Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054328.t1 | XP_003619136.1 | 98 | 149 | 3 | 0 | 1 | 149 | 1 | 149 | 9.80E-77 | 296.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054328.t1 | Q8RWG8 | 74.1 | 143 | 37 | 0 | 6 | 148 | 11 | 153 | 7.1e-60 | 231.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054328.t1 | G7KIE5 | 98.0 | 149 | 3 | 0 | 1 | 149 | 1 | 149 | 7.1e-77 | 296.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054328 | MS.gene060763 | 0.825253 | 5.18E-54 | -1.69E-46 |
| MS.gene054328 | MS.gene072213 | 0.81712 | 3.89E-52 | -1.69E-46 |
| MS.gene054328 | MS.gene072280 | 0.814449 | 1.53E-51 | -1.69E-46 |
| MS.gene054328 | MS.gene072299 | 0.813647 | 2.30E-51 | -1.69E-46 |
| MS.gene054328 | MS.gene072716 | 0.851222 | 1.02E-60 | -1.69E-46 |
| MS.gene054328 | MS.gene08582 | 0.806846 | 6.75E-50 | -1.69E-46 |
| MS.gene054328 | MS.gene21172 | 0.805118 | 1.56E-49 | -1.69E-46 |
| MS.gene054328 | MS.gene24608 | 0.804728 | 1.88E-49 | -1.69E-46 |
| MS.gene054328 | MS.gene27921 | 0.805517 | 1.28E-49 | -1.69E-46 |
| MS.gene054328 | MS.gene28792 | 0.811472 | 6.88E-51 | -1.69E-46 |
| MS.gene054328 | MS.gene32419 | 0.802235 | 6.18E-49 | -1.69E-46 |
| MS.gene054328 | MS.gene38754 | 0.822689 | 2.07E-53 | -1.69E-46 |
| MS.gene054328 | MS.gene44023 | 0.801161 | 1.03E-48 | -1.69E-46 |
| MS.gene054328 | MS.gene47878 | 0.805268 | 1.45E-49 | -1.69E-46 |
| MS.gene054328 | MS.gene48368 | 0.810985 | 8.78E-51 | -1.69E-46 |
| MS.gene054328 | MS.gene56868 | 0.802949 | 4.40E-49 | -1.69E-46 |
| MS.gene054328 | MS.gene58719 | 0.824508 | 7.77E-54 | -1.69E-46 |
| MS.gene054328 | MS.gene59616 | 0.801816 | 7.53E-49 | -1.69E-46 |
| MS.gene054328 | MS.gene61136 | 0.803445 | 3.47E-49 | -1.69E-46 |
| MS.gene054328 | MS.gene61642 | 0.816722 | 4.78E-52 | -1.69E-46 |
| MS.gene054328 | MS.gene65295 | 0.808963 | 2.39E-50 | -1.69E-46 |
| MS.gene054328 | MS.gene68198 | 0.837556 | 4.85E-57 | -1.69E-46 |
| MS.gene054328 | MS.gene69611 | 0.809616 | 1.73E-50 | -1.69E-46 |
| MS.gene054328 | MS.gene71825 | 0.803409 | 3.53E-49 | -1.69E-46 |
| MS.gene054328 | MS.gene71826 | 0.811602 | 6.45E-51 | -1.69E-46 |
| MS.gene054328 | MS.gene72894 | 0.803703 | 3.07E-49 | -1.69E-46 |
| MS.gene054328 | MS.gene73234 | 0.840309 | 9.40E-58 | -1.69E-46 |
| MS.gene054328 | MS.gene73825 | 0.803525 | 3.34E-49 | -1.69E-46 |
| MS.gene054328 | MS.gene75187 | 0.812158 | 4.88E-51 | -1.69E-46 |
| MS.gene054328 | MS.gene80786 | 0.804046 | 2.61E-49 | -1.69E-46 |
| MS.gene054328 | MS.gene84677 | 0.818355 | 2.05E-52 | -1.69E-46 |
| MS.gene054328 | MS.gene85979 | 0.801896 | 7.25E-49 | -1.69E-46 |
| MS.gene054328 | MS.gene92970 | 0.812419 | 4.28E-51 | -1.69E-46 |
| MS.gene054328 | MS.gene95472 | 0.801883 | 7.30E-49 | -1.69E-46 |
| MS.gene054328 | MS.gene96508 | 0.812882 | 3.39E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054328.t1 | MTR_6g042530 | 93.750 | 224 | 10 | 1 | 1 | 224 | 1 | 220 | 2.72e-135 | 379 |
| MS.gene054328.t1 | MTR_1g097600 | 74.208 | 221 | 51 | 3 | 6 | 224 | 5 | 221 | 2.76e-110 | 315 |
| MS.gene054328.t1 | MTR_1g097600 | 80.272 | 147 | 28 | 1 | 6 | 151 | 5 | 151 | 1.40e-87 | 256 |
| MS.gene054328.t1 | MTR_3g034085 | 81.395 | 129 | 23 | 1 | 6 | 133 | 5 | 133 | 3.60e-76 | 227 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054328.t1 | AT2G30060 | 65.366 | 205 | 66 | 2 | 6 | 205 | 11 | 215 | 1.88e-90 | 265 |
| MS.gene054328.t1 | AT5G58590 | 72.093 | 172 | 47 | 1 | 8 | 178 | 10 | 181 | 1.18e-88 | 261 |
| MS.gene054328.t1 | AT1G07140 | 71.676 | 173 | 48 | 1 | 6 | 177 | 9 | 181 | 6.67e-87 | 256 |
Find 45 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGCTTTCCTCTTTATTC+AGG | 0.146603 | 6.1:+24083088 | None:intergenic |
| CTTCAACGCTCAAATTCTTA+AGG | 0.306134 | 6.1:+24083043 | None:intergenic |
| CTTGCTTTCCTCTTTATTCA+GGG | 0.373773 | 6.1:+24083089 | None:intergenic |
| GTTAGATAGCAGAAAGTTCA+TGG | 0.377162 | 6.1:-24083136 | MS.gene054328:intron |
| CTTAAGAATTTGAGCGTTGA+AGG | 0.385239 | 6.1:-24083042 | MS.gene054328:CDS |
| GATTCCCTTCCTTGTCAAAT+CGG | 0.395157 | 6.1:+24085992 | None:intergenic |
| ATAAGGTTACTGGAAAAGTT+AGG | 0.398775 | 6.1:-24085927 | MS.gene054328:CDS |
| GGAATGAGAAATCTTGTGTT+TGG | 0.452376 | 6.1:-24085426 | MS.gene054328:CDS |
| TCAATACTCACTGAGATGAT+TGG | 0.476949 | 6.1:+24085867 | None:intergenic |
| TGCTGAATCCCTGAATAAAG+AGG | 0.481374 | 6.1:-24083097 | MS.gene054328:CDS |
| CACGAAGTCGCTGTTTCCAC+TGG | 0.483068 | 6.1:-24086559 | MS.gene054328:CDS |
| TTGACAAGGAAGGGAATCAA+TGG | 0.490090 | 6.1:-24085987 | MS.gene054328:CDS |
| ATCTTCCTCTTCGTGATGAT+CGG | 0.492706 | 6.1:+24086639 | None:intergenic |
| CAATGGAAGGAACGAGGGGC+AGG | 0.498194 | 6.1:-24085970 | MS.gene054328:CDS |
| GCCGGTGTCTTCTTCATCGC+CGG | 0.504644 | 6.1:+24086609 | None:intergenic |
| GAAAACCGAGGAGAAAACTA+AGG | 0.512105 | 6.1:-24082977 | MS.gene054328:CDS |
| AAACAGCGACTTCGTGAAGT+TGG | 0.518653 | 6.1:+24086566 | None:intergenic |
| ATGACTGTGCAAGAGCATGC+TGG | 0.525554 | 6.1:-24085448 | MS.gene054328:CDS |
| GTGTCTTCTTCATCGCCGGC+GGG | 0.532371 | 6.1:+24086613 | None:intergenic |
| GAAAAGAAAGTCGAAGAGCC+TGG | 0.535131 | 6.1:-24082916 | MS.gene054328:CDS |
| TTCTTCATCTTCTTCACCAG+TGG | 0.541787 | 6.1:+24086543 | None:intergenic |
| TTAAGAATTTGAGCGTTGAA+GGG | 0.557314 | 6.1:-24083041 | MS.gene054328:CDS |
| ATCTTGTGTTTGGCACGCGA+AGG | 0.558670 | 6.1:-24085416 | MS.gene054328:CDS |
| CTGTACCGATTTGACAAGGA+AGG | 0.562348 | 6.1:-24085997 | MS.gene054328:CDS |
| GGTGTCTTCTTCATCGCCGG+CGG | 0.563701 | 6.1:+24086612 | None:intergenic |
| TGACTGTGCAAGAGCATGCT+GGG | 0.564943 | 6.1:-24085447 | MS.gene054328:CDS |
| CATAATCAAGCAGATGAACC+AGG | 0.570119 | 6.1:+24082898 | None:intergenic |
| GGAATCAATGGAAGGAACGA+GGG | 0.577810 | 6.1:-24085975 | MS.gene054328:CDS |
| GATCGGAGCGATTTGAGCGC+CGG | 0.581625 | 6.1:+24086591 | None:intergenic |
| CCTGAATAAAGAGGAAAGCA+AGG | 0.588948 | 6.1:-24083088 | MS.gene054328:CDS |
| CTTAAGGAGATCAGCAGCAG+TGG | 0.591678 | 6.1:+24083059 | None:intergenic |
| ACTTCGTGAAGTTGGATGAT+CGG | 0.594925 | 6.1:+24086574 | None:intergenic |
| ATGCAGAAAAGAAAGACGAA+GGG | 0.600557 | 6.1:-24083011 | MS.gene054328:CDS |
| GATGCAGAAAAGAAAGACGA+AGG | 0.601908 | 6.1:-24083012 | MS.gene054328:CDS |
| GGGAATCAATGGAAGGAACG+AGG | 0.609048 | 6.1:-24085976 | MS.gene054328:CDS |
| CACGCGAAGGACTTTGCTGA+TGG | 0.615394 | 6.1:-24085403 | MS.gene054328:CDS |
| GAAAGACGAAGGGAAATCTG+AGG | 0.620365 | 6.1:-24083001 | MS.gene054328:CDS |
| CAAGGAAGGGAATCAATGGA+AGG | 0.636394 | 6.1:-24085983 | MS.gene054328:CDS |
| GAATCAATGGAAGGAACGAG+GGG | 0.647994 | 6.1:-24085974 | MS.gene054328:CDS |
| TGTACCGATTTGACAAGGAA+GGG | 0.657438 | 6.1:-24085996 | MS.gene054328:CDS |
| GAAGAGGAAGATGTTCCCGC+CGG | 0.668991 | 6.1:-24086628 | MS.gene054328:CDS |
| AAGCACCGATCATCACGAAG+AGG | 0.672214 | 6.1:-24086644 | MS.gene054328:CDS |
| GAAACTGTACCGATTTGACA+AGG | 0.698764 | 6.1:-24086001 | MS.gene054328:CDS |
| GCCGGCGATGAAGAAGACAC+CGG | 0.712296 | 6.1:-24086610 | MS.gene054328:CDS |
| GAAATCTGAGGAGAAAACCG+AGG | 0.731128 | 6.1:-24082989 | MS.gene054328:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAAAATCACAAAAAA+CGG | + | chr6.1:24083306-24083325 | None:intergenic | 10.0% |
| !!! | ATTTTTATTTGATTTTTGAT+TGG | - | chr6.1:24084026-24084045 | MS.gene054328:intron | 10.0% |
| !!! | TTAAAATAGTTTATTTTAGA+TGG | - | chr6.1:24085819-24085838 | MS.gene054328:intron | 10.0% |
| !! | AAAAAATTACAACAAAAAAG+TGG | + | chr6.1:24083075-24083094 | None:intergenic | 15.0% |
| !! | ATAAGTTGTTTATTCAAATA+AGG | - | chr6.1:24084594-24084613 | MS.gene054328:intron | 15.0% |
| !! | TTATTTGAATAAACAACTTA+TGG | + | chr6.1:24084595-24084614 | None:intergenic | 15.0% |
| !! | TTGAATATGAAAAAAGAAAA+AGG | + | chr6.1:24084242-24084261 | None:intergenic | 15.0% |
| !!! | ATTTTTATTTTAGATGCTTA+TGG | - | chr6.1:24085205-24085224 | MS.gene054328:intron | 15.0% |
| !!! | TCTCTGTTTTATATAAAAAA+TGG | - | chr6.1:24085109-24085128 | MS.gene054328:intron | 15.0% |
| !!! | TTTTATATAAAACAGAGAAA+TGG | + | chr6.1:24085107-24085126 | None:intergenic | 15.0% |
| !! | AATGAACTAAATCATTATAC+GGG | + | chr6.1:24086280-24086299 | None:intergenic | 20.0% |
| !! | ATTCATGACATAAACAATAA+AGG | + | chr6.1:24085453-24085472 | None:intergenic | 20.0% |
| !! | CAATGAACTAAATCATTATA+CGG | + | chr6.1:24086281-24086300 | None:intergenic | 20.0% |
| !!! | AATTTTTATTTGACATTCCT+TGG | - | chr6.1:24084630-24084649 | MS.gene054328:intron | 20.0% |
| !!! | GTAACATTTGATTTACTTTT+AGG | - | chr6.1:24084804-24084823 | MS.gene054328:intron | 20.0% |
| !!! | TATATTTAACTAGATTAGTC+AGG | + | chr6.1:24085528-24085547 | None:intergenic | 20.0% |
| !!! | TTGTAACTTGTAAATATAGT+TGG | + | chr6.1:24085646-24085665 | None:intergenic | 20.0% |
| !!! | TTTTATATAAAAAATGGCAG+TGG | - | chr6.1:24085115-24085134 | MS.gene054328:intron | 20.0% |
| ! | AAAAATAAACCGAAAACAAC+TGG | + | chr6.1:24084406-24084425 | None:intergenic | 25.0% |
| ! | AATTACAACAAAAAAGTGGA+TGG | + | chr6.1:24083071-24083090 | None:intergenic | 25.0% |
| ! | AATTACCGAGTGTAAATTTA+TGG | - | chr6.1:24086368-24086387 | MS.gene054328:intron | 25.0% |
| ! | ACAAATAATCATCTCAAAAG+AGG | + | chr6.1:24085685-24085704 | None:intergenic | 25.0% |
| ! | ACATTAACAGACATATACAA+AGG | + | chr6.1:24084985-24085004 | None:intergenic | 25.0% |
| ! | ATATGCCATAAATTTACACT+CGG | + | chr6.1:24086376-24086395 | None:intergenic | 25.0% |
| ! | ATTTACACTCGGTAATTAAT+AGG | + | chr6.1:24086365-24086384 | None:intergenic | 25.0% |
| ! | CAAGATCAATAAACAATCAA+AGG | + | chr6.1:24083818-24083837 | None:intergenic | 25.0% |
| ! | CTATTTCATGAAAATCTTGT+TGG | - | chr6.1:24084900-24084919 | MS.gene054328:intron | 25.0% |
| ! | CTGGTTAATCTAAGTTAAAT+TGG | - | chr6.1:24084660-24084679 | MS.gene054328:intron | 25.0% |
| ! | GCTTATGAATAAACAACTTA+TGG | + | chr6.1:24084550-24084569 | None:intergenic | 25.0% |
| ! | GTACTTATTTCATACAATCA+TGG | - | chr6.1:24085300-24085319 | MS.gene054328:intron | 25.0% |
| ! | TTTATATAAAACAGACCTGT+AGG | - | chr6.1:24085743-24085762 | MS.gene054328:intron | 25.0% |
| !! | ACCAATACACTAATTTTGTT+GGG | + | chr6.1:24086104-24086123 | None:intergenic | 25.0% |
| !! | CTAATTTTGTTGGGTAAATT+AGG | + | chr6.1:24086095-24086114 | None:intergenic | 25.0% |
| !! | GAGTGAAAATTATCTGTTTT+GGG | - | chr6.1:24085340-24085359 | MS.gene054328:intron | 25.0% |
| !! | GCTTTTAATATGATATTCCT+TGG | - | chr6.1:24085496-24085515 | MS.gene054328:intron | 25.0% |
| !! | TCATTTTCTCAAATTATCAC+CGG | + | chr6.1:24083892-24083911 | None:intergenic | 25.0% |
| !! | TGAGTGAAAATTATCTGTTT+TGG | - | chr6.1:24085339-24085358 | MS.gene054328:intron | 25.0% |
| !! | TTAAGTAGTATTTTGTGGAT+GGG | - | chr6.1:24086201-24086220 | MS.gene054328:intron | 25.0% |
| !!! | CATAAACAATAAAGGCATTA+TGG | + | chr6.1:24085445-24085464 | None:intergenic | 25.0% |
| !!! | CTTATTTGGATTAACTTGTT+TGG | - | chr6.1:24084297-24084316 | MS.gene054328:intron | 25.0% |
| !!! | GATTTTTGATTGGTTTTTGA+CGG | - | chr6.1:24084036-24084055 | MS.gene054328:intron | 25.0% |
| !!! | GTGATTTTTGTTGTGAATTT+TGG | - | chr6.1:24083199-24083218 | MS.gene054328:intron | 25.0% |
| !!! | GTTTGATTGTTGTTTTGTTT+TGG | - | chr6.1:24084069-24084088 | MS.gene054328:intron | 25.0% |
| !!! | TGAATTTTGGTAAAGCTTAT+GGG | - | chr6.1:24083212-24083231 | MS.gene054328:intron | 25.0% |
| !!! | TGATTTACTTTTAGGTGTTT+TGG | - | chr6.1:24084812-24084831 | MS.gene054328:intron | 25.0% |
| !!! | TGTGATTTTGTTGTGAATAT+TGG | - | chr6.1:24083166-24083185 | MS.gene054328:intron | 25.0% |
| !!! | TTGCAATGTTTTTGTGATTT+TGG | - | chr6.1:24083404-24083423 | MS.gene054328:intron | 25.0% |
| !!! | TTTATTTTTATAACCACTCC+AGG | - | chr6.1:24084417-24084436 | MS.gene054328:intron | 25.0% |
| ACCCAACAAAATTAGTGTAT+TGG | - | chr6.1:24086100-24086119 | MS.gene054328:intron | 30.0% | |
| ATAAGGTTACTGGAAAAGTT+AGG | - | chr6.1:24083628-24083647 | MS.gene054328:intron | 30.0% | |
| ATGTGTTTCGCTTATTCATT+TGG | - | chr6.1:24085001-24085020 | MS.gene054328:intron | 30.0% | |
| ATTGATGTAAACACATGTGT+TGG | - | chr6.1:24083770-24083789 | MS.gene054328:intron | 30.0% | |
| CATAAGATCAAGAAGGAAAA+GGG | + | chr6.1:24085888-24085907 | None:intergenic | 30.0% | |
| CTGCAACTAAGTATTTGTTT+GGG | - | chr6.1:24084780-24084799 | MS.gene054328:intron | 30.0% | |
| GAATTCCATAACACAAAATC+AGG | + | chr6.1:24085266-24085285 | None:intergenic | 30.0% | |
| GGAATTCAAACTTATACTAC+AGG | - | chr6.1:24085912-24085931 | MS.gene054328:CDS | 30.0% | |
| GTTCGTGAAAACATCTTAAT+AGG | - | chr6.1:24084443-24084462 | MS.gene054328:intron | 30.0% | |
| TCTATGAATCATTGACACAT+CGG | - | chr6.1:24083718-24083737 | MS.gene054328:intron | 30.0% | |
| TTGGCTTAACTCACTAAATT+TGG | - | chr6.1:24084679-24084698 | MS.gene054328:intron | 30.0% | |
| TTGTAAACTATGTTCAGACT+TGG | - | chr6.1:24084272-24084291 | MS.gene054328:intron | 30.0% | |
| ! | CACCAATACACTAATTTTGT+TGG | + | chr6.1:24086105-24086124 | None:intergenic | 30.0% |
| ! | CTTTTCCTGATTTTGTGTTA+TGG | - | chr6.1:24085258-24085277 | MS.gene054328:intron | 30.0% |
| ! | GTTAAGTAGTATTTTGTGGA+TGG | - | chr6.1:24086200-24086219 | MS.gene054328:intron | 30.0% |
| ! | GTTTGGAATTTGATGCATAT+CGG | - | chr6.1:24085853-24085872 | MS.gene054328:intron | 30.0% |
| ! | TTTTGTATATTCTTGTTGCG+AGG | - | chr6.1:24083483-24083502 | MS.gene054328:intron | 30.0% |
| !! | ACATATTCACCAGTTGTTTT+CGG | - | chr6.1:24084394-24084413 | MS.gene054328:intron | 30.0% |
| !! | ACTTTTAGGTGTTTTGGATA+TGG | - | chr6.1:24084818-24084837 | MS.gene054328:intron | 30.0% |
| !! | GAACAAATGATTTGCTTAGT+TGG | + | chr6.1:24084745-24084764 | None:intergenic | 30.0% |
| !! | GATGTTTTTGTCGTGAATTT+TGG | - | chr6.1:24083134-24083153 | MS.gene054328:CDS | 30.0% |
| !! | GGAAAAGCATTGTAAAGAAA+AGG | + | chr6.1:24086162-24086181 | None:intergenic | 30.0% |
| !! | GTGAATTTTGGTAAAGCTTA+TGG | - | chr6.1:24083211-24083230 | MS.gene054328:intron | 30.0% |
| !! | GTGTTTTAAATGTTTGTCCT+TGG | - | chr6.1:24086122-24086141 | MS.gene054328:intron | 30.0% |
| !! | TGGGATTTTGTTGTGAATTT+TGG | - | chr6.1:24083231-24083250 | MS.gene054328:intron | 30.0% |
| !! | TTAAGAATTTGAGCGTTGAA+GGG | - | chr6.1:24086514-24086533 | MS.gene054328:intron | 30.0% |
| !!! | TGCAAACATTTCACTTTTTC+AGG | - | chr6.1:24086321-24086340 | MS.gene054328:intron | 30.0% |
| !!! | TGTGAAGTTTTTGAAGCATA+AGG | - | chr6.1:24083611-24083630 | MS.gene054328:intron | 30.0% |
| !!! | TTTTTGAAGCATAAGGTTAC+TGG | - | chr6.1:24083618-24083637 | MS.gene054328:intron | 30.0% |
| AAAAAATGGCAGTGGTGTTT+AGG | - | chr6.1:24085123-24085142 | MS.gene054328:intron | 35.0% | |
| AAGATACCTGTCTTTCTTGT+AGG | - | chr6.1:24085707-24085726 | MS.gene054328:intron | 35.0% | |
| ACAACACTATCACTTACTGT+TGG | + | chr6.1:24085034-24085053 | None:intergenic | 35.0% | |
| ACACCAGAAAAAGAAAGCAA+GGG | - | chr6.1:24086609-24086628 | MS.gene054328:CDS | 35.0% | |
| AGATGCTTATGGTGATTGTT+TGG | - | chr6.1:24085216-24085235 | MS.gene054328:intron | 35.0% | |
| AGATGGTTACTGTGATTGTT+TGG | - | chr6.1:24085836-24085855 | MS.gene054328:intron | 35.0% | |
| ATAAAACAGACCTGTAGGTT+AGG | - | chr6.1:24085748-24085767 | MS.gene054328:intron | 35.0% | |
| ATGCAGAAAAGAAAGACGAA+GGG | - | chr6.1:24086544-24086563 | MS.gene054328:CDS | 35.0% | |
| CCATAAGATCAAGAAGGAAA+AGG | + | chr6.1:24085889-24085908 | None:intergenic | 35.0% | |
| CTTCAACGCTCAAATTCTTA+AGG | + | chr6.1:24086515-24086534 | None:intergenic | 35.0% | |
| CTTGCTTTCCTCTTTATTCA+GGG | + | chr6.1:24086469-24086488 | None:intergenic | 35.0% | |
| GCTGCAACTAAGTATTTGTT+TGG | - | chr6.1:24084779-24084798 | MS.gene054328:intron | 35.0% | |
| GGAATGAGAAATCTTGTGTT+TGG | - | chr6.1:24084129-24084148 | MS.gene054328:intron | 35.0% | |
| GGTTAACCAAAAACACACAA+CGG | + | chr6.1:24085625-24085644 | None:intergenic | 35.0% | |
| GTGAAATGTTTGCAATCCAA+TGG | + | chr6.1:24086315-24086334 | None:intergenic | 35.0% | |
| GTTAGATAGCAGAAAGTTCA+TGG | - | chr6.1:24086419-24086438 | MS.gene054328:intron | 35.0% | |
| TAGAAACCTACAAGAAAGAC+AGG | + | chr6.1:24085716-24085735 | None:intergenic | 35.0% | |
| TCAATACTCACTGAGATGAT+TGG | + | chr6.1:24083691-24083710 | None:intergenic | 35.0% | |
| TCCATACCATAAGATCAAGA+AGG | + | chr6.1:24085895-24085914 | None:intergenic | 35.0% | |
| TCCTTCTTGATCTTATGGTA+TGG | - | chr6.1:24085891-24085910 | MS.gene054328:CDS | 35.0% | |
| ! | ATGCTTTTCCCTGCTTATAA+TGG | - | chr6.1:24086172-24086191 | MS.gene054328:intron | 35.0% |
| ! | ATTTTACAATCGAACTCGAG+AGG | + | chr6.1:24085776-24085795 | None:intergenic | 35.0% |
| ! | CAGGGTTAAGTAGTATTTTG+TGG | - | chr6.1:24086196-24086215 | MS.gene054328:intron | 35.0% |
| ! | CCTTTTCCTTCTTGATCTTA+TGG | - | chr6.1:24085886-24085905 | MS.gene054328:CDS | 35.0% |
| ! | TGCTTTTCCCTGCTTATAAT+GGG | - | chr6.1:24086173-24086192 | MS.gene054328:intron | 35.0% |
| ! | TTTTACCTAACATGATCCTG+TGG | - | chr6.1:24086234-24086253 | MS.gene054328:intron | 35.0% |
| !! | CTTAAGAATTTGAGCGTTGA+AGG | - | chr6.1:24086513-24086532 | MS.gene054328:intron | 35.0% |
| !! | GAGGATCGACTTTTCTTTAT+TGG | - | chr6.1:24085075-24085094 | MS.gene054328:intron | 35.0% |
| !! | TTTCTCCTTAGTTTTCTCCT+CGG | + | chr6.1:24086586-24086605 | None:intergenic | 35.0% |
| !!! | CTCACTCACATTTTCAAGTT+TGG | + | chr6.1:24085977-24085996 | None:intergenic | 35.0% |
| AAGTGTGTGACATTACCGAA+GGG | - | chr6.1:24086014-24086033 | MS.gene054328:intron | 40.0% | |
| AATCATTGACACATCGGCAT+TGG | - | chr6.1:24083724-24083743 | MS.gene054328:intron | 40.0% | |
| AATTGAGTGTGAACACGTGT+CGG | - | chr6.1:24083915-24083934 | MS.gene054328:intron | 40.0% | |
| ACTTCGTGAAGTTGGATGAT+CGG | + | chr6.1:24082984-24083003 | None:intergenic | 40.0% | |
| ATCTTCCTCTTCGTGATGAT+CGG | + | chr6.1:24082919-24082938 | None:intergenic | 40.0% | |
| CCTGAATAAAGAGGAAAGCA+AGG | - | chr6.1:24086467-24086486 | MS.gene054328:intron | 40.0% | |
| CCTTGCTTTCCTCTTTATTC+AGG | + | chr6.1:24086470-24086489 | None:intergenic | 40.0% | |
| GAAAACCGAGGAGAAAACTA+AGG | - | chr6.1:24086578-24086597 | MS.gene054328:CDS | 40.0% | |
| GAAAAGTCGATCCTCAAACA+TGG | + | chr6.1:24085070-24085089 | None:intergenic | 40.0% | |
| GACACCAGAAAAAGAAAGCA+AGG | - | chr6.1:24086608-24086627 | MS.gene054328:CDS | 40.0% | |
| GATGCAGAAAAGAAAGACGA+AGG | - | chr6.1:24086543-24086562 | MS.gene054328:CDS | 40.0% | |
| GATTCCCTTCCTTGTCAAAT+CGG | + | chr6.1:24083566-24083585 | None:intergenic | 40.0% | |
| GTTAGACGCTAACATTTGTC+AGG | - | chr6.1:24083950-24083969 | MS.gene054328:intron | 40.0% | |
| TAAGTGTGTGACATTACCGA+AGG | - | chr6.1:24086013-24086032 | MS.gene054328:intron | 40.0% | |
| TATACTTAACTCGCAGTGTG+TGG | - | chr6.1:24085544-24085563 | MS.gene054328:intron | 40.0% | |
| TGCTGAATCCCTGAATAAAG+AGG | - | chr6.1:24086458-24086477 | MS.gene054328:intron | 40.0% | |
| TGTGAGACTGAGAGAACATA+TGG | - | chr6.1:24084359-24084378 | MS.gene054328:intron | 40.0% | |
| TTCTTCATCTTCTTCACCAG+TGG | + | chr6.1:24083015-24083034 | None:intergenic | 40.0% | |
| TTGACAAGGAAGGGAATCAA+TGG | - | chr6.1:24083568-24083587 | MS.gene054328:intron | 40.0% | |
| TTGTTGGAACCGTTTGCTTA+GGG | - | chr6.1:24084916-24084935 | MS.gene054328:intron | 40.0% | |
| ! | CTTATGCCGTTGTGTGTTTT+TGG | - | chr6.1:24085616-24085635 | MS.gene054328:intron | 40.0% |
| ! | GATGTTTTCACGAACTATCC+TGG | + | chr6.1:24084438-24084457 | None:intergenic | 40.0% |
| ! | TCTCCCTTGCTTTCTTTTTC+TGG | + | chr6.1:24086615-24086634 | None:intergenic | 40.0% |
| !! | GAAACTGTACCGATTTGACA+AGG | - | chr6.1:24083554-24083573 | MS.gene054328:intron | 40.0% |
| !! | GTTCAGACTTGGTGCTTATT+TGG | - | chr6.1:24084283-24084302 | MS.gene054328:intron | 40.0% |
| !! | TGCTCTTGCACAGTCATTTT+AGG | + | chr6.1:24084104-24084123 | None:intergenic | 40.0% |
| !! | TGTACCGATTTGACAAGGAA+GGG | - | chr6.1:24083559-24083578 | MS.gene054328:intron | 40.0% |
| !! | TGTGTTGGTGTTGTAGATAG+CGG | - | chr6.1:24083785-24083804 | MS.gene054328:intron | 40.0% |
| AAACAGCGACTTCGTGAAGT+TGG | + | chr6.1:24082992-24083011 | None:intergenic | 45.0% | |
| AACCCTGCCCATTATAAGCA+GGG | + | chr6.1:24086183-24086202 | None:intergenic | 45.0% | |
| AAGTGCCACAGGATCATGTT+AGG | + | chr6.1:24086242-24086261 | None:intergenic | 45.0% | |
| AGGTGCACATAATTCGACCA+AGG | + | chr6.1:24086142-24086161 | None:intergenic | 45.0% | |
| CAAGGAAGGGAATCAATGGA+AGG | - | chr6.1:24083572-24083591 | MS.gene054328:intron | 45.0% | |
| CATTGCTGCTGTCTTTCCAT+TGG | - | chr6.1:24086296-24086315 | MS.gene054328:intron | 45.0% | |
| CATTGTGTGTGCCATGTTTG+AGG | - | chr6.1:24085056-24085075 | MS.gene054328:intron | 45.0% | |
| CTCAAACATGGCACACACAA+TGG | + | chr6.1:24085058-24085077 | None:intergenic | 45.0% | |
| CTTGTTGGAACCGTTTGCTT+AGG | - | chr6.1:24084915-24084934 | MS.gene054328:intron | 45.0% | |
| GAAAAGAAAGTCGAAGAGCC+TGG | - | chr6.1:24086639-24086658 | MS.gene054328:CDS | 45.0% | |
| GAAAGACGAAGGGAAATCTG+AGG | - | chr6.1:24086554-24086573 | MS.gene054328:CDS | 45.0% | |
| GAAATCTGAGGAGAAAACCG+AGG | - | chr6.1:24086566-24086585 | MS.gene054328:CDS | 45.0% | |
| GAATCAATGGAAGGAACGAG+GGG | - | chr6.1:24083581-24083600 | MS.gene054328:intron | 45.0% | |
| GATTAACCAGTGCAACACCA+AGG | + | chr6.1:24084650-24084669 | None:intergenic | 45.0% | |
| GGAATCAATGGAAGGAACGA+GGG | - | chr6.1:24083580-24083599 | MS.gene054328:intron | 45.0% | |
| TAACCCTGCCCATTATAAGC+AGG | + | chr6.1:24086184-24086203 | None:intergenic | 45.0% | |
| TGACACTGACACGTTAACAC+CGG | - | chr6.1:24083870-24083889 | MS.gene054328:intron | 45.0% | |
| TGTTGGAACCGTTTGCTTAG+GGG | - | chr6.1:24084917-24084936 | MS.gene054328:intron | 45.0% | |
| TTTCACGAACTATCCTGGAG+TGG | + | chr6.1:24084433-24084452 | None:intergenic | 45.0% | |
| ! | ATGGCAGTGGTGTTTAGGTT+TGG | - | chr6.1:24085128-24085147 | MS.gene054328:intron | 45.0% |
| ! | GAGAGAGAGAGAGAGTATAC+AGG | + | chr6.1:24083049-24083068 | None:intergenic | 45.0% |
| ! | GATTAGTCAGGACAAGACCA+AGG | + | chr6.1:24085516-24085535 | None:intergenic | 45.0% |
| !! | ACTTAGTTGCAGCTTGCTAG+TGG | + | chr6.1:24084772-24084791 | None:intergenic | 45.0% |
| !! | CTGTACCGATTTGACAAGGA+AGG | - | chr6.1:24083558-24083577 | MS.gene054328:intron | 45.0% |
| !! | CTTAGTTGCAGCTTGCTAGT+GGG | + | chr6.1:24084771-24084790 | None:intergenic | 45.0% |
| !! | TGTTACGTTAGAAGTGCCAC+AGG | + | chr6.1:24086253-24086272 | None:intergenic | 45.0% |
| !! | TTCCCTGCTTATAATGGGCA+GGG | - | chr6.1:24086178-24086197 | MS.gene054328:intron | 45.0% |
| !! | TTTCCCTGCTTATAATGGGC+AGG | - | chr6.1:24086177-24086196 | MS.gene054328:intron | 45.0% |
| AGCATCAGCCCCTAAGCAAA+CGG | + | chr6.1:24084928-24084947 | None:intergenic | 50.0% | |
| ATCTTGTGTTTGGCACGCGA+AGG | - | chr6.1:24084139-24084158 | MS.gene054328:intron | 50.0% | |
| CTTAAGGAGATCAGCAGCAG+TGG | + | chr6.1:24086499-24086518 | None:intergenic | 50.0% | |
| CTTAGATGCCACCTGTGTGT+GGG | - | chr6.1:24086051-24086070 | MS.gene054328:intron | 50.0% | |
| CTTAGGGGCTGATGCTTAGA+TGG | - | chr6.1:24084932-24084951 | MS.gene054328:intron | 50.0% | |
| GGGAATCAATGGAAGGAACG+AGG | - | chr6.1:24083579-24083598 | MS.gene054328:intron | 50.0% | |
| TCGAGAGGAACCTAACCTAC+AGG | + | chr6.1:24085761-24085780 | None:intergenic | 50.0% | |
| ! | ATGACTGTGCAAGAGCATGC+TGG | - | chr6.1:24084107-24084126 | MS.gene054328:intron | 50.0% |
| ! | TGACTGTGCAAGAGCATGCT+GGG | - | chr6.1:24084108-24084127 | MS.gene054328:intron | 50.0% |
| !! | AAGCACCGATCATCACGAAG+AGG | - | chr6.1:24082911-24082930 | MS.gene054328:CDS | 50.0% |
| !! | GACATTCCTTGGTGTTGCAC+TGG | - | chr6.1:24084641-24084660 | MS.gene054328:intron | 50.0% |
| CACGCGAAGGACTTTGCTGA+TGG | - | chr6.1:24084152-24084171 | MS.gene054328:intron | 55.0% | |
| GAAGAGGAAGATGTTCCCGC+CGG | - | chr6.1:24082927-24082946 | MS.gene054328:CDS | 55.0% | |
| GCTTAGATGCCACCTGTGTG+TGG | - | chr6.1:24086050-24086069 | MS.gene054328:intron | 55.0% | |
| TAACTCGCAGTGTGTGGTGC+TGG | - | chr6.1:24085550-24085569 | MS.gene054328:intron | 55.0% | |
| ! | CACGAAGTCGCTGTTTCCAC+TGG | - | chr6.1:24082996-24083015 | MS.gene054328:CDS | 55.0% |
| !! | ACCGAAGGGTGTTGTGCATG+CGG | - | chr6.1:24086028-24086047 | MS.gene054328:intron | 55.0% |
| CAATGGAAGGAACGAGGGGC+AGG | - | chr6.1:24083585-24083604 | MS.gene054328:intron | 60.0% | |
| CCACCTGTGTGTGGGCACAA+TGG | - | chr6.1:24086059-24086078 | MS.gene054328:intron | 60.0% | |
| CCATTGTGCCCACACACAGG+TGG | + | chr6.1:24086062-24086081 | None:intergenic | 60.0% | |
| GATCGGAGCGATTTGAGCGC+CGG | + | chr6.1:24082967-24082986 | None:intergenic | 60.0% | |
| GCCGCATGCACAACACCCTT+CGG | + | chr6.1:24086032-24086051 | None:intergenic | 60.0% | |
| GCCGGCGATGAAGAAGACAC+CGG | - | chr6.1:24082945-24082964 | MS.gene054328:CDS | 60.0% | |
| GCCGGTGTCTTCTTCATCGC+CGG | + | chr6.1:24082949-24082968 | None:intergenic | 60.0% | |
| GGTGTCTTCTTCATCGCCGG+CGG | + | chr6.1:24082946-24082965 | None:intergenic | 60.0% | |
| GTGTCTTCTTCATCGCCGGC+GGG | + | chr6.1:24082945-24082964 | None:intergenic | 60.0% | |
| GCGCCATTGTGCCCACACAC+AGG | + | chr6.1:24086065-24086084 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 24082903 | 24086674 | 24082903 | ID=MS.gene054328 |
| chr6.1 | mRNA | 24082903 | 24086674 | 24082903 | ID=MS.gene054328.t1;Parent=MS.gene054328 |
| chr6.1 | exon | 24086529 | 24086674 | 24086529 | ID=MS.gene054328.t1.exon1;Parent=MS.gene054328.t1 |
| chr6.1 | CDS | 24086529 | 24086674 | 24086529 | ID=cds.MS.gene054328.t1;Parent=MS.gene054328.t1 |
| chr6.1 | exon | 24085878 | 24086029 | 24085878 | ID=MS.gene054328.t1.exon2;Parent=MS.gene054328.t1 |
| chr6.1 | CDS | 24085878 | 24086029 | 24085878 | ID=cds.MS.gene054328.t1;Parent=MS.gene054328.t1 |
| chr6.1 | exon | 24085356 | 24085481 | 24085356 | ID=MS.gene054328.t1.exon3;Parent=MS.gene054328.t1 |
| chr6.1 | CDS | 24085356 | 24085481 | 24085356 | ID=cds.MS.gene054328.t1;Parent=MS.gene054328.t1 |
| chr6.1 | exon | 24082903 | 24083153 | 24082903 | ID=MS.gene054328.t1.exon4;Parent=MS.gene054328.t1 |
| chr6.1 | CDS | 24082903 | 24083153 | 24082903 | ID=cds.MS.gene054328.t1;Parent=MS.gene054328.t1 |
| Gene Sequence |
| Protein sequence |
