Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20407.t1 | XP_024637690.1 | 96.3 | 347 | 12 | 1 | 1 | 346 | 250 | 596 | 3.00E-165 | 591.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20407.t1 | A0A072URA5 | 96.0 | 347 | 11 | 2 | 1 | 346 | 250 | 594 | 2.6e-163 | 584.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene20407 | -0.813691 | 2.25E-51 | -1.69E-46 |
| MS.gene04917 | MS.gene20407 | -0.806743 | 7.09E-50 | -1.69E-46 |
| MS.gene051245 | MS.gene20407 | -0.81693 | 4.29E-52 | -1.69E-46 |
| MS.gene051748 | MS.gene20407 | -0.807769 | 4.30E-50 | -1.69E-46 |
| MS.gene052242 | MS.gene20407 | 0.81233 | 4.48E-51 | -1.69E-46 |
| MS.gene052302 | MS.gene20407 | -0.809463 | 1.87E-50 | -1.69E-46 |
| MS.gene052309 | MS.gene20407 | 0.801013 | 1.10E-48 | -1.69E-46 |
| MS.gene053109 | MS.gene20407 | -0.802867 | 4.58E-49 | -1.69E-46 |
| MS.gene05344 | MS.gene20407 | 0.811074 | 8.40E-51 | -1.69E-46 |
| MS.gene055174 | MS.gene20407 | -0.812587 | 3.93E-51 | -1.69E-46 |
| MS.gene055441 | MS.gene20407 | -0.808687 | 2.74E-50 | -1.69E-46 |
| MS.gene056464 | MS.gene20407 | 0.816981 | 4.18E-52 | -1.69E-46 |
| MS.gene056752 | MS.gene20407 | -0.819373 | 1.20E-52 | -1.69E-46 |
| MS.gene056830 | MS.gene20407 | 0.81134 | 7.35E-51 | -1.69E-46 |
| MS.gene056849 | MS.gene20407 | -0.818247 | 2.17E-52 | -1.69E-46 |
| MS.gene057057 | MS.gene20407 | -0.811035 | 8.56E-51 | -1.69E-46 |
| MS.gene057451 | MS.gene20407 | 0.862776 | 3.99E-64 | -1.69E-46 |
| MS.gene057452 | MS.gene20407 | 0.864489 | 1.17E-64 | -1.69E-46 |
| MS.gene058238 | MS.gene20407 | -0.8217 | 3.51E-53 | -1.69E-46 |
| MS.gene058661 | MS.gene20407 | 0.817167 | 3.79E-52 | -1.69E-46 |
| MS.gene059171 | MS.gene20407 | -0.804571 | 2.03E-49 | -1.69E-46 |
| MS.gene059872 | MS.gene20407 | 0.850133 | 2.07E-60 | -1.69E-46 |
| MS.gene060084 | MS.gene20407 | -0.810644 | 1.04E-50 | -1.69E-46 |
| MS.gene060869 | MS.gene20407 | -0.836217 | 1.07E-56 | -1.69E-46 |
| MS.gene060870 | MS.gene20407 | -0.801265 | 9.77E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20407.t1 | MTR_4g117570 | 96.542 | 347 | 9 | 2 | 1 | 346 | 250 | 594 | 0.0 | 669 |
| MS.gene20407.t1 | MTR_2g021260 | 54.335 | 346 | 94 | 8 | 2 | 346 | 251 | 533 | 2.99e-102 | 311 |
| MS.gene20407.t1 | MTR_4g134350 | 45.745 | 94 | 47 | 2 | 2 | 91 | 252 | 345 | 3.86e-16 | 79.3 |
| MS.gene20407.t1 | MTR_4g134350 | 45.745 | 94 | 47 | 2 | 2 | 91 | 252 | 345 | 4.04e-16 | 79.7 |
| MS.gene20407.t1 | MTR_4g134350 | 45.745 | 94 | 47 | 2 | 2 | 91 | 252 | 345 | 5.08e-16 | 79.0 |
| MS.gene20407.t1 | MTR_2g027870 | 72.222 | 36 | 10 | 0 | 2 | 37 | 307 | 342 | 5.20e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20407.t1 | AT3G23540 | 46.307 | 352 | 142 | 11 | 1 | 342 | 107 | 421 | 7.72e-80 | 250 |
| MS.gene20407.t1 | AT4G14290 | 45.821 | 347 | 142 | 12 | 1 | 341 | 100 | 406 | 1.00e-78 | 247 |
| MS.gene20407.t1 | AT4G14290 | 45.821 | 347 | 142 | 12 | 1 | 341 | 135 | 441 | 3.30e-78 | 246 |
| MS.gene20407.t1 | AT3G23540 | 46.307 | 352 | 142 | 11 | 1 | 342 | 223 | 537 | 4.77e-78 | 249 |
| MS.gene20407.t1 | AT3G23540 | 46.176 | 353 | 143 | 11 | 1 | 343 | 250 | 565 | 1.11e-77 | 248 |
| MS.gene20407.t1 | AT4G14290 | 45.821 | 347 | 142 | 12 | 1 | 341 | 196 | 502 | 1.38e-77 | 246 |
| MS.gene20407.t1 | AT4G14290 | 45.821 | 347 | 142 | 12 | 1 | 341 | 250 | 556 | 7.57e-77 | 246 |
| MS.gene20407.t1 | AT4G14290 | 59.204 | 201 | 76 | 4 | 1 | 200 | 250 | 445 | 5.91e-68 | 222 |
Find 83 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCCTGTGGCAGGGGTGGC+TGG | 0.145025 | 6.4:-39312893 | None:intergenic |
| TTACCGAAGTAATCATTTAC+AGG | 0.307741 | 6.4:-39311271 | None:intergenic |
| CAGTACTGTAGATGCTATTA+AGG | 0.316481 | 6.4:+39311562 | MS.gene20407:CDS |
| CATCCTGCTCATTGGCCGTT+TGG | 0.334399 | 6.4:-39311594 | None:intergenic |
| TTGTCAGATGGTCATCCTTA+TGG | 0.348703 | 6.4:+39312370 | MS.gene20407:CDS |
| GTCCTGTGGCAGGGGTGGCT+GGG | 0.361215 | 6.4:-39312892 | None:intergenic |
| TCTTTCTTCCTCCTCTGCAC+TGG | 0.372065 | 6.4:-39312467 | None:intergenic |
| GTATGATATTCAGATGTTAA+TGG | 0.372335 | 6.4:+39312587 | MS.gene20407:intron |
| TGGAGATCTGTGCACGAATT+AGG | 0.376826 | 6.4:+39311392 | MS.gene20407:CDS |
| GCATTAAACCATCCATGATA+TGG | 0.382988 | 6.4:-39313055 | None:intergenic |
| GCTGGTGGTTGTTCTGCCTT+CGG | 0.399267 | 6.4:-39312651 | None:intergenic |
| TTCTTCTGATGCAATGGAAA+TGG | 0.401054 | 6.4:-39312802 | None:intergenic |
| TATCAACTTGAAGACCTTGC+AGG | 0.403667 | 6.4:+39312436 | MS.gene20407:CDS |
| CATCCAACACGGTGGGTACA+TGG | 0.408172 | 6.4:-39312396 | None:intergenic |
| GGATGGTTTAATGCGTCGTT+GGG | 0.413151 | 6.4:+39313064 | MS.gene20407:CDS |
| TTTCCGAGTCAAGTCCAATT+GGG | 0.416021 | 6.4:+39312865 | MS.gene20407:CDS |
| TGACTCGGAAACCGCTGAAA+TGG | 0.436142 | 6.4:-39312853 | None:intergenic |
| CCGCCACAGTAACTGTTGTT+AGG | 0.440346 | 6.4:+39313021 | MS.gene20407:CDS |
| GTTTCCGAGTCAAGTCCAAT+TGG | 0.445373 | 6.4:+39312864 | MS.gene20407:CDS |
| ATAATGTGTTGTCCTGTGGC+AGG | 0.463595 | 6.4:-39312902 | None:intergenic |
| AACCCAGCCACCCCTGCCAC+AGG | 0.466505 | 6.4:+39312890 | MS.gene20407:CDS |
| CAAACCTCCATCCTGCTCAT+TGG | 0.479086 | 6.4:-39311602 | None:intergenic |
| TCTTCCTCCTCTGCACTGGA+TGG | 0.479687 | 6.4:-39312463 | None:intergenic |
| TCTACAGTACTGCTAGTTGA+TGG | 0.481450 | 6.4:-39311551 | None:intergenic |
| GTGGGTACATGGGGACCATA+AGG | 0.484951 | 6.4:-39312385 | None:intergenic |
| GATGTTAATGGAAGCAGTAA+TGG | 0.488225 | 6.4:+39312599 | MS.gene20407:intron |
| GTTCCAAACGGCCAATGAGC+AGG | 0.490303 | 6.4:+39311591 | MS.gene20407:CDS |
| TGACAATTCAAAGCTTATCA+TGG | 0.492892 | 6.4:-39312353 | None:intergenic |
| AATGTGTTGTCCTGTGGCAG+GGG | 0.499356 | 6.4:-39312900 | None:intergenic |
| GAATCCTGCTGGCCATATCA+TGG | 0.504478 | 6.4:+39313043 | MS.gene20407:CDS |
| TGGATGGTTTAATGCGTCGT+TGG | 0.508768 | 6.4:+39313063 | MS.gene20407:CDS |
| ATCCAACACGGTGGGTACAT+GGG | 0.517832 | 6.4:-39312395 | None:intergenic |
| TACAGATTCTTCTGATGCAA+TGG | 0.524140 | 6.4:-39312808 | None:intergenic |
| TAATGTGTTGTCCTGTGGCA+GGG | 0.537316 | 6.4:-39312901 | None:intergenic |
| TCTGCAACCTCCTGAGGATG+AGG | 0.539377 | 6.4:+39311228 | MS.gene20407:CDS |
| TGTAAATGATTACTTCGGTA+AGG | 0.540682 | 6.4:+39311273 | MS.gene20407:CDS |
| GATTCACCAACCTCATCCTC+AGG | 0.541847 | 6.4:-39311238 | None:intergenic |
| CCATCCATGATATGGCCAGC+AGG | 0.545268 | 6.4:-39313047 | None:intergenic |
| AGATGAACAAAGTGTTAATG+AGG | 0.548504 | 6.4:+39311966 | MS.gene20407:CDS |
| TATCATGGATGAAGAGGGTG+GGG | 0.549659 | 6.4:-39312338 | None:intergenic |
| CAATGTTCTGCAACCTCCTG+AGG | 0.553134 | 6.4:+39311222 | MS.gene20407:CDS |
| GACTCTTTACTCAGGATGCA+TGG | 0.555592 | 6.4:+39311372 | MS.gene20407:intron |
| TTCCGAGTCAAGTCCAATTG+GGG | 0.556734 | 6.4:+39312866 | MS.gene20407:CDS |
| TCCGCTTGTATTGCTAGACT+CGG | 0.564255 | 6.4:-39312931 | None:intergenic |
| TGTGAGTCATCTTTATCTGA+TGG | 0.570709 | 6.4:-39312702 | None:intergenic |
| GTGTTGTCCTGTGGCAGGGG+TGG | 0.571540 | 6.4:-39312897 | None:intergenic |
| CAACCTCCTGAGGATGAGGT+TGG | 0.573360 | 6.4:+39311232 | MS.gene20407:CDS |
| ACATTAGCAATACTACTGGC+TGG | 0.577814 | 6.4:-39312669 | None:intergenic |
| AAAGCTTATCATGGATGAAG+AGG | 0.577943 | 6.4:-39312344 | None:intergenic |
| ATAAGCTTTGAATTGTCAGA+TGG | 0.579614 | 6.4:+39312358 | MS.gene20407:CDS |
| AATGGAGTCACTGAAGGACC+TGG | 0.585649 | 6.4:+39312617 | MS.gene20407:CDS |
| TCAAAGTAAAACTGAGGACG+TGG | 0.589417 | 6.4:-39311178 | None:intergenic |
| AGATGACTCACATTCTTCAC+AGG | 0.589430 | 6.4:+39312713 | MS.gene20407:CDS |
| CCTGCTGGCCATATCATGGA+TGG | 0.591171 | 6.4:+39313047 | MS.gene20407:CDS |
| TCCAACACGGTGGGTACATG+GGG | 0.595552 | 6.4:-39312394 | None:intergenic |
| TTATCATGGATGAAGAGGGT+GGG | 0.596440 | 6.4:-39312339 | None:intergenic |
| CAAACGGCCAATGAGCAGGA+TGG | 0.600542 | 6.4:+39311595 | MS.gene20407:CDS |
| CACTGGATGGAAAACCTGCA+AGG | 0.604166 | 6.4:-39312450 | None:intergenic |
| TTAAGGAAGTCAGTTCCAAA+CGG | 0.604253 | 6.4:+39311579 | MS.gene20407:CDS |
| GACCCTGTAAATGATTACTT+CGG | 0.604489 | 6.4:+39311268 | MS.gene20407:CDS |
| AGATACATTAGCAATACTAC+TGG | 0.612355 | 6.4:-39312673 | None:intergenic |
| AGCAGTAATGGAGTCACTGA+AGG | 0.616451 | 6.4:+39312611 | MS.gene20407:CDS |
| TCCCCATGTACCCACCGTGT+TGG | 0.619550 | 6.4:+39312393 | MS.gene20407:CDS |
| CTTATCATGGATGAAGAGGG+TGG | 0.623493 | 6.4:-39312340 | None:intergenic |
| ACTGTTGTTAGGAATCCTGC+TGG | 0.626917 | 6.4:+39313032 | MS.gene20407:CDS |
| TGAGTCAAATACCATTTCAG+CGG | 0.630555 | 6.4:+39312842 | MS.gene20407:CDS |
| GTTGGATGACAATCAGTATG+TGG | 0.637267 | 6.4:+39312411 | MS.gene20407:CDS |
| TACCGAAGTAATCATTTACA+GGG | 0.638334 | 6.4:-39311270 | None:intergenic |
| AAGCTTATCATGGATGAAGA+GGG | 0.643532 | 6.4:-39312343 | None:intergenic |
| ACGGCCAATGAGCAGGATGG+AGG | 0.644801 | 6.4:+39311598 | MS.gene20407:CDS |
| GCCGAGTCTAGCAATACAAG+CGG | 0.649415 | 6.4:+39312930 | MS.gene20407:CDS |
| CCTGGAAGTACAAAATCCGA+AGG | 0.656273 | 6.4:+39312635 | MS.gene20407:CDS |
| ACGGATAATGTGTTGTCCTG+TGG | 0.664488 | 6.4:-39312906 | None:intergenic |
| ATGGAATCAAAGTAAAACTG+AGG | 0.668425 | 6.4:-39311184 | None:intergenic |
| CCTAACAACAGTTACTGTGG+CGG | 0.668864 | 6.4:-39313021 | None:intergenic |
| TGTATTGCTAGACTCGGCTA+CGG | 0.671705 | 6.4:-39312925 | None:intergenic |
| TGATTGTCATCCAACACGGT+GGG | 0.675098 | 6.4:-39312403 | None:intergenic |
| TCACCAACCTCATCCTCAGG+AGG | 0.681966 | 6.4:-39311235 | None:intergenic |
| TCCGAGTCAAGTCCAATTGG+GGG | 0.694971 | 6.4:+39312867 | MS.gene20407:CDS |
| ATTCCTAACAACAGTTACTG+TGG | 0.707631 | 6.4:-39313024 | None:intergenic |
| CTGATTGTCATCCAACACGG+TGG | 0.711872 | 6.4:-39312404 | None:intergenic |
| ATACTGATTGTCATCCAACA+CGG | 0.712282 | 6.4:-39312407 | None:intergenic |
| TTAGCAATACTACTGGCTGG+TGG | 0.719984 | 6.4:-39312666 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACATAATTAAATTTGA+GGG | + | chr6.4:39311142-39311161 | MS.gene20407:CDS | 10.0% |
| !! | AATTAAAAAAAAGGATAAAA+AGG | - | chr6.4:39311997-39312016 | None:intergenic | 10.0% |
| !!! | TAATCATTTTTTATAGAAAA+AGG | - | chr6.4:39310895-39310914 | None:intergenic | 10.0% |
| !!! | TTGTTTTAAATAAAAATATG+AGG | - | chr6.4:39311873-39311892 | None:intergenic | 10.0% |
| !! | CAAAAACATAATTAAATTTG+AGG | + | chr6.4:39311141-39311160 | MS.gene20407:CDS | 15.0% |
| !! | GAAGAAATAATTAAGAAATT+AGG | - | chr6.4:39311464-39311483 | None:intergenic | 15.0% |
| !! | TAACATACATGAAAAAAAAA+AGG | + | chr6.4:39312534-39312553 | MS.gene20407:intron | 15.0% |
| !! | TAATTCAAATATCTAACTTT+AGG | + | chr6.4:39312212-39312231 | MS.gene20407:intron | 15.0% |
| !!! | GACTTATTTTATAATTTTGA+AGG | - | chr6.4:39311000-39311019 | None:intergenic | 15.0% |
| !!! | TATATTTGCTATAAGATTAT+TGG | + | chr6.4:39312057-39312076 | MS.gene20407:intron | 15.0% |
| !! | AAATTTGTATTTGAATTCTG+TGG | + | chr6.4:39311891-39311910 | MS.gene20407:intron | 20.0% |
| !! | ATTGTGAAAAAAGATGTTTA+TGG | - | chr6.4:39311206-39311225 | None:intergenic | 20.0% |
| !! | TAAATAAAAATATGAGGAGA+CGG | - | chr6.4:39311841-39311860 | None:intergenic | 20.0% |
| !! | TAATTAAGAAATTAGGTACT+TGG | - | chr6.4:39311457-39311476 | None:intergenic | 20.0% |
| !!! | CAGTGAAATTTTATCAAAAA+TGG | - | chr6.4:39311326-39311345 | None:intergenic | 20.0% |
| !!! | CGGTTTTAAATAAAAATATG+AGG | - | chr6.4:39311847-39311866 | None:intergenic | 20.0% |
| !!! | TTTTTTCATGTATGTTAATC+AGG | - | chr6.4:39312531-39312550 | None:intergenic | 20.0% |
| ! | AAATAAAAATATGAGGAGAC+GGG | - | chr6.4:39311840-39311859 | None:intergenic | 25.0% |
| ! | AAGCAACTTTAAACATCTAA+AGG | - | chr6.4:39311022-39311041 | None:intergenic | 25.0% |
| ! | AGTACAATAGAAATATCTAG+AGG | - | chr6.4:39311051-39311070 | None:intergenic | 25.0% |
| ! | ATCTAACAAATAAACAGGTA+AGG | - | chr6.4:39311525-39311544 | None:intergenic | 25.0% |
| ! | ATTAGTTAATGTGATGCTAA+TGG | - | chr6.4:39311812-39311831 | None:intergenic | 25.0% |
| ! | ATTATACAATGGACCATTTA+CGG | + | chr6.4:39312082-39312101 | MS.gene20407:intron | 25.0% |
| ! | GATTATTGGCAATTATACAA+TGG | + | chr6.4:39312071-39312090 | MS.gene20407:intron | 25.0% |
| ! | GATTCACACAAAAATTCTAA+TGG | - | chr6.4:39311497-39311516 | None:intergenic | 25.0% |
| ! | GTATGATATTCAGATGTTAA+TGG | + | chr6.4:39312587-39312606 | MS.gene20407:intron | 25.0% |
| ! | TCTGTATCTAACAAATAAAC+AGG | - | chr6.4:39311530-39311549 | None:intergenic | 25.0% |
| ! | TTGAAACTGATGAAATACTT+AGG | + | chr6.4:39312235-39312254 | MS.gene20407:intron | 25.0% |
| !! | GAATCATCTTCTAAAAACAA+AGG | + | chr6.4:39311425-39311444 | MS.gene20407:CDS | 25.0% |
| !! | TTTTCAAAAATAGCAACTCA+CGG | + | chr6.4:39313096-39313115 | MS.gene20407:CDS | 25.0% |
| !!! | TCTTTTGAAGAAATATCAGA+TGG | - | chr6.4:39311949-39311968 | None:intergenic | 25.0% |
| AATAAAAATATGAGGAGACG+GGG | - | chr6.4:39311839-39311858 | None:intergenic | 30.0% | |
| AGATACATTAGCAATACTAC+TGG | - | chr6.4:39312676-39312695 | None:intergenic | 30.0% | |
| ATGGAATCAAAGTAAAACTG+AGG | - | chr6.4:39311187-39311206 | None:intergenic | 30.0% | |
| GCATTACGGATCTTTAATAT+GGG | + | chr6.4:39311097-39311116 | MS.gene20407:intron | 30.0% | |
| TAAAACTTGACTCTTTACTC+AGG | + | chr6.4:39311364-39311383 | MS.gene20407:intron | 30.0% | |
| TACCGAAGTAATCATTTACA+GGG | - | chr6.4:39311273-39311292 | None:intergenic | 30.0% | |
| TGACAATTCAAAGCTTATCA+TGG | - | chr6.4:39312356-39312375 | None:intergenic | 30.0% | |
| TGCATTACGGATCTTTAATA+TGG | + | chr6.4:39311096-39311115 | MS.gene20407:intron | 30.0% | |
| TGTAAATGATTACTTCGGTA+AGG | + | chr6.4:39311273-39311292 | MS.gene20407:CDS | 30.0% | |
| TTACCGAAGTAATCATTTAC+AGG | - | chr6.4:39311274-39311293 | None:intergenic | 30.0% | |
| TTATACAATGGACCATTTAC+GGG | + | chr6.4:39312083-39312102 | MS.gene20407:intron | 30.0% | |
| TTGTATTTGAACTACACTTG+AGG | + | chr6.4:39311706-39311725 | MS.gene20407:intron | 30.0% | |
| TTTCATGTATGTTAATCAGG+TGG | - | chr6.4:39312528-39312547 | None:intergenic | 30.0% | |
| ! | AGAGAAGATTCTTTTTGCAT+GGG | - | chr6.4:39312750-39312769 | None:intergenic | 30.0% |
| ! | AGATGAACAAAGTGTTAATG+AGG | + | chr6.4:39311966-39311985 | MS.gene20407:CDS | 30.0% |
| ! | ATCTTCTAAAAACAAAGGCA+TGG | + | chr6.4:39311430-39311449 | MS.gene20407:intron | 30.0% |
| ! | GTTTTATATGCTCTGCATTA+CGG | + | chr6.4:39311083-39311102 | MS.gene20407:intron | 30.0% |
| ! | TAGAGAAGATTCTTTTTGCA+TGG | - | chr6.4:39312751-39312770 | None:intergenic | 30.0% |
| ! | TCTTAATTATTTCTTCTGCG+TGG | + | chr6.4:39311468-39311487 | MS.gene20407:intron | 30.0% |
| !! | ATAAGCTTTGAATTGTCAGA+TGG | + | chr6.4:39312358-39312377 | MS.gene20407:CDS | 30.0% |
| AAAGCTTATCATGGATGAAG+AGG | - | chr6.4:39312347-39312366 | None:intergenic | 35.0% | |
| AAAGGCCTGCAAAATATGAT+GGG | - | chr6.4:39310969-39310988 | None:intergenic | 35.0% | |
| AAGAAATATCAGATGGAACC+TGG | - | chr6.4:39311942-39311961 | None:intergenic | 35.0% | |
| AAGCTTATCATGGATGAAGA+GGG | - | chr6.4:39312346-39312365 | None:intergenic | 35.0% | |
| AGAAATATCAGATGGAACCT+GGG | - | chr6.4:39311941-39311960 | None:intergenic | 35.0% | |
| ATAAAAATATGAGGAGACGG+GGG | - | chr6.4:39311838-39311857 | None:intergenic | 35.0% | |
| ATTCCTAACAACAGTTACTG+TGG | - | chr6.4:39313027-39313046 | None:intergenic | 35.0% | |
| CACGACCAAAAAAATGTATG+TGG | - | chr6.4:39312130-39312149 | None:intergenic | 35.0% | |
| CAGTACTGTAGATGCTATTA+AGG | + | chr6.4:39311562-39311581 | MS.gene20407:CDS | 35.0% | |
| GACCCTGTAAATGATTACTT+CGG | + | chr6.4:39311268-39311287 | MS.gene20407:CDS | 35.0% | |
| GATGTTAATGGAAGCAGTAA+TGG | + | chr6.4:39312599-39312618 | MS.gene20407:intron | 35.0% | |
| GCATTAAACCATCCATGATA+TGG | - | chr6.4:39313058-39313077 | None:intergenic | 35.0% | |
| GTAGTAGGTTAAACTAGAAG+TGG | - | chr6.4:39312169-39312188 | None:intergenic | 35.0% | |
| TAAAGGCCTGCAAAATATGA+TGG | - | chr6.4:39310970-39310989 | None:intergenic | 35.0% | |
| TACAGATTCTTCTGATGCAA+TGG | - | chr6.4:39312811-39312830 | None:intergenic | 35.0% | |
| TGAGTCAAATACCATTTCAG+CGG | + | chr6.4:39312842-39312861 | MS.gene20407:CDS | 35.0% | |
| TGTCAACTTCTTGTTCTGTT+GGG | + | chr6.4:39310931-39310950 | MS.gene20407:intron | 35.0% | |
| TGTGAGTCATCTTTATCTGA+TGG | - | chr6.4:39312705-39312724 | None:intergenic | 35.0% | |
| TTAAGGAAGTCAGTTCCAAA+CGG | + | chr6.4:39311579-39311598 | MS.gene20407:CDS | 35.0% | |
| TTCTTCTGATGCAATGGAAA+TGG | - | chr6.4:39312805-39312824 | None:intergenic | 35.0% | |
| TTGTCAACTTCTTGTTCTGT+TGG | + | chr6.4:39310930-39310949 | MS.gene20407:intron | 35.0% | |
| ! | ATACTGATTGTCATCCAACA+CGG | - | chr6.4:39312410-39312429 | None:intergenic | 35.0% |
| ! | GAGAATCTAGTTCATGTATG+TGG | - | chr6.4:39312268-39312287 | None:intergenic | 35.0% |
| ! | TTTATTGCATGACTTTTCCC+AGG | + | chr6.4:39311921-39311940 | MS.gene20407:intron | 35.0% |
| !! | ATTTTGAAGGCATGCTCTAA+AGG | - | chr6.4:39310987-39311006 | None:intergenic | 35.0% |
| !!! | ATACATTTTTTTGGTCGTGG+TGG | + | chr6.4:39312131-39312150 | MS.gene20407:intron | 35.0% |
| !!! | CACATACATTTTTTTGGTCG+TGG | + | chr6.4:39312128-39312147 | MS.gene20407:intron | 35.0% |
| !!! | TTGCGCCACATACATTTTTT+TGG | + | chr6.4:39312122-39312141 | MS.gene20407:intron | 35.0% |
| AAGGCCTGCAAAATATGATG+GGG | - | chr6.4:39310968-39310987 | None:intergenic | 40.0% | |
| ACATTAGCAATACTACTGGC+TGG | - | chr6.4:39312672-39312691 | None:intergenic | 40.0% | |
| AGATGACTCACATTCTTCAC+AGG | + | chr6.4:39312713-39312732 | MS.gene20407:CDS | 40.0% | |
| GAATTACATTCTTCAAGCCC+AGG | - | chr6.4:39312198-39312217 | None:intergenic | 40.0% | |
| GATTCGAACTAAGCAACTTG+AGG | - | chr6.4:39311765-39311784 | None:intergenic | 40.0% | |
| GTTGGATGACAATCAGTATG+TGG | + | chr6.4:39312411-39312430 | MS.gene20407:CDS | 40.0% | |
| TATCAACTTGAAGACCTTGC+AGG | + | chr6.4:39312436-39312455 | MS.gene20407:CDS | 40.0% | |
| TCAAAGTAAAACTGAGGACG+TGG | - | chr6.4:39311181-39311200 | None:intergenic | 40.0% | |
| TCTACAGTACTGCTAGTTGA+TGG | - | chr6.4:39311554-39311573 | None:intergenic | 40.0% | |
| TTATCATGGATGAAGAGGGT+GGG | - | chr6.4:39312342-39312361 | None:intergenic | 40.0% | |
| TTGTCAGATGGTCATCCTTA+TGG | + | chr6.4:39312370-39312389 | MS.gene20407:CDS | 40.0% | |
| TTTCCGAGTCAAGTCCAATT+GGG | + | chr6.4:39312865-39312884 | MS.gene20407:CDS | 40.0% | |
| ! | AAGTCCCCATCATATTTTGC+AGG | + | chr6.4:39310961-39310980 | MS.gene20407:intron | 40.0% |
| ! | TGCATGATTTTCTTGCAAGC+AGG | + | chr6.4:39312294-39312313 | MS.gene20407:intron | 40.0% |
| ACGGATAATGTGTTGTCCTG+TGG | - | chr6.4:39312909-39312928 | None:intergenic | 45.0% | |
| ACTGTTGTTAGGAATCCTGC+TGG | + | chr6.4:39313032-39313051 | MS.gene20407:CDS | 45.0% | |
| ATAATGTGTTGTCCTGTGGC+AGG | - | chr6.4:39312905-39312924 | None:intergenic | 45.0% | |
| ATGGGTTTCTGTGCTTTGCA+GGG | + | chr6.4:39311115-39311134 | MS.gene20407:intron | 45.0% | |
| ATTCTTCAAGCCCAGGTACT+GGG | - | chr6.4:39312191-39312210 | None:intergenic | 45.0% | |
| CCTAACAACAGTTACTGTGG+CGG | - | chr6.4:39313024-39313043 | None:intergenic | 45.0% | |
| CTTATCATGGATGAAGAGGG+TGG | - | chr6.4:39312343-39312362 | None:intergenic | 45.0% | |
| GACTCTTTACTCAGGATGCA+TGG | + | chr6.4:39311372-39311391 | MS.gene20407:intron | 45.0% | |
| GGATGGTTTAATGCGTCGTT+GGG | + | chr6.4:39313064-39313083 | MS.gene20407:CDS | 45.0% | |
| GGCGCAAAATAGAAATGCAG+TGG | - | chr6.4:39312109-39312128 | None:intergenic | 45.0% | |
| GTTTCCGAGTCAAGTCCAAT+TGG | + | chr6.4:39312864-39312883 | MS.gene20407:CDS | 45.0% | |
| TAACCTACTACCCAGTACCT+GGG | + | chr6.4:39312178-39312197 | MS.gene20407:intron | 45.0% | |
| TAATGTGTTGTCCTGTGGCA+GGG | - | chr6.4:39312904-39312923 | None:intergenic | 45.0% | |
| TATCATGGATGAAGAGGGTG+GGG | - | chr6.4:39312341-39312360 | None:intergenic | 45.0% | |
| TATGGGTTTCTGTGCTTTGC+AGG | + | chr6.4:39311114-39311133 | MS.gene20407:intron | 45.0% | |
| TCCGCTTGTATTGCTAGACT+CGG | - | chr6.4:39312934-39312953 | None:intergenic | 45.0% | |
| TGATTGTCATCCAACACGGT+GGG | - | chr6.4:39312406-39312425 | None:intergenic | 45.0% | |
| TGGAGATCTGTGCACGAATT+AGG | + | chr6.4:39311392-39311411 | MS.gene20407:CDS | 45.0% | |
| TGGATGGTTTAATGCGTCGT+TGG | + | chr6.4:39313063-39313082 | MS.gene20407:CDS | 45.0% | |
| TGTATTGCTAGACTCGGCTA+CGG | - | chr6.4:39312928-39312947 | None:intergenic | 45.0% | |
| TTAACCTACTACCCAGTACC+TGG | + | chr6.4:39312177-39312196 | MS.gene20407:intron | 45.0% | |
| TTCCGAGTCAAGTCCAATTG+GGG | + | chr6.4:39312866-39312885 | MS.gene20407:CDS | 45.0% | |
| TTGCTTAGTTCGAATCCCCT+CGG | + | chr6.4:39311769-39311788 | MS.gene20407:intron | 45.0% | |
| ! | AGCAGTAATGGAGTCACTGA+AGG | + | chr6.4:39312611-39312630 | MS.gene20407:CDS | 45.0% |
| ! | ATTTTACAACCACTCCCGAG+GGG | - | chr6.4:39311787-39311806 | None:intergenic | 45.0% |
| ! | CATTTTACAACCACTCCCGA+GGG | - | chr6.4:39311788-39311807 | None:intergenic | 45.0% |
| ! | CCTGGAAGTACAAAATCCGA+AGG | + | chr6.4:39312635-39312654 | MS.gene20407:CDS | 45.0% |
| ! | CCTTCGGATTTTGTACTTCC+AGG | - | chr6.4:39312638-39312657 | None:intergenic | 45.0% |
| ! | TCATTTTACAACCACTCCCG+AGG | - | chr6.4:39311789-39311808 | None:intergenic | 45.0% |
| ! | TTAGCAATACTACTGGCTGG+TGG | - | chr6.4:39312669-39312688 | None:intergenic | 45.0% |
| !!! | TTTTTTTGGTCGTGGTGGTC+TGG | + | chr6.4:39312136-39312155 | MS.gene20407:intron | 45.0% |
| !!! | TAAATTTTCAATTAAAAAAA+AGG | - | chr6.4:39312006-39312025 | None:intergenic | 5.0% |
| AATGGAGTCACTGAAGGACC+TGG | + | chr6.4:39312617-39312636 | MS.gene20407:CDS | 50.0% | |
| AATGTGTTGTCCTGTGGCAG+GGG | - | chr6.4:39312903-39312922 | None:intergenic | 50.0% | |
| ATCCAACACGGTGGGTACAT+GGG | - | chr6.4:39312398-39312417 | None:intergenic | 50.0% | |
| CAAACCTCCATCCTGCTCAT+TGG | - | chr6.4:39311605-39311624 | None:intergenic | 50.0% | |
| CAATGTTCTGCAACCTCCTG+AGG | + | chr6.4:39311222-39311241 | MS.gene20407:CDS | 50.0% | |
| CACTGGATGGAAAACCTGCA+AGG | - | chr6.4:39312453-39312472 | None:intergenic | 50.0% | |
| CATTCTTCAAGCCCAGGTAC+TGG | - | chr6.4:39312192-39312211 | None:intergenic | 50.0% | |
| CCGCCACAGTAACTGTTGTT+AGG | + | chr6.4:39313021-39313040 | MS.gene20407:CDS | 50.0% | |
| CTGATTGTCATCCAACACGG+TGG | - | chr6.4:39312407-39312426 | None:intergenic | 50.0% | |
| GAAATGCAGTGGCCCGTAAA+TGG | - | chr6.4:39312098-39312117 | None:intergenic | 50.0% | |
| GAATCCTGCTGGCCATATCA+TGG | + | chr6.4:39313043-39313062 | MS.gene20407:CDS | 50.0% | |
| GATTCACCAACCTCATCCTC+AGG | - | chr6.4:39311241-39311260 | None:intergenic | 50.0% | |
| GCCGAGTCTAGCAATACAAG+CGG | + | chr6.4:39312930-39312949 | MS.gene20407:CDS | 50.0% | |
| TCCCCCAATTGGACTTGACT+CGG | - | chr6.4:39312871-39312890 | None:intergenic | 50.0% | |
| TCCGAGTCAAGTCCAATTGG+GGG | + | chr6.4:39312867-39312886 | MS.gene20407:CDS | 50.0% | |
| TCTTTCTTCCTCCTCTGCAC+TGG | - | chr6.4:39312470-39312489 | None:intergenic | 50.0% | |
| TGCTTAGTTCGAATCCCCTC+GGG | + | chr6.4:39311770-39311789 | MS.gene20407:intron | 50.0% | |
| ! | AGGTTTTCCATCCAGTGCAG+AGG | + | chr6.4:39312456-39312475 | MS.gene20407:CDS | 50.0% |
| ! | CACTTGAGGTGCTAGCTAAG+TGG | + | chr6.4:39311720-39311739 | MS.gene20407:intron | 50.0% |
| ! | TGACTCGGAAACCGCTGAAA+TGG | - | chr6.4:39312856-39312875 | None:intergenic | 50.0% |
| ! | TTTTCCATCCAGTGCAGAGG+AGG | + | chr6.4:39312459-39312478 | MS.gene20407:CDS | 50.0% |
| CAAACGGCCAATGAGCAGGA+TGG | + | chr6.4:39311595-39311614 | MS.gene20407:CDS | 55.0% | |
| CAACCTCCTGAGGATGAGGT+TGG | + | chr6.4:39311232-39311251 | MS.gene20407:CDS | 55.0% | |
| CATCCAACACGGTGGGTACA+TGG | - | chr6.4:39312399-39312418 | None:intergenic | 55.0% | |
| CATCCTGCTCATTGGCCGTT+TGG | - | chr6.4:39311597-39311616 | None:intergenic | 55.0% | |
| CCATCCATGATATGGCCAGC+AGG | - | chr6.4:39313050-39313069 | None:intergenic | 55.0% | |
| CCTGCTGGCCATATCATGGA+TGG | + | chr6.4:39313047-39313066 | MS.gene20407:CDS | 55.0% | |
| GCTGGTGGTTGTTCTGCCTT+CGG | - | chr6.4:39312654-39312673 | None:intergenic | 55.0% | |
| GTGGGTACATGGGGACCATA+AGG | - | chr6.4:39312388-39312407 | None:intergenic | 55.0% | |
| GTTCCAAACGGCCAATGAGC+AGG | + | chr6.4:39311591-39311610 | MS.gene20407:CDS | 55.0% | |
| TCACCAACCTCATCCTCAGG+AGG | - | chr6.4:39311238-39311257 | None:intergenic | 55.0% | |
| TCCAACACGGTGGGTACATG+GGG | - | chr6.4:39312397-39312416 | None:intergenic | 55.0% | |
| TCTGCAACCTCCTGAGGATG+AGG | + | chr6.4:39311228-39311247 | MS.gene20407:CDS | 55.0% | |
| TCTTCCTCCTCTGCACTGGA+TGG | - | chr6.4:39312466-39312485 | None:intergenic | 55.0% | |
| ! | TTTTGGTCGTGGTGGTCTGG+TGG | + | chr6.4:39312139-39312158 | MS.gene20407:intron | 55.0% |
| !! | AAGCCCAGGTACTGGGTAGT+AGG | - | chr6.4:39312184-39312203 | None:intergenic | 55.0% |
| ACGGCCAATGAGCAGGATGG+AGG | + | chr6.4:39311598-39311617 | MS.gene20407:CDS | 60.0% | |
| AGTTCGAATCCCCTCGGGAG+TGG | + | chr6.4:39311775-39311794 | MS.gene20407:intron | 60.0% | |
| TCCCCATGTACCCACCGTGT+TGG | + | chr6.4:39312393-39312412 | MS.gene20407:CDS | 60.0% | |
| GGTGGCTGGGTTCCCCCAAT+TGG | - | chr6.4:39312882-39312901 | None:intergenic | 65.0% | |
| GTGTTGTCCTGTGGCAGGGG+TGG | - | chr6.4:39312900-39312919 | None:intergenic | 65.0% | |
| AACCCAGCCACCCCTGCCAC+AGG | + | chr6.4:39312890-39312909 | MS.gene20407:CDS | 70.0% | |
| GTCCTGTGGCAGGGGTGGCT+GGG | - | chr6.4:39312895-39312914 | None:intergenic | 70.0% | |
| TGTCCTGTGGCAGGGGTGGC+TGG | - | chr6.4:39312896-39312915 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 39310868 | 39313121 | 39310868 | ID=MS.gene20407 |
| chr6.4 | mRNA | 39310868 | 39313121 | 39310868 | ID=MS.gene20407.t1;Parent=MS.gene20407 |
| chr6.4 | exon | 39310868 | 39310870 | 39310868 | ID=MS.gene20407.t1.exon1;Parent=MS.gene20407.t1 |
| chr6.4 | CDS | 39310868 | 39310870 | 39310868 | ID=cds.MS.gene20407.t1;Parent=MS.gene20407.t1 |
| chr6.4 | exon | 39311136 | 39311294 | 39311136 | ID=MS.gene20407.t1.exon2;Parent=MS.gene20407.t1 |
| chr6.4 | CDS | 39311136 | 39311294 | 39311136 | ID=cds.MS.gene20407.t1;Parent=MS.gene20407.t1 |
| chr6.4 | exon | 39311386 | 39311446 | 39311386 | ID=MS.gene20407.t1.exon3;Parent=MS.gene20407.t1 |
| chr6.4 | CDS | 39311386 | 39311446 | 39311386 | ID=cds.MS.gene20407.t1;Parent=MS.gene20407.t1 |
| chr6.4 | exon | 39311543 | 39311619 | 39311543 | ID=MS.gene20407.t1.exon4;Parent=MS.gene20407.t1 |
| chr6.4 | CDS | 39311543 | 39311619 | 39311543 | ID=cds.MS.gene20407.t1;Parent=MS.gene20407.t1 |
| chr6.4 | exon | 39311943 | 39311987 | 39311943 | ID=MS.gene20407.t1.exon5;Parent=MS.gene20407.t1 |
| chr6.4 | CDS | 39311943 | 39311987 | 39311943 | ID=cds.MS.gene20407.t1;Parent=MS.gene20407.t1 |
| chr6.4 | exon | 39312316 | 39312489 | 39312316 | ID=MS.gene20407.t1.exon6;Parent=MS.gene20407.t1 |
| chr6.4 | CDS | 39312316 | 39312489 | 39312316 | ID=cds.MS.gene20407.t1;Parent=MS.gene20407.t1 |
| chr6.4 | exon | 39312600 | 39313121 | 39312600 | ID=MS.gene20407.t1.exon7;Parent=MS.gene20407.t1 |
| chr6.4 | CDS | 39312600 | 39313121 | 39312600 | ID=cds.MS.gene20407.t1;Parent=MS.gene20407.t1 |
| Gene Sequence |
| Protein sequence |
