Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21172.t1 | XP_003611304.2 | 97.8 | 540 | 12 | 0 | 1 | 540 | 1 | 540 | 2.70E-298 | 1033.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21172.t1 | Q39079 | 63.5 | 526 | 189 | 1 | 10 | 535 | 13 | 535 | 1.4e-186 | 654.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21172.t1 | G7JW29 | 97.8 | 540 | 12 | 0 | 1 | 540 | 1 | 540 | 1.9e-298 | 1033.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050885 | MS.gene21172 | 0.825486 | 4.57E-54 | -1.69E-46 |
| MS.gene051597 | MS.gene21172 | 0.83337 | 5.55E-56 | -1.69E-46 |
| MS.gene05188 | MS.gene21172 | 0.836006 | 1.20E-56 | -1.69E-46 |
| MS.gene051975 | MS.gene21172 | 0.804782 | 1.83E-49 | -1.69E-46 |
| MS.gene053058 | MS.gene21172 | 0.804206 | 2.41E-49 | -1.69E-46 |
| MS.gene053963 | MS.gene21172 | 0.813231 | 2.84E-51 | -1.69E-46 |
| MS.gene054328 | MS.gene21172 | 0.805118 | 1.56E-49 | -1.69E-46 |
| MS.gene055603 | MS.gene21172 | 0.819653 | 1.04E-52 | -1.69E-46 |
| MS.gene055808 | MS.gene21172 | 0.80621 | 9.19E-50 | -1.69E-46 |
| MS.gene056091 | MS.gene21172 | 0.828505 | 8.66E-55 | -1.69E-46 |
| MS.gene056403 | MS.gene21172 | 0.908665 | 1.33E-81 | -1.69E-46 |
| MS.gene056605 | MS.gene21172 | 0.915604 | 4.83E-85 | -1.69E-46 |
| MS.gene05689 | MS.gene21172 | 0.83386 | 4.18E-56 | -1.69E-46 |
| MS.gene056986 | MS.gene21172 | 0.824422 | 8.14E-54 | -1.69E-46 |
| MS.gene05781 | MS.gene21172 | 0.814311 | 1.64E-51 | -1.69E-46 |
| MS.gene057999 | MS.gene21172 | 0.803472 | 3.43E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene21172 | 0.806877 | 6.64E-50 | -1.69E-46 |
| MS.gene059146 | MS.gene21172 | 0.809808 | 1.58E-50 | -1.69E-46 |
| MS.gene059830 | MS.gene21172 | 0.802302 | 5.98E-49 | -1.69E-46 |
| MS.gene059935 | MS.gene21172 | 0.846023 | 2.82E-59 | -1.69E-46 |
| MS.gene06011 | MS.gene21172 | 0.837781 | 4.24E-57 | -1.69E-46 |
| MS.gene060586 | MS.gene21172 | 0.817886 | 2.61E-52 | -1.69E-46 |
| MS.gene060763 | MS.gene21172 | 0.829171 | 5.98E-55 | -1.69E-46 |
| MS.gene060830 | MS.gene21172 | 0.891936 | 2.52E-74 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene21172 | MS.gene064737 | PPI |
| MS.gene21172 | MS.gene69422 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21172.t1 | MTR_5g012530 | 97.778 | 540 | 12 | 0 | 1 | 540 | 1 | 540 | 0.0 | 1103 |
| MS.gene21172.t1 | MTR_4g078850 | 47.297 | 74 | 37 | 1 | 12 | 85 | 4 | 75 | 1.14e-15 | 79.0 |
| MS.gene21172.t1 | MTR_2g014480 | 46.753 | 77 | 39 | 1 | 12 | 88 | 4 | 78 | 1.29e-15 | 78.6 |
| MS.gene21172.t1 | MTR_2g014470 | 48.649 | 74 | 36 | 1 | 12 | 85 | 4 | 75 | 1.96e-15 | 78.2 |
| MS.gene21172.t1 | MTR_4g015840 | 47.297 | 74 | 37 | 1 | 12 | 85 | 4 | 75 | 6.01e-15 | 76.6 |
| MS.gene21172.t1 | MTR_8g006430 | 45.000 | 80 | 37 | 1 | 9 | 88 | 11 | 83 | 1.82e-14 | 75.9 |
| MS.gene21172.t1 | MTR_2g090705 | 45.946 | 74 | 38 | 1 | 12 | 85 | 4 | 75 | 6.07e-14 | 73.6 |
| MS.gene21172.t1 | MTR_5g004570 | 45.977 | 87 | 38 | 3 | 12 | 97 | 6 | 84 | 1.46e-13 | 71.2 |
| MS.gene21172.t1 | MTR_5g065860 | 43.662 | 71 | 37 | 1 | 11 | 81 | 47 | 114 | 1.84e-13 | 68.2 |
| MS.gene21172.t1 | MTR_1g110310 | 48.684 | 76 | 36 | 1 | 11 | 86 | 15 | 87 | 2.41e-13 | 72.4 |
| MS.gene21172.t1 | MTR_7g109340 | 48.000 | 75 | 36 | 2 | 11 | 85 | 25 | 96 | 2.94e-13 | 71.6 |
| MS.gene21172.t1 | MTR_3g087030 | 44.595 | 74 | 37 | 1 | 12 | 85 | 82 | 151 | 4.51e-13 | 71.6 |
| MS.gene21172.t1 | MTR_3g108020 | 43.243 | 74 | 40 | 1 | 12 | 85 | 4 | 75 | 1.19e-12 | 69.7 |
| MS.gene21172.t1 | MTR_2g008520 | 37.719 | 114 | 58 | 3 | 4 | 116 | 47 | 148 | 1.52e-12 | 66.6 |
| MS.gene21172.t1 | MTR_2g008540 | 37.719 | 114 | 58 | 3 | 4 | 116 | 47 | 148 | 1.52e-12 | 66.6 |
| MS.gene21172.t1 | MTR_2g104030 | 40.741 | 81 | 44 | 1 | 12 | 92 | 70 | 146 | 6.33e-12 | 68.2 |
| MS.gene21172.t1 | MTR_8g022310 | 42.254 | 71 | 38 | 1 | 11 | 78 | 9 | 79 | 1.45e-11 | 64.3 |
| MS.gene21172.t1 | MTR_8g022310 | 42.254 | 71 | 38 | 1 | 11 | 78 | 9 | 79 | 1.53e-11 | 63.9 |
| MS.gene21172.t1 | MTR_8g022310 | 42.254 | 71 | 38 | 1 | 11 | 78 | 9 | 79 | 1.60e-11 | 64.7 |
| MS.gene21172.t1 | MTR_8g022310 | 42.857 | 70 | 37 | 1 | 12 | 78 | 10 | 79 | 1.83e-11 | 63.9 |
| MS.gene21172.t1 | MTR_3g437850 | 38.158 | 76 | 46 | 1 | 12 | 87 | 2 | 76 | 3.11e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21172.t1 | AT2G35720 | 63.498 | 526 | 189 | 1 | 10 | 535 | 13 | 535 | 0.0 | 696 |
| MS.gene21172.t1 | AT3G47940 | 48.052 | 77 | 37 | 2 | 12 | 87 | 4 | 78 | 1.05e-16 | 82.0 |
| MS.gene21172.t1 | AT1G59725 | 45.946 | 74 | 37 | 2 | 12 | 84 | 4 | 75 | 3.01e-16 | 80.5 |
| MS.gene21172.t1 | AT4G28480 | 45.455 | 77 | 40 | 1 | 12 | 88 | 4 | 78 | 2.13e-15 | 77.4 |
| MS.gene21172.t1 | AT2G20560 | 46.753 | 77 | 39 | 1 | 12 | 88 | 4 | 78 | 2.88e-15 | 77.8 |
| MS.gene21172.t1 | AT1G10350 | 44.000 | 75 | 40 | 1 | 12 | 86 | 4 | 76 | 3.70e-15 | 77.4 |
| MS.gene21172.t1 | AT4G28480 | 45.455 | 77 | 40 | 1 | 12 | 88 | 4 | 78 | 4.44e-15 | 77.4 |
| MS.gene21172.t1 | AT5G01390 | 45.205 | 73 | 38 | 1 | 12 | 84 | 4 | 74 | 5.07e-15 | 75.1 |
| MS.gene21172.t1 | AT5G01390 | 45.205 | 73 | 38 | 1 | 12 | 84 | 4 | 74 | 6.85e-15 | 74.7 |
| MS.gene21172.t1 | AT5G01390 | 45.205 | 73 | 38 | 1 | 12 | 84 | 4 | 74 | 9.16e-15 | 75.1 |
| MS.gene21172.t1 | AT3G08910 | 45.333 | 75 | 39 | 1 | 12 | 86 | 4 | 76 | 1.04e-14 | 75.9 |
| MS.gene21172.t1 | AT5G25530 | 44.444 | 81 | 43 | 1 | 12 | 92 | 4 | 82 | 1.31e-14 | 75.9 |
| MS.gene21172.t1 | AT5G01390 | 45.205 | 73 | 38 | 1 | 12 | 84 | 4 | 74 | 1.57e-14 | 75.5 |
| MS.gene21172.t1 | AT2G33735 | 42.857 | 70 | 37 | 1 | 8 | 77 | 18 | 84 | 8.50e-14 | 68.6 |
| MS.gene21172.t1 | AT2G33735 | 42.857 | 70 | 37 | 1 | 8 | 77 | 18 | 84 | 8.50e-14 | 68.6 |
| MS.gene21172.t1 | AT1G80030 | 45.333 | 75 | 37 | 1 | 12 | 86 | 75 | 145 | 7.23e-13 | 71.2 |
| MS.gene21172.t1 | AT1G80030 | 45.333 | 75 | 37 | 1 | 12 | 86 | 75 | 145 | 7.63e-13 | 71.2 |
| MS.gene21172.t1 | AT1G80030 | 45.333 | 75 | 37 | 1 | 12 | 86 | 75 | 145 | 7.63e-13 | 71.2 |
| MS.gene21172.t1 | AT1G80030 | 45.333 | 75 | 37 | 1 | 12 | 86 | 75 | 145 | 7.63e-13 | 71.2 |
| MS.gene21172.t1 | AT5G16650 | 41.250 | 80 | 44 | 1 | 2 | 81 | 1 | 77 | 9.63e-13 | 65.9 |
| MS.gene21172.t1 | AT3G62600 | 45.333 | 75 | 38 | 1 | 11 | 85 | 25 | 96 | 1.11e-12 | 69.7 |
| MS.gene21172.t1 | AT3G14200 | 43.590 | 78 | 44 | 0 | 1 | 78 | 1 | 78 | 1.53e-12 | 67.8 |
| MS.gene21172.t1 | AT2G21510 | 50.000 | 74 | 34 | 2 | 12 | 85 | 6 | 76 | 2.34e-12 | 68.9 |
| MS.gene21172.t1 | AT2G21510 | 50.000 | 74 | 34 | 2 | 12 | 85 | 6 | 76 | 2.34e-12 | 68.9 |
| MS.gene21172.t1 | AT2G21510 | 50.000 | 74 | 34 | 2 | 12 | 85 | 6 | 76 | 2.62e-12 | 68.9 |
| MS.gene21172.t1 | AT2G21510 | 50.000 | 74 | 34 | 2 | 12 | 85 | 6 | 76 | 2.62e-12 | 68.9 |
| MS.gene21172.t1 | AT2G21510 | 50.000 | 74 | 34 | 2 | 12 | 85 | 6 | 76 | 3.50e-12 | 68.2 |
| MS.gene21172.t1 | AT5G16650 | 41.250 | 80 | 44 | 1 | 2 | 81 | 1 | 77 | 3.52e-12 | 65.5 |
| MS.gene21172.t1 | AT2G22360 | 39.506 | 81 | 45 | 1 | 12 | 92 | 86 | 162 | 3.84e-12 | 68.9 |
| MS.gene21172.t1 | AT4G39960 | 42.857 | 77 | 38 | 2 | 10 | 85 | 83 | 154 | 4.46e-12 | 68.6 |
| MS.gene21172.t1 | AT4G39960 | 42.857 | 77 | 38 | 2 | 10 | 85 | 83 | 154 | 4.46e-12 | 68.6 |
| MS.gene21172.t1 | AT1G68370 | 43.210 | 81 | 42 | 2 | 11 | 90 | 16 | 93 | 8.00e-12 | 67.8 |
| MS.gene21172.t1 | AT1G59980 | 43.210 | 81 | 43 | 2 | 4 | 84 | 15 | 92 | 1.17e-11 | 67.0 |
| MS.gene21172.t1 | AT1G21080 | 45.455 | 77 | 39 | 2 | 12 | 88 | 6 | 79 | 1.66e-11 | 66.6 |
| MS.gene21172.t1 | AT1G21080 | 45.455 | 77 | 39 | 2 | 12 | 88 | 6 | 79 | 1.68e-11 | 66.6 |
| MS.gene21172.t1 | AT1G59980 | 43.210 | 81 | 43 | 2 | 4 | 84 | 15 | 92 | 1.70e-11 | 66.6 |
| MS.gene21172.t1 | AT4G39150 | 48.649 | 74 | 35 | 2 | 12 | 85 | 6 | 76 | 6.17e-11 | 64.7 |
| MS.gene21172.t1 | AT4G39150 | 48.649 | 74 | 35 | 2 | 12 | 85 | 6 | 76 | 6.17e-11 | 64.7 |
| MS.gene21172.t1 | AT4G39150 | 48.649 | 74 | 35 | 2 | 12 | 85 | 6 | 76 | 6.17e-11 | 64.7 |
| MS.gene21172.t1 | AT1G72416 | 35.443 | 79 | 49 | 1 | 12 | 88 | 5 | 83 | 8.63e-11 | 61.6 |
| MS.gene21172.t1 | AT1G72416 | 35.443 | 79 | 49 | 1 | 12 | 88 | 5 | 83 | 8.98e-11 | 61.6 |
| MS.gene21172.t1 | AT1G72416 | 35.443 | 79 | 49 | 1 | 12 | 88 | 5 | 83 | 9.31e-11 | 61.6 |
Find 123 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGACAGGTTTATGATATTTA+TGG | 0.168325 | 5.1:-5753136 | MS.gene21172:CDS |
| GCCGGTTTACGTTCACTAAT+TGG | 0.209362 | 5.1:-5751709 | MS.gene21172:CDS |
| TCAATCTTCCGGGACGATTT+TGG | 0.212595 | 5.1:-5752993 | MS.gene21172:CDS |
| CATCTTTCATGAGAGGATTT+TGG | 0.213944 | 5.1:+5753221 | None:intergenic |
| TTAAACCGTATTACCTTAAA+AGG | 0.228193 | 5.1:-5746751 | MS.gene21172:CDS |
| GGCTGCATTGGAGGAAGATT+TGG | 0.245321 | 5.1:-5750568 | MS.gene21172:CDS |
| CCAGCGCACAGTACTGAATT+TGG | 0.281518 | 5.1:+5749198 | None:intergenic |
| GATTTCTTCGTCGGAGGATT+CGG | 0.296432 | 5.1:+5753291 | None:intergenic |
| GATGGTGACGGTCTCTTTAG+AGG | 0.353128 | 5.1:-5752944 | MS.gene21172:CDS |
| TTTATATCCTGTGGATGCCC+TGG | 0.364969 | 5.1:+5743567 | None:intergenic |
| TTGAAATCTGGTTTGGAACT+TGG | 0.365381 | 5.1:-5753103 | MS.gene21172:CDS |
| AACAACTTGTATTCGTCAAA+TGG | 0.369969 | 5.1:-5745385 | MS.gene21172:CDS |
| GGTATGGAAGGATTGAAATC+TGG | 0.376748 | 5.1:-5753115 | MS.gene21172:CDS |
| TCATAAACCTGTCTCTTATT+CGG | 0.380932 | 5.1:+5753145 | None:intergenic |
| TCCAATTAGTGAACGTAAAC+CGG | 0.384708 | 5.1:+5751708 | None:intergenic |
| GGAAGGATTGAAATCTGGTT+TGG | 0.386145 | 5.1:-5753110 | MS.gene21172:CDS |
| TAATGATTCTGGTCAACTTA+AGG | 0.387282 | 5.1:-5745302 | MS.gene21172:intron |
| TGGAGAGGTTGAAGAGAAGA+AGG | 0.387919 | 5.1:-5753042 | MS.gene21172:CDS |
| TACAACAAAATGTAGCTAAT+AGG | 0.392977 | 5.1:-5745480 | MS.gene21172:CDS |
| ATTTCTTCGTCGGAGGATTC+GGG | 0.394666 | 5.1:+5753292 | None:intergenic |
| GCTGCATTGGAGGAAGATTT+GGG | 0.396220 | 5.1:-5750567 | MS.gene21172:CDS |
| TCCGCAAAGCTTATCGTCAA+TGG | 0.396259 | 5.1:-5753270 | MS.gene21172:CDS |
| GTTGTATGTAGTAGGACTTC+AGG | 0.398493 | 5.1:-5749176 | MS.gene21172:intron |
| CCCATTGACGATAAGCTTTG+CGG | 0.402719 | 5.1:+5753269 | None:intergenic |
| TTATATCCTGTGGATGCCCT+GGG | 0.405887 | 5.1:+5743568 | None:intergenic |
| CATTTGTTGTTTCTGACAGC+TGG | 0.407604 | 5.1:+5751492 | None:intergenic |
| CACGAAGGTGTAAAGAAATC+AGG | 0.413837 | 5.1:-5743803 | MS.gene21172:CDS |
| TAATACCTTGTGTTGATTGC+CGG | 0.416603 | 5.1:+5743715 | None:intergenic |
| CGAAATGTTGTTGGGATTGG+CGG | 0.418527 | 5.1:-5751829 | MS.gene21172:CDS |
| TGTAAAGAAATCAGGAATCA+TGG | 0.420936 | 5.1:-5743795 | MS.gene21172:CDS |
| AGGATTCGGGTGAGAGGTTG+AGG | 0.426031 | 5.1:+5753305 | None:intergenic |
| TTGAACCCTATGTTTGCTAC+TGG | 0.427445 | 5.1:-5747442 | MS.gene21172:CDS |
| TACAACAGTTTAGTTTCTCC+TGG | 0.432887 | 5.1:+5743755 | None:intergenic |
| TGTCAAAACGAAATGTTGTT+GGG | 0.434109 | 5.1:-5751837 | MS.gene21172:CDS |
| GTTGTTATGAAAGCGCTATA+TGG | 0.436734 | 5.1:-5745424 | MS.gene21172:CDS |
| AAATCTCATGGCTGCATTGG+AGG | 0.439365 | 5.1:-5750577 | MS.gene21172:CDS |
| CGTTGAATCTTTCTAATGCA+TGG | 0.443709 | 5.1:-5751520 | MS.gene21172:CDS |
| TTGTCAAAACGAAATGTTGT+TGG | 0.453469 | 5.1:-5751838 | MS.gene21172:CDS |
| GGCGGCAATTTAGCAGTTGA+AGG | 0.457018 | 5.1:-5751811 | MS.gene21172:CDS |
| AAGAAGGGAACATGAGAAGA+TGG | 0.457897 | 5.1:-5753026 | MS.gene21172:CDS |
| CTGGTTTGGAACTTGGTTCG+AGG | 0.462985 | 5.1:-5753096 | MS.gene21172:CDS |
| AAACGAAATGTTGTTGGGAT+TGG | 0.467280 | 5.1:-5751832 | MS.gene21172:CDS |
| GGTTTATGATATTTATGGTA+TGG | 0.473781 | 5.1:-5753131 | MS.gene21172:CDS |
| AAGAAACAAGCAATTAGAAA+CGG | 0.479082 | 5.1:-5745455 | MS.gene21172:CDS |
| TCTAAATCTCATGGCTGCAT+TGG | 0.480181 | 5.1:-5750580 | MS.gene21172:CDS |
| AGAAACAAGCAATTAGAAAC+GGG | 0.485283 | 5.1:-5745454 | MS.gene21172:CDS |
| TTCAGATCCGAATAAGAGAC+AGG | 0.488853 | 5.1:-5753152 | MS.gene21172:CDS |
| CCGCAAAGCTTATCGTCAAT+GGG | 0.491774 | 5.1:-5753269 | MS.gene21172:CDS |
| TAATATTTCTTTATATCCTG+TGG | 0.491894 | 5.1:+5743558 | None:intergenic |
| TATGATATTTATGGTATGGA+AGG | 0.492093 | 5.1:-5753127 | MS.gene21172:CDS |
| TTTCAGATACAACTCATGTT+GGG | 0.497567 | 5.1:-5750957 | MS.gene21172:intron |
| TGTTGTTTCTGACAGCTGGC+GGG | 0.500265 | 5.1:+5751496 | None:intergenic |
| TCTTCCATTGAGATGGAAGT+TGG | 0.502607 | 5.1:-5749238 | MS.gene21172:CDS |
| AGCTTTGCGGATTTCTTCGT+CGG | 0.502755 | 5.1:+5753282 | None:intergenic |
| GGAAGAAAGAAGACGAGAAA+AGG | 0.504085 | 5.1:-5750908 | MS.gene21172:CDS |
| TTAACAATGTCTTTGAGAGA+TGG | 0.505493 | 5.1:-5751545 | MS.gene21172:CDS |
| TCTGTGCCGCAGTATTTAGA+TGG | 0.507210 | 5.1:-5752962 | MS.gene21172:CDS |
| GCAATTAGAAACGGGTGGAC+TGG | 0.509279 | 5.1:-5745446 | MS.gene21172:CDS |
| ACCACCAACTTCCATCTCAA+TGG | 0.513249 | 5.1:+5749234 | None:intergenic |
| AGAACAAAGTAAAACGATGC+TGG | 0.514699 | 5.1:+5747406 | None:intergenic |
| TTTGGAACTTGGTTCGAGGT+TGG | 0.521456 | 5.1:-5753092 | MS.gene21172:CDS |
| GGAGAGGTTGAAGAGAAGAA+GGG | 0.521692 | 5.1:-5753041 | MS.gene21172:CDS |
| TGGAGATTTGAATTCTGTCG+TGG | 0.521929 | 5.1:-5748256 | MS.gene21172:CDS |
| ATTTCAGATACAACTCATGT+TGG | 0.526912 | 5.1:-5750958 | MS.gene21172:intron |
| CAACTCCTTTAGCTCGGCAC+AGG | 0.529594 | 5.1:-5750643 | MS.gene21172:intron |
| GGAGATTTGAATTCTGTCGT+GGG | 0.529795 | 5.1:-5748255 | MS.gene21172:CDS |
| AGATTAAAGCCGAGTTGGAG+AGG | 0.534621 | 5.1:-5753057 | MS.gene21172:CDS |
| GTAAAGAAATCAGGAATCAT+GGG | 0.535679 | 5.1:-5743794 | MS.gene21172:CDS |
| ACGACAGAATTCAAATCTCC+AGG | 0.537158 | 5.1:+5748258 | None:intergenic |
| TCCATTGAGATGGAAGTTGG+TGG | 0.539674 | 5.1:-5749235 | MS.gene21172:CDS |
| ATAGAATTTATTGCTTCAGC+CGG | 0.541957 | 5.1:-5751727 | MS.gene21172:CDS |
| TCTCTTCAACCTCTCCAACT+CGG | 0.543108 | 5.1:+5753048 | None:intergenic |
| TTGTTGTTTCTGACAGCTGG+CGG | 0.544720 | 5.1:+5751495 | None:intergenic |
| CCAAATTCAGTACTGTGCGC+TGG | 0.546174 | 5.1:-5749198 | MS.gene21172:CDS |
| TGAAGAGATTAAAGCCGAGT+TGG | 0.546959 | 5.1:-5753062 | MS.gene21172:CDS |
| ATTAAGTCATCAACTTTCTG+AGG | 0.548247 | 5.1:-5751758 | MS.gene21172:CDS |
| TCACAACCATCTGTAGCTGT+AGG | 0.549045 | 5.1:-5750933 | MS.gene21172:CDS |
| CAGCTGTCAGAAACAACAAA+TGG | 0.555163 | 5.1:-5751491 | MS.gene21172:CDS |
| GTTGAAGGACATCAAGGTGG+TGG | 0.555707 | 5.1:-5751796 | MS.gene21172:CDS |
| GACTGCCACTGCAGATGTGA+AGG | 0.563742 | 5.1:-5750886 | MS.gene21172:intron |
| TCACACTCATCTGCAACAGC+AGG | 0.565108 | 5.1:-5751569 | MS.gene21172:CDS |
| GCAGAAGGCTCTAGAGAAGG+AGG | 0.565595 | 5.1:-5746723 | MS.gene21172:CDS |
| TTAGCAGTTGAAGGACATCA+AGG | 0.567675 | 5.1:-5751802 | MS.gene21172:CDS |
| TTGTGCAGGTTCAAGAAGCA+AGG | 0.572071 | 5.1:-5745528 | MS.gene21172:intron |
| AGTTTAGTTTCTCCTGGACA+AGG | 0.572083 | 5.1:+5743761 | None:intergenic |
| CACAACCATCTGTAGCTGTA+GGG | 0.573415 | 5.1:-5750932 | MS.gene21172:CDS |
| TTCCACCCTACAGCTACAGA+TGG | 0.578527 | 5.1:+5750927 | None:intergenic |
| ATGGTGACGGTCTCTTTAGA+GGG | 0.579960 | 5.1:-5752943 | MS.gene21172:intron |
| AGATGGAAGTTGGTGGTGGA+AGG | 0.580738 | 5.1:-5749228 | MS.gene21172:CDS |
| ATTGAGATGGAAGTTGGTGG+TGG | 0.583627 | 5.1:-5749232 | MS.gene21172:CDS |
| TTTGCGGATTTCTTCGTCGG+AGG | 0.586012 | 5.1:+5753285 | None:intergenic |
| GTGCGCTGGTTGTATGTAGT+AGG | 0.589823 | 5.1:-5749184 | MS.gene21172:CDS |
| CGTCGGAGGATTCGGGTGAG+AGG | 0.591705 | 5.1:+5753299 | None:intergenic |
| GAGATTTGAATTCTGTCGTG+GGG | 0.593603 | 5.1:-5748254 | MS.gene21172:CDS |
| TATGTAGAGTACGCTCATGC+CGG | 0.594747 | 5.1:-5743734 | MS.gene21172:CDS |
| AACGCTCCAGTAGCAAACAT+AGG | 0.595428 | 5.1:+5747436 | None:intergenic |
| CCGCAGTATTTAGATGGTGA+CGG | 0.596124 | 5.1:-5752956 | MS.gene21172:CDS |
| ACGCTCCAGTAGCAAACATA+GGG | 0.598281 | 5.1:+5747437 | None:intergenic |
| GTGGCAGCATCTTTCATGAG+AGG | 0.598579 | 5.1:+5753214 | None:intergenic |
| TGATACCCCAGGGCATCCAC+AGG | 0.599069 | 5.1:-5743574 | MS.gene21172:CDS |
| CAAATTAGCCAAAATCGTCC+CGG | 0.603920 | 5.1:+5752985 | None:intergenic |
| AACCATCTGTAGCTGTAGGG+TGG | 0.613280 | 5.1:-5750929 | MS.gene21172:CDS |
| TAAGCAGAAGGCTCTAGAGA+AGG | 0.614702 | 5.1:-5746726 | MS.gene21172:CDS |
| CCTTAAAAGGAATAAGCAGA+AGG | 0.619877 | 5.1:-5746738 | MS.gene21172:CDS |
| TGAACAATTAGTGATACCCC+AGG | 0.624180 | 5.1:-5743585 | MS.gene21172:CDS |
| TGTGCAGGTTCAAGAAGCAA+GGG | 0.640879 | 5.1:-5745527 | MS.gene21172:intron |
| TACCGAGCTGATGTCTCGAA+AGG | 0.642389 | 5.1:+5750619 | None:intergenic |
| TAATTGGAGTGCAGACATCA+CGG | 0.643892 | 5.1:-5751693 | MS.gene21172:intron |
| AACAAGCAATTAGAAACGGG+TGG | 0.644799 | 5.1:-5745451 | MS.gene21172:CDS |
| AAGTACCTTCACATCTGCAG+TGG | 0.655070 | 5.1:+5750881 | None:intergenic |
| CAGAAGGCTCTAGAGAAGGA+GGG | 0.666625 | 5.1:-5746722 | MS.gene21172:CDS |
| TCATGCCGGCAATCAACACA+AGG | 0.679169 | 5.1:-5743720 | MS.gene21172:intron |
| TATATCCTGTGGATGCCCTG+GGG | 0.680955 | 5.1:+5743569 | None:intergenic |
| GTCCTTTCGAGACATCAGCT+CGG | 0.682396 | 5.1:-5750621 | MS.gene21172:CDS |
| AAGGGAACATGAGAAGATGG+TGG | 0.692220 | 5.1:-5753023 | MS.gene21172:CDS |
| AGATTTGAATTCTGTCGTGG+GGG | 0.694309 | 5.1:-5748253 | MS.gene21172:CDS |
| TCATTAACTAGAAAATTCAG+AGG | 0.697331 | 5.1:+5745319 | None:intergenic |
| GAACAATTAGTGATACCCCA+GGG | 0.697876 | 5.1:-5743584 | MS.gene21172:CDS |
| GCAGTTGAAGGACATCAAGG+TGG | 0.714956 | 5.1:-5751799 | MS.gene21172:CDS |
| TTGTTGATGCAGCTTCACGA+AGG | 0.717990 | 5.1:-5743818 | MS.gene21172:intron |
| AACTCGTTGAAAATTCTCAG+TGG | 0.720687 | 5.1:+5753195 | None:intergenic |
| GCATTGGAGGAAGATTTGGG+AGG | 0.723138 | 5.1:-5750564 | MS.gene21172:intron |
| CCGTCACCATCTAAATACTG+CGG | 0.736185 | 5.1:+5752956 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 5743568 | 5753374 | 5743568 | ID=MS.gene21172 |
| chr5.1 | mRNA | 5743568 | 5753374 | 5743568 | ID=MS.gene21172.t1;Parent=MS.gene21172 |
| chr5.1 | exon | 5752944 | 5753374 | 5752944 | ID=MS.gene21172.t1.exon1;Parent=MS.gene21172.t1 |
| chr5.1 | CDS | 5752944 | 5753374 | 5752944 | ID=cds.MS.gene21172.t1;Parent=MS.gene21172.t1 |
| chr5.1 | exon | 5751694 | 5751891 | 5751694 | ID=MS.gene21172.t1.exon2;Parent=MS.gene21172.t1 |
| chr5.1 | CDS | 5751694 | 5751891 | 5751694 | ID=cds.MS.gene21172.t1;Parent=MS.gene21172.t1 |
| chr5.1 | exon | 5751487 | 5751601 | 5751487 | ID=MS.gene21172.t1.exon3;Parent=MS.gene21172.t1 |
| chr5.1 | CDS | 5751487 | 5751601 | 5751487 | ID=cds.MS.gene21172.t1;Parent=MS.gene21172.t1 |
| chr5.1 | exon | 5750887 | 5750973 | 5750887 | ID=MS.gene21172.t1.exon4;Parent=MS.gene21172.t1 |
| chr5.1 | CDS | 5750887 | 5750973 | 5750887 | ID=cds.MS.gene21172.t1;Parent=MS.gene21172.t1 |
| chr5.1 | exon | 5750565 | 5750653 | 5750565 | ID=MS.gene21172.t1.exon5;Parent=MS.gene21172.t1 |
| chr5.1 | CDS | 5750565 | 5750653 | 5750565 | ID=cds.MS.gene21172.t1;Parent=MS.gene21172.t1 |
| chr5.1 | exon | 5749177 | 5749261 | 5749177 | ID=MS.gene21172.t1.exon6;Parent=MS.gene21172.t1 |
| chr5.1 | CDS | 5749177 | 5749261 | 5749177 | ID=cds.MS.gene21172.t1;Parent=MS.gene21172.t1 |
| chr5.1 | exon | 5748234 | 5748287 | 5748234 | ID=MS.gene21172.t1.exon7;Parent=MS.gene21172.t1 |
| chr5.1 | CDS | 5748234 | 5748287 | 5748234 | ID=cds.MS.gene21172.t1;Parent=MS.gene21172.t1 |
| chr5.1 | exon | 5747402 | 5747482 | 5747402 | ID=MS.gene21172.t1.exon8;Parent=MS.gene21172.t1 |
| chr5.1 | CDS | 5747402 | 5747482 | 5747402 | ID=cds.MS.gene21172.t1;Parent=MS.gene21172.t1 |
| chr5.1 | exon | 5746706 | 5746783 | 5746706 | ID=MS.gene21172.t1.exon9;Parent=MS.gene21172.t1 |
| chr5.1 | CDS | 5746706 | 5746783 | 5746706 | ID=cds.MS.gene21172.t1;Parent=MS.gene21172.t1 |
| chr5.1 | exon | 5745303 | 5745542 | 5745303 | ID=MS.gene21172.t1.exon10;Parent=MS.gene21172.t1 |
| chr5.1 | CDS | 5745303 | 5745542 | 5745303 | ID=cds.MS.gene21172.t1;Parent=MS.gene21172.t1 |
| chr5.1 | exon | 5743721 | 5743828 | 5743721 | ID=MS.gene21172.t1.exon11;Parent=MS.gene21172.t1 |
| chr5.1 | CDS | 5743721 | 5743828 | 5743721 | ID=cds.MS.gene21172.t1;Parent=MS.gene21172.t1 |
| chr5.1 | exon | 5743568 | 5743624 | 5743568 | ID=MS.gene21172.t1.exon12;Parent=MS.gene21172.t1 |
| chr5.1 | CDS | 5743568 | 5743624 | 5743568 | ID=cds.MS.gene21172.t1;Parent=MS.gene21172.t1 |
| Gene Sequence |
| Protein sequence |
