537.t1.exon2;Parent=MS.gene45537.t1 |
| chr2.1 | CDS | 6370816 | 6371032 | 6370816 | ID=cds.MS.gene45537.t1;Parent=MS.gene45537.t1 |
| chr2.1 | exon | 6373089 | 6373189 | 6373089 | ID=MS.gene45537.t1.exon3;Parent=MS.gene45537.t1 |
| chr2.1 | CDS | 6373089 | 6373189 | 6373089 | ID=cds.MS.gene45537.t1;Parent=MS.gene45537.t1 |
| chr2.1 | exon | 6373289 | 6373376 | 6373289 | ID=MS.gene45537.t1.exon4;Parent=MS.gene45537.t1 |
| chr2.1 | CDS | 6373289 | 6373376 | 6373289 | ID=cds.MS.gene45537.t1;Parent=MS.gene45537.t1 |
| chr2.1 | exon | 6373468 | 6373517 | 6373468 | ID=MS.gene45537.t1.exon5;Parent=MS.gene45537.t1 |
| chr2.1 | CDS | 6373468 | 6373517 | 6373468 | ID=cds.MS.gene45537.t1;Parent=MS.gene45537.t1 |
| chr2.1 | exon | 6375431 | 6375520 | 6375431 | ID=MS.gene45537.t1.exon6;Parent=MS.gene45537.t1 |
| chr2.1 | CDS | 6375431 | 6375520 | 6375431 | ID=cds.MS.gene45537.t1;Parent=MS.gene45537.t1 |
| chr2.1 | exon | 6375612 | 6375665 | 6375612 | ID=MS.gene45537.t1.exon7;Parent=MS.gene45537.t1 |
| chr2.1 | CDS | 6375612 | 6375665 | 6375612 | ID=cds.MS.gene45537.t1;Parent=MS.gene45537.t1 |
| chr2.1 | exon | 6375840 | 6375917 | 6375840 | ID=MS.gene45537.t1.exon8;Parent=MS.gene45537.t1 |
| chr2.1 | CDS | 6375840 | 6375917 | 6375840 | ID=cds.MS.gene45537.t1;Parent=MS.gene45537.t1 |
| chr2.1 | exon | 6375999 | 6376067 | 6375999 | ID=MS.gene45537.t1.exon9;Parent=MS.gene45537.t1 |
| chr2.1 | CDS | 6375999 | 6376067 | 6375999 | ID=cds.MS.gene45537.t1;Parent=MS.gene45537.t1 |
| chr2.1 | exon | 6376153 | 6376308 | 6376153 | ID=MS.gene45537.t1.exon10;Parent=MS.gene45537.t1 |
| chr2.1 | CDS | 6376153 | 6376308 | 6376153 | ID=cds.MS.gene45537.t1;Parent=MS.gene45537.t1 |
| chr2.1 | exon | 6376396 | 6376522 | 6376396 | ID=MS.gene45537.t1.exon11;Parent=MS.gene45537.t1 |
| chr2.1 | CDS | 6376396 | 6376522 | 6376396 | ID=cds.MS.gene45537.t1;Parent=MS.gene45537.t1 |
| chr2.1 | exon | 6377004 | 6377041 | 6377004 | ID=MS.gene45537.t1.exon12;Parent=MS.gene45537.t1 |
| chr2.1 | CDS | 6377004 | 6377041 | 6377004 | ID=cds.MS.gene45537.t1;Parent=MS.gene45537.t1 |
| chr2.1 | exon | 6378178 | 6378267 | 6378178 | ID=MS.gene45537.t1.exon13;Parent=MS.gene45537.t1 |
| chr2.1 | CDS | 6378178 | 6378267 | 6378178 | ID=cds.MS.gene45537.t1;Parent=MS.gene45537.t1 |
| chr2.1 | exon | 6378356 | 6378460 | 6378356 | ID=MS.gene45537.t1.exon14;Parent=MS.gene45537.t1 |
| chr2.1 | CDS | 6378356 | 6378460 | 6378356 | ID=cds.MS.gene45537.t1;Parent=MS.gene45537.t1 |
| chr2.1 | exon | 6379165 | 6379314 | 6379165 | ID=MS.gene45537.t1.exon15;Parent=MS.gene45537.t1 |
| chr2.1 | CDS | 6379165 | 6379314 | 6379165 | ID=cds.MS.gene45537.t1;Parent=MS.gene45537.t1 |
| chr2.1 | exon | 6379672 | 6379781 | 6379672 | ID=MS.gene45537.t1.exon16;Parent=MS.gene45537.t1 |
| chr2.1 | CDS | 6379672 | 6379781 | 6379672 | ID=cds.MS.gene45537.t1;Parent=MS.gene45537.t1 |
| chr2.1 | exon | 6381303 | 6381564 | 6381303 | ID=MS.gene45537.t1.exon17;Parent=MS.gene45537.t1 |
| chr2.1 | CDS | 6381303 | 6381564 | 6381303 | ID=cds.MS.gene45537.t1;Parent=MS.gene45537.t1 |
| Gene Sequence |
| Protein sequence |
