AlfalfaGEDB | MS.gene08934

M. sativa cultivar XinJiangDaYe / MS.gene08934

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00646.36 PF01344.28 PF13964.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08934.t1	XP_024628489.1	99.5	416	2	0	118	533	22	437	1.50E-240	842

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08934.t1	Q93W93	64.4	416	144	2	118	533	23	434	5.1e-157	555.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08934.t1	G7LHY4	99.5	416	2	0	118	533	22	437	1.1e-240	842.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene013003	MS.gene08934	PPI
MS.gene035805	MS.gene08934	PPI
MS.gene049230	MS.gene08934	PPI
MS.gene052072	MS.gene08934	PPI
MS.gene08934	MS.gene044004	PPI
MS.gene08934	MS.gene40946	PPI
MS.gene08934	MS.gene013259	PPI
MS.gene08934	MS.gene06344	PPI
MS.gene08934	MS.gene044005	PPI
MS.gene08934	MS.gene67151	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08934.t1	MTR_8g085600	95.642	436	14	1	103	533	2	437	0.0	865
MS.gene08934.t1	MTR_4g114110	74.048	420	106	2	117	533	23	442	0.0	664
MS.gene08934.t1	MTR_2g019230	31.469	286	181	8	173	447	52	333	1.86e-35	137
MS.gene08934.t1	MTR_3g073640	27.968	379	188	12	171	473	41	410	2.52e-35	138
MS.gene08934.t1	MTR_2g008440	27.982	436	235	15	173	532	43	475	3.01e-33	132
MS.gene08934.t1	MTR_8g080370	30.072	276	179	7	173	440	51	320	2.85e-30	122
MS.gene08934.t1	MTR_8g030940	28.797	316	211	8	172	481	24	331	3.99e-30	121
MS.gene08934.t1	MTR_3g085570	28.159	277	183	8	172	439	34	303	9.07e-28	115
MS.gene08934.t1	MTR_2g094093	30.769	286	178	11	166	442	13	287	4.51e-26	110
MS.gene08934.t1	MTR_7g029290	27.076	277	182	9	177	442	59	326	1.77e-22	100

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08934.t1	AT1G55270	77.644	416	89	2	118	533	23	434	0.0	694
MS.gene08934.t1	AT1G55270	74.679	312	75	2	222	533	1	308	1.63e-177	502
MS.gene08934.t1	AT1G22040	28.082	438	231	12	173	532	43	474	1.96e-34	135
MS.gene08934.t1	AT1G67480	29.595	321	206	10	162	473	28	337	3.58e-33	130
MS.gene08934.t1	AT1G67480	29.595	321	206	10	162	473	28	337	3.58e-33	130
MS.gene08934.t1	AT1G67480	29.595	321	206	10	162	473	28	337	3.58e-33	130
MS.gene08934.t1	AT1G30090	29.352	293	192	7	159	440	39	327	1.02e-31	127
MS.gene08934.t1	AT3G61350	26.211	351	224	13	165	497	13	346	2.67e-30	122
MS.gene08934.t1	AT3G61350	26.211	351	224	13	165	497	13	346	2.67e-30	122
MS.gene08934.t1	AT1G27420	28.058	278	183	6	172	439	9	279	1.03e-25	108

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Find 135 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAATTTCCAGACAGA+AGG	0.548143	4.4:-14531696	None:intergenic
AAAATTATTACGTTCAAAGT+AGG	0.423720	4.4:-14530822	None:intergenic
AAATCACGTTGCTGGTGATT+GGG	0.491372	4.4:+14530738	MS.gene08934:CDS
AACTGCCTCTATGTTGCTGG+TGG	0.585089	4.4:+14532042	MS.gene08934:CDS
AAGAACTCTTCGATCTGCTG+AGG	0.575958	4.4:+14532083	MS.gene08934:CDS
AAGACAGCATACAATGTGTA+AGG	0.536294	4.4:-14530420	None:intergenic
AAGCTCCATCTGTTCCGATT+AGG	0.349975	4.4:-14532114	None:intergenic
AAGTTTGTGAAGGAAAACTC+TGG	0.617914	4.4:+14531072	MS.gene08934:CDS
AATAAAAGGAACCATAGCTG+TGG	0.696250	4.4:-14532151	None:intergenic
AATAACTGCCTCTATGTTGC+TGG	0.434024	4.4:+14532039	MS.gene08934:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAAATTTCCAGACAGA+AGG	-	chr4.4:14531699-14531718	None:intergenic	30.0%
AATCCAAGTATCTCACTTAA+CGG	+	chr4.4:14532303-14532322	MS.gene08934:CDS	30.0%
ATTGCCATATTTGGTAGATA+GGG	-	chr4.4:14531813-14531832	None:intergenic	30.0%
CAAAGTAGGTGATAAAATGT+AGG	-	chr4.4:14530811-14530830	None:intergenic	30.0%
GGTCTTTAGTTAGGAATTTA+TGG	+	chr4.4:14532592-14532611	MS.gene08934:CDS	30.0%
TATCAGAAAAAAAGGCAAGT+AGG	-	chr4.4:14530623-14530642	None:intergenic	30.0%
TCACAAATCTAAGTTTGTGA+AGG	+	chr4.4:14531062-14531081	MS.gene08934:CDS	30.0%
TGCTATTGTAAAGTAGATTC+AGG	+	chr4.4:14531445-14531464	MS.gene08934:CDS	30.0%
TTCTCCAAACTCTATTCTAA+AGG	+	chr4.4:14530461-14530480	MS.gene08934:CDS	30.0%
TTTACTTTAATTGCTGCAAG+CGG	-	chr4.4:14531246-14531265	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	14530408	14532680	14530408	ID=MS.gene08934
chr4.4	mRNA	14530408	14532680	14530408	ID=MS.gene08934.t1;Parent=MS.gene08934
chr4.4	exon	14530408	14530482	14530408	ID=MS.gene08934.t1.exon1;Parent=MS.gene08934.t1
chr4.4	CDS	14530408	14530482	14530408	ID=cds.MS.gene08934.t1;Parent=MS.gene08934.t1
chr4.4	exon	14530680	14530833	14530680	ID=MS.gene08934.t1.exon2;Parent=MS.gene08934.t1
chr4.4	CDS	14530680	14530833	14530680	ID=cds.MS.gene08934.t1;Parent=MS.gene08934.t1
chr4.4	exon	14530895	14530951	14530895	ID=MS.gene08934.t1.exon3;Parent=MS.gene08934.t1
chr4.4	CDS	14530895	14530951	14530895	ID=cds.MS.gene08934.t1;Parent=MS.gene08934.t1
chr4.4	exon	14531049	14531099	14531049	ID=MS.gene08934.t1.exon4;Parent=MS.gene08934.t1
chr4.4	CDS	14531049	14531099	14531049	ID=cds.MS.gene08934.t1;Parent=MS.gene08934.t1
chr4.4	exon	14531416	14532680	14531416	ID=MS.gene08934.t1.exon5;Parent=MS.gene08934.t1
chr4.4	CDS	14531416	14532680	14531416	ID=cds.MS.gene08934.t1;Parent=MS.gene08934.t1

Gene Sequence

>MS.gene08934

ATGAATCGTCCACCTTACACATTGTATGCTGTCTTGCCTTCACCGAAGCGATATTCTCCAAACTCTATTCTAAAGGTGTGGAACTGGGTATTGTGGTTCTAGCATTTTAGGAAACATCAACATGACACTAATCTTTATGAATCTCATCGCGCGTCATATTTAGAGCTCTTATTGATGCGTAGTATGTGTTGGTAAGCTGTGTCATTTTCTTACCTACTTGCCTTTTTTTCTGATACCTTCCAGACTTTTTGAATCGACTACTTACCCCTCAGCCTAAACATCCATTGCAGCATTCTATGGGATACTTATCATTTTTCACTCTGAAATGTCAAATCACGTTGCTGGTGATTGGGTTATCTCTGCTCGCATGCAATTATCAGTTTGTATCTCTTAGCATTGTCCTACATTTTATCACCTACTTTGAACGTAATAATTTTAACTTTATATCCGTCTTTCTGTTAAAACGCGTCTCAAACCTTCATATTAGCCCAAGCTGTTGGGCTTCTTCACAAATCCGAGTTTGTGAAGGAAAATTCCGGTGCATGTATGTATCGGAAGCTCCTGTTGTTTTATTAAATTAAATTTCACCGCATAATGAAGCATGAAACTGATATTGCCTTGGTTGGTCTATTGAACTCAAGCTGTTGTGATTCTTCACAAATCTAAGTTTGTGAAGGAAAACTCTGGTGCATGTATGTTTCAGCAGCTCCTGTTGTTTTATTAATTAAATTTCAGCGCATAACGAAGCATGAAAGCAATATTGCCTTGTTGGCCTGTTGATCTCATGATGTTTGTGATGGGAATAACTTGGTGGTTTTGTTATTGCTGCCGTTCCCCGCTTGCAGCAATTAAAGTAAAACGGTTTTGTTCATATATACTGATGTTAATACTAAATATGAACTGTAATTATAATAAAAATTTCAACTTGATAAAATAATTTATTTTGGTGCATATTATTAGGGATGCCTTTTTGGTACTTTGATTCTTTCAACATATATATACTAACAGGTAAAGTTTCACAGGTAGATTCTGTTTCATGCTATTGTAAAGTAGATTCAGGCCTGAAAACAGTAGCTGGGGCGAGGAAGTTTGTTCCAGGATCAAAGATATGCATCCAACCTGATATAAACCCGAATGCACACAGGAACAAAAACTCGCGTAAAGAGAAGACAAGAGTTCAGCCTCCTTTGCTACCTGGTCTTCCTGATGATCTTGCTATTGCTTGTCTAATTCGTGTACCCCGAGTTGAACATAGGAAACTGCGTTTGGTTTGCAAGAGATGGTATCGCCTTCTGTCTGGAAATTTCTTTTATTCGCTCCGGAAAAGTCTTGGAATGGCAGAAGAATGGGTTTATGTCATCAAAAGAGACCGTGAGGGAAAAATTTCATTGCACGCTTTTGACCCTATCTACCAAATATGGCAATCCCTCCCGCCTGTTCCTGGGGAATATTCTGAAGCATTGGGATTTGGCTGTGCCGTTCTTAGTGGTTGCCACTTGTACTTGTTTGGTGGAAGAGATCCGTTGAAGGGATCTATGAGGCGTGTCATTTTCTACAACGCACGTACAAATAAATGGCACAGAGCACCCGATATGCTGCGGAAACGTCATCTTTTTGGTTCTTGCGTAATAAATAACTGCCTCTATGTTGCTGGTGGGGAATGTAAAGGAATTCAAAGAACTCTTCGATCTGCTGAGGTTTACGACCCTAATCGGAACAGATGGAGCTTTATCTCGGAGATGACCACAGCTATGGTTCCTTTTATTGGTGTTATTCATAATGGCACATGGTTTTTGAAGGGGCTCGGGTCGAATCGCAATGTCATATGTGAAGCCTATTCACAGGAATCCGATACCTGGACTCCAGTAAACAATGGAATGGTCGTGGGATGGCGTAATCCAAGTATCTCACTTAACGGAGAACTCTATGCACTTGATTGCCAAGACGGCTGTAAACTCAAAGTCTATGATATGGCGACGGATTCATGGAAGAAGTTTATCGATAGCAGGCTTCATTTAGGTAGCTCTCGTGCTCTCGATGCTGCAGCTCTTGTTTCACTTAATGGAAAACTATGCATTATACGCAACAATATGAGCATCAGTCTGGTTGATGTTTCGAGTCCAAACAGACGCGTTGAAAACAATCCTCACCTCTGGGAAAATATTGCTGGAAAGGGTCCTGTCAGGTCTTTAGTTAGGAATTTATGGTCTACTATCGCAGGGCGCGGTGGTTTGAAGAGTCACATTGTTCACTGTCAAGTTCTTCAAGCCTGA

Protein sequence

>MS.gene08934.t1

MNRPPYTLYAVLPSPKRYSPNSILKPKHPLQHSMGYLSFFTLKCQITLLVIGLSLLACNYQFVSLSIVLHFITYFEPQAVGLLHKSEFVKENSGASVVILHKSKFVKENSGACKVSQVDSVSCYCKVDSGLKTVAGARKFVPGSKICIQPDINPNAHRNKNSRKEKTRVQPPLLPGLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLSGNFFYSLRKSLGMAEEWVYVIKRDREGKISLHAFDPIYQIWQSLPPVPGEYSEALGFGCAVLSGCHLYLFGGRDPLKGSMRRVIFYNARTNKWHRAPDMLRKRHLFGSCVINNCLYVAGGECKGIQRTLRSAEVYDPNRNRWSFISEMTTAMVPFIGVIHNGTWFLKGLGSNRNVICEAYSQESDTWTPVNNGMVVGWRNPSISLNGELYALDCQDGCKLKVYDMATDSWKKFIDSRLHLGSSRALDAAALVSLNGKLCIIRNNMSISLVDVSSPNRRVENNPHLWENIAGKGPVRSLVRNLWSTIAGRGGLKSHIVHCQVLQA