Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21614.t1 | RHN81198.1 | 90.1 | 668 | 44 | 2 | 1 | 646 | 65 | 732 | 1.40E-261 | 912.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21614.t1 | Q9ZVT8 | 30.1 | 742 | 409 | 16 | 6 | 642 | 83 | 819 | 1.3e-58 | 229.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21614.t1 | G7I2V7 | 90.1 | 668 | 44 | 2 | 1 | 646 | 99 | 766 | 1.0e-261 | 912.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene21614 | 0.801461 | 8.91E-49 | -1.69E-46 |
| MS.gene049255 | MS.gene21614 | 0.851221 | 1.02E-60 | -1.69E-46 |
| MS.gene049341 | MS.gene21614 | 0.841673 | 4.12E-58 | -1.69E-46 |
| MS.gene050277 | MS.gene21614 | 0.832242 | 1.06E-55 | -1.69E-46 |
| MS.gene050689 | MS.gene21614 | 0.84388 | 1.07E-58 | -1.69E-46 |
| MS.gene050815 | MS.gene21614 | 0.818895 | 1.54E-52 | -1.69E-46 |
| MS.gene051328 | MS.gene21614 | 0.837962 | 3.81E-57 | -1.69E-46 |
| MS.gene05134 | MS.gene21614 | 0.815972 | 7.03E-52 | -1.69E-46 |
| MS.gene052611 | MS.gene21614 | 0.806281 | 8.88E-50 | -1.69E-46 |
| MS.gene053008 | MS.gene21614 | 0.81371 | 2.23E-51 | -1.69E-46 |
| MS.gene055162 | MS.gene21614 | 0.831873 | 1.30E-55 | -1.69E-46 |
| MS.gene055512 | MS.gene21614 | 0.839514 | 1.51E-57 | -1.69E-46 |
| MS.gene055912 | MS.gene21614 | 0.802652 | 5.07E-49 | -1.69E-46 |
| MS.gene056553 | MS.gene21614 | 0.802839 | 4.64E-49 | -1.69E-46 |
| MS.gene056601 | MS.gene21614 | 0.82385 | 1.11E-53 | -1.69E-46 |
| MS.gene056760 | MS.gene21614 | 0.806287 | 8.85E-50 | -1.69E-46 |
| MS.gene057057 | MS.gene21614 | 0.809942 | 1.47E-50 | -1.69E-46 |
| MS.gene057140 | MS.gene21614 | 0.833556 | 4.98E-56 | -1.69E-46 |
| MS.gene057234 | MS.gene21614 | 0.808158 | 3.55E-50 | -1.69E-46 |
| MS.gene058055 | MS.gene21614 | 0.815885 | 7.35E-52 | -1.69E-46 |
| MS.gene058906 | MS.gene21614 | 0.826422 | 2.74E-54 | -1.69E-46 |
| MS.gene05978 | MS.gene21614 | 0.869024 | 4.22E-66 | -1.69E-46 |
| MS.gene059937 | MS.gene21614 | 0.821867 | 3.21E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21614.t1 | MTR_1g012335 | 53.922 | 102 | 41 | 3 | 367 | 467 | 146 | 242 | 2.18e-19 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAATTTGACTATT+CGG | - | 10953:1984-2003 | MS.gene21614:intergenic | 10.0% |
| !! | TTCAAAAAAAAAAAAGTTTA+TGG | + | 10953:2848-2867 | MS.gene21614:intron | 10.0% |
| !!! | AAACTTTTTTTTTTTTGAAA+CGG | - | 10953:2847-2866 | MS.gene21614:intergenic | 10.0% |
| !!! | AAATTTTTTGATTAGTTTAT+TGG | + | 10953:3143-3162 | MS.gene21614:intron | 10.0% |
| !!! | TTTATTAGTTTACATATACA+TGG | + | 10953:2255-2274 | MS.gene21614:intron | 15.0% |
| !!! | TTTTTAGATTTACATATACA+TGG | + | 10953:2000-2019 | MS.gene21614:intron | 15.0% |
| !!! | AAAAAGTTTATGGTTTTATG+TGG | + | 10953:2858-2877 | MS.gene21614:intron | 20.0% |
| !!! | ACTTCACAGTTTAATTTTTT+TGG | + | 10953:2236-2255 | MS.gene21614:intron | 20.0% |
| !!! | ATGTTTTCACCATTTAAATA+AGG | - | 10953:3378-3397 | MS.gene21614:intergenic | 20.0% |
| !!! | CTTCACAGTTTAATTTTTTT+GGG | + | 10953:2237-2256 | MS.gene21614:intron | 20.0% |
| !!! | TATGATTTCTGTTTTTATGA+TGG | + | 10953:3307-3326 | MS.gene21614:intron | 20.0% |
| !!! | TGATTAGTTTATTGGTTTAT+AGG | + | 10953:3151-3170 | MS.gene21614:intron | 20.0% |
| !!! | TTCACAGTTTAATTTTTTTG+GGG | + | 10953:2493-2512 | MS.gene21614:intron | 20.0% |
| ! | AAAAAATTACAAGGGGAAAT+CGG | - | 10953:2766-2785 | MS.gene21614:intergenic | 25.0% |
| ! | AGTGTCAATTGTAAACAATT+TGG | - | 10953:3333-3352 | MS.gene21614:intergenic | 25.0% |
| ! | ATATATCATCATTTGTCCTA+TGG | - | 10953:3106-3125 | MS.gene21614:intergenic | 25.0% |
| ! | GTGGAGAAAAAAAATTACAA+GGG | - | 10953:2774-2793 | MS.gene21614:intergenic | 25.0% |
| ! | TAAAAATTTGACTATTCGGA+AGG | - | 10953:1980-1999 | MS.gene21614:intergenic | 25.0% |
| ! | TAAATGGTGAAAACATTACA+GGG | + | 10953:3382-3401 | MS.gene21614:intron | 25.0% |
| ! | TGGAGAAAAAAAATTACAAG+GGG | - | 10953:2773-2792 | MS.gene21614:intergenic | 25.0% |
| ! | TTAAATGGTGAAAACATTAC+AGG | + | 10953:3381-3400 | MS.gene21614:intron | 25.0% |
| !! | AATCATCATTGGTTGAAATA+CGG | - | 10953:1071-1090 | MS.gene21614:intergenic | 25.0% |
| !! | ACTGAACATTTAACTTTGAT+GGG | - | 10953:741-760 | MS.gene21614:intergenic | 25.0% |
| !! | ATGCTACTTCCTTATTTAAA+TGG | + | 10953:3366-3385 | MS.gene21614:intron | 25.0% |
| !! | GCTTGTTGGTTAATAATATT+TGG | + | 10953:2821-2840 | MS.gene21614:intron | 25.0% |
| !! | TTTTAGTAATGCTATCAAGA+AGG | + | 10953:361-380 | MS.gene21614:intron | 25.0% |
| !!! | CTGGTTGAATTCATTTTAAT+TGG | - | 10953:2165-2184 | MS.gene21614:intergenic | 25.0% |
| !!! | TTGCTTTTGATTATTTTCCA+TGG | - | 10953:1502-1521 | MS.gene21614:intergenic | 25.0% |
| !!! | TTTTCTGTTTCTGTTTTTTG+TGG | + | 10953:2522-2541 | MS.gene21614:intron | 25.0% |
| AAAGTAAAAACAGTATGCAC+AGG | - | 10953:2954-2973 | MS.gene21613:intergenic | 30.0% | |
| AACACACTGAATACTTTGAA+GGG | + | 10953:483-502 | MS.gene21614:CDS | 30.0% | |
| AATGTTCAGTCTGATATGAT+TGG | + | 10953:751-770 | MS.gene21614:CDS | 30.0% | |
| AGAAAACAAGAAATCTGAGA+CGG | + | 10953:3636-3655 | MS.gene21614:CDS | 30.0% | |
| AGATTCTGATTTACTTTCCT+GGG | - | 10953:809-828 | MS.gene21614:intergenic | 30.0% | |
| ATATACCATCATTTGTCCTA+TGG | - | 10953:2211-2230 | MS.gene21614:intergenic | 30.0% | |
| ATCTGATTGAGCTAAAGTAT+AGG | + | 10953:2892-2911 | MS.gene21614:intron | 30.0% | |
| CAGTTAGTAATTTATCACTC+AGG | + | 10953:2924-2943 | MS.gene21614:intron | 30.0% | |
| GGTGGAGAAAAAAAATTACA+AGG | - | 10953:2775-2794 | MS.gene21614:intergenic | 30.0% | |
| TACCTACTCTATTATTCTGA+CGG | + | 10953:1893-1912 | MS.gene21614:intron | 30.0% | |
| TAGATTCTGATTTACTTTCC+TGG | - | 10953:810-829 | MS.gene21614:intergenic | 30.0% | |
| TGAGTCAATAATTATCACTC+AGG | + | 10953:3221-3240 | MS.gene21614:intron | 30.0% | |
| TGTAGACAATATTTGTGAGA+GGG | - | 10953:464-483 | MS.gene21614:intergenic | 30.0% | |
| TTGTAGACAATATTTGTGAG+AGG | - | 10953:465-484 | MS.gene21614:intergenic | 30.0% | |
| TTGTCCTATGGAAAATCTAA+AGG | - | 10953:2199-2218 | MS.gene21614:intergenic | 30.0% | |
| ! | ACTAACTCCTTTTGTATTTG+AGG | - | 10953:1034-1053 | MS.gene21614:intergenic | 30.0% |
| ! | ATTTTCCATAGGACAAATGA+TGG | + | 10953:2203-2222 | MS.gene21614:intron | 30.0% |
| ! | CATTCCTTTAGATTTTCCAT+AGG | + | 10953:2192-2211 | MS.gene21614:intron | 30.0% |
| ! | CTGAACATTTAACTTTGATG+GGG | - | 10953:740-759 | MS.gene21614:intergenic | 30.0% |
| ! | GACTGAACATTTAACTTTGA+TGG | - | 10953:742-761 | MS.gene21614:intergenic | 30.0% |
| ! | GTAATTTTGAACCTTTTGAG+CGG | - | 10953:1202-1221 | MS.gene21614:intergenic | 30.0% |
| ! | TGAACATTTAACTTTGATGG+GGG | - | 10953:739-758 | MS.gene21614:intergenic | 30.0% |
| !! | ATCAAGAAGGTTGTTGATTT+AGG | + | 10953:374-393 | MS.gene21614:intron | 30.0% |
| !!! | TCTTAGGAGTGGTTTTTTAA+GGG | + | 10953:2709-2728 | MS.gene21614:intron | 30.0% |
| !!! | TTCTTAGGAGTGGTTTTTTA+AGG | + | 10953:2708-2727 | MS.gene21614:intron | 30.0% |
| !!! | TTTTGAAATACAAAGTCTGC+AGG | - | 10953:524-543 | MS.gene21614:intergenic | 30.0% |
| !!! | TTTTTTAACAGTGAGACTGA+AGG | - | 10953:2097-2116 | MS.gene21614:intergenic | 30.0% |
| AAATCTTCTAGCCAATACTG+AGG | + | 10953:1767-1786 | MS.gene21614:CDS | 35.0% | |
| AACAGTAACTGAAGCAATGT+GGG | + | 10953:612-631 | MS.gene21614:CDS | 35.0% | |
| AACTTTCACAAATATCTCCC+AGG | + | 10953:789-808 | MS.gene21614:CDS | 35.0% | |
| AAGAGTTTACATCAGTGCTT+AGG | + | 10953:863-882 | MS.gene21614:CDS | 35.0% | |
| AAGGTTCAAAATTACTGTGC+TGG | + | 10953:1207-1226 | MS.gene21614:CDS | 35.0% | |
| AATTCCACATACCTCAGTAT+TGG | - | 10953:1781-1800 | MS.gene21614:intergenic | 35.0% | |
| ACAAAAGGAGTTAGTATAGC+AGG | + | 10953:1039-1058 | MS.gene21614:CDS | 35.0% | |
| ACCATGAGTGTTTAACTCAT+AGG | + | 10953:3031-3050 | MS.gene21614:intron | 35.0% | |
| AGAGTTTACATCAGTGCTTA+GGG | + | 10953:864-883 | MS.gene21614:CDS | 35.0% | |
| AGCAGTTACTGCATATAGTT+TGG | + | 10953:549-568 | MS.gene21614:intron | 35.0% | |
| AGGATTCATGCCAAATTTCT+TGG | + | 10953:3856-3875 | MS.gene21614:CDS | 35.0% | |
| ATAGGCACCTAAAAAAGACA+CGG | + | 10953:1940-1959 | MS.gene21614:intron | 35.0% | |
| ATGAAAGAACCTAAAGCTTG+TGG | + | 10953:901-920 | MS.gene21614:CDS | 35.0% | |
| ATGAATCCTAAATTCGATGG+TGG | - | 10953:3845-3864 | MS.gene21614:intergenic | 35.0% | |
| ATGAGTTAAACACTCATGGT+TGG | - | 10953:3031-3050 | MS.gene21614:intergenic | 35.0% | |
| ATTACAGGGTAGAGTGAAAA+AGG | + | 10953:3396-3415 | MS.gene21614:intron | 35.0% | |
| ATTCCCTTTAATGAGGCTTT+GGG | + | 10953:1231-1250 | MS.gene21614:CDS | 35.0% | |
| CAAAATAAGTACTCCATCTG+TGG | + | 10953:3609-3628 | MS.gene21614:CDS | 35.0% | |
| CAACACACTGAATACTTTGA+AGG | + | 10953:482-501 | MS.gene21614:CDS | 35.0% | |
| CATTGCTTCAGTTACTGTTA+AGG | - | 10953:611-630 | MS.gene21614:intergenic | 35.0% | |
| CCAAATCAGAAAATGAAACG+TGG | + | 10953:1006-1025 | MS.gene21614:CDS | 35.0% | |
| GGACTTACTGATGAGTAATT+TGG | + | 10953:332-351 | MS.gene21614:CDS | 35.0% | |
| GGATTCATGCCAAATTTCTT+GGG | + | 10953:3857-3876 | MS.gene21614:CDS | 35.0% | |
| GTCAGAATAATAGAGTAGGT+AGG | - | 10953:1894-1913 | MS.gene21614:intergenic | 35.0% | |
| TAACAGTAACTGAAGCAATG+TGG | + | 10953:611-630 | MS.gene21614:CDS | 35.0% | |
| TACCTGCATAACCTTCTTAT+TGG | - | 10953:1355-1374 | MS.gene21614:intergenic | 35.0% | |
| TATAGTTTGGTAGAGATGCT+CGG | + | 10953:562-581 | MS.gene21614:intron | 35.0% | |
| TATTCCCTTTAATGAGGCTT+TGG | + | 10953:1230-1249 | MS.gene21614:CDS | 35.0% | |
| TCTAAAGGAATGCAAAACAC+TGG | - | 10953:2184-2203 | MS.gene21614:intergenic | 35.0% | |
| TGAGCTAAAGTATAGGAACA+AGG | + | 10953:2899-2918 | MS.gene21614:intron | 35.0% | |
| TGAGCTAAAGTATAGGAACA+GGG | + | 10953:2899-2918 | MS.gene21614:intron | 35.0% | |
| TTGAGCTAAAGTATAGGAAC+AGG | + | 10953:2898-2917 | MS.gene21614:intron | 35.0% | |
| TTGCATCAGGAGATAGAAAA+GGG | + | 10953:1741-1760 | MS.gene21614:CDS | 35.0% | |
| ! | AAAGTTAGCTAACTTGCATC+AGG | + | 10953:1728-1747 | MS.gene21614:CDS | 35.0% |
| ! | ACTGAATACTTTGAAGGGAA+AGG | + | 10953:488-507 | MS.gene21614:CDS | 35.0% |
| ! | CCACGTTTCATTTTCTGATT+TGG | - | 10953:1009-1028 | MS.gene21614:intergenic | 35.0% |
| ! | GCACTGATGTAAACTCTTTA+TGG | - | 10953:861-880 | MS.gene21614:intergenic | 35.0% |
| ! | TTGTTTTCTTTCACCACAGA+TGG | - | 10953:3625-3644 | MS.gene21614:intergenic | 35.0% |
| !! | AAGAAGGTTGTTGATTTAGG+AGG | + | 10953:377-396 | MS.gene21614:intron | 35.0% |
| !! | CACAGATGGAGTACTTATTT+TGG | - | 10953:3611-3630 | MS.gene21614:intergenic | 35.0% |
| !! | TTCTGATTTGGAACTTCAGA+TGG | - | 10953:997-1016 | MS.gene21614:intergenic | 35.0% |
| !!! | CTTAGGAGTGGTTTTTTAAG+GGG | + | 10953:2710-2729 | MS.gene21614:intron | 35.0% |
| !!! | GAATGGCTTAGGTTTTGATT+TGG | - | 10953:1172-1191 | MS.gene21614:intergenic | 35.0% |
| !!! | GTTTAATTTTTTTGGGGTGC+TGG | + | 10953:2499-2518 | MS.gene21614:intron | 35.0% |
| ACAGAAGCAATCAGCAACTA+AGG | - | 10953:2625-2644 | MS.gene21614:intergenic | 40.0% | |
| AGTAGATGTTGCATCCTTTG+TGG | - | 10953:1130-1149 | MS.gene21614:intergenic | 40.0% | |
| CACTTCTTCCATACTCATTC+TGG | + | 10953:1533-1552 | MS.gene21614:CDS | 40.0% | |
| CAGAATGAGTATGGAAGAAG+TGG | - | 10953:1535-1554 | MS.gene21614:intergenic | 40.0% | |
| CAGTCAAGAAATGGCTGAAA+TGG | + | 10953:403-422 | MS.gene21614:CDS | 40.0% | |
| CTTGCATCAGGAGATAGAAA+AGG | + | 10953:1740-1759 | MS.gene21614:CDS | 40.0% | |
| GACAGAAAAAATCCTCACAC+AGG | + | 10953:3429-3448 | MS.gene21614:CDS | 40.0% | |
| GACCGTCAGAATAATAGAGT+AGG | - | 10953:1898-1917 | MS.gene21614:intergenic | 40.0% | |
| GCCTATGAGTTAAACACTCA+TGG | - | 10953:3035-3054 | MS.gene21614:intergenic | 40.0% | |
| GCTGTGCTAAGACTAAAATC+TGG | + | 10953:3583-3602 | MS.gene21614:CDS | 40.0% | |
| GCTTCAGTTACTGTTAAGGA+GGG | - | 10953:607-626 | MS.gene21614:intergenic | 40.0% | |
| GGCATGAATCCTAAATTCGA+TGG | - | 10953:3848-3867 | MS.gene21614:intergenic | 40.0% | |
| GGGTAAAGCTGAATCATCAT+TGG | - | 10953:1082-1101 | MS.gene21614:intergenic | 40.0% | |
| GTAGATGTTGCATCCTTTGT+GGG | - | 10953:1129-1148 | MS.gene21614:intergenic | 40.0% | |
| GTAGGTAGGTACTCAAGATA+CGG | - | 10953:1880-1899 | MS.gene21614:intergenic | 40.0% | |
| TACAAGGGACTTCCTTGAAA+CGG | - | 10953:429-448 | MS.gene21614:intergenic | 40.0% | |
| TAGAAGAGAATGCTGAGAAG+AGG | + | 10953:1457-1476 | MS.gene21614:CDS | 40.0% | |
| TAGCCATGTACTGCAAACAT+AGG | + | 10953:2033-2052 | MS.gene21614:intron | 40.0% | |
| TAGGTAGGTACTCAAGATAC+GGG | - | 10953:1879-1898 | MS.gene21614:intergenic | 40.0% | |
| TAGTCAACTGCAGGAATATG+TGG | + | 10953:3531-3550 | MS.gene21614:CDS | 40.0% | |
| TCACCTATGTTTGCAGTACA+CGG | - | 10953:2039-2058 | MS.gene21614:intergenic | 40.0% | |
| TCACCTATGTTTGCAGTACA+TGG | - | 10953:2039-2058 | MS.gene21614:intergenic | 40.0% | |
| TCATGGAGCTCATTGCAATT+CGG | - | 10953:3787-3806 | MS.gene21614:intergenic | 40.0% | |
| TGAAGATTGGAAGGATCCTA+TGG | + | 10953:296-315 | MS.gene21614:CDS | 40.0% | |
| TGCATCAGGAGATAGAAAAG+GGG | + | 10953:1742-1761 | MS.gene21614:CDS | 40.0% | |
| TGCTGGTATTCCCTTTAATG+AGG | + | 10953:1224-1243 | MS.gene21614:CDS | 40.0% | |
| TGCTTCAGTTACTGTTAAGG+AGG | - | 10953:608-627 | MS.gene21614:intergenic | 40.0% | |
| TTCTTCCATACTCATTCTGG+AGG | + | 10953:1536-1555 | MS.gene21614:CDS | 40.0% | |
| TTGCCCAAAGCCTCATTAAA+GGG | - | 10953:1237-1256 | MS.gene21614:intergenic | 40.0% | |
| ! | GTTTTGTGTGTAGTGACTGT+TGG | + | 10953:2646-2665 | MS.gene21614:intron | 40.0% |
| ! | TGATTTGGAACTTCAGATGG+TGG | - | 10953:994-1013 | MS.gene21614:intergenic | 40.0% |
| ! | TTAGTTGCTGATTGCTTCTG+TGG | + | 10953:2624-2643 | MS.gene21614:intron | 40.0% |
| !! | GATTTGGCTGTTTTCACTGT+TGG | - | 10953:1156-1175 | MS.gene21614:intergenic | 40.0% |
| !! | GCTAGTTCTTTTCTTAGGAG+TGG | + | 10953:2698-2717 | MS.gene21614:intron | 40.0% |
| !! | GGGTTGCTAGTTCTTTTCTT+AGG | + | 10953:2693-2712 | MS.gene21614:intron | 40.0% |
| !!! | TCAGCAGTTTTGCTGTTTTC+TGG | + | 10953:2587-2606 | MS.gene21614:intron | 40.0% |
| !!! | TGGAGAGAGCAGTTTTGTTT+CGG | + | 10953:2542-2561 | MS.gene21614:intron | 40.0% |
| !!! | TTAAGGAGGGTTTTAGTTCC+CGG | - | 10953:594-613 | MS.gene21614:intergenic | 40.0% |
| AATGAGCTCCATGAGAAGCA+AGG | + | 10953:3793-3812 | MS.gene21614:CDS | 45.0% | |
| ACACGAGTCATTTCACCAGA+AGG | + | 10953:661-680 | MS.gene21614:CDS | 45.0% | |
| ACCTAAAGCTTGTGGCAAAG+CGG | + | 10953:909-928 | MS.gene21614:CDS | 45.0% | |
| ACTAGCTGCCTTCTTTCTGA+CGG | - | 10953:3515-3534 | MS.gene21614:intergenic | 45.0% | |
| AGATAAGCTTCGCAAGCTTC+AGG | + | 10953:1377-1396 | MS.gene21614:CDS | 45.0% | |
| AGCACAAGAATTGCAGGATG+AGG | + | 10953:1308-1327 | MS.gene21614:CDS | 45.0% | |
| AGGAGGCTACAGTCAAGAAA+TGG | + | 10953:394-413 | MS.gene21614:intron | 45.0% | |
| ATCTCGAGCACAAGAATTGC+AGG | + | 10953:1302-1321 | MS.gene21614:CDS | 45.0% | |
| ATGAGCTCCATGAGAAGCAA+GGG | + | 10953:3794-3813 | MS.gene21614:CDS | 45.0% | |
| ATTCTCCTCTTCCGCTCAAA+AGG | + | 10953:1188-1207 | MS.gene21614:CDS | 45.0% | |
| CAAGGCGCACTAATAAGCTT+GGG | - | 10953:2796-2815 | MS.gene21614:intergenic | 45.0% | |
| CACCAACTCTTTCTCTAGCA+AGG | - | 10953:1571-1590 | MS.gene21614:intergenic | 45.0% | |
| CAGCATGGTAAAGCTAGAGA+AGG | + | 10953:3555-3574 | MS.gene21614:CDS | 45.0% | |
| CGCTGCAAAATTACCCACAA+AGG | + | 10953:1113-1132 | MS.gene21614:CDS | 45.0% | |
| CGTGGCTCCTCAAATACAAA+AGG | + | 10953:1024-1043 | MS.gene21614:CDS | 45.0% | |
| CTACTGCTGCCCAAGAAATT+TGG | - | 10953:3869-3888 | MS.gene21614:intergenic | 45.0% | |
| CTAGCCAATACTGAGGTATG+TGG | + | 10953:1774-1793 | MS.gene21614:intron | 45.0% | |
| CTTGCCCAAAGCCTCATTAA+AGG | - | 10953:1238-1257 | MS.gene21614:intergenic | 45.0% | |
| CTTTGCCTCCAGAATGAGTA+TGG | - | 10953:1544-1563 | MS.gene21614:intergenic | 45.0% | |
| CTTTGGGCAAGTTTATCCCA+CGG | + | 10953:1247-1266 | MS.gene21614:CDS | 45.0% | |
| GAAAAGAACTAGCAACCCAC+TGG | - | 10953:2691-2710 | MS.gene21614:intergenic | 45.0% | |
| GAATGACTGGGCCAATAAGA+AGG | + | 10953:1341-1360 | MS.gene21614:CDS | 45.0% | |
| GATGATTCAGCTTTACCCGA+AGG | + | 10953:1084-1103 | MS.gene21614:CDS | 45.0% | |
| GCAAAACTGCTGACCGAAAA+AGG | - | 10953:2580-2599 | MS.gene21614:intergenic | 45.0% | |
| GCAAACATAGGTGAGATGAG+CGG | + | 10953:2045-2064 | MS.gene21614:intron | 45.0% | |
| GGAAAGCTTACAAGCGTAAG+TGG | + | 10953:943-962 | MS.gene21614:CDS | 45.0% | |
| GGCAAAGCGGGTGTTAAATT+AGG | + | 10953:922-941 | MS.gene21614:CDS | 45.0% | |
| GGCAAGTTATCAACAAGCAC+TGG | + | 10953:1620-1639 | MS.gene21614:CDS | 45.0% | |
| GGCCAATAAGAAGGTTATGC+AGG | + | 10953:1350-1369 | MS.gene21614:CDS | 45.0% | |
| GTAGGACCACCATCGAATTT+AGG | + | 10953:3836-3855 | MS.gene21614:CDS | 45.0% | |
| GTCCTTGCTAGAGAAAGAGT+TGG | + | 10953:1566-1585 | MS.gene21614:CDS | 45.0% | |
| TAAAGTATGCAGCCTGTGTG+AGG | - | 10953:3444-3463 | MS.gene21614:intergenic | 45.0% | |
| TAGCCGTGTACTGCAAACAT+AGG | + | 10953:2288-2307 | MS.gene21614:intron | 45.0% | |
| TGAAGGAATGCCCTTCATGT+AGG | + | 10953:3818-3837 | MS.gene21614:CDS | 45.0% | |
| TTTGGGCAAGTTTATCCCAC+GGG | + | 10953:1248-1267 | MS.gene21614:CDS | 45.0% | |
| ! | AGTGACTGTTGGAGCTTTGT+TGG | + | 10953:2657-2676 | MS.gene21614:intron | 45.0% |
| ! | GTCGTTGGCTGAAAAGTCAA+TGG | + | 10953:1599-1618 | MS.gene21614:CDS | 45.0% |
| ! | TAAGGGGTTTTTGTTCGAGC+CGG | + | 10953:2726-2745 | MS.gene21614:intron | 45.0% |
| ! | TGAAGCACTCATGAAAGCTG+AGG | + | 10953:3483-3502 | MS.gene21614:CDS | 45.0% |
| ! | TGAGAAGAGGATCTCTGAAG+TGG | + | 10953:1470-1489 | MS.gene21614:CDS | 45.0% |
| ! | TTGAACCTTTTGAGCGGAAG+AGG | - | 10953:1196-1215 | MS.gene21614:intergenic | 45.0% |
| ! | TTTTGAGCGGAAGAGGAGAA+TGG | - | 10953:1189-1208 | MS.gene21614:intergenic | 45.0% |
| !! | ACTGTTGGAGCTTTGTTGGT+TGG | + | 10953:2661-2680 | MS.gene21614:intron | 45.0% |
| !! | TTGTTGGTTGGTAGTCCAGT+GGG | + | 10953:2673-2692 | MS.gene21614:intron | 45.0% |
| !! | TTTGTTGGTTGGTAGTCCAG+TGG | + | 10953:2672-2691 | MS.gene21614:intron | 45.0% |
| !! | TTTTGTTTCGGTGTGGTGCT+GGG | + | 10953:2554-2573 | MS.gene21614:intron | 45.0% |
| !!! | AGAGCAGTTTTGTTTCGGTG+TGG | + | 10953:2547-2566 | MS.gene21614:intron | 45.0% |
| !!! | GAAGTCGCCGTGTCTTTTTT+AGG | - | 10953:1950-1969 | MS.gene21614:intergenic | 45.0% |
| ACAACATTTGGGTGTGCTCG+AGG | + | 10953:272-291 | MS.gene21614:CDS | 50.0% | |
| ACAAGCCCAGTCGTGGAAAA+CGG | + | 10953:1665-1684 | MS.gene21614:CDS | 50.0% | |
| AGCACTCATGAAAGCTGAGG+AGG | + | 10953:3486-3505 | MS.gene21614:CDS | 50.0% | |
| AGCTGGTGGAAGATTGAAGC+GGG | + | 10953:3687-3706 | MS.gene21614:CDS | 50.0% | |
| AGGGTCTCCTTCTGTGTACA+AGG | - | 10953:445-464 | MS.gene21614:intergenic | 50.0% | |
| AGGTGCAAAGCTGGAATGAC+TGG | + | 10953:1328-1347 | MS.gene21614:CDS | 50.0% | |
| CACAAAACCTGATGCGCACA+TGG | - | 10953:3763-3782 | MS.gene21614:intergenic | 50.0% | |
| CAGCTGGTGGAAGATTGAAG+CGG | + | 10953:3686-3705 | MS.gene21614:CDS | 50.0% | |
| CCATGAGAAGCAAGGGATGA+AGG | + | 10953:3801-3820 | MS.gene21614:CDS | 50.0% | |
| CCTAAAGCTTGTGGCAAAGC+GGG | + | 10953:910-929 | MS.gene21614:CDS | 50.0% | |
| CCTTCATCCCTTGCTTCTCA+TGG | - | 10953:3804-3823 | MS.gene21614:intergenic | 50.0% | |
| CTATTCAACAAGCCCAGTCG+TGG | + | 10953:1658-1677 | MS.gene21614:CDS | 50.0% | |
| CTTATTAGTGCGCCTTGCAC+GGG | + | 10953:2799-2818 | MS.gene21614:intron | 50.0% | |
| GATTCAGCTTTACCCGAAGG+AGG | + | 10953:1087-1106 | MS.gene21614:CDS | 50.0% | |
| GCAAGGCGCACTAATAAGCT+TGG | - | 10953:2797-2816 | MS.gene21614:intergenic | 50.0% | |
| GCAGGAATATGTGGACAGCA+TGG | + | 10953:3540-3559 | MS.gene21614:CDS | 50.0% | |
| GCTCGAGGTTGAAGATTGGA+AGG | + | 10953:287-306 | MS.gene21614:CDS | 50.0% | |
| GCTTATTAGTGCGCCTTGCA+CGG | + | 10953:2798-2817 | MS.gene21614:intron | 50.0% | |
| GGAAGTCCCTTGTACACAGA+AGG | + | 10953:435-454 | MS.gene21614:CDS | 50.0% | |
| GGGTCTCCTTCTGTGTACAA+GGG | - | 10953:444-463 | MS.gene21614:intergenic | 50.0% | |
| GGTGCAAAGCTGGAATGACT+GGG | + | 10953:1329-1348 | MS.gene21614:CDS | 50.0% | |
| GTGTGCTCGAGGTTGAAGAT+TGG | + | 10953:283-302 | MS.gene21614:CDS | 50.0% | |
| GTGTGTCATGTGCCTATCAG+AGG | + | 10953:3717-3736 | MS.gene21614:CDS | 50.0% | |
| GTTTATCCCACGGGATGAGA+AGG | + | 10953:1257-1276 | MS.gene21614:CDS | 50.0% | |
| TAAGCTTCGCAAGCTTCAGG+CGG | + | 10953:1380-1399 | MS.gene21614:CDS | 50.0% | |
| TAGGTGCCTATGCATGTCCA+GGG | - | 10953:1931-1950 | MS.gene21614:intergenic | 50.0% | |
| TCACCAGAAGGTCAACTGAG+TGG | + | 10953:673-692 | MS.gene21614:CDS | 50.0% | |
| TCATGTGCCTATCAGAGGAG+AGG | + | 10953:3722-3741 | MS.gene21614:CDS | 50.0% | |
| TCCTATGGCAACTCAGCTTG+AGG | + | 10953:311-330 | MS.gene21614:CDS | 50.0% | |
| TCCTCAAGCTGAGTTGCCAT+AGG | - | 10953:315-334 | MS.gene21614:intergenic | 50.0% | |
| TGAAGCAATGTGGGAGTTGC+TGG | + | 10953:621-640 | MS.gene21614:CDS | 50.0% | |
| TGGCTGAAATGGCCGTTTCA+AGG | + | 10953:414-433 | MS.gene21614:CDS | 50.0% | |
| TTAACCAACAAGCCCGTGCA+AGG | - | 10953:2814-2833 | MS.gene21614:intergenic | 50.0% | |
| TTAGGTGCCTATGCATGTCC+AGG | - | 10953:1932-1951 | MS.gene21614:intergenic | 50.0% | |
| ! | AAATCTGAGACGGTGACGAC+GGG | + | 10953:3646-3665 | MS.gene21614:CDS | 50.0% |
| ! | CAACTCCGTTTTCCACGACT+GGG | - | 10953:1673-1692 | MS.gene21614:intergenic | 50.0% |
| ! | CGATGGTGGTCCTACATGAA+GGG | - | 10953:3831-3850 | MS.gene21614:intergenic | 50.0% |
| ! | GAAATCTGAGACGGTGACGA+CGG | + | 10953:3645-3664 | MS.gene21614:CDS | 50.0% |
| ! | GTTGGTGTCTGCTAAGTCGT+TGG | + | 10953:1584-1603 | MS.gene21614:CDS | 50.0% |
| ! | TCGATGGTGGTCCTACATGA+AGG | - | 10953:3832-3851 | MS.gene21614:intergenic | 50.0% |
| ! | TTTTCTGCCATGTGCGCATC+AGG | + | 10953:3753-3772 | MS.gene21614:CDS | 50.0% |
| ! | TTTTGCAGCGCTACCTCCTT+CGG | - | 10953:1103-1122 | MS.gene21614:intergenic | 50.0% |
| !! | CTCTGAAGTGGAGAATGCCA+TGG | + | 10953:1482-1501 | MS.gene21614:CDS | 50.0% |
| !! | TAGAGATGCTCGGTGTACTC+CGG | + | 10953:572-591 | MS.gene21614:CDS | 50.0% |
| !! | TCCACCAGCTGGTTTGTCTT+GGG | - | 10953:3677-3696 | MS.gene21614:intergenic | 50.0% |
| !! | TTCCACCAGCTGGTTTGTCT+TGG | - | 10953:3678-3697 | MS.gene21614:intergenic | 50.0% |
| !!! | GTTTTGTTTCGGTGTGGTGC+TGG | + | 10953:2553-2572 | MS.gene21614:intron | 50.0% |
| !!! | TGCTGTTTTCTGGTCTGCTG+CGG | + | 10953:2597-2616 | MS.gene21614:intron | 50.0% |
| AGGTGCCTATGCATGTCCAG+GGG | - | 10953:1930-1949 | MS.gene21614:intergenic | 55.0% | |
| CAACCGACCTCTCCTCTGAT+AGG | - | 10953:3732-3751 | MS.gene21614:intergenic | 55.0% | |
| CCACCACTCAGTTGACCTTC+TGG | - | 10953:679-698 | MS.gene21614:intergenic | 55.0% | |
| CCAGAAGGTCAACTGAGTGG+TGG | + | 10953:676-695 | MS.gene21614:CDS | 55.0% | |
| CCAGTCGTGGAAAACGGAGT+TGG | + | 10953:1671-1690 | MS.gene21614:CDS | 55.0% | |
| CCCGCTTTGCCACAAGCTTT+AGG | - | 10953:913-932 | MS.gene21614:intergenic | 55.0% | |
| CGCTTCAATCTTCCACCAGC+TGG | - | 10953:3688-3707 | MS.gene21614:intergenic | 55.0% | |
| GAAGGCAGCTAGTCAACTGC+AGG | + | 10953:3522-3541 | MS.gene21614:CDS | 55.0% | |
| GCGGAAGAGGAGAATGGCTT+AGG | - | 10953:1183-1202 | MS.gene21614:intergenic | 55.0% | |
| GGAGGATGCCGTCAGAAAGA+AGG | + | 10953:3504-3523 | MS.gene21614:CDS | 55.0% | |
| GGCGCACTAATAAGCTTGGG+TGG | - | 10953:2793-2812 | MS.gene21614:intergenic | 55.0% | |
| GTGCCTATCAGAGGAGAGGT+CGG | + | 10953:3726-3745 | MS.gene21614:CDS | 55.0% | |
| GTTCGTCCTTCTCATCCCGT+GGG | - | 10953:1266-1285 | MS.gene21614:intergenic | 55.0% | |
| TCCCAAGACAAACCAGCTGG+TGG | + | 10953:3673-3692 | MS.gene21614:CDS | 55.0% | |
| TGCAGGATGAGGTGCAAAGC+TGG | + | 10953:1319-1338 | MS.gene21614:CDS | 55.0% | |
| TGTTCGTCCTTCTCATCCCG+TGG | - | 10953:1267-1286 | MS.gene21614:intergenic | 55.0% | |
| TTTGCAGCGCTACCTCCTTC+GGG | - | 10953:1102-1121 | MS.gene21614:intergenic | 55.0% | |
| ! | AATCTGAGACGGTGACGACG+GGG | + | 10953:3647-3666 | MS.gene21614:CDS | 55.0% |
| ! | CCAACTCCGTTTTCCACGAC+TGG | - | 10953:1674-1693 | MS.gene21614:intergenic | 55.0% |
| !! | AGAGATGCTCGGTGTACTCC+GGG | + | 10953:573-592 | MS.gene21614:CDS | 55.0% |
| !! | GTGTGGTGCTGGGCCTTTTT+CGG | + | 10953:2564-2583 | MS.gene21614:intron | 55.0% |
| GGCTCCCAAGACAAACCAGC+TGG | + | 10953:3670-3689 | MS.gene21614:CDS | 60.0% | |
| TCGTGCCCCTGGACATGCAT+AGG | + | 10953:1922-1941 | MS.gene21614:intron | 60.0% | |
| ! | ATCGGTTGCCGCAAAAGCGC+CGG | - | 10953:2748-2767 | MS.gene21614:intergenic | 60.0% |
| ! | ATCTGAGACGGTGACGACGG+GGG | + | 10953:3648-3667 | MS.gene21614:CDS | 60.0% |
| ! | TGTTCGAGCCGGCGCTTTTG+CGG | + | 10953:2737-2756 | MS.gene21614:intron | 60.0% |
| TGCGCCTTGCACGGGCTTGT+TGG | + | 10953:2807-2826 | MS.gene21614:intron | 65.0% | |
| ! | TCTGAGACGGTGACGACGGG+GGG | + | 10953:3649-3668 | MS.gene21614:CDS | 65.0% |
| ! | GACGGTCTGACTCGTGCCCC+TGG | + | 10953:1911-1930 | MS.gene21614:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 10953 | gene | 268 | 3888 | 268 | ID=MS.gene21614 |
| 10953 | mRNA | 268 | 3888 | 268 | ID=MS.gene21614.t1;Parent=MS.gene21614 |
| 10953 | exon | 268 | 365 | 268 | ID=MS.gene21614.t1.exon1;Parent=MS.gene21614.t1 |
| 10953 | CDS | 268 | 365 | 268 | ID=cds.MS.gene21614.t1;Parent=MS.gene21614.t1 |
| 10953 | exon | 396 | 532 | 396 | ID=MS.gene21614.t1.exon2;Parent=MS.gene21614.t1 |
| 10953 | CDS | 396 | 532 | 396 | ID=cds.MS.gene21614.t1;Parent=MS.gene21614.t1 |
| 10953 | exon | 567 | 1788 | 567 | ID=MS.gene21614.t1.exon3;Parent=MS.gene21614.t1 |
| 10953 | CDS | 567 | 1788 | 567 | ID=cds.MS.gene21614.t1;Parent=MS.gene21614.t1 |
| 10953 | exon | 3403 | 3888 | 3403 | ID=MS.gene21614.t1.exon4;Parent=MS.gene21614.t1 |
| 10953 | CDS | 3403 | 3888 | 3403 | ID=cds.MS.gene21614.t1;Parent=MS.gene21614.t1 |
| Gene Sequence |
| Protein sequence |
