Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21776.t1 | XP_003610822.1 | 99.2 | 257 | 2 | 0 | 1 | 257 | 1 | 257 | 6.50E-141 | 510 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21776.t1 | Q9M8T9 | 60.2 | 221 | 87 | 1 | 12 | 232 | 25 | 244 | 1.4e-72 | 274.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21776.t1 | B7FKF5 | 99.2 | 257 | 2 | 0 | 1 | 257 | 1 | 257 | 4.7e-141 | 510.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene21776.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04920 | MS.gene21776 | 0.809337 | 1.99E-50 | -1.69E-46 |
| MS.gene049283 | MS.gene21776 | 0.81494 | 1.19E-51 | -1.69E-46 |
| MS.gene049499 | MS.gene21776 | 0.812874 | 3.40E-51 | -1.69E-46 |
| MS.gene049680 | MS.gene21776 | 0.840812 | 6.94E-58 | -1.69E-46 |
| MS.gene05029 | MS.gene21776 | 0.818895 | 1.54E-52 | -1.69E-46 |
| MS.gene051597 | MS.gene21776 | 0.807122 | 5.90E-50 | -1.69E-46 |
| MS.gene051699 | MS.gene21776 | 0.815957 | 7.08E-52 | -1.69E-46 |
| MS.gene053963 | MS.gene21776 | 0.850718 | 1.42E-60 | -1.69E-46 |
| MS.gene054222 | MS.gene21776 | 0.808333 | 3.26E-50 | -1.69E-46 |
| MS.gene054957 | MS.gene21776 | 0.832335 | 1.00E-55 | -1.69E-46 |
| MS.gene055150 | MS.gene21776 | 0.833647 | 4.73E-56 | -1.69E-46 |
| MS.gene056699 | MS.gene21776 | 0.802418 | 5.66E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene21776 | 0.823109 | 1.65E-53 | -1.69E-46 |
| MS.gene057102 | MS.gene21776 | 0.84031 | 9.39E-58 | -1.69E-46 |
| MS.gene058592 | MS.gene21776 | 0.822201 | 2.69E-53 | -1.69E-46 |
| MS.gene059051 | MS.gene21776 | 0.813721 | 2.22E-51 | -1.69E-46 |
| MS.gene05952 | MS.gene21776 | 0.845012 | 5.30E-59 | -1.69E-46 |
| MS.gene05985 | MS.gene21776 | -0.836374 | 9.72E-57 | -1.69E-46 |
| MS.gene059901 | MS.gene21776 | -0.800039 | 1.74E-48 | -1.69E-46 |
| MS.gene060338 | MS.gene21776 | 0.808408 | 3.14E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene21776 | 0.824845 | 6.47E-54 | -1.69E-46 |
| MS.gene060937 | MS.gene21776 | 0.834511 | 2.87E-56 | -1.69E-46 |
| MS.gene061243 | MS.gene21776 | 0.800287 | 1.55E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21776.t1 | MTR_5g007400 | 99.222 | 257 | 2 | 0 | 1 | 257 | 1 | 257 | 0.0 | 524 |
| MS.gene21776.t1 | MTR_5g098790 | 28.289 | 152 | 86 | 3 | 17 | 168 | 14 | 142 | 1.23e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21776.t1 | AT5G16800 | 59.459 | 259 | 101 | 2 | 1 | 257 | 14 | 270 | 6.98e-107 | 310 |
| MS.gene21776.t1 | AT5G16800 | 56.870 | 262 | 106 | 3 | 1 | 257 | 14 | 273 | 1.54e-97 | 286 |
| MS.gene21776.t1 | AT5G16800 | 61.062 | 226 | 82 | 1 | 1 | 226 | 14 | 233 | 6.27e-96 | 281 |
| MS.gene21776.t1 | AT3G02980 | 60.181 | 221 | 87 | 1 | 12 | 232 | 25 | 244 | 7.31e-95 | 279 |
| MS.gene21776.t1 | AT3G02980 | 55.333 | 150 | 66 | 1 | 83 | 232 | 26 | 174 | 2.28e-56 | 178 |
| MS.gene21776.t1 | AT5G11340 | 27.607 | 163 | 94 | 4 | 17 | 179 | 14 | 152 | 2.94e-14 | 68.9 |
Find 55 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTGACTAGACCCTTTC+GGG | 0.206622 | 5.2:+1722126 | None:intergenic |
| TTATTCGTGCACTACGTAAA+TGG | 0.221441 | 5.2:-1720126 | MS.gene21776:CDS |
| CTACGTGAAGAGTGGCTTTA+AGG | 0.221630 | 5.2:-1719591 | MS.gene21776:CDS |
| GGCCAAAGTGATGAACTTAT+TGG | 0.280025 | 5.2:-1721861 | MS.gene21776:CDS |
| GGGAGTAGTGGAAGCATATA+GGG | 0.323949 | 5.2:-1720424 | MS.gene21776:CDS |
| TTTGATTGACTAGACCCTTT+CGG | 0.334623 | 5.2:+1722125 | None:intergenic |
| CACTAAAGTCTGGTCAGATT+TGG | 0.334799 | 5.2:+1720461 | None:intergenic |
| TATTCGTGCACTACGTAAAT+GGG | 0.359781 | 5.2:-1720125 | MS.gene21776:CDS |
| TGGGAGTAGTGGAAGCATAT+AGG | 0.379806 | 5.2:-1720425 | MS.gene21776:CDS |
| GCATATAGGGGCCTTGGAAT+AGG | 0.403458 | 5.2:-1720411 | MS.gene21776:intron |
| CACCAGCTTCTTCTTTGATA+CGG | 0.412039 | 5.2:-1720314 | MS.gene21776:intron |
| TCAAAATCAGACGGTCGTAT+AGG | 0.418162 | 5.2:+1722089 | None:intergenic |
| ATGGTAGATTATTTCCCATC+AGG | 0.419207 | 5.2:-1722049 | MS.gene21776:intron |
| GTGGAAGCATATAGGGGCCT+TGG | 0.421160 | 5.2:-1720417 | MS.gene21776:CDS |
| AGTTCATCACTTTGGCCATT+CGG | 0.428159 | 5.2:+1721867 | None:intergenic |
| ACCAGCTTCTTCTTTGATAC+GGG | 0.449831 | 5.2:-1720313 | MS.gene21776:intron |
| CAAGTGTGTTAGAAAGCTGC+AGG | 0.455738 | 5.2:-1720187 | MS.gene21776:CDS |
| ATCCAATAAGTTCATCACTT+TGG | 0.471996 | 5.2:+1721859 | None:intergenic |
| AGCTGTGCAAGAACGAAGTT+AGG | 0.483514 | 5.2:-1719556 | MS.gene21776:CDS |
| TGCACTTACAATGGCGAGCA+AGG | 0.487162 | 5.2:+1720093 | None:intergenic |
| AACTTCGTTCTTGCACAGCT+TGG | 0.497962 | 5.2:+1719559 | None:intergenic |
| TTGTAGATAGTGGATTTGCT+TGG | 0.513932 | 5.2:-1720495 | MS.gene21776:intron |
| CGAAGATGTGGTGAACAGAC+GGG | 0.516575 | 5.2:-1721925 | MS.gene21776:CDS |
| TTTAGTGTATGTTCTAACAC+TGG | 0.518861 | 5.2:-1720445 | MS.gene21776:CDS |
| TTAGAACATACACTAAAGTC+TGG | 0.520023 | 5.2:+1720451 | None:intergenic |
| TTGAGAGTGAGACAAGAGAA+TGG | 0.529226 | 5.2:+1719501 | None:intergenic |
| GATCAATGGTAAACCCGAAA+GGG | 0.533764 | 5.2:-1722139 | None:intergenic |
| TCGAAGATGTGGTGAACAGA+CGG | 0.541792 | 5.2:-1721926 | MS.gene21776:CDS |
| CAGACGGGATATTGTGTCGT+GGG | 0.543303 | 5.2:-1721910 | MS.gene21776:CDS |
| TGTTCTAACACTGGGAGTAG+TGG | 0.563129 | 5.2:-1720436 | MS.gene21776:CDS |
| TGTTCTTGCAAAAGAAAGTG+AGG | 0.573579 | 5.2:-1721820 | MS.gene21776:intron |
| GAAGAGTGGCTTTAAGGCAG+TGG | 0.581385 | 5.2:-1719585 | MS.gene21776:CDS |
| AACATGGCAGTCGAGTCTAC+TGG | 0.586352 | 5.2:-1719461 | MS.gene21776:CDS |
| CGATCAATGGTAAACCCGAA+AGG | 0.590054 | 5.2:-1722140 | None:intergenic |
| AGCTTCTTCTTTGATACGGG+AGG | 0.591740 | 5.2:-1720310 | MS.gene21776:CDS |
| ACAAACTGCTACCTATTCCA+AGG | 0.593056 | 5.2:+1720400 | None:intergenic |
| TTAGTGTATGTTCTAACACT+GGG | 0.599355 | 5.2:-1720444 | MS.gene21776:CDS |
| TTTGTAAGCTACGTGAAGAG+TGG | 0.599551 | 5.2:-1719599 | MS.gene21776:CDS |
| ACACGATGATCTCACCTGAT+GGG | 0.613102 | 5.2:+1722035 | None:intergenic |
| ATTCGTGCACTACGTAAATG+GGG | 0.616046 | 5.2:-1720124 | MS.gene21776:CDS |
| GTTGATCTTAGTCGACCGAA+TGG | 0.627310 | 5.2:-1721882 | MS.gene21776:CDS |
| ACGAAGTTAGGAAGATCTCA+AGG | 0.631340 | 5.2:-1719544 | MS.gene21776:CDS |
| AGTTAGGAAGATCTCAAGGT+GGG | 0.635024 | 5.2:-1719540 | MS.gene21776:CDS |
| GGAGTAGTGGAAGCATATAG+GGG | 0.641948 | 5.2:-1720423 | MS.gene21776:CDS |
| AAGTGTGTTAGAAAGCTGCA+GGG | 0.647080 | 5.2:-1720186 | MS.gene21776:CDS |
| TTCGTGCACTACGTAAATGG+GGG | 0.654674 | 5.2:-1720123 | MS.gene21776:CDS |
| ACAGACGGGATATTGTGTCG+TGG | 0.662598 | 5.2:-1721911 | MS.gene21776:CDS |
| TCACGTGCAAGTAAACCGCT+CGG | 0.669384 | 5.2:+1720256 | None:intergenic |
| AAGCATTCCAACGTGCCGAG+CGG | 0.675262 | 5.2:-1720271 | MS.gene21776:CDS |
| AGACGGGATATTGTGTCGTG+GGG | 0.679193 | 5.2:-1721909 | MS.gene21776:CDS |
| AATACCCAACAAAAGAAACA+TGG | 0.688655 | 5.2:-1719477 | MS.gene21776:CDS |
| TCTAAAACGTCAAAATCAGA+CGG | 0.689832 | 5.2:+1722080 | None:intergenic |
| AAGTAAACCGCTCGGCACGT+TGG | 0.692398 | 5.2:+1720264 | None:intergenic |
| AAGTTAGGAAGATCTCAAGG+TGG | 0.739682 | 5.2:-1719541 | MS.gene21776:CDS |
| TTATTGGATTTGTAACAGCG+CGG | 0.789219 | 5.2:-1721845 | MS.gene21776:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTATTTATTTTAATATTCT+TGG | - | chr5.2:1720245-1720264 | MS.gene21776:CDS | 10.0% |
| !! | ATATTGAAGTCTAATAATTT+CGG | + | chr5.2:1721843-1721862 | None:intergenic | 15.0% |
| !! | ATTAAAATAAATACTCCAAA+TGG | + | chr5.2:1720240-1720259 | None:intergenic | 15.0% |
| !! | TTAAAATAAATACTCCAAAT+GGG | + | chr5.2:1720239-1720258 | None:intergenic | 15.0% |
| !!! | ATTTACTTGTTTTCTATAAA+GGG | - | chr5.2:1719915-1719934 | MS.gene21776:intron | 15.0% |
| !!! | ATTTATTTTAATATTCTTGG+AGG | - | chr5.2:1720248-1720267 | MS.gene21776:CDS | 15.0% |
| !!! | TTCCTTTTATCTATAAAAAA+CGG | - | chr5.2:1721901-1721920 | MS.gene21776:CDS | 15.0% |
| !! | AATAAACAATTATCAGCAAA+AGG | + | chr5.2:1721046-1721065 | None:intergenic | 20.0% |
| !! | AATATTATTCTTGTAGATAG+TGG | - | chr5.2:1721074-1721093 | MS.gene21776:intron | 20.0% |
| !! | ACTACAATATATATTCCTAA+TGG | + | chr5.2:1720365-1720384 | None:intergenic | 20.0% |
| !! | ATAAAAATGAATCATAGTGT+TGG | + | chr5.2:1721437-1721456 | None:intergenic | 20.0% |
| !! | ATGCATACAGTTATATATAA+AGG | + | chr5.2:1719792-1719811 | None:intergenic | 20.0% |
| !! | ATGGAAAATAAAATTCTCTA+AGG | + | chr5.2:1721932-1721951 | None:intergenic | 20.0% |
| !! | ATTAGGAATATATATTGTAG+TGG | - | chr5.2:1720364-1720383 | MS.gene21776:intron | 20.0% |
| !! | TATAACACCAATTGATAAAT+TGG | + | chr5.2:1720904-1720923 | None:intergenic | 20.0% |
| !! | TGCATACAGTTATATATAAA+GGG | + | chr5.2:1719791-1719810 | None:intergenic | 20.0% |
| !! | TTATTCACCAATTTATCAAT+TGG | - | chr5.2:1720894-1720913 | MS.gene21776:intron | 20.0% |
| !! | TTGAAATATTACATCAAACA+TGG | + | chr5.2:1720105-1720124 | None:intergenic | 20.0% |
| !!! | AAAAAAAAAAGAGTATTGTC+TGG | + | chr5.2:1720778-1720797 | None:intergenic | 20.0% |
| !!! | CATTTTGATTATAACTTCTA+TGG | - | chr5.2:1720405-1720424 | MS.gene21776:intron | 20.0% |
| !!! | CTACAGCATATATTTTTAAT+AGG | + | chr5.2:1720458-1720477 | None:intergenic | 20.0% |
| !!! | GATTTACTTGTTTTCTATAA+AGG | - | chr5.2:1719914-1719933 | MS.gene21776:intron | 20.0% |
| !!! | TAAAGAATACAAAACCTTTT+TGG | + | chr5.2:1721692-1721711 | None:intergenic | 20.0% |
| !!! | TTCCGTTTTTTATAGATAAA+AGG | + | chr5.2:1721906-1721925 | None:intergenic | 20.0% |
| !!! | TTTACTTGTTTTCTATAAAG+GGG | - | chr5.2:1719916-1719935 | MS.gene21776:intron | 20.0% |
| !!! | TTTTCATAACAAGTTGTATT+GGG | - | chr5.2:1720687-1720706 | MS.gene21776:intron | 20.0% |
| !!! | TTTTTCATAACAAGTTGTAT+TGG | - | chr5.2:1720686-1720705 | MS.gene21776:intron | 20.0% |
| ! | GCATACAGTTATATATAAAG+GGG | + | chr5.2:1719790-1719809 | None:intergenic | 25.0% |
| ! | GTCAATCAAAAATATGCTAT+CGG | - | chr5.2:1719467-1719486 | MS.gene21776:CDS | 25.0% |
| ! | GTTAAACTAAGAATTACAGA+GGG | + | chr5.2:1721024-1721043 | None:intergenic | 25.0% |
| ! | TAGATTACCAATCATATTAC+TGG | + | chr5.2:1721232-1721251 | None:intergenic | 25.0% |
| ! | TCAAAACGATTATTTGACAT+TGG | - | chr5.2:1721781-1721800 | MS.gene21776:intron | 25.0% |
| ! | TCAATATTGATGTATACTTG+TGG | - | chr5.2:1721856-1721875 | MS.gene21776:CDS | 25.0% |
| ! | TTAAGATGTTTATGAATCTC+AGG | - | chr5.2:1719614-1719633 | MS.gene21776:CDS | 25.0% |
| ! | TTTATGAGTAGTTATCCATT+AGG | - | chr5.2:1720347-1720366 | MS.gene21776:intron | 25.0% |
| !! | AACACATTTTCAACAAGAAT+CGG | + | chr5.2:1719954-1719973 | None:intergenic | 25.0% |
| !! | ACATAACACATACTTTGTTT+GGG | + | chr5.2:1719993-1720012 | None:intergenic | 25.0% |
| !! | AGATTGATAGACTCAAATTT+TGG | + | chr5.2:1720066-1720085 | None:intergenic | 25.0% |
| !!! | TGAGTATTTTGATTTGTGTT+TGG | - | chr5.2:1719590-1719609 | MS.gene21776:CDS | 25.0% |
| AAATAAATACTCCAAATGGG+AGG | + | chr5.2:1720236-1720255 | None:intergenic | 30.0% | |
| AACTTACAATTCACACAAAC+TGG | + | chr5.2:1720752-1720771 | None:intergenic | 30.0% | |
| AACTTCTATGGTGACAATTA+TGG | - | chr5.2:1720417-1720436 | MS.gene21776:CDS | 30.0% | |
| AATACCCAACAAAAGAAACA+TGG | - | chr5.2:1722102-1722121 | MS.gene21776:CDS | 30.0% | |
| ACTTCTATGGTGACAATTAT+GGG | - | chr5.2:1720418-1720437 | MS.gene21776:CDS | 30.0% | |
| AGATAAAAGGAACCACAAAA+AGG | + | chr5.2:1721893-1721912 | None:intergenic | 30.0% | |
| ATCCAATAAGTTCATCACTT+TGG | + | chr5.2:1719723-1719742 | None:intergenic | 30.0% | |
| ATCGGATGAGATAGTTTAAT+CGG | + | chr5.2:1720993-1721012 | None:intergenic | 30.0% | |
| ATGTGTTATGTCTATGTTCA+AGG | - | chr5.2:1720002-1720021 | MS.gene21776:intron | 30.0% | |
| ATTACCAATCATATTACTGG+AGG | + | chr5.2:1721229-1721248 | None:intergenic | 30.0% | |
| ATTGTGTGATTCAATTGCAT+TGG | - | chr5.2:1720715-1720734 | MS.gene21776:intron | 30.0% | |
| CAAGCAATACAACTAAGAAA+AGG | + | chr5.2:1720852-1720871 | None:intergenic | 30.0% | |
| CTGTGTTTATGTTGTAAGTT+TGG | - | chr5.2:1720618-1720637 | MS.gene21776:intron | 30.0% | |
| GAAAGATATTGCACTTACAA+TGG | + | chr5.2:1721498-1721517 | None:intergenic | 30.0% | |
| GACATAACACATACTTTGTT+TGG | + | chr5.2:1719994-1720013 | None:intergenic | 30.0% | |
| GGTTAAACTAAGAATTACAG+AGG | + | chr5.2:1721025-1721044 | None:intergenic | 30.0% | |
| GTAATGAAGTTGAACCAAAA+AGG | - | chr5.2:1721675-1721694 | MS.gene21776:intron | 30.0% | |
| GTTTGTGTGAATTGTAAGTT+TGG | - | chr5.2:1720752-1720771 | MS.gene21776:intron | 30.0% | |
| TAAGCTAATGGAACATTATC+AGG | + | chr5.2:1720200-1720219 | None:intergenic | 30.0% | |
| TGTAGTATTACTCCTTAACT+GGG | - | chr5.2:1721620-1721639 | MS.gene21776:intron | 30.0% | |
| TTACCAATCATATTACTGGA+GGG | + | chr5.2:1721228-1721247 | None:intergenic | 30.0% | |
| TTAGAACATACACTAAAGTC+TGG | + | chr5.2:1721131-1721150 | None:intergenic | 30.0% | |
| TTAGTGTATGTTCTAACACT+GGG | - | chr5.2:1721135-1721154 | MS.gene21776:intron | 30.0% | |
| TTGAGTAAGTCATTACCTAA+TGG | + | chr5.2:1720954-1720973 | None:intergenic | 30.0% | |
| TTGGTTCAACTTCATTACTT+TGG | + | chr5.2:1721673-1721692 | None:intergenic | 30.0% | |
| TTGTAGTATTACTCCTTAAC+TGG | - | chr5.2:1721619-1721638 | MS.gene21776:intron | 30.0% | |
| TTTAGTGTATGTTCTAACAC+TGG | - | chr5.2:1721134-1721153 | MS.gene21776:intron | 30.0% | |
| ! | AAGCTGTCTGAAATATGAAA+TGG | + | chr5.2:1721951-1721970 | None:intergenic | 30.0% |
| ! | TCTAAAACGTCAAAATCAGA+CGG | + | chr5.2:1719502-1719521 | None:intergenic | 30.0% |
| !! | ACAACTTGTTATGAAAAACC+AGG | + | chr5.2:1720684-1720703 | None:intergenic | 30.0% |
| !! | AGACTCAAATTTTGGTATCA+AGG | + | chr5.2:1720058-1720077 | None:intergenic | 30.0% |
| !! | GATCCTTTTATTAGTCTGAT+GGG | - | chr5.2:1720156-1720175 | MS.gene21776:CDS | 30.0% |
| !! | TGATCCTTTTATTAGTCTGA+TGG | - | chr5.2:1720155-1720174 | MS.gene21776:CDS | 30.0% |
| !!! | CAGGGCTTTTATTTTATCAA+TGG | - | chr5.2:1721411-1721430 | MS.gene21776:intron | 30.0% |
| !!! | TTAGTTGGGTTTTAAGCTAA+TGG | + | chr5.2:1720212-1720231 | None:intergenic | 30.0% |
| ACTTATGATTCACTTATGCG+TGG | - | chr5.2:1720294-1720313 | MS.gene21776:CDS | 35.0% | |
| ATATCAGAATACTCTCTGGT+AGG | - | chr5.2:1720646-1720665 | MS.gene21776:intron | 35.0% | |
| ATCAGTCAGAATATAACAGC+AGG | + | chr5.2:1721532-1721551 | None:intergenic | 35.0% | |
| ATGGTAGATTATTTCCCATC+AGG | - | chr5.2:1719530-1719549 | MS.gene21776:CDS | 35.0% | |
| CAAAACCTATATCCCAGTTA+AGG | + | chr5.2:1721635-1721654 | None:intergenic | 35.0% | |
| CAGAATATCAGAATACTCTC+TGG | - | chr5.2:1720642-1720661 | MS.gene21776:intron | 35.0% | |
| GAAACTGAAACCTAGTTAGA+CGG | + | chr5.2:1721821-1721840 | None:intergenic | 35.0% | |
| GTTCCCATCAGACTAATAAA+AGG | + | chr5.2:1720162-1720181 | None:intergenic | 35.0% | |
| TAAGTAGACAGAGAATACGT+AGG | - | chr5.2:1720806-1720825 | MS.gene21776:intron | 35.0% | |
| TATTCGTGCACTACGTAAAT+GGG | - | chr5.2:1721454-1721473 | MS.gene21776:intron | 35.0% | |
| TCAGTCAGAATATAACAGCA+GGG | + | chr5.2:1721531-1721550 | None:intergenic | 35.0% | |
| TGAAACCGGGAAGAAAAAAA+AGG | - | chr5.2:1720574-1720593 | MS.gene21776:intron | 35.0% | |
| TGTTCTTGCAAAAGAAAGTG+AGG | - | chr5.2:1719759-1719778 | MS.gene21776:intron | 35.0% | |
| TTAAGCAGACAGTGTAAACT+AGG | + | chr5.2:1720129-1720148 | None:intergenic | 35.0% | |
| TTACTACTCTGTGGAAAGTA+TGG | - | chr5.2:1719874-1719893 | MS.gene21776:intron | 35.0% | |
| TTACTCCTTAACTGGGATAT+AGG | - | chr5.2:1721627-1721646 | MS.gene21776:intron | 35.0% | |
| TTATTCGTGCACTACGTAAA+TGG | - | chr5.2:1721453-1721472 | MS.gene21776:intron | 35.0% | |
| TTATTGGATTTGTAACAGCG+CGG | - | chr5.2:1719734-1719753 | MS.gene21776:intron | 35.0% | |
| TTTGATTGACTAGACCCTTT+CGG | + | chr5.2:1719457-1719476 | None:intergenic | 35.0% | |
| ! | ACTGCCATGTTTCTTTTGTT+GGG | + | chr5.2:1722109-1722128 | None:intergenic | 35.0% |
| ! | CGTAGGAGTAATACGAATTT+TGG | - | chr5.2:1720823-1720842 | MS.gene21776:intron | 35.0% |
| !! | GGTGTTATATCCTAGTCTTT+TGG | - | chr5.2:1720915-1720934 | MS.gene21776:intron | 35.0% |
| !! | TATCAGGTCCATTTAGTTCT+TGG | + | chr5.2:1720184-1720203 | None:intergenic | 35.0% |
| !! | TTGTAGATAGTGGATTTGCT+TGG | - | chr5.2:1721084-1721103 | MS.gene21776:intron | 35.0% |
| !!! | ATCTGCTTTTTTCGAAGATG+TGG | - | chr5.2:1719642-1719661 | MS.gene21776:intron | 35.0% |
| !!! | CACTACCTTTTTTTTCTTCC+CGG | + | chr5.2:1720582-1720601 | None:intergenic | 35.0% |
| AAGCCCTCCAGTAATATGAT+TGG | - | chr5.2:1721222-1721241 | MS.gene21776:intron | 40.0% | |
| AAGTGTGTTAGAAAGCTGCA+GGG | - | chr5.2:1721393-1721412 | MS.gene21776:intron | 40.0% | |
| AAGTTAGGAAGATCTCAAGG+TGG | - | chr5.2:1722038-1722057 | MS.gene21776:intron | 40.0% | |
| ACAAACTGCTACCTATTCCA+AGG | + | chr5.2:1721182-1721201 | None:intergenic | 40.0% | |
| ACCAGCTTCTTCTTTGATAC+GGG | - | chr5.2:1721266-1721285 | MS.gene21776:intron | 40.0% | |
| ACGAAGTTAGGAAGATCTCA+AGG | - | chr5.2:1722035-1722054 | MS.gene21776:intron | 40.0% | |
| ACTATCTCATCCGATAGAGT+AGG | - | chr5.2:1720998-1721017 | MS.gene21776:intron | 40.0% | |
| AGTTAGGAAGATCTCAAGGT+GGG | - | chr5.2:1722039-1722058 | MS.gene21776:intron | 40.0% | |
| AGTTCATCACTTTGGCCATT+CGG | + | chr5.2:1719715-1719734 | None:intergenic | 40.0% | |
| ATACTCAAACTTGAAGCCAG+TGG | + | chr5.2:1719577-1719596 | None:intergenic | 40.0% | |
| ATTCGTGCACTACGTAAATG+GGG | - | chr5.2:1721455-1721474 | MS.gene21776:intron | 40.0% | |
| CACCAGCTTCTTCTTTGATA+CGG | - | chr5.2:1721265-1721284 | MS.gene21776:intron | 40.0% | |
| CACTAAAGTCTGGTCAGATT+TGG | + | chr5.2:1721121-1721140 | None:intergenic | 40.0% | |
| GATGGGAACCAAGAACTAAA+TGG | - | chr5.2:1720173-1720192 | MS.gene21776:CDS | 40.0% | |
| GGCCAAAGTGATGAACTTAT+TGG | - | chr5.2:1719718-1719737 | MS.gene21776:intron | 40.0% | |
| GGTAGTGCTGTGTAAAAAAC+TGG | - | chr5.2:1720595-1720614 | MS.gene21776:intron | 40.0% | |
| GTTCTGTTCTTACTACTCTG+TGG | - | chr5.2:1719865-1719884 | MS.gene21776:intron | 40.0% | |
| GTTTACACTGTCTGCTTAAG+TGG | - | chr5.2:1720130-1720149 | MS.gene21776:CDS | 40.0% | |
| TCAAAATCAGACGGTCGTAT+AGG | + | chr5.2:1719493-1719512 | None:intergenic | 40.0% | |
| TCAAGGCAAGAGAAACTTGA+TGG | - | chr5.2:1720019-1720038 | MS.gene21776:intron | 40.0% | |
| TCCAAATGGGAGGTTTAGTT+GGG | + | chr5.2:1720226-1720245 | None:intergenic | 40.0% | |
| TTGAGAGTGAGACAAGAGAA+TGG | + | chr5.2:1722081-1722100 | None:intergenic | 40.0% | |
| TTGATTGACTAGACCCTTTC+GGG | + | chr5.2:1719456-1719475 | None:intergenic | 40.0% | |
| TTTGTAAGCTACGTGAAGAG+TGG | - | chr5.2:1721980-1721999 | MS.gene21776:intron | 40.0% | |
| ! | ACAGAACACGTTCTGTTTTC+AGG | + | chr5.2:1719852-1719871 | None:intergenic | 40.0% |
| ! | GACTGCCATGTTTCTTTTGT+TGG | + | chr5.2:1722110-1722129 | None:intergenic | 40.0% |
| ! | GTATACGCATAGCCTTTTTG+TGG | - | chr5.2:1721878-1721897 | MS.gene21776:CDS | 40.0% |
| ! | TTCTTGGAGGAGAAAGCATA+TGG | - | chr5.2:1720261-1720280 | MS.gene21776:CDS | 40.0% |
| !!! | GACGTTTTAGAGCGTATTCA+TGG | - | chr5.2:1719511-1719530 | MS.gene21776:CDS | 40.0% |
| AACACGATGATCTCACCTGA+TGG | + | chr5.2:1719548-1719567 | None:intergenic | 45.0% | |
| AACTTCGTTCTTGCACAGCT+TGG | + | chr5.2:1722023-1722042 | None:intergenic | 45.0% | |
| ACACGATGATCTCACCTGAT+GGG | + | chr5.2:1719547-1719566 | None:intergenic | 45.0% | |
| ACCAAGGTTCAAATTCTGGC+TGG | - | chr5.2:1720531-1720550 | MS.gene21776:intron | 45.0% | |
| ACCCAACTAAACCTCCCATT+TGG | - | chr5.2:1720222-1720241 | MS.gene21776:CDS | 45.0% | |
| ACTAATGACGCCGTCTAACT+AGG | - | chr5.2:1721808-1721827 | MS.gene21776:intron | 45.0% | |
| AGCTGTGCAAGAACGAAGTT+AGG | - | chr5.2:1722023-1722042 | MS.gene21776:intron | 45.0% | |
| AGCTTCTTCTTTGATACGGG+AGG | - | chr5.2:1721269-1721288 | MS.gene21776:intron | 45.0% | |
| ATATGCTGTAGAACCAACCG+AGG | - | chr5.2:1720467-1720486 | MS.gene21776:CDS | 45.0% | |
| ATTACCTAATGGTCAGCGCT+TGG | + | chr5.2:1720943-1720962 | None:intergenic | 45.0% | |
| CAAGTGTGTTAGAAAGCTGC+AGG | - | chr5.2:1721392-1721411 | MS.gene21776:intron | 45.0% | |
| CTCCAAATGGGAGGTTTAGT+TGG | + | chr5.2:1720227-1720246 | None:intergenic | 45.0% | |
| GCGAACCAAGGTTCAAATTC+TGG | - | chr5.2:1720527-1720546 | MS.gene21776:intron | 45.0% | |
| GGTAGGAGTCATATAACTCC+TGG | - | chr5.2:1720663-1720682 | MS.gene21776:intron | 45.0% | |
| GTAGTGGTGTCTGAAAGTAG+TGG | - | chr5.2:1720380-1720399 | MS.gene21776:intron | 45.0% | |
| GTTGATCTTAGTCGACCGAA+TGG | - | chr5.2:1719697-1719716 | MS.gene21776:intron | 45.0% | |
| TCCCGGTTTCACACAAAAGT+GGG | + | chr5.2:1720565-1720584 | None:intergenic | 45.0% | |
| TCCCGTATCAAAGAAGAAGC+TGG | + | chr5.2:1721270-1721289 | None:intergenic | 45.0% | |
| TCGAAGATGTGGTGAACAGA+CGG | - | chr5.2:1719653-1719672 | MS.gene21776:intron | 45.0% | |
| TGTTCTAACACTGGGAGTAG+TGG | - | chr5.2:1721143-1721162 | MS.gene21776:intron | 45.0% | |
| TTACAGAGGGCCTACTCTAT+CGG | + | chr5.2:1721011-1721030 | None:intergenic | 45.0% | |
| TTCCCGGTTTCACACAAAAG+TGG | + | chr5.2:1720566-1720585 | None:intergenic | 45.0% | |
| TTCGTGCACTACGTAAATGG+GGG | - | chr5.2:1721456-1721475 | MS.gene21776:intron | 45.0% | |
| ! | AACCTTGGTTCGCTATGTTG+TGG | + | chr5.2:1720520-1720539 | None:intergenic | 45.0% |
| ! | ACCTTGGTTCGCTATGTTGT+GGG | + | chr5.2:1720519-1720538 | None:intergenic | 45.0% |
| ! | CAAAGAAGAAGCTGGTGATG+AGG | + | chr5.2:1721262-1721281 | None:intergenic | 45.0% |
| ! | CCAAGGTTCAAATTCTGGCT+GGG | - | chr5.2:1720532-1720551 | MS.gene21776:intron | 45.0% |
| ! | CTACGTGAAGAGTGGCTTTA+AGG | - | chr5.2:1721988-1722007 | MS.gene21776:intron | 45.0% |
| ! | GGAGTAGTGGAAGCATATAG+GGG | - | chr5.2:1721156-1721175 | MS.gene21776:intron | 45.0% |
| ! | GGGAGTAGTGGAAGCATATA+GGG | - | chr5.2:1721155-1721174 | MS.gene21776:intron | 45.0% |
| ! | TCATCGTGTTGTTGTTCCAC+TGG | - | chr5.2:1719558-1719577 | MS.gene21776:CDS | 45.0% |
| ! | TGGGAGTAGTGGAAGCATAT+AGG | - | chr5.2:1721154-1721173 | MS.gene21776:intron | 45.0% |
| !! | TGCCCACTTTTGTGTGAAAC+CGG | - | chr5.2:1720560-1720579 | MS.gene21776:intron | 45.0% |
| AACATGGCAGTCGAGTCTAC+TGG | - | chr5.2:1722118-1722137 | MS.gene21776:CDS | 50.0% | |
| ACAGACGGGATATTGTGTCG+TGG | - | chr5.2:1719668-1719687 | MS.gene21776:intron | 50.0% | |
| AGACGGGATATTGTGTCGTG+GGG | - | chr5.2:1719670-1719689 | MS.gene21776:intron | 50.0% | |
| CAGACGGGATATTGTGTCGT+GGG | - | chr5.2:1719669-1719688 | MS.gene21776:intron | 50.0% | |
| CCCAGCCAGAATTTGAACCT+TGG | + | chr5.2:1720535-1720554 | None:intergenic | 50.0% | |
| CGAAGATGTGGTGAACAGAC+GGG | - | chr5.2:1719654-1719673 | MS.gene21776:intron | 50.0% | |
| CTGTAGAACCAACCGAGGTT+GGG | - | chr5.2:1720472-1720491 | MS.gene21776:CDS | 50.0% | |
| GCATATAGGGGCCTTGGAAT+AGG | - | chr5.2:1721168-1721187 | MS.gene21776:intron | 50.0% | |
| TCACGTGCAAGTAAACCGCT+CGG | + | chr5.2:1721326-1721345 | None:intergenic | 50.0% | |
| TCCCACAACATAGCGAACCA+AGG | - | chr5.2:1720515-1720534 | MS.gene21776:intron | 50.0% | |
| TGCACTACGTAAATGGGGGA+CGG | - | chr5.2:1721460-1721479 | MS.gene21776:intron | 50.0% | |
| TGCACTTACAATGGCGAGCA+AGG | + | chr5.2:1721489-1721508 | None:intergenic | 50.0% | |
| ! | GTTCAAATTCTGGCTGGGAG+TGG | - | chr5.2:1720537-1720556 | MS.gene21776:intron | 50.0% |
| !! | GAAGAGTGGCTTTAAGGCAG+TGG | - | chr5.2:1721994-1722013 | MS.gene21776:intron | 50.0% |
| !! | GCCCACTTTTGTGTGAAACC+GGG | - | chr5.2:1720561-1720580 | MS.gene21776:intron | 50.0% |
| AAGCATTCCAACGTGCCGAG+CGG | - | chr5.2:1721308-1721327 | MS.gene21776:intron | 55.0% | |
| AAGTAAACCGCTCGGCACGT+TGG | + | chr5.2:1721318-1721337 | None:intergenic | 55.0% | |
| GCGCTTGGCACCAAAAGACT+AGG | + | chr5.2:1720928-1720947 | None:intergenic | 55.0% | |
| GCTGTAGAACCAACCGAGGT+TGG | - | chr5.2:1720471-1720490 | MS.gene21776:CDS | 55.0% | |
| ! | GTGGAAGCATATAGGGGCCT+TGG | - | chr5.2:1721162-1721181 | MS.gene21776:intron | 55.0% |
| CCAACCGAGGTTGGGTCTAG+CGG | - | chr5.2:1720480-1720499 | MS.gene21776:CDS | 60.0% | |
| CGAGGTTGGGTCTAGCGGAA+CGG | - | chr5.2:1720485-1720504 | MS.gene21776:CDS | 60.0% | |
| CGTTCCGCTAGACCCAACCT+CGG | + | chr5.2:1720487-1720506 | None:intergenic | 60.0% | |
| GAGGTTGGGTCTAGCGGAAC+GGG | - | chr5.2:1720486-1720505 | MS.gene21776:CDS | 60.0% | |
| !! | GGTGCCAAGCGCTGACCATT+AGG | - | chr5.2:1720936-1720955 | MS.gene21776:intron | 60.0% |
| CCGCTAGACCCAACCTCGGT+TGG | + | chr5.2:1720483-1720502 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 1719445 | 1722156 | 1719445 | ID=MS.gene21776 |
| chr5.2 | mRNA | 1719445 | 1722156 | 1719445 | ID=MS.gene21776.t1;Parent=MS.gene21776 |
| chr5.2 | exon | 1722050 | 1722156 | 1722050 | ID=MS.gene21776.t1.exon1;Parent=MS.gene21776.t1 |
| chr5.2 | CDS | 1722050 | 1722156 | 1722050 | ID=cds.MS.gene21776.t1;Parent=MS.gene21776.t1 |
| chr5.2 | exon | 1721821 | 1721965 | 1721821 | ID=MS.gene21776.t1.exon2;Parent=MS.gene21776.t1 |
| chr5.2 | CDS | 1721821 | 1721965 | 1721821 | ID=cds.MS.gene21776.t1;Parent=MS.gene21776.t1 |
| chr5.2 | exon | 1720412 | 1720511 | 1720412 | ID=MS.gene21776.t1.exon3;Parent=MS.gene21776.t1 |
| chr5.2 | CDS | 1720412 | 1720511 | 1720412 | ID=cds.MS.gene21776.t1;Parent=MS.gene21776.t1 |
| chr5.2 | exon | 1720102 | 1720330 | 1720102 | ID=MS.gene21776.t1.exon4;Parent=MS.gene21776.t1 |
| chr5.2 | CDS | 1720102 | 1720330 | 1720102 | ID=cds.MS.gene21776.t1;Parent=MS.gene21776.t1 |
| chr5.2 | exon | 1719445 | 1719637 | 1719445 | ID=MS.gene21776.t1.exon5;Parent=MS.gene21776.t1 |
| chr5.2 | CDS | 1719445 | 1719637 | 1719445 | ID=cds.MS.gene21776.t1;Parent=MS.gene21776.t1 |
| Gene Sequence |
| Protein sequence |
