Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21508.t1 | XP_003611409.1 | 98.2 | 496 | 9 | 0 | 1 | 496 | 48 | 543 | 8.50E-291 | 1008.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21508.t1 | O23553 | 73.2 | 504 | 124 | 5 | 1 | 496 | 48 | 548 | 2.9e-223 | 775.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21508.t1 | G7JYN3 | 98.2 | 496 | 9 | 0 | 1 | 496 | 48 | 543 | 6.2e-291 | 1008.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050060 | MS.gene21508 | 0.806211 | 9.18E-50 | -1.69E-46 |
| MS.gene050426 | MS.gene21508 | -0.822188 | 2.71E-53 | -1.69E-46 |
| MS.gene050642 | MS.gene21508 | 0.814877 | 1.23E-51 | -1.69E-46 |
| MS.gene052077 | MS.gene21508 | 0.827572 | 1.45E-54 | -1.69E-46 |
| MS.gene052135 | MS.gene21508 | 0.800727 | 1.26E-48 | -1.69E-46 |
| MS.gene052340 | MS.gene21508 | 0.806238 | 9.06E-50 | -1.69E-46 |
| MS.gene052589 | MS.gene21508 | 0.803596 | 3.23E-49 | -1.69E-46 |
| MS.gene053330 | MS.gene21508 | 0.827947 | 1.18E-54 | -1.69E-46 |
| MS.gene054349 | MS.gene21508 | 0.837895 | 3.97E-57 | -1.69E-46 |
| MS.gene05553 | MS.gene21508 | 0.82505 | 5.79E-54 | -1.69E-46 |
| MS.gene055946 | MS.gene21508 | 0.811981 | 5.33E-51 | -1.69E-46 |
| MS.gene056633 | MS.gene21508 | 0.815942 | 7.14E-52 | -1.69E-46 |
| MS.gene056664 | MS.gene21508 | 0.811903 | 5.55E-51 | -1.69E-46 |
| MS.gene058746 | MS.gene21508 | 0.805919 | 1.06E-49 | -1.69E-46 |
| MS.gene059511 | MS.gene21508 | 0.8068 | 6.90E-50 | -1.69E-46 |
| MS.gene059512 | MS.gene21508 | 0.81838 | 2.02E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21508.t1 | MTR_5g013640 | 98.185 | 496 | 9 | 0 | 1 | 496 | 48 | 543 | 0.0 | 1024 |
| MS.gene21508.t1 | MTR_5g013620 | 94.153 | 496 | 27 | 1 | 1 | 496 | 50 | 543 | 0.0 | 988 |
| MS.gene21508.t1 | MTR_4g099110 | 76.735 | 490 | 107 | 2 | 14 | 496 | 52 | 541 | 0.0 | 803 |
| MS.gene21508.t1 | MTR_6g477780 | 62.281 | 342 | 117 | 2 | 132 | 461 | 10 | 351 | 1.15e-163 | 468 |
| MS.gene21508.t1 | MTR_4g045667 | 50.115 | 435 | 200 | 4 | 38 | 458 | 11 | 442 | 1.70e-156 | 454 |
| MS.gene21508.t1 | MTR_2g089030 | 50.229 | 436 | 200 | 4 | 37 | 458 | 83 | 515 | 7.30e-151 | 443 |
| MS.gene21508.t1 | MTR_8g099775 | 46.827 | 457 | 224 | 7 | 26 | 465 | 62 | 516 | 3.89e-140 | 414 |
| MS.gene21508.t1 | MTR_7g077410 | 45.815 | 454 | 229 | 6 | 18 | 458 | 243 | 692 | 1.38e-125 | 382 |
| MS.gene21508.t1 | MTR_2g020240 | 39.866 | 449 | 257 | 5 | 27 | 470 | 70 | 510 | 2.21e-109 | 335 |
| MS.gene21508.t1 | MTR_5g026210 | 37.931 | 464 | 268 | 9 | 10 | 461 | 189 | 644 | 3.99e-104 | 325 |
| MS.gene21508.t1 | MTR_2g020240 | 39.108 | 381 | 220 | 4 | 94 | 470 | 3 | 375 | 4.55e-92 | 286 |
| MS.gene21508.t1 | MTR_5g026210 | 40.308 | 325 | 184 | 7 | 10 | 332 | 189 | 505 | 4.87e-80 | 258 |
| MS.gene21508.t1 | MTR_5g026210 | 40.942 | 276 | 157 | 5 | 10 | 283 | 189 | 460 | 4.58e-68 | 226 |
| MS.gene21508.t1 | MTR_6g477770 | 67.742 | 93 | 30 | 0 | 40 | 132 | 106 | 198 | 2.21e-40 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21508.t1 | AT4G17090 | 73.611 | 504 | 122 | 5 | 1 | 496 | 48 | 548 | 0.0 | 784 |
| MS.gene21508.t1 | AT3G23920 | 61.277 | 470 | 164 | 3 | 6 | 461 | 76 | 541 | 0.0 | 608 |
| MS.gene21508.t1 | AT4G15210 | 48.853 | 436 | 205 | 5 | 38 | 458 | 12 | 444 | 1.75e-149 | 436 |
| MS.gene21508.t1 | AT4G15210 | 52.308 | 390 | 181 | 4 | 38 | 425 | 12 | 398 | 3.73e-147 | 428 |
| MS.gene21508.t1 | AT2G32290 | 48.506 | 435 | 208 | 5 | 37 | 458 | 75 | 506 | 2.03e-141 | 419 |
| MS.gene21508.t1 | AT4G00490 | 48.409 | 440 | 210 | 6 | 40 | 466 | 95 | 530 | 1.16e-140 | 416 |
| MS.gene21508.t1 | AT4G15210 | 49.492 | 394 | 182 | 4 | 79 | 458 | 1 | 391 | 6.72e-139 | 407 |
| MS.gene21508.t1 | AT4G15210 | 49.492 | 394 | 182 | 4 | 79 | 458 | 1 | 391 | 6.72e-139 | 407 |
| MS.gene21508.t1 | AT5G55700 | 44.292 | 438 | 227 | 4 | 39 | 459 | 91 | 528 | 1.77e-132 | 394 |
| MS.gene21508.t1 | AT2G45880 | 44.796 | 442 | 227 | 6 | 27 | 455 | 235 | 672 | 4.02e-123 | 375 |
| MS.gene21508.t1 | AT5G45300 | 39.819 | 442 | 248 | 8 | 32 | 461 | 245 | 680 | 9.77e-101 | 317 |
| MS.gene21508.t1 | AT5G45300 | 39.819 | 442 | 248 | 8 | 32 | 461 | 247 | 682 | 1.08e-100 | 317 |
| MS.gene21508.t1 | AT5G45300 | 39.819 | 442 | 248 | 8 | 32 | 461 | 261 | 696 | 1.31e-100 | 317 |
| MS.gene21508.t1 | AT5G55700 | 45.566 | 327 | 165 | 3 | 146 | 459 | 39 | 365 | 6.82e-100 | 305 |
| MS.gene21508.t1 | AT5G18670 | 38.876 | 427 | 243 | 4 | 40 | 459 | 87 | 502 | 1.58e-91 | 289 |
Find 118 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACAGATTTACAGATTATT+TGG | 0.120196 | 5.3:-6806789 | MS.gene21508:CDS |
| CCAATGAATTCCAGCTATTT+TGG | 0.174268 | 5.3:+6805906 | None:intergenic |
| TTCCAAGTTCCATCAGTTTC+AGG | 0.191128 | 5.3:+6806352 | None:intergenic |
| CTAGTTTACACAGACAAATT+AGG | 0.217572 | 5.3:-6806914 | MS.gene21508:CDS |
| CTTTATGTTGGACACATTAA+AGG | 0.225336 | 5.3:-6805451 | MS.gene21508:CDS |
| ATGGTCCAATGAAATATAAT+TGG | 0.246107 | 5.3:-6807273 | MS.gene21508:CDS |
| ACAGTATATGAGATCTTCTT+TGG | 0.254734 | 5.3:-6806163 | MS.gene21508:intron |
| ACTTGTTTGAAATATGCTTT+TGG | 0.284260 | 5.3:+6805945 | None:intergenic |
| TGGACACATTAAAGGAATTA+AGG | 0.290030 | 5.3:-6805443 | MS.gene21508:CDS |
| ACTTGGAAGTTTCCAGGAAT+TGG | 0.297749 | 5.3:-6806337 | MS.gene21508:CDS |
| GGTTGATGCTTGGTGGGGTT+TGG | 0.299766 | 5.3:-6807305 | MS.gene21508:CDS |
| GGAACATGGAACACAGAATA+TGG | 0.310195 | 5.3:-6806033 | MS.gene21508:CDS |
| AATCAATTTCCTGAGGATAC+TGG | 0.317015 | 5.3:-6806072 | MS.gene21508:CDS |
| GGTTGCTTGAAGGTGAAAAT+TGG | 0.317020 | 5.3:-6805555 | MS.gene21508:CDS |
| CATCCCAATGAGATGTATTC+AGG | 0.331249 | 5.3:+6806881 | None:intergenic |
| CATTGGAATTCTCCAATTCC+TGG | 0.333977 | 5.3:+6806325 | None:intergenic |
| GAAGCATCAGCTGCCGCAAT+TGG | 0.335419 | 5.3:-6806141 | MS.gene21508:CDS |
| GATGGAACTTGGAAGTTTCC+AGG | 0.338985 | 5.3:-6806343 | MS.gene21508:CDS |
| CTTTCAAAATCTGATTCATA+TGG | 0.346178 | 5.3:-6805481 | MS.gene21508:CDS |
| ATGGAGATTTCTTCCTTGAT+TGG | 0.348721 | 5.3:-6806014 | MS.gene21508:CDS |
| GCTTCCCAATTATATTTCAT+TGG | 0.350244 | 5.3:+6807268 | None:intergenic |
| ACTAGTGGACCCCATGATTC+AGG | 0.351856 | 5.3:-6806102 | MS.gene21508:CDS |
| CATGGGTGCTTGAAGAAATA+AGG | 0.352882 | 5.3:-6806949 | MS.gene21508:CDS |
| GAAATGTTGGTGACTCTTGC+AGG | 0.358515 | 5.3:-6807168 | MS.gene21508:intron |
| TTTGCTAGCATTTGTGCTAT+TGG | 0.361586 | 5.3:+6805808 | None:intergenic |
| GGTGAACAATTAGCATGATT+AGG | 0.375380 | 5.3:+6805733 | None:intergenic |
| GACAGATTTACAGATTATTT+GGG | 0.378560 | 5.3:-6806788 | MS.gene21508:CDS |
| CCCATTGTTACCGTGTCTAA+TGG | 0.379739 | 5.3:+6807403 | None:intergenic |
| TAGTTTACACAGACAAATTA+GGG | 0.386153 | 5.3:-6806913 | MS.gene21508:CDS |
| AGATATGATTCAAGTGCTTA+TGG | 0.392336 | 5.3:-6805634 | MS.gene21508:CDS |
| TTGTCTGTGTAAACTAGCTC+AGG | 0.393606 | 5.3:+6806920 | None:intergenic |
| CAGTTAAGGAAAACAAGAAA+TGG | 0.402206 | 5.3:-6807501 | MS.gene21508:CDS |
| CATATCTAAGAATAAATAAG+AGG | 0.406737 | 5.3:-6805576 | MS.gene21508:CDS |
| AGCAATGAATGCTAGTTTGA+TGG | 0.408306 | 5.3:-6807359 | MS.gene21508:CDS |
| CCAAAATAGCTGGAATTCAT+TGG | 0.410744 | 5.3:-6805906 | MS.gene21508:CDS |
| TGAAAATTGGAGGCAATTTG+TGG | 0.420878 | 5.3:-6805542 | MS.gene21508:CDS |
| CAGGAAATTCAAGTGGGACT+AGG | 0.423979 | 5.3:-6806406 | MS.gene21508:CDS |
| TATGGAACTGATCTTTATGT+TGG | 0.435975 | 5.3:-6805463 | MS.gene21508:CDS |
| GAATCCTGAATACATCTCAT+TGG | 0.440984 | 5.3:-6806885 | MS.gene21508:CDS |
| AAACACCAACTCTACAGTTA+AGG | 0.445155 | 5.3:-6807515 | MS.gene21508:CDS |
| GGAGTTCTTCCTGCTAGAAC+AGG | 0.447514 | 5.3:+6806848 | None:intergenic |
| TCCAAGTTCCATCAGTTTCA+GGG | 0.453104 | 5.3:+6806353 | None:intergenic |
| TTTCACATGCATGGAAATGA+AGG | 0.453930 | 5.3:-6805767 | MS.gene21508:CDS |
| ACGGAAGCTTCTCATGTAAT+CGG | 0.454119 | 5.3:+6806811 | None:intergenic |
| AAACTATCTGCCAAAATAGC+TGG | 0.456022 | 5.3:-6805916 | MS.gene21508:CDS |
| TTTGTACCTTGTCATAGCAT+TGG | 0.457100 | 5.3:+6806308 | None:intergenic |
| ACTTGATTAACCAATCCTTC+TGG | 0.458432 | 5.3:+6805712 | None:intergenic |
| AAGATGGCAACAAAGATTGC+AGG | 0.463188 | 5.3:-6805688 | MS.gene21508:CDS |
| CCATCAGTTTCAGGGTAAGA+TGG | 0.465255 | 5.3:+6806361 | None:intergenic |
| TTGAAGAGTGCTGGAGTTGA+AGG | 0.475342 | 5.3:-6807334 | MS.gene21508:CDS |
| TGGTCCAATGAAATATAATT+GGG | 0.475409 | 5.3:-6807272 | MS.gene21508:CDS |
| CTTATTTCTTCAAGCACCCA+TGG | 0.475790 | 5.3:+6806950 | None:intergenic |
| AGTAATGGTTGATGCTTGGT+GGG | 0.476693 | 5.3:-6807311 | MS.gene21508:CDS |
| AATCCTGAATACATCTCATT+GGG | 0.477122 | 5.3:-6806884 | MS.gene21508:CDS |
| GATTGTATTGACCTGAATCA+TGG | 0.478768 | 5.3:+6806091 | None:intergenic |
| ATTGCAGGTGGTGAACTTGC+TGG | 0.483856 | 5.3:-6805673 | MS.gene21508:CDS |
| ATAAATAAGAGGTTGCTTGA+AGG | 0.486643 | 5.3:-6805565 | MS.gene21508:CDS |
| TATACTAAATTTCACATGCA+TGG | 0.487819 | 5.3:-6805776 | MS.gene21508:CDS |
| ACCCTGAAACTGATGGAACT+TGG | 0.491404 | 5.3:-6806354 | MS.gene21508:CDS |
| ATTGGTTAATCAAGTGAAGA+TGG | 0.500028 | 5.3:-6805704 | MS.gene21508:CDS |
| TAATTGTTCACCAGAAGGAT+TGG | 0.500260 | 5.3:-6805722 | MS.gene21508:CDS |
| AGTTAAGGAAAACAAGAAAT+GGG | 0.500489 | 5.3:-6807500 | MS.gene21508:CDS |
| TCAAGCACCCATGGTGGTAG+AGG | 0.503079 | 5.3:+6806959 | None:intergenic |
| CCATTAGACACGGTAACAAT+GGG | 0.505572 | 5.3:-6807403 | MS.gene21508:CDS |
| AAAAGCATATTTCAAACAAG+TGG | 0.507306 | 5.3:-6805943 | MS.gene21508:CDS |
| GAGTAATGGTTGATGCTTGG+TGG | 0.507394 | 5.3:-6807312 | MS.gene21508:CDS |
| TTGATGGCATTGAAGAGTGC+TGG | 0.508850 | 5.3:-6807343 | MS.gene21508:CDS |
| AAGCATCAGCTGCCGCAATT+GGG | 0.510467 | 5.3:-6806140 | MS.gene21508:CDS |
| CATCAATGTGGTGGAAATGT+TGG | 0.516528 | 5.3:-6807181 | MS.gene21508:CDS |
| TTATGCTGAGCTTGTTCAGA+TGG | 0.518500 | 5.3:-6807245 | MS.gene21508:CDS |
| GTAATGGTTGATGCTTGGTG+GGG | 0.525670 | 5.3:-6807310 | MS.gene21508:CDS |
| GATTCAGTGCCTGTTCTAGC+AGG | 0.529878 | 5.3:-6806857 | MS.gene21508:CDS |
| CCACTCTTTCTTCCCAATTG+CGG | 0.529912 | 5.3:+6806128 | None:intergenic |
| CATGCAACTGAATTAACTGC+TGG | 0.532417 | 5.3:-6805865 | MS.gene21508:CDS |
| CCATCTTACCCTGAAACTGA+TGG | 0.538520 | 5.3:-6806361 | MS.gene21508:CDS |
| GCCATTAGACACGGTAACAA+TGG | 0.539108 | 5.3:-6807404 | MS.gene21508:CDS |
| TAATCGGAGTAGACTTGAAG+TGG | 0.544728 | 5.3:+6806827 | None:intergenic |
| TGCTGGAGTTGAAGGAGTAA+TGG | 0.546595 | 5.3:-6807326 | MS.gene21508:CDS |
| TGCTTGAAGGTGAAAATTGG+AGG | 0.550977 | 5.3:-6805552 | MS.gene21508:CDS |
| GTTTGCTTGAGTACCAATCA+AGG | 0.552816 | 5.3:+6806001 | None:intergenic |
| TATAACACAAGGTTTCATGA+TGG | 0.559816 | 5.3:-6805838 | MS.gene21508:CDS |
| CCGCAATTGGGAAGAAAGAG+TGG | 0.559917 | 5.3:-6806128 | MS.gene21508:CDS |
| AAGAAAGAGTGGGGAACTAG+TGG | 0.560425 | 5.3:-6806117 | MS.gene21508:CDS |
| TAGCATTCCTCTACCACCAT+GGG | 0.563387 | 5.3:-6806966 | MS.gene21508:CDS |
| AAGGAGTAATGGTTGATGCT+TGG | 0.565190 | 5.3:-6807315 | MS.gene21508:CDS |
| ATTGTATTGACCTGAATCAT+GGG | 0.566012 | 5.3:+6806092 | None:intergenic |
| ACACAGACAAATTAGGGAGG+AGG | 0.571216 | 5.3:-6806907 | MS.gene21508:CDS |
| CATGCTAATTGTTCACCAGA+AGG | 0.574244 | 5.3:-6805727 | MS.gene21508:CDS |
| CTGCTGGTTACTATAACACA+AGG | 0.578850 | 5.3:-6805849 | MS.gene21508:CDS |
| CGCAATTGGGAAGAAAGAGT+GGG | 0.579608 | 5.3:-6806127 | MS.gene21508:CDS |
| GCACAAATGCTAGCAAAACA+TGG | 0.581514 | 5.3:-6805802 | MS.gene21508:CDS |
| AATAATCTGTAAATCTGTCA+CGG | 0.588821 | 5.3:+6806792 | None:intergenic |
| TTGTTTGCAGGAAATTCAAG+TGG | 0.593690 | 5.3:-6806413 | MS.gene21508:intron |
| TGTCTGTGTAAACTAGCTCA+GGG | 0.595938 | 5.3:+6806921 | None:intergenic |
| GGATATCTCAACTCCCCACA+TGG | 0.597220 | 5.3:+6806382 | None:intergenic |
| TGCTGATTCGAATAGAGTAC+CGG | 0.599220 | 5.3:-6807440 | MS.gene21508:CDS |
| AAGTGGGACTAGGTCCATGT+GGG | 0.602013 | 5.3:-6806396 | MS.gene21508:CDS |
| TTTGTTGTGAGTATGTCTGA+TGG | 0.609724 | 5.3:-6805517 | MS.gene21508:CDS |
| TCAAGCAAACTTGTTGAACA+TGG | 0.618498 | 5.3:-6805988 | MS.gene21508:CDS |
| ATAGCATTCCTCTACCACCA+TGG | 0.632237 | 5.3:-6806967 | MS.gene21508:intron |
| GTTGTGAGTATGTCTGATGG+TGG | 0.636973 | 5.3:-6805514 | MS.gene21508:CDS |
| TGTTTGCAGGAAATTCAAGT+GGG | 0.637360 | 5.3:-6806412 | MS.gene21508:intron |
| CAAGTGGGACTAGGTCCATG+TGG | 0.641124 | 5.3:-6806397 | MS.gene21508:CDS |
| TCGTGGTTATGAGCAATCGA+TGG | 0.660833 | 5.3:+6807463 | None:intergenic |
| AATGGCAACATCACAAACAC+CGG | 0.660873 | 5.3:+6807421 | None:intergenic |
| TTAGACACGGTAACAATGGG+AGG | 0.667348 | 5.3:-6807400 | MS.gene21508:CDS |
| GCAAGAAACACATTTCACAA+AGG | 0.674864 | 5.3:-6807539 | MS.gene21508:CDS |
| ATGGCAACAAAGATTGCAGG+TGG | 0.675921 | 5.3:-6805685 | MS.gene21508:CDS |
| CTCTATTCGAATCAGCATCG+TGG | 0.679739 | 5.3:+6807446 | None:intergenic |
| TCAATACAATCAATTTCCTG+AGG | 0.679778 | 5.3:-6806079 | MS.gene21508:CDS |
| AGAATTCCAATGCTATGACA+AGG | 0.689937 | 5.3:-6806314 | MS.gene21508:intron |
| TGTCTGATGGTGGTAAACCA+AGG | 0.696376 | 5.3:-6805504 | MS.gene21508:CDS |
| TGTGATGTTGCCATTAGACA+CGG | 0.702107 | 5.3:-6807413 | MS.gene21508:CDS |
| TTTACACAGACAAATTAGGG+AGG | 0.705030 | 5.3:-6806910 | MS.gene21508:CDS |
| AGTGGGACTAGGTCCATGTG+GGG | 0.709601 | 5.3:-6806395 | MS.gene21508:CDS |
| GCAATTGGGAAGAAAGAGTG+GGG | 0.714858 | 5.3:-6806126 | MS.gene21508:CDS |
| ATTTCTTCAAGCACCCATGG+TGG | 0.717661 | 5.3:+6806953 | None:intergenic |
| TTGTATTGACCTGAATCATG+GGG | 0.724619 | 5.3:+6806093 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTCTTAGATTTTTTATTTT+TGG | + | chr5.3:6805940-6805959 | None:intergenic | 15.0% |
| !!! | TAAAAAATCTAAGACTAATT+TGG | - | chr5.3:6805944-6805963 | MS.gene21508:CDS | 15.0% |
| !!! | TTATAAGATGAATACTTTTT+GGG | - | chr5.3:6806448-6806467 | MS.gene21508:intron | 15.0% |
| !!! | TTTATAAGATGAATACTTTT+TGG | - | chr5.3:6806447-6806466 | MS.gene21508:intron | 15.0% |
| !! | CATATCTAAGAATAAATAAG+AGG | - | chr5.3:6807373-6807392 | MS.gene21508:CDS | 20.0% |
| !!! | GTCTAACATTAATATGATTT+TGG | + | chr5.3:6806703-6806722 | None:intergenic | 20.0% |
| !!! | TGTTTGAAAATAAGTCATTT+TGG | + | chr5.3:6806769-6806788 | None:intergenic | 20.0% |
| ! | AATAATCTGTAAATCTGTCA+CGG | + | chr5.3:6806160-6806179 | None:intergenic | 25.0% |
| ! | ACAAAATTGAATTATGAGCT+AGG | + | chr5.3:6806423-6806442 | None:intergenic | 25.0% |
| ! | AGTTAAGGAAAACAAGAAAT+GGG | - | chr5.3:6805449-6805468 | MS.gene21508:CDS | 25.0% |
| ! | ATGATGATAAAACTAAGACT+TGG | - | chr5.3:6806482-6806501 | MS.gene21508:intron | 25.0% |
| ! | ATGGTCCAATGAAATATAAT+TGG | - | chr5.3:6805676-6805695 | MS.gene21508:CDS | 25.0% |
| ! | CTTTCAAAATCTGATTCATA+TGG | - | chr5.3:6807468-6807487 | MS.gene21508:CDS | 25.0% |
| ! | GAATGTAACAACTATTAACT+TGG | + | chr5.3:6805866-6805885 | None:intergenic | 25.0% |
| ! | GACAGATTTACAGATTATTT+GGG | - | chr5.3:6806161-6806180 | MS.gene21508:CDS | 25.0% |
| ! | TAATATTCAACCACCAATTT+AGG | - | chr5.3:6805831-6805850 | MS.gene21508:CDS | 25.0% |
| ! | TAGTTTACACAGACAAATTA+GGG | - | chr5.3:6806036-6806055 | MS.gene21508:CDS | 25.0% |
| ! | TATACTAAATTTCACATGCA+TGG | - | chr5.3:6807173-6807192 | MS.gene21508:CDS | 25.0% |
| ! | TGACAGATTTACAGATTATT+TGG | - | chr5.3:6806160-6806179 | MS.gene21508:CDS | 25.0% |
| ! | TGGTCCAATGAAATATAATT+GGG | - | chr5.3:6805677-6805696 | MS.gene21508:CDS | 25.0% |
| !! | AAAAGCATATTTCAAACAAG+TGG | - | chr5.3:6807006-6807025 | MS.gene21508:intron | 25.0% |
| !!! | ACTTGTTTGAAATATGCTTT+TGG | + | chr5.3:6807007-6807026 | None:intergenic | 25.0% |
| AATCCTGAATACATCTCATT+GGG | - | chr5.3:6806065-6806084 | MS.gene21508:CDS | 30.0% | |
| ACAGTATATGAGATCTTCTT+TGG | - | chr5.3:6806786-6806805 | MS.gene21508:CDS | 30.0% | |
| AGATATGATTCAAGTGCTTA+TGG | - | chr5.3:6807315-6807334 | MS.gene21508:CDS | 30.0% | |
| ATAAATAAGAGGTTGCTTGA+AGG | - | chr5.3:6807384-6807403 | MS.gene21508:CDS | 30.0% | |
| ATTAAGACCAAATTGTTTGC+AGG | - | chr5.3:6806524-6806543 | MS.gene21508:intron | 30.0% | |
| ATTGGTTAATCAAGTGAAGA+TGG | - | chr5.3:6807245-6807264 | MS.gene21508:CDS | 30.0% | |
| CAGTTAAGGAAAACAAGAAA+TGG | - | chr5.3:6805448-6805467 | MS.gene21508:CDS | 30.0% | |
| CTAGTTTACACAGACAAATT+AGG | - | chr5.3:6806035-6806054 | MS.gene21508:CDS | 30.0% | |
| CTTTATGTTGGACACATTAA+AGG | - | chr5.3:6807498-6807517 | MS.gene21508:CDS | 30.0% | |
| GCTTCCCAATTATATTTCAT+TGG | + | chr5.3:6805684-6805703 | None:intergenic | 30.0% | |
| TATAACACAAGGTTTCATGA+TGG | - | chr5.3:6807111-6807130 | MS.gene21508:intron | 30.0% | |
| TATGGAACTGATCTTTATGT+TGG | - | chr5.3:6807486-6807505 | MS.gene21508:CDS | 30.0% | |
| TCAATACAATCAATTTCCTG+AGG | - | chr5.3:6806870-6806889 | MS.gene21508:CDS | 30.0% | |
| TGAATTTCCTGCAAACAATT+TGG | + | chr5.3:6806534-6806553 | None:intergenic | 30.0% | |
| TGGACACATTAAAGGAATTA+AGG | - | chr5.3:6807506-6807525 | MS.gene21508:CDS | 30.0% | |
| ! | ATTGTATTGACCTGAATCAT+GGG | + | chr5.3:6806860-6806879 | None:intergenic | 30.0% |
| ! | GTTATGTCTTTTCATCAATG+TGG | - | chr5.3:6805756-6805775 | MS.gene21508:CDS | 30.0% |
| !! | AGGATACTGGATTTTTCAAA+AGG | - | chr5.3:6806890-6806909 | MS.gene21508:CDS | 30.0% |
| !! | GGATACTGGATTTTTCAAAA+GGG | - | chr5.3:6806891-6806910 | MS.gene21508:CDS | 30.0% |
| AAACACCAACTCTACAGTTA+AGG | - | chr5.3:6805434-6805453 | MS.gene21508:CDS | 35.0% | |
| AAACTATCTGCCAAAATAGC+TGG | - | chr5.3:6807033-6807052 | MS.gene21508:intron | 35.0% | |
| AATCAATTTCCTGAGGATAC+TGG | - | chr5.3:6806877-6806896 | MS.gene21508:CDS | 35.0% | |
| ACTTGATTAACCAATCCTTC+TGG | + | chr5.3:6807240-6807259 | None:intergenic | 35.0% | |
| AGAATTCCAATGCTATGACA+AGG | - | chr5.3:6806635-6806654 | MS.gene21508:intron | 35.0% | |
| AGATGGGTGATTAAGATACT+TGG | - | chr5.3:6806237-6806256 | MS.gene21508:intron | 35.0% | |
| ATGGAGATTTCTTCCTTGAT+TGG | - | chr5.3:6806935-6806954 | MS.gene21508:CDS | 35.0% | |
| CCAAAATAGCTGGAATTCAT+TGG | - | chr5.3:6807043-6807062 | MS.gene21508:intron | 35.0% | |
| GAATCCTGAATACATCTCAT+TGG | - | chr5.3:6806064-6806083 | MS.gene21508:CDS | 35.0% | |
| GCAAGAAACACATTTCACAA+AGG | - | chr5.3:6805410-6805429 | MS.gene21508:CDS | 35.0% | |
| GGTGAACAATTAGCATGATT+AGG | + | chr5.3:6807219-6807238 | None:intergenic | 35.0% | |
| GTTCAGATGGTACAAAAACA+TGG | - | chr5.3:6805717-6805736 | MS.gene21508:CDS | 35.0% | |
| TAATTGTTCACCAGAAGGAT+TGG | - | chr5.3:6807227-6807246 | MS.gene21508:CDS | 35.0% | |
| TGAAAATTGGAGGCAATTTG+TGG | - | chr5.3:6807407-6807426 | MS.gene21508:CDS | 35.0% | |
| TGTTTGCAGGAAATTCAAGT+GGG | - | chr5.3:6806537-6806556 | MS.gene21508:intron | 35.0% | |
| TTGAAAAATCCAGTATCCTC+AGG | + | chr5.3:6806889-6806908 | None:intergenic | 35.0% | |
| TTGGCAAATAGAGCCTAAAT+TGG | + | chr5.3:6805847-6805866 | None:intergenic | 35.0% | |
| TTGTTTGCAGGAAATTCAAG+TGG | - | chr5.3:6806536-6806555 | MS.gene21508:intron | 35.0% | |
| TTTACACAGACAAATTAGGG+AGG | - | chr5.3:6806039-6806058 | MS.gene21508:CDS | 35.0% | |
| TTTCACATGCATGGAAATGA+AGG | - | chr5.3:6807182-6807201 | MS.gene21508:CDS | 35.0% | |
| TTTGCTAGCATTTGTGCTAT+TGG | + | chr5.3:6807144-6807163 | None:intergenic | 35.0% | |
| TTTGTACCTTGTCATAGCAT+TGG | + | chr5.3:6806644-6806663 | None:intergenic | 35.0% | |
| ! | AGCAATGAATGCTAGTTTGA+TGG | - | chr5.3:6805590-6805609 | MS.gene21508:CDS | 35.0% |
| ! | ATGTCTTTTCATCAATGTGG+TGG | - | chr5.3:6805759-6805778 | MS.gene21508:CDS | 35.0% |
| ! | CCAATGAATTCCAGCTATTT+TGG | + | chr5.3:6807046-6807065 | None:intergenic | 35.0% |
| ! | GATTGTATTGACCTGAATCA+TGG | + | chr5.3:6806861-6806880 | None:intergenic | 35.0% |
| ! | GTGTCTAAGACGTTACAATA+AGG | + | chr5.3:6806354-6806373 | None:intergenic | 35.0% |
| ! | GTTTTCCTTAACTGTAGAGT+TGG | + | chr5.3:6805442-6805461 | None:intergenic | 35.0% |
| ! | TTGTATTGACCTGAATCATG+GGG | + | chr5.3:6806859-6806878 | None:intergenic | 35.0% |
| ! | TTTGTTGTGAGTATGTCTGA+TGG | - | chr5.3:6807432-6807451 | MS.gene21508:CDS | 35.0% |
| ! | TTTTCAAAAGGGAAGGAACA+TGG | - | chr5.3:6806902-6806921 | MS.gene21508:CDS | 35.0% |
| !! | ACTGGATTTTTCAAAAGGGA+AGG | - | chr5.3:6806895-6806914 | MS.gene21508:CDS | 35.0% |
| !! | ATATGCTTTTGGCTGATACT+AGG | + | chr5.3:6806996-6807015 | None:intergenic | 35.0% |
| !! | GAATCAGATTTTGAAAGCCT+TGG | + | chr5.3:6807465-6807484 | None:intergenic | 35.0% |
| !! | TCAAGCAAACTTGTTGAACA+TGG | - | chr5.3:6806961-6806980 | MS.gene21508:CDS | 35.0% |
| !!! | CTTCAGTTTTGAGGTTAGAT+GGG | - | chr5.3:6806221-6806240 | MS.gene21508:intron | 35.0% |
| AAGATGGCAACAAAGATTGC+AGG | - | chr5.3:6807261-6807280 | MS.gene21508:CDS | 40.0% | |
| AATGGCAACATCACAAACAC+CGG | + | chr5.3:6805531-6805550 | None:intergenic | 40.0% | |
| ACGGAAGCTTCTCATGTAAT+CGG | + | chr5.3:6806141-6806160 | None:intergenic | 40.0% | |
| ACTTGGAAGTTTCCAGGAAT+TGG | - | chr5.3:6806612-6806631 | MS.gene21508:intron | 40.0% | |
| CATCCCAATGAGATGTATTC+AGG | + | chr5.3:6806071-6806090 | None:intergenic | 40.0% | |
| CATGCAACTGAATTAACTGC+TGG | - | chr5.3:6807084-6807103 | MS.gene21508:intron | 40.0% | |
| CATGCTAATTGTTCACCAGA+AGG | - | chr5.3:6807222-6807241 | MS.gene21508:CDS | 40.0% | |
| CATGGGTGCTTGAAGAAATA+AGG | - | chr5.3:6806000-6806019 | MS.gene21508:CDS | 40.0% | |
| CATTGGAATTCTCCAATTCC+TGG | + | chr5.3:6806627-6806646 | None:intergenic | 40.0% | |
| CCATTAGACACGGTAACAAT+GGG | - | chr5.3:6805546-6805565 | MS.gene21508:CDS | 40.0% | |
| GCAAATAGAGCCTAAATTGG+TGG | + | chr5.3:6805844-6805863 | None:intergenic | 40.0% | |
| GCACAAATGCTAGCAAAACA+TGG | - | chr5.3:6807147-6807166 | MS.gene21508:intron | 40.0% | |
| GGAACATGGAACACAGAATA+TGG | - | chr5.3:6806916-6806935 | MS.gene21508:CDS | 40.0% | |
| GGTTGCTTGAAGGTGAAAAT+TGG | - | chr5.3:6807394-6807413 | MS.gene21508:CDS | 40.0% | |
| GTTTGCTTGAGTACCAATCA+AGG | + | chr5.3:6806951-6806970 | None:intergenic | 40.0% | |
| TAATCGGAGTAGACTTGAAG+TGG | + | chr5.3:6806125-6806144 | None:intergenic | 40.0% | |
| TCCAAGTTCCATCAGTTTCA+GGG | + | chr5.3:6806599-6806618 | None:intergenic | 40.0% | |
| TGCTTGAAGGTGAAAATTGG+AGG | - | chr5.3:6807397-6807416 | MS.gene21508:CDS | 40.0% | |
| TGTCTGTGTAAACTAGCTCA+GGG | + | chr5.3:6806031-6806050 | None:intergenic | 40.0% | |
| TGTGATGTTGCCATTAGACA+CGG | - | chr5.3:6805536-6805555 | MS.gene21508:CDS | 40.0% | |
| TTCCAAGTTCCATCAGTTTC+AGG | + | chr5.3:6806600-6806619 | None:intergenic | 40.0% | |
| TTGTCTGTGTAAACTAGCTC+AGG | + | chr5.3:6806032-6806051 | None:intergenic | 40.0% | |
| ! | AAGGAGTAATGGTTGATGCT+TGG | - | chr5.3:6805634-6805653 | MS.gene21508:CDS | 40.0% |
| ! | AGTAATGGTTGATGCTTGGT+GGG | - | chr5.3:6805638-6805657 | MS.gene21508:CDS | 40.0% |
| ! | CAACTTGTGCTTCAGTTTTG+AGG | - | chr5.3:6806212-6806231 | MS.gene21508:intron | 40.0% |
| ! | CATCAATGTGGTGGAAATGT+TGG | - | chr5.3:6805768-6805787 | MS.gene21508:CDS | 40.0% |
| ! | CTGCTGGTTACTATAACACA+AGG | - | chr5.3:6807100-6807119 | MS.gene21508:intron | 40.0% |
| ! | CTTATTTCTTCAAGCACCCA+TGG | + | chr5.3:6806002-6806021 | None:intergenic | 40.0% |
| ! | TGGGGTTTGGTTGAAAAAGA+TGG | - | chr5.3:6805657-6805676 | MS.gene21508:CDS | 40.0% |
| ! | TTATGCTGAGCTTGTTCAGA+TGG | - | chr5.3:6805704-6805723 | MS.gene21508:CDS | 40.0% |
| !! | GGTCAAGTTTTGTCTACAAG+TGG | - | chr5.3:6807336-6807355 | MS.gene21508:CDS | 40.0% |
| !! | TGCTGATTCGAATAGAGTAC+CGG | - | chr5.3:6805509-6805528 | MS.gene21508:CDS | 40.0% |
| !!! | GCTTCAGTTTTGAGGTTAGA+TGG | - | chr5.3:6806220-6806239 | MS.gene21508:intron | 40.0% |
| AAGAAAGAGTGGGGAACTAG+TGG | - | chr5.3:6806832-6806851 | MS.gene21508:CDS | 45.0% | |
| ACACAGACAAATTAGGGAGG+AGG | - | chr5.3:6806042-6806061 | MS.gene21508:CDS | 45.0% | |
| ACCCTGAAACTGATGGAACT+TGG | - | chr5.3:6806595-6806614 | MS.gene21508:intron | 45.0% | |
| ATAGCATTCCTCTACCACCA+TGG | - | chr5.3:6805982-6806001 | MS.gene21508:CDS | 45.0% | |
| ATGGCAACAAAGATTGCAGG+TGG | - | chr5.3:6807264-6807283 | MS.gene21508:CDS | 45.0% | |
| ATTTCTTCAAGCACCCATGG+TGG | + | chr5.3:6805999-6806018 | None:intergenic | 45.0% | |
| CAGGAAATTCAAGTGGGACT+AGG | - | chr5.3:6806543-6806562 | MS.gene21508:intron | 45.0% | |
| CCACTCTTTCTTCCCAATTG+CGG | + | chr5.3:6806824-6806843 | None:intergenic | 45.0% | |
| CCATCAGTTTCAGGGTAAGA+TGG | + | chr5.3:6806591-6806610 | None:intergenic | 45.0% | |
| CCATCTTACCCTGAAACTGA+TGG | - | chr5.3:6806588-6806607 | MS.gene21508:intron | 45.0% | |
| CCCATTGTTACCGTGTCTAA+TGG | + | chr5.3:6805549-6805568 | None:intergenic | 45.0% | |
| CGCAATTGGGAAGAAAGAGT+GGG | - | chr5.3:6806822-6806841 | MS.gene21508:CDS | 45.0% | |
| CTCTATTCGAATCAGCATCG+TGG | + | chr5.3:6805506-6805525 | None:intergenic | 45.0% | |
| GATGGAACTTGGAAGTTTCC+AGG | - | chr5.3:6806606-6806625 | MS.gene21508:intron | 45.0% | |
| GCAATTGGGAAGAAAGAGTG+GGG | - | chr5.3:6806823-6806842 | MS.gene21508:CDS | 45.0% | |
| GCCATTAGACACGGTAACAA+TGG | - | chr5.3:6805545-6805564 | MS.gene21508:CDS | 45.0% | |
| GTTGTGAGTATGTCTGATGG+TGG | - | chr5.3:6807435-6807454 | MS.gene21508:CDS | 45.0% | |
| TAGCATTCCTCTACCACCAT+GGG | - | chr5.3:6805983-6806002 | MS.gene21508:CDS | 45.0% | |
| TCGTGGTTATGAGCAATCGA+TGG | + | chr5.3:6805489-6805508 | None:intergenic | 45.0% | |
| TGCTGGAGTTGAAGGAGTAA+TGG | - | chr5.3:6805623-6805642 | MS.gene21508:CDS | 45.0% | |
| TTAGACACGGTAACAATGGG+AGG | - | chr5.3:6805549-6805568 | MS.gene21508:CDS | 45.0% | |
| ! | GAGTAATGGTTGATGCTTGG+TGG | - | chr5.3:6805637-6805656 | MS.gene21508:CDS | 45.0% |
| ! | GTAATGGTTGATGCTTGGTG+GGG | - | chr5.3:6805639-6805658 | MS.gene21508:CDS | 45.0% |
| ! | TTGATGGCATTGAAGAGTGC+TGG | - | chr5.3:6805606-6805625 | MS.gene21508:CDS | 45.0% |
| !! | GAAATGTTGGTGACTCTTGC+AGG | - | chr5.3:6805781-6805800 | MS.gene21508:CDS | 45.0% |
| !! | TGTCTGATGGTGGTAAACCA+AGG | - | chr5.3:6807445-6807464 | MS.gene21508:CDS | 45.0% |
| !! | TTGAAGAGTGCTGGAGTTGA+AGG | - | chr5.3:6805615-6805634 | MS.gene21508:CDS | 45.0% |
| AAGCATCAGCTGCCGCAATT+GGG | - | chr5.3:6806809-6806828 | MS.gene21508:CDS | 50.0% | |
| AAGTGGGACTAGGTCCATGT+GGG | - | chr5.3:6806553-6806572 | MS.gene21508:intron | 50.0% | |
| ATTGCAGGTGGTGAACTTGC+TGG | - | chr5.3:6807276-6807295 | MS.gene21508:CDS | 50.0% | |
| CCGCAATTGGGAAGAAAGAG+TGG | - | chr5.3:6806821-6806840 | MS.gene21508:CDS | 50.0% | |
| GATTCAGTGCCTGTTCTAGC+AGG | - | chr5.3:6806092-6806111 | MS.gene21508:CDS | 50.0% | |
| GGAGTTCTTCCTGCTAGAAC+AGG | + | chr5.3:6806104-6806123 | None:intergenic | 50.0% | |
| GGATATCTCAACTCCCCACA+TGG | + | chr5.3:6806570-6806589 | None:intergenic | 50.0% | |
| ! | ACTAGTGGACCCCATGATTC+AGG | - | chr5.3:6806847-6806866 | MS.gene21508:CDS | 50.0% |
| AGTGGGACTAGGTCCATGTG+GGG | - | chr5.3:6806554-6806573 | MS.gene21508:intron | 55.0% | |
| CAAGTGGGACTAGGTCCATG+TGG | - | chr5.3:6806552-6806571 | MS.gene21508:intron | 55.0% | |
| TCAAGCACCCATGGTGGTAG+AGG | + | chr5.3:6805993-6806012 | None:intergenic | 55.0% | |
| ! | GAAGCATCAGCTGCCGCAAT+TGG | - | chr5.3:6806808-6806827 | MS.gene21508:CDS | 55.0% |
| ! | GGTTGATGCTTGGTGGGGTT+TGG | - | chr5.3:6805644-6805663 | MS.gene21508:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 6805408 | 6807563 | 6805408 | ID=MS.gene21508 |
| chr5.3 | mRNA | 6805408 | 6807563 | 6805408 | ID=MS.gene21508.t1;Parent=MS.gene21508 |
| chr5.3 | exon | 6807169 | 6807563 | 6807169 | ID=MS.gene21508.t1.exon1;Parent=MS.gene21508.t1 |
| chr5.3 | CDS | 6807169 | 6807563 | 6807169 | ID=cds.MS.gene21508.t1;Parent=MS.gene21508.t1 |
| chr5.3 | exon | 6806775 | 6806985 | 6806775 | ID=MS.gene21508.t1.exon2;Parent=MS.gene21508.t1 |
| chr5.3 | CDS | 6806775 | 6806985 | 6806775 | ID=cds.MS.gene21508.t1;Parent=MS.gene21508.t1 |
| chr5.3 | exon | 6806315 | 6806425 | 6806315 | ID=MS.gene21508.t1.exon3;Parent=MS.gene21508.t1 |
| chr5.3 | CDS | 6806315 | 6806425 | 6806315 | ID=cds.MS.gene21508.t1;Parent=MS.gene21508.t1 |
| chr5.3 | exon | 6805408 | 6806181 | 6805408 | ID=MS.gene21508.t1.exon4;Parent=MS.gene21508.t1 |
| chr5.3 | CDS | 6805408 | 6806181 | 6805408 | ID=cds.MS.gene21508.t1;Parent=MS.gene21508.t1 |
| Gene Sequence |
| Protein sequence |
