Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056601.t1 | XP_003606815.2 | 100 | 69 | 0 | 0 | 1 | 69 | 1 | 69 | 1.10E-29 | 138.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056601.t1 | O22860 | 92.8 | 69 | 5 | 0 | 1 | 69 | 1 | 69 | 5.3e-30 | 131.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056601.t1 | G7JEV4 | 100.0 | 69 | 0 | 0 | 1 | 69 | 1 | 69 | 7.6e-30 | 138.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene056601 | 0.802973 | 4.35E-49 | -1.69E-46 |
| MS.gene049341 | MS.gene056601 | 0.809484 | 1.85E-50 | -1.69E-46 |
| MS.gene050277 | MS.gene056601 | 0.878331 | 3.06E-69 | -1.69E-46 |
| MS.gene050290 | MS.gene056601 | 0.801497 | 8.76E-49 | -1.69E-46 |
| MS.gene051063 | MS.gene056601 | 0.817068 | 3.99E-52 | -1.69E-46 |
| MS.gene051330 | MS.gene056601 | 0.822072 | 2.88E-53 | -1.69E-46 |
| MS.gene05134 | MS.gene056601 | 0.817114 | 3.90E-52 | -1.69E-46 |
| MS.gene051633 | MS.gene056601 | 0.81173 | 6.05E-51 | -1.69E-46 |
| MS.gene051746 | MS.gene056601 | 0.825075 | 5.71E-54 | -1.69E-46 |
| MS.gene051748 | MS.gene056601 | 0.811191 | 7.92E-51 | -1.69E-46 |
| MS.gene051903 | MS.gene056601 | 0.850911 | 1.25E-60 | -1.69E-46 |
| MS.gene052286 | MS.gene056601 | 0.823555 | 1.30E-53 | -1.69E-46 |
| MS.gene052947 | MS.gene056601 | 0.837577 | 4.79E-57 | -1.69E-46 |
| MS.gene054937 | MS.gene056601 | 0.80731 | 5.38E-50 | -1.69E-46 |
| MS.gene055162 | MS.gene056601 | 0.84855 | 5.71E-60 | -1.69E-46 |
| MS.gene056601 | MS.gene056631 | 0.85789 | 1.20E-62 | -1.69E-46 |
| MS.gene056601 | MS.gene057057 | 0.813211 | 2.87E-51 | -1.69E-46 |
| MS.gene056601 | MS.gene057234 | 0.836674 | 8.15E-57 | -1.69E-46 |
| MS.gene056601 | MS.gene058055 | 0.803456 | 3.46E-49 | -1.69E-46 |
| MS.gene056601 | MS.gene058238 | 0.817007 | 4.12E-52 | -1.69E-46 |
| MS.gene056601 | MS.gene058906 | 0.834051 | 3.75E-56 | -1.69E-46 |
| MS.gene056601 | MS.gene059898 | 0.830753 | 2.46E-55 | -1.69E-46 |
| MS.gene056601 | MS.gene06001 | 0.858646 | 7.14E-63 | -1.69E-46 |
| MS.gene056601 | MS.gene060917 | 0.810387 | 1.18E-50 | -1.69E-46 |
| MS.gene056601 | MS.gene06172 | 0.853763 | 1.93E-61 | -1.69E-46 |
| MS.gene056601 | MS.gene064071 | 0.860786 | 1.62E-63 | -1.69E-46 |
| MS.gene056601 | MS.gene064072 | 0.860684 | 1.74E-63 | -1.69E-46 |
| MS.gene056601 | MS.gene06667 | 0.846974 | 1.55E-59 | -1.69E-46 |
| MS.gene056601 | MS.gene066953 | 0.801012 | 1.10E-48 | -1.69E-46 |
| MS.gene056601 | MS.gene067521 | 0.815737 | 7.93E-52 | -1.69E-46 |
| MS.gene056601 | MS.gene067746 | 0.807224 | 5.61E-50 | -1.69E-46 |
| MS.gene056601 | MS.gene06837 | 0.809935 | 1.48E-50 | -1.69E-46 |
| MS.gene056601 | MS.gene06883 | 0.812395 | 4.33E-51 | -1.69E-46 |
| MS.gene056601 | MS.gene069310 | 0.863318 | 2.71E-64 | -1.69E-46 |
| MS.gene056601 | MS.gene06989 | 0.859239 | 4.74E-63 | -1.69E-46 |
| MS.gene056601 | MS.gene069962 | 0.840679 | 7.52E-58 | -1.69E-46 |
| MS.gene056601 | MS.gene070222 | 0.821331 | 4.27E-53 | -1.69E-46 |
| MS.gene056601 | MS.gene07090 | 0.804405 | 2.19E-49 | -1.69E-46 |
| MS.gene056601 | MS.gene07100 | 0.803509 | 3.37E-49 | -1.69E-46 |
| MS.gene056601 | MS.gene072057 | 0.807685 | 4.48E-50 | -1.69E-46 |
| MS.gene056601 | MS.gene07217 | 0.854249 | 1.40E-61 | -1.69E-46 |
| MS.gene056601 | MS.gene07222 | 0.859582 | 3.74E-63 | -1.69E-46 |
| MS.gene056601 | MS.gene072386 | 0.808617 | 2.84E-50 | -1.69E-46 |
| MS.gene056601 | MS.gene073332 | 0.810737 | 9.93E-51 | -1.69E-46 |
| MS.gene056601 | MS.gene073785 | 0.818693 | 1.72E-52 | -1.69E-46 |
| MS.gene056601 | MS.gene074465 | 0.812777 | 3.57E-51 | -1.69E-46 |
| MS.gene056601 | MS.gene074594 | 0.827475 | 1.53E-54 | -1.69E-46 |
| MS.gene056601 | MS.gene07552 | 0.851353 | 9.38E-61 | -1.69E-46 |
| MS.gene056601 | MS.gene08428 | 0.83158 | 1.54E-55 | -1.69E-46 |
| MS.gene056601 | MS.gene09032 | 0.848991 | 4.31E-60 | -1.69E-46 |
| MS.gene056601 | MS.gene09212 | 0.80173 | 7.84E-49 | -1.69E-46 |
| MS.gene056601 | MS.gene20280 | 0.818874 | 1.56E-52 | -1.69E-46 |
| MS.gene056601 | MS.gene20302 | 0.809636 | 1.72E-50 | -1.69E-46 |
| MS.gene056601 | MS.gene20740 | 0.857421 | 1.65E-62 | -1.69E-46 |
| MS.gene056601 | MS.gene21614 | 0.82385 | 1.11E-53 | -1.69E-46 |
| MS.gene056601 | MS.gene22968 | 0.861173 | 1.24E-63 | -1.69E-46 |
| MS.gene056601 | MS.gene23058 | 0.883949 | 2.91E-71 | -1.69E-46 |
| MS.gene056601 | MS.gene23059 | 0.883717 | 3.54E-71 | -1.69E-46 |
| MS.gene056601 | MS.gene23954 | 0.831949 | 1.25E-55 | -1.69E-46 |
| MS.gene056601 | MS.gene23983 | 0.840284 | 9.54E-58 | -1.69E-46 |
| MS.gene056601 | MS.gene24539 | 0.80469 | 1.91E-49 | -1.69E-46 |
| MS.gene056601 | MS.gene24706 | 0.807986 | 3.87E-50 | -1.69E-46 |
| MS.gene056601 | MS.gene24930 | 0.829839 | 4.11E-55 | -1.69E-46 |
| MS.gene056601 | MS.gene27991 | 0.825767 | 3.92E-54 | -1.69E-46 |
| MS.gene056601 | MS.gene31196 | 0.816662 | 4.93E-52 | -1.69E-46 |
| MS.gene056601 | MS.gene31405 | 0.819288 | 1.26E-52 | -1.69E-46 |
| MS.gene056601 | MS.gene35214 | 0.869506 | 2.94E-66 | -1.69E-46 |
| MS.gene056601 | MS.gene36468 | 0.805266 | 1.45E-49 | -1.69E-46 |
| MS.gene056601 | MS.gene38255 | 0.821813 | 3.31E-53 | -1.69E-46 |
| MS.gene056601 | MS.gene40648 | 0.849668 | 2.79E-60 | -1.69E-46 |
| MS.gene056601 | MS.gene41455 | 0.82465 | 7.20E-54 | -1.69E-46 |
| MS.gene056601 | MS.gene43537 | 0.810327 | 1.22E-50 | -1.69E-46 |
| MS.gene056601 | MS.gene43602 | 0.804141 | 2.49E-49 | -1.69E-46 |
| MS.gene056601 | MS.gene43992 | 0.809744 | 1.63E-50 | -1.69E-46 |
| MS.gene056601 | MS.gene44141 | 0.836678 | 8.13E-57 | -1.69E-46 |
| MS.gene056601 | MS.gene46281 | -0.823783 | 1.15E-53 | -1.69E-46 |
| MS.gene056601 | MS.gene47819 | 0.803318 | 3.69E-49 | -1.69E-46 |
| MS.gene056601 | MS.gene47955 | 0.824959 | 6.08E-54 | -1.69E-46 |
| MS.gene056601 | MS.gene54282 | 0.829552 | 4.83E-55 | -1.69E-46 |
| MS.gene056601 | MS.gene55732 | 0.852934 | 3.33E-61 | -1.69E-46 |
| MS.gene056601 | MS.gene55887 | 0.850109 | 2.10E-60 | -1.69E-46 |
| MS.gene056601 | MS.gene55988 | 0.818842 | 1.59E-52 | -1.69E-46 |
| MS.gene056601 | MS.gene57210 | 0.831423 | 1.68E-55 | -1.69E-46 |
| MS.gene056601 | MS.gene58693 | 0.824967 | 6.06E-54 | -1.69E-46 |
| MS.gene056601 | MS.gene60261 | 0.827295 | 1.69E-54 | -1.69E-46 |
| MS.gene056601 | MS.gene60717 | 0.847188 | 1.35E-59 | -1.69E-46 |
| MS.gene056601 | MS.gene61543 | 0.830109 | 3.53E-55 | -1.69E-46 |
| MS.gene056601 | MS.gene61679 | 0.81295 | 3.28E-51 | -1.69E-46 |
| MS.gene056601 | MS.gene65076 | 0.813659 | 2.29E-51 | -1.69E-46 |
| MS.gene056601 | MS.gene66089 | 0.835092 | 2.05E-56 | -1.69E-46 |
| MS.gene056601 | MS.gene67884 | 0.824108 | 9.65E-54 | -1.69E-46 |
| MS.gene056601 | MS.gene68810 | 0.86017 | 2.49E-63 | -1.69E-46 |
| MS.gene056601 | MS.gene69947 | 0.813294 | 2.75E-51 | -1.69E-46 |
| MS.gene056601 | MS.gene71949 | 0.815785 | 7.74E-52 | -1.69E-46 |
| MS.gene056601 | MS.gene72904 | 0.808256 | 3.39E-50 | -1.69E-46 |
| MS.gene056601 | MS.gene74854 | 0.843716 | 1.18E-58 | -1.69E-46 |
| MS.gene056601 | MS.gene75923 | 0.805943 | 1.05E-49 | -1.69E-46 |
| MS.gene056601 | MS.gene76576 | 0.845417 | 4.11E-59 | -1.69E-46 |
| MS.gene056601 | MS.gene77282 | 0.803072 | 4.15E-49 | -1.69E-46 |
| MS.gene056601 | MS.gene81361 | 0.810679 | 1.02E-50 | -1.69E-46 |
| MS.gene056601 | MS.gene82827 | 0.827869 | 1.23E-54 | -1.69E-46 |
| MS.gene056601 | MS.gene83217 | 0.808533 | 2.96E-50 | -1.69E-46 |
| MS.gene056601 | MS.gene84455 | 0.830173 | 3.41E-55 | -1.69E-46 |
| MS.gene056601 | MS.gene85108 | 0.838061 | 3.60E-57 | -1.69E-46 |
| MS.gene056601 | MS.gene85110 | 0.817569 | 3.08E-52 | -1.69E-46 |
| MS.gene056601 | MS.gene86265 | 0.837552 | 4.86E-57 | -1.69E-46 |
| MS.gene056601 | MS.gene86350 | 0.84792 | 8.52E-60 | -1.69E-46 |
| MS.gene056601 | MS.gene86392 | 0.828864 | 7.09E-55 | -1.69E-46 |
| MS.gene056601 | MS.gene87285 | 0.800032 | 1.74E-48 | -1.69E-46 |
| MS.gene056601 | MS.gene88229 | 0.804826 | 1.79E-49 | -1.69E-46 |
| MS.gene056601 | MS.gene88371 | 0.843333 | 1.49E-58 | -1.69E-46 |
| MS.gene056601 | MS.gene89027 | 0.830224 | 3.31E-55 | -1.69E-46 |
| MS.gene056601 | MS.gene89562 | 0.835099 | 2.04E-56 | -1.69E-46 |
| MS.gene056601 | MS.gene89721 | 0.8458 | 3.24E-59 | -1.69E-46 |
| MS.gene056601 | MS.gene90981 | 0.835906 | 1.28E-56 | -1.69E-46 |
| MS.gene056601 | MS.gene92572 | 0.835006 | 2.16E-56 | -1.69E-46 |
| MS.gene056601 | MS.gene96322 | 0.811032 | 8.57E-51 | -1.69E-46 |
| MS.gene056601 | MS.gene99313 | 0.810266 | 1.26E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050761 | MS.gene056601 | PPI |
| MS.gene045180 | MS.gene056601 | PPI |
| MS.gene85342 | MS.gene056601 | PPI |
| MS.gene28172 | MS.gene056601 | PPI |
| MS.gene070139 | MS.gene056601 | PPI |
| MS.gene037902 | MS.gene056601 | PPI |
| MS.gene43350 | MS.gene056601 | PPI |
| MS.gene072563 | MS.gene056601 | PPI |
| MS.gene75537 | MS.gene056601 | PPI |
| MS.gene056601 | MS.gene70292 | PPI |
| MS.gene050964 | MS.gene056601 | PPI |
| MS.gene030697 | MS.gene056601 | PPI |
| MS.gene41329 | MS.gene056601 | PPI |
| MS.gene062116 | MS.gene056601 | PPI |
| MS.gene056601 | MS.gene025347 | PPI |
| MS.gene056601 | MS.gene067072 | PPI |
| MS.gene58148 | MS.gene056601 | PPI |
| MS.gene054381 | MS.gene056601 | PPI |
| MS.gene058018 | MS.gene056601 | PPI |
| MS.gene003435 | MS.gene056601 | PPI |
| MS.gene53720 | MS.gene056601 | PPI |
| MS.gene52150 | MS.gene056601 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056601.t1 | MTR_4g068040 | 100.000 | 69 | 0 | 0 | 1 | 69 | 1 | 69 | 3.43e-45 | 139 |
| MS.gene056601.t1 | MTR_2g018680 | 94.203 | 69 | 4 | 0 | 1 | 69 | 1 | 69 | 3.96e-42 | 131 |
| MS.gene056601.t1 | MTR_8g079485 | 94.203 | 69 | 4 | 0 | 1 | 69 | 1 | 69 | 4.72e-42 | 131 |
| MS.gene056601.t1 | MTR_4g068040 | 100.000 | 63 | 0 | 0 | 1 | 63 | 1 | 63 | 1.25e-40 | 127 |
| MS.gene056601.t1 | MTR_2g018680 | 95.312 | 64 | 3 | 0 | 1 | 64 | 1 | 64 | 5.36e-39 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056601.t1 | AT3G59540 | 92.754 | 69 | 5 | 0 | 1 | 69 | 1 | 69 | 2.24e-42 | 132 |
| MS.gene056601.t1 | AT2G43460 | 92.754 | 69 | 5 | 0 | 1 | 69 | 1 | 69 | 2.24e-42 | 132 |
Find 11 sgRNAs with CRISPR-Local
Find 65 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGCAAATCAATGAGATTA+AGG | 0.290766 | 4.3:+36811688 | MS.gene056601:CDS |
| CTTCAACTTATCAGCTTTCT+CGG | 0.350966 | 4.3:-36811831 | None:intergenic |
| TTTGCTTCTCTTGATCTTCA+CGG | 0.377542 | 4.3:-36811747 | None:intergenic |
| CAAAGATGTTGTCAAGTTCA+AGG | 0.412153 | 4.3:+36811766 | MS.gene056601:CDS |
| ACAAAGTGTGTACAAGTACT+TGG | 0.506752 | 4.3:-36811798 | None:intergenic |
| TTAATCTCATTGATTTGCTT+AGG | 0.531275 | 4.3:-36811686 | None:intergenic |
| AGGACTTCCTCCTCACTGCT+AGG | 0.557805 | 4.3:+36811708 | MS.gene056601:CDS |
| CCTCCTCACTGCTAGGAGGA+AGG | 0.566472 | 4.3:+36811715 | MS.gene056601:CDS |
| CCTTCCTCCTAGCAGTGAGG+AGG | 0.657731 | 4.3:-36811715 | None:intergenic |
| ACTTCCTCCTCACTGCTAGG+AGG | 0.666318 | 4.3:+36811711 | MS.gene056601:CDS |
| CATCCTTCCTCCTAGCAGTG+AGG | 0.669946 | 4.3:-36811718 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTATATTTTTTTTTATT+TGG | + | chr4.3:36811587-36811606 | MS.gene056601:intron | 0.0% |
| !!! | TATTTTTTTTTATTTGGATT+TGG | + | chr4.3:36811593-36811612 | MS.gene056601:intron | 10.0% |
| !! | TCTATAAAGTAAATAATAAG+AGG | + | chr4.3:36812043-36812062 | MS.gene056601:intron | 15.0% |
| !!! | GTGTAATAATTCTTTAAAAA+TGG | + | chr4.3:36812018-36812037 | MS.gene056601:intron | 15.0% |
| !! | AAAACATTGAAAATCAAGAT+AGG | - | chr4.3:36811427-36811446 | None:intergenic | 20.0% |
| !! | AAAGAATTATTACACCTTTA+AGG | - | chr4.3:36812013-36812032 | None:intergenic | 20.0% |
| !! | ACATTTCAATAAACACAAAA+AGG | - | chr4.3:36811664-36811683 | None:intergenic | 20.0% |
| !! | ATTATACATTGATCTGAATT+AGG | + | chr4.3:36811490-36811509 | MS.gene056601:intron | 20.0% |
| !! | TCAGATTTATGAATATGAAA+TGG | - | chr4.3:36812211-36812230 | None:intergenic | 20.0% |
| !! | TGAGATTTATGAATAAGAAA+TGG | - | chr4.3:36812116-36812135 | None:intergenic | 20.0% |
| !! | TTATACATTGATCTGAATTA+GGG | + | chr4.3:36811491-36811510 | MS.gene056601:intron | 20.0% |
| !!! | CTTGATTTTCAATGTTTTTA+GGG | + | chr4.3:36811429-36811448 | MS.gene056601:intron | 20.0% |
| !!! | TAGTTGATAAAGTTGATAAA+GGG | + | chr4.3:36811543-36811562 | MS.gene056601:intron | 20.0% |
| !!! | TAGTTTTTGAGAATTATTGT+TGG | + | chr4.3:36811872-36811891 | MS.gene056601:intron | 20.0% |
| !!! | TCTTGATTTTCAATGTTTTT+AGG | + | chr4.3:36811428-36811447 | MS.gene056601:intron | 20.0% |
| !!! | TTTTTATTTGGATTTGGATT+TGG | + | chr4.3:36811599-36811618 | MS.gene056601:intron | 20.0% |
| ! | AACAAGTGAAATTGAATCAA+TGG | + | chr4.3:36811459-36811478 | MS.gene056601:intron | 25.0% |
| ! | ATAATAAGAGGATTGTGTAA+TGG | + | chr4.3:36812055-36812074 | MS.gene056601:intron | 25.0% |
| ! | ATAATTCTCAAAAACTAACC+TGG | - | chr4.3:36811869-36811888 | None:intergenic | 25.0% |
| ! | CAACAGAAATAAACAATCTA+TGG | - | chr4.3:36811973-36811992 | None:intergenic | 25.0% |
| ! | TAAGCAAATCAATGAGATTA+AGG | + | chr4.3:36811688-36811707 | MS.gene056601:CDS | 25.0% |
| ! | TAATTCTCAAAAACTAACCT+GGG | - | chr4.3:36811868-36811887 | None:intergenic | 25.0% |
| ! | TTATGAATATGAAATGGAAG+AGG | - | chr4.3:36812205-36812224 | None:intergenic | 25.0% |
| !! | AGATGTAGAAATTTGAGTTT+AGG | + | chr4.3:36812285-36812304 | MS.gene056601:intron | 25.0% |
| !! | TTATTGTTGGTTGTATGTTA+TGG | + | chr4.3:36811885-36811904 | MS.gene056601:intron | 25.0% |
| !!! | CAATTCACAGTTTTTTTTGT+AGG | + | chr4.3:36811377-36811396 | MS.gene056601:intron | 25.0% |
| !!! | CAGTTTTTTTTGTAGGAAAT+TGG | + | chr4.3:36811384-36811403 | MS.gene056601:intron | 25.0% |
| !!! | CATAGATTGTTTATTTCTGT+TGG | + | chr4.3:36811971-36811990 | MS.gene056601:intron | 25.0% |
| !!! | GTAGTTGATAAAGTTGATAA+AGG | + | chr4.3:36811542-36811561 | MS.gene056601:intron | 25.0% |
| !!! | TGGTTTTTGATTTTCAAACT+TGG | + | chr4.3:36811520-36811539 | MS.gene056601:intron | 25.0% |
| !!! | TGTTATTTTTCTCTCATTCT+AGG | + | chr4.3:36812239-36812258 | MS.gene056601:intron | 25.0% |
| !!! | TTAATCTCATTGATTTGCTT+AGG | - | chr4.3:36811689-36811708 | None:intergenic | 25.0% |
| !!! | TTATTTCTGTTGGTTGTTAT+TGG | + | chr4.3:36811981-36812000 | MS.gene056601:intron | 25.0% |
| AATTCTCAAAAACTAACCTG+GGG | - | chr4.3:36811867-36811886 | None:intergenic | 30.0% | |
| AGTGAAACATGAATGTAAGT+AGG | - | chr4.3:36812315-36812334 | None:intergenic | 30.0% | |
| ATATTCTCCCCATATCTATT+TGG | - | chr4.3:36812081-36812100 | None:intergenic | 30.0% | |
| GATCTGAATTAGGGAATTTA+TGG | + | chr4.3:36811500-36811519 | MS.gene056601:intron | 30.0% | |
| TCATATTCATAAATCTGAGC+TGG | + | chr4.3:36812213-36812232 | MS.gene056601:intron | 30.0% | |
| TGTAATGGCCAAATAGATAT+GGG | + | chr4.3:36812070-36812089 | MS.gene056601:intron | 30.0% | |
| TTATGAATAAGAAATGGCAG+AGG | - | chr4.3:36812110-36812129 | None:intergenic | 30.0% | |
| TTGGGAACAACTTATGATAT+GGG | + | chr4.3:36812165-36812184 | MS.gene056601:intron | 30.0% | |
| ACAAAGTGTGTACAAGTACT+TGG | - | chr4.3:36811801-36811820 | None:intergenic | 35.0% | |
| ATTCTCAAAAACTAACCTGG+GGG | - | chr4.3:36811866-36811885 | None:intergenic | 35.0% | |
| CAAAGATGTTGTCAAGTTCA+AGG | + | chr4.3:36811766-36811785 | MS.gene056601:CDS | 35.0% | |
| CTGTGTTGTGATTTGAAAGA+TGG | + | chr4.3:36811626-36811645 | MS.gene056601:intron | 35.0% | |
| CTTCAACTTATCAGCTTTCT+CGG | - | chr4.3:36811834-36811853 | None:intergenic | 35.0% | |
| GAAACACTGCAAAGAATCAA+TGG | - | chr4.3:36811344-36811363 | None:intergenic | 35.0% | |
| GTAATGGCCAAATAGATATG+GGG | + | chr4.3:36812071-36812090 | MS.gene056601:intron | 35.0% | |
| GTGTAATGGCCAAATAGATA+TGG | + | chr4.3:36812069-36812088 | MS.gene056601:intron | 35.0% | |
| GTTGGGAACAACTTATGATA+TGG | + | chr4.3:36812164-36812183 | MS.gene056601:intron | 35.0% | |
| TGGGAACAACTTATGATATG+GGG | + | chr4.3:36812166-36812185 | MS.gene056601:intron | 35.0% | |
| TTTGCTTCTCTTGATCTTCA+CGG | - | chr4.3:36811750-36811769 | None:intergenic | 35.0% | |
| ! | TTCTGTTGGTTGTTATTGGT+CGG | + | chr4.3:36811985-36812004 | MS.gene056601:intron | 35.0% |
| !! | CATTCATGTTTCACTTTTGC+AGG | + | chr4.3:36812320-36812339 | MS.gene056601:intron | 35.0% |
| !!! | GCTATTTTTCTCTCTCAGTT+GGG | + | chr4.3:36812147-36812166 | MS.gene056601:intron | 35.0% |
| !!! | TGCTATTTTTCTCTCTCAGT+TGG | + | chr4.3:36812146-36812165 | MS.gene056601:intron | 35.0% |
| AGTACTTTCAACTCTAGGTG+AGG | + | chr4.3:36811935-36811954 | MS.gene056601:intron | 40.0% | |
| GTGCAAGTACTTTCAACTCT+AGG | + | chr4.3:36811930-36811949 | MS.gene056601:intron | 40.0% | |
| GTTATTGGTCGGAACCTTAA+AGG | + | chr4.3:36811996-36812015 | MS.gene056601:intron | 40.0% | |
| TTGAAGCAATCACTTCCCCC+AGG | + | chr4.3:36811848-36811867 | MS.gene056601:CDS | 50.0% | |
| ACTTCCTCCTCACTGCTAGG+AGG | + | chr4.3:36811711-36811730 | MS.gene056601:CDS | 55.0% | |
| AGGACTTCCTCCTCACTGCT+AGG | + | chr4.3:36811708-36811727 | MS.gene056601:CDS | 55.0% | |
| CATCCTTCCTCCTAGCAGTG+AGG | - | chr4.3:36811721-36811740 | None:intergenic | 55.0% | |
| CCTCCTCACTGCTAGGAGGA+AGG | + | chr4.3:36811715-36811734 | MS.gene056601:CDS | 60.0% | |
| CCTTCCTCCTAGCAGTGAGG+AGG | - | chr4.3:36811718-36811737 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 36811322 | 36812364 | 36811322 | ID=MS.gene056601 |
| chr4.3 | mRNA | 36811322 | 36812364 | 36811322 | ID=MS.gene056601.t1;Parent=MS.gene056601 |
| chr4.3 | exon | 36811322 | 36811324 | 36811322 | ID=MS.gene056601.t1.exon1;Parent=MS.gene056601.t1 |
| chr4.3 | CDS | 36811322 | 36811324 | 36811322 | ID=cds.MS.gene056601.t1;Parent=MS.gene056601.t1 |
| chr4.3 | exon | 36811686 | 36811869 | 36811686 | ID=MS.gene056601.t1.exon2;Parent=MS.gene056601.t1 |
| chr4.3 | CDS | 36811686 | 36811869 | 36811686 | ID=cds.MS.gene056601.t1;Parent=MS.gene056601.t1 |
| chr4.3 | exon | 36812342 | 36812364 | 36812342 | ID=MS.gene056601.t1.exon3;Parent=MS.gene056601.t1 |
| chr4.3 | CDS | 36812342 | 36812364 | 36812342 | ID=cds.MS.gene056601.t1;Parent=MS.gene056601.t1 |
| Gene Sequence |
| Protein sequence |
