Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23428.t1 | XP_013449946.1 | 84.6 | 364 | 44 | 4 | 1 | 363 | 1 | 353 | 7.10E-101 | 377.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23428.t1 | A0A072U2Q8 | 84.6 | 364 | 44 | 4 | 1 | 363 | 1 | 353 | 5.1e-101 | 377.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene23428 | 0.802533 | 5.36E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene23428 | 0.863326 | 2.70E-64 | -1.69E-46 |
| MS.gene04991 | MS.gene23428 | -0.805162 | 1.52E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene23428 | 0.812765 | 3.60E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene23428 | 0.814713 | 1.34E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene23428 | 0.8191 | 1.39E-52 | -1.69E-46 |
| MS.gene050642 | MS.gene23428 | 0.826981 | 2.01E-54 | -1.69E-46 |
| MS.gene050762 | MS.gene23428 | 0.80228 | 6.05E-49 | -1.69E-46 |
| MS.gene050763 | MS.gene23428 | 0.800847 | 1.19E-48 | -1.69E-46 |
| MS.gene051064 | MS.gene23428 | 0.820581 | 6.36E-53 | -1.69E-46 |
| MS.gene051983 | MS.gene23428 | 0.81462 | 1.40E-51 | -1.69E-46 |
| MS.gene052077 | MS.gene23428 | 0.817478 | 3.23E-52 | -1.69E-46 |
| MS.gene052176 | MS.gene23428 | 0.866539 | 2.65E-65 | -1.69E-46 |
| MS.gene052389 | MS.gene23428 | 0.893533 | 5.75E-75 | -1.69E-46 |
| MS.gene054379 | MS.gene23428 | 0.823433 | 1.39E-53 | -1.69E-46 |
| MS.gene054930 | MS.gene23428 | 0.817304 | 3.53E-52 | -1.69E-46 |
| MS.gene055946 | MS.gene23428 | 0.840986 | 6.25E-58 | -1.69E-46 |
| MS.gene05595 | MS.gene23428 | 0.800602 | 1.33E-48 | -1.69E-46 |
| MS.gene056979 | MS.gene23428 | 0.808396 | 3.16E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23428.t1 | MTR_7g098450 | 90.385 | 364 | 23 | 4 | 1 | 363 | 24 | 376 | 0.0 | 605 |
| MS.gene23428.t1 | MTR_7g098450 | 90.385 | 364 | 23 | 4 | 1 | 363 | 1 | 353 | 0.0 | 603 |
| MS.gene23428.t1 | MTR_7g099260 | 76.330 | 376 | 63 | 11 | 1 | 363 | 1 | 363 | 2.93e-163 | 461 |
| MS.gene23428.t1 | MTR_1g073230 | 51.908 | 131 | 58 | 2 | 209 | 339 | 250 | 375 | 1.03e-39 | 144 |
| MS.gene23428.t1 | MTR_1g073230 | 40.517 | 232 | 97 | 7 | 120 | 344 | 38 | 235 | 1.35e-39 | 144 |
| MS.gene23428.t1 | MTR_4g114690 | 57.547 | 106 | 42 | 1 | 231 | 333 | 153 | 258 | 1.51e-36 | 134 |
| MS.gene23428.t1 | MTR_5g029910 | 52.083 | 96 | 46 | 0 | 240 | 335 | 125 | 220 | 3.38e-32 | 121 |
| MS.gene23428.t1 | MTR_2g103795 | 50.000 | 104 | 52 | 0 | 237 | 340 | 139 | 242 | 4.93e-31 | 119 |
| MS.gene23428.t1 | MTR_4g010250 | 42.857 | 119 | 65 | 1 | 237 | 355 | 124 | 239 | 3.78e-27 | 108 |
| MS.gene23428.t1 | MTR_2g103795 | 47.561 | 82 | 43 | 0 | 240 | 321 | 142 | 223 | 6.04e-21 | 90.5 |
| MS.gene23428.t1 | MTR_3g463450 | 38.776 | 98 | 60 | 0 | 238 | 335 | 400 | 497 | 3.14e-17 | 83.2 |
| MS.gene23428.t1 | MTR_5g082130 | 34.259 | 108 | 71 | 0 | 228 | 335 | 289 | 396 | 2.69e-16 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23428.t1 | AT4G17940 | 53.535 | 99 | 46 | 0 | 237 | 335 | 150 | 248 | 2.45e-34 | 128 |
| MS.gene23428.t1 | AT5G20190 | 55.789 | 95 | 42 | 0 | 240 | 334 | 159 | 253 | 2.13e-33 | 125 |
| MS.gene23428.t1 | AT1G04530 | 57.692 | 104 | 41 | 2 | 232 | 335 | 118 | 218 | 4.99e-31 | 120 |
| MS.gene23428.t1 | AT1G04530 | 33.898 | 118 | 58 | 2 | 240 | 337 | 193 | 310 | 2.94e-14 | 73.2 |
| MS.gene23428.t1 | AT4G32340 | 53.535 | 99 | 45 | 1 | 237 | 334 | 110 | 208 | 3.05e-28 | 110 |
| MS.gene23428.t1 | AT1G80130 | 50.495 | 101 | 50 | 0 | 233 | 333 | 161 | 261 | 1.21e-27 | 110 |
| MS.gene23428.t1 | AT2G29670 | 42.857 | 98 | 56 | 0 | 238 | 335 | 421 | 518 | 6.01e-20 | 91.7 |
| MS.gene23428.t1 | AT2G29670 | 42.857 | 98 | 56 | 0 | 238 | 335 | 421 | 518 | 6.01e-20 | 91.7 |
| MS.gene23428.t1 | AT1G07280 | 40.351 | 114 | 61 | 1 | 237 | 350 | 435 | 541 | 4.76e-19 | 89.0 |
| MS.gene23428.t1 | AT1G07280 | 40.351 | 114 | 61 | 1 | 237 | 350 | 435 | 541 | 4.76e-19 | 89.0 |
| MS.gene23428.t1 | AT1G07280 | 40.351 | 114 | 61 | 1 | 237 | 350 | 435 | 541 | 4.76e-19 | 89.0 |
| MS.gene23428.t1 | AT3G47080 | 41.414 | 99 | 58 | 0 | 237 | 335 | 400 | 498 | 3.39e-16 | 80.1 |
Find 98 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTCTTCAACACCAGTTCT+TGG | 0.272535 | 7.2:+12827700 | MS.gene23428:CDS |
| TTATGCTCAGTTTCTGTATA+AGG | 0.290532 | 7.2:+12828458 | MS.gene23428:CDS |
| AGGATTCAGGATGAAGACTA+TGG | 0.297329 | 7.2:-12827777 | None:intergenic |
| GATTATAGTTCCATGGGTTC+TGG | 0.300216 | 7.2:+12828345 | MS.gene23428:CDS |
| CACAGTATGGGAAGCTGGTT+TGG | 0.310028 | 7.2:+12828788 | MS.gene23428:CDS |
| GTCATTTGGATCTGCTAGTA+TGG | 0.327394 | 7.2:-12828752 | None:intergenic |
| TGAAGAGAGATTCAATTATA+TGG | 0.329630 | 7.2:+12827999 | MS.gene23428:CDS |
| CCGCGTATGCAAGTTTCCTT+TGG | 0.343155 | 7.2:+12829011 | MS.gene23428:CDS |
| GACAGAACTTCTCCGTCATT+TGG | 0.350188 | 7.2:-12828766 | None:intergenic |
| GGAGAAGTTCTGTCACAGTA+TGG | 0.354968 | 7.2:+12828775 | MS.gene23428:CDS |
| GGAAGAATATTACAAGAAAA+TGG | 0.355814 | 7.2:+12828398 | MS.gene23428:CDS |
| GGTTCTCTCCTATCTTCTTC+CGG | 0.364585 | 7.2:+12827721 | MS.gene23428:CDS |
| TTCTCTCTTTCAAAGCAAAC+AGG | 0.386547 | 7.2:+12828084 | MS.gene23428:CDS |
| TTAAGTGCATGAAAGGATTC+AGG | 0.398047 | 7.2:-12827790 | None:intergenic |
| AATGATGGAGATAGTAATCA+TGG | 0.406178 | 7.2:+12828372 | MS.gene23428:CDS |
| CTATGGGAATGATGATGAAT+AGG | 0.407108 | 7.2:-12827760 | None:intergenic |
| CTCAGAAACAATGGGTTCCC+AGG | 0.407926 | 7.2:-12828432 | None:intergenic |
| CGCGTATGCAAGTTTCCTTT+GGG | 0.410780 | 7.2:+12829012 | MS.gene23428:CDS |
| TCAGCAATGGAAGGAGAGAT+TGG | 0.418500 | 7.2:-12827886 | None:intergenic |
| AGTTCAATCTGAAGGGAACT+TGG | 0.434632 | 7.2:+12827942 | MS.gene23428:CDS |
| TTGTATTTGTACCTGTCATC+AGG | 0.438683 | 7.2:-12828871 | None:intergenic |
| TACTGCTCGTTCAAAATAGC+TGG | 0.441969 | 7.2:-12828839 | None:intergenic |
| TTCAGTGAGACAAAGATGTT+TGG | 0.449053 | 7.2:+12828041 | MS.gene23428:CDS |
| TGAAGGAACCGGAAGAAGAT+AGG | 0.454703 | 7.2:-12827729 | None:intergenic |
| ATTGAAATGTATCTTGCAAA+GGG | 0.463349 | 7.2:+12828261 | MS.gene23428:CDS |
| GGTGTTGATGTGAGTGGTGA+TGG | 0.469703 | 7.2:+12828288 | MS.gene23428:CDS |
| AGGACTATCTGTGAAGGAAC+CGG | 0.472882 | 7.2:-12827740 | None:intergenic |
| AATATTCCTCTGCTCCTTCA+CGG | 0.473833 | 7.2:-12828720 | None:intergenic |
| ATATGGACTCTTCTTCTAAG+AGG | 0.475130 | 7.2:+12828016 | MS.gene23428:CDS |
| ACAGTATGGGAAGCTGGTTT+GGG | 0.478494 | 7.2:+12828789 | MS.gene23428:CDS |
| TGCTTTGAAAGAGAGAAAGA+TGG | 0.480264 | 7.2:-12828078 | None:intergenic |
| TGGATCTGCTAGTATGGCTC+TGG | 0.483784 | 7.2:-12828746 | None:intergenic |
| ATGGGTTCTGGAGGGAATGA+TGG | 0.489888 | 7.2:+12828357 | MS.gene23428:CDS |
| AGGTGGTGATTATAGTTCCA+TGG | 0.497150 | 7.2:+12828338 | MS.gene23428:CDS |
| TTTGATGAGGAGGGACAGGT+TGG | 0.498943 | 7.2:+12828234 | MS.gene23428:CDS |
| GGTGGCTGCAGAGGAGGGAA+TGG | 0.499605 | 7.2:+12828315 | MS.gene23428:CDS |
| GATAGGAGAGAACCAAGAAC+TGG | 0.506501 | 7.2:-12827712 | None:intergenic |
| TCTGTCACAGTATGGGAAGC+TGG | 0.506983 | 7.2:+12828783 | MS.gene23428:CDS |
| GATTGTGATGATGATGATGT+TGG | 0.516587 | 7.2:-12827840 | None:intergenic |
| AGTAGTGTGCTGAATAGTAC+TGG | 0.517028 | 7.2:+12828159 | MS.gene23428:CDS |
| GGTGGTGATTATAGTTCCAT+GGG | 0.517897 | 7.2:+12828339 | MS.gene23428:CDS |
| ATTAGAAGAGTTCAATCTGA+AGG | 0.520058 | 7.2:+12827934 | MS.gene23428:CDS |
| TTTGGAGCTATGGCAACTAC+AGG | 0.520195 | 7.2:+12829097 | MS.gene23428:CDS |
| CATAATTCCTCAGAAACAAT+GGG | 0.520475 | 7.2:-12828440 | None:intergenic |
| ATGTATCTTGCAAAGGGACT+TGG | 0.525659 | 7.2:+12828267 | MS.gene23428:CDS |
| TATTGAAATGTATCTTGCAA+AGG | 0.532810 | 7.2:+12828260 | MS.gene23428:CDS |
| TGCAGAGGAGGGAATGGAGG+TGG | 0.534796 | 7.2:+12828321 | MS.gene23428:CDS |
| ATCATTCCCTCCAGAACCCA+TGG | 0.538649 | 7.2:-12828355 | None:intergenic |
| GTTGTTACAACTAGTAGCAT+AGG | 0.539151 | 7.2:-12827974 | None:intergenic |
| GGCTGCAGAGGAGGGAATGG+AGG | 0.542066 | 7.2:+12828318 | MS.gene23428:CDS |
| GGTATAGGTGGCTGCAGAGG+AGG | 0.542557 | 7.2:+12828309 | MS.gene23428:CDS |
| ATGATGGAGATAGTAATCAT+GGG | 0.542937 | 7.2:+12828373 | MS.gene23428:CDS |
| ATCTTGAAAGACAAAACAAA+GGG | 0.547476 | 7.2:+12827908 | MS.gene23428:CDS |
| TCAGAAACAATGGGTTCCCA+GGG | 0.550997 | 7.2:-12828431 | None:intergenic |
| CTGGGAACCCATTGTTTCTG+AGG | 0.551696 | 7.2:+12828433 | MS.gene23428:CDS |
| GCATAATTCCTCAGAAACAA+TGG | 0.561255 | 7.2:-12828441 | None:intergenic |
| AGAAAGATGGAATGGTCTCA+AGG | 0.561384 | 7.2:-12828065 | None:intergenic |
| TGAAAGAGAGAAAGATGGAA+TGG | 0.562440 | 7.2:-12828073 | None:intergenic |
| TATAGTTCCATGGGTTCTGG+AGG | 0.562677 | 7.2:+12828348 | MS.gene23428:CDS |
| GATGTGAGTGGTGATGGTAT+AGG | 0.566548 | 7.2:+12828294 | MS.gene23428:CDS |
| TGGAGCGAAGTGGTTGGTGG+TGG | 0.569007 | 7.2:-12827820 | None:intergenic |
| TTGTCTTTCAAGATCAGCAA+TGG | 0.569009 | 7.2:-12827899 | None:intergenic |
| GAGAAGTTCTGTCACAGTAT+GGG | 0.569625 | 7.2:+12828776 | MS.gene23428:CDS |
| TACAAGCTTCTCCTGATGAC+AGG | 0.573449 | 7.2:+12828860 | MS.gene23428:CDS |
| ACAGAGGAAGACGAGGATGC+AGG | 0.575261 | 7.2:+12829037 | MS.gene23428:CDS |
| CCAAAGGAAACTTGCATACG+CGG | 0.576728 | 7.2:-12829011 | None:intergenic |
| TAGATGCTTAAGTGCATGAA+AGG | 0.576922 | 7.2:-12827797 | None:intergenic |
| CGTCTTCCTCTGTGTCCCAA+AGG | 0.579496 | 7.2:-12829027 | None:intergenic |
| CTTTCAAGATCAGCAATGGA+AGG | 0.579663 | 7.2:-12827895 | None:intergenic |
| GTGAGTGGTGATGGTATAGG+TGG | 0.580814 | 7.2:+12828297 | MS.gene23428:CDS |
| AAAATGGTTCAGCAAAACCC+TGG | 0.581315 | 7.2:+12828414 | MS.gene23428:CDS |
| AATGTTGAGGCAAACATTGT+GGG | 0.586251 | 7.2:-12829069 | None:intergenic |
| TGTTGGAGCGAAGTGGTTGG+TGG | 0.586507 | 7.2:-12827823 | None:intergenic |
| TGGAGATAGTAATCATGGGG+TGG | 0.587358 | 7.2:+12828377 | MS.gene23428:CDS |
| GGATTCAGGATGAAGACTAT+GGG | 0.588650 | 7.2:-12827776 | None:intergenic |
| TTAGAAGAGTTCAATCTGAA+GGG | 0.596938 | 7.2:+12827935 | MS.gene23428:CDS |
| GTATAGGTGGCTGCAGAGGA+GGG | 0.597903 | 7.2:+12828310 | MS.gene23428:CDS |
| GAAAGATGGAATGGTCTCAA+GGG | 0.610385 | 7.2:-12828064 | None:intergenic |
| GCTCCAAAATGAAAATGTTG+AGG | 0.611118 | 7.2:-12829082 | None:intergenic |
| GATCTTGAAAGACAAAACAA+AGG | 0.612241 | 7.2:+12827907 | MS.gene23428:CDS |
| GAATAGTACTGGCAGTGGTG+TGG | 0.617162 | 7.2:+12828170 | MS.gene23428:CDS |
| AAATGGTTCAGCAAAACCCT+GGG | 0.619938 | 7.2:+12828415 | MS.gene23428:CDS |
| ATGAATAGGACTATCTGTGA+AGG | 0.622956 | 7.2:-12827746 | None:intergenic |
| GGTGGTAAATGATGAAGTGA+AGG | 0.634203 | 7.2:+12828191 | MS.gene23428:CDS |
| AAATGTTGAGGCAAACATTG+TGG | 0.636468 | 7.2:-12829070 | None:intergenic |
| ACAAGACCGTGAAGGAGCAG+AGG | 0.636751 | 7.2:+12828714 | MS.gene23428:CDS |
| TGATGGAGATAGTAATCATG+GGG | 0.637625 | 7.2:+12828374 | MS.gene23428:CDS |
| GATGGTATAGGTGGCTGCAG+AGG | 0.639534 | 7.2:+12828306 | MS.gene23428:CDS |
| ATAGTTCCATGGGTTCTGGA+GGG | 0.645436 | 7.2:+12828349 | MS.gene23428:CDS |
| TGATGTTGGAGCGAAGTGGT+TGG | 0.647415 | 7.2:-12827826 | None:intergenic |
| ATACTAGCAGATCCAAATGA+CGG | 0.662236 | 7.2:+12828754 | MS.gene23428:CDS |
| CAGTGCAAACAAGACCGTGA+AGG | 0.662241 | 7.2:+12828706 | MS.gene23428:intron |
| TAGTACTGGCAGTGGTGTGG+TGG | 0.662574 | 7.2:+12828173 | MS.gene23428:CDS |
| GGACTTGGTGTTGATGTGAG+TGG | 0.667908 | 7.2:+12828282 | MS.gene23428:CDS |
| TTGGGACACAGAGGAAGACG+AGG | 0.672619 | 7.2:+12829030 | MS.gene23428:CDS |
| GTGCTGAATAGTACTGGCAG+TGG | 0.681444 | 7.2:+12828165 | MS.gene23428:CDS |
| ATGATGATGTTGGAGCGAAG+TGG | 0.693701 | 7.2:-12827830 | None:intergenic |
| AAGTTTCCTTTGGGACACAG+AGG | 0.726292 | 7.2:+12829021 | MS.gene23428:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAGAATTTTCAACAAGT+TGG | - | chr7.2:12828551-12828570 | None:intergenic | 20.0% |
| ! | ATCTTGAAAGACAAAACAAA+GGG | + | chr7.2:12827908-12827927 | MS.gene23428:CDS | 25.0% |
| ! | ATTAGTGCATACAAAACTAT+TGG | + | chr7.2:12828648-12828667 | MS.gene23428:intron | 25.0% |
| ! | ATTGAAATGTATCTTGCAAA+GGG | + | chr7.2:12828261-12828280 | MS.gene23428:CDS | 25.0% |
| ! | GGAAGAATATTACAAGAAAA+TGG | + | chr7.2:12828398-12828417 | MS.gene23428:CDS | 25.0% |
| ! | TATTGAAATGTATCTTGCAA+AGG | + | chr7.2:12828260-12828279 | MS.gene23428:CDS | 25.0% |
| ! | TGAAGAGAGATTCAATTATA+TGG | + | chr7.2:12827999-12828018 | MS.gene23428:CDS | 25.0% |
| ATTAGAAGAGTTCAATCTGA+AGG | + | chr7.2:12827934-12827953 | MS.gene23428:CDS | 30.0% | |
| CATAATTCCTCAGAAACAAT+GGG | - | chr7.2:12828443-12828462 | None:intergenic | 30.0% | |
| GATCTTGAAAGACAAAACAA+AGG | + | chr7.2:12827907-12827926 | MS.gene23428:CDS | 30.0% | |
| TTAGAAGAGTTCAATCTGAA+GGG | + | chr7.2:12827935-12827954 | MS.gene23428:CDS | 30.0% | |
| TTATGCTCAGTTTCTGTATA+AGG | + | chr7.2:12828458-12828477 | MS.gene23428:CDS | 30.0% | |
| ! | AATGATGGAGATAGTAATCA+TGG | + | chr7.2:12828372-12828391 | MS.gene23428:CDS | 30.0% |
| ! | ATGATGGAGATAGTAATCAT+GGG | + | chr7.2:12828373-12828392 | MS.gene23428:CDS | 30.0% |
| ! | GCACTAATAAAACCAAGTTT+TGG | - | chr7.2:12828636-12828655 | None:intergenic | 30.0% |
| ! | TCATTTTCAACTCCAAAACT+TGG | + | chr7.2:12828621-12828640 | MS.gene23428:intron | 30.0% |
| ! | TTGCCTCAACATTTTCATTT+TGG | + | chr7.2:12829079-12829098 | MS.gene23428:CDS | 30.0% |
| !! | GAAACTGATTTTGAAGATGA+AGG | + | chr7.2:12828120-12828139 | MS.gene23428:CDS | 30.0% |
| !!! | ACATTTTCATTTTGGAGCTA+TGG | + | chr7.2:12829087-12829106 | MS.gene23428:CDS | 30.0% |
| AAATGTTGAGGCAAACATTG+TGG | - | chr7.2:12829073-12829092 | None:intergenic | 35.0% | |
| AATGTTGAGGCAAACATTGT+GGG | - | chr7.2:12829072-12829091 | None:intergenic | 35.0% | |
| ATACTAGCAGATCCAAATGA+CGG | + | chr7.2:12828754-12828773 | MS.gene23428:CDS | 35.0% | |
| ATATGGACTCTTCTTCTAAG+AGG | + | chr7.2:12828016-12828035 | MS.gene23428:CDS | 35.0% | |
| ATGAATAGGACTATCTGTGA+AGG | - | chr7.2:12827749-12827768 | None:intergenic | 35.0% | |
| GAGCTATACATTGAAACAGA+AGG | - | chr7.2:12828496-12828515 | None:intergenic | 35.0% | |
| GCATAATTCCTCAGAAACAA+TGG | - | chr7.2:12828444-12828463 | None:intergenic | 35.0% | |
| GCTCCAAAATGAAAATGTTG+AGG | - | chr7.2:12829085-12829104 | None:intergenic | 35.0% | |
| GTTGTTACAACTAGTAGCAT+AGG | - | chr7.2:12827977-12827996 | None:intergenic | 35.0% | |
| TAGATGCTTAAGTGCATGAA+AGG | - | chr7.2:12827800-12827819 | None:intergenic | 35.0% | |
| TGAAAGAGAGAAAGATGGAA+TGG | - | chr7.2:12828076-12828095 | None:intergenic | 35.0% | |
| TGATGGAGATAGTAATCATG+GGG | + | chr7.2:12828374-12828393 | MS.gene23428:CDS | 35.0% | |
| TTAAGTGCATGAAAGGATTC+AGG | - | chr7.2:12827793-12827812 | None:intergenic | 35.0% | |
| TTCAGTGAGACAAAGATGTT+TGG | + | chr7.2:12828041-12828060 | MS.gene23428:CDS | 35.0% | |
| TTCTCTCTTTCAAAGCAAAC+AGG | + | chr7.2:12828084-12828103 | MS.gene23428:CDS | 35.0% | |
| TTGTATTTGTACCTGTCATC+AGG | - | chr7.2:12828874-12828893 | None:intergenic | 35.0% | |
| TTGTCTTTCAAGATCAGCAA+TGG | - | chr7.2:12827902-12827921 | None:intergenic | 35.0% | |
| ! | AAGTGAAGGATAGAGTTTTC+AGG | + | chr7.2:12828205-12828224 | MS.gene23428:CDS | 35.0% |
| ! | AGTGAAGGATAGAGTTTTCA+GGG | + | chr7.2:12828206-12828225 | MS.gene23428:CDS | 35.0% |
| ! | CTATGGGAATGATGATGAAT+AGG | - | chr7.2:12827763-12827782 | None:intergenic | 35.0% |
| ! | GATTGTGATGATGATGATGT+TGG | - | chr7.2:12827843-12827862 | None:intergenic | 35.0% |
| ! | TTTAGATCGAGTTGCATACT+TGG | + | chr7.2:12828939-12828958 | MS.gene23428:intron | 35.0% |
| !! | TGCTTTGAAAGAGAGAAAGA+TGG | - | chr7.2:12828081-12828100 | None:intergenic | 35.0% |
| AAAATGGTTCAGCAAAACCC+TGG | + | chr7.2:12828414-12828433 | MS.gene23428:CDS | 40.0% | |
| AAATGGTTCAGCAAAACCCT+GGG | + | chr7.2:12828415-12828434 | MS.gene23428:CDS | 40.0% | |
| AATATTCCTCTGCTCCTTCA+CGG | - | chr7.2:12828723-12828742 | None:intergenic | 40.0% | |
| AGAAAGATGGAATGGTCTCA+AGG | - | chr7.2:12828068-12828087 | None:intergenic | 40.0% | |
| AGGATTCAGGATGAAGACTA+TGG | - | chr7.2:12827780-12827799 | None:intergenic | 40.0% | |
| AGGTGGTGATTATAGTTCCA+TGG | + | chr7.2:12828338-12828357 | MS.gene23428:CDS | 40.0% | |
| AGTAGTGTGCTGAATAGTAC+TGG | + | chr7.2:12828159-12828178 | MS.gene23428:CDS | 40.0% | |
| AGTTCAATCTGAAGGGAACT+TGG | + | chr7.2:12827942-12827961 | MS.gene23428:CDS | 40.0% | |
| ATGTATCTTGCAAAGGGACT+TGG | + | chr7.2:12828267-12828286 | MS.gene23428:CDS | 40.0% | |
| CTTTCAAGATCAGCAATGGA+AGG | - | chr7.2:12827898-12827917 | None:intergenic | 40.0% | |
| GAAAGATGGAATGGTCTCAA+GGG | - | chr7.2:12828067-12828086 | None:intergenic | 40.0% | |
| GAGAAGTTCTGTCACAGTAT+GGG | + | chr7.2:12828776-12828795 | MS.gene23428:CDS | 40.0% | |
| GATTATAGTTCCATGGGTTC+TGG | + | chr7.2:12828345-12828364 | MS.gene23428:CDS | 40.0% | |
| GGATTCAGGATGAAGACTAT+GGG | - | chr7.2:12827779-12827798 | None:intergenic | 40.0% | |
| GGTGGTAAATGATGAAGTGA+AGG | + | chr7.2:12828191-12828210 | MS.gene23428:CDS | 40.0% | |
| GGTGGTGATTATAGTTCCAT+GGG | + | chr7.2:12828339-12828358 | MS.gene23428:CDS | 40.0% | |
| GTCATTTGGATCTGCTAGTA+TGG | - | chr7.2:12828755-12828774 | None:intergenic | 40.0% | |
| TACTGCTCGTTCAAAATAGC+TGG | - | chr7.2:12828842-12828861 | None:intergenic | 40.0% | |
| !! | TTTCAGGGTGAGTTTTGATG+AGG | + | chr7.2:12828221-12828240 | MS.gene23428:CDS | 40.0% |
| AGCTCTTCAACACCAGTTCT+TGG | + | chr7.2:12827700-12827719 | MS.gene23428:CDS | 45.0% | |
| AGGACTATCTGTGAAGGAAC+CGG | - | chr7.2:12827743-12827762 | None:intergenic | 45.0% | |
| CCAAAGGAAACTTGCATACG+CGG | - | chr7.2:12829014-12829033 | None:intergenic | 45.0% | |
| CGCGTATGCAAGTTTCCTTT+GGG | + | chr7.2:12829012-12829031 | MS.gene23428:CDS | 45.0% | |
| GACAGAACTTCTCCGTCATT+TGG | - | chr7.2:12828769-12828788 | None:intergenic | 45.0% | |
| GATAGGAGAGAACCAAGAAC+TGG | - | chr7.2:12827715-12827734 | None:intergenic | 45.0% | |
| GGAGAAGTTCTGTCACAGTA+TGG | + | chr7.2:12828775-12828794 | MS.gene23428:CDS | 45.0% | |
| GGTTCTCTCCTATCTTCTTC+CGG | + | chr7.2:12827721-12827740 | MS.gene23428:CDS | 45.0% | |
| TACAAGCTTCTCCTGATGAC+AGG | + | chr7.2:12828860-12828879 | MS.gene23428:CDS | 45.0% | |
| TCAGCAATGGAAGGAGAGAT+TGG | - | chr7.2:12827889-12827908 | None:intergenic | 45.0% | |
| TGAAGGAACCGGAAGAAGAT+AGG | - | chr7.2:12827732-12827751 | None:intergenic | 45.0% | |
| TGGAGATAGTAATCATGGGG+TGG | + | chr7.2:12828377-12828396 | MS.gene23428:CDS | 45.0% | |
| ! | ACAGTATGGGAAGCTGGTTT+GGG | + | chr7.2:12828789-12828808 | MS.gene23428:CDS | 45.0% |
| ! | ATGATGATGTTGGAGCGAAG+TGG | - | chr7.2:12827833-12827852 | None:intergenic | 45.0% |
| ! | TATAGTTCCATGGGTTCTGG+AGG | + | chr7.2:12828348-12828367 | MS.gene23428:CDS | 45.0% |
| ! | TCAGAAACAATGGGTTCCCA+GGG | - | chr7.2:12828434-12828453 | None:intergenic | 45.0% |
| ! | TTTGGAGCTATGGCAACTAC+AGG | + | chr7.2:12829097-12829116 | MS.gene23428:CDS | 45.0% |
| !! | AAGTTTCCTTTGGGACACAG+AGG | + | chr7.2:12829021-12829040 | MS.gene23428:CDS | 45.0% |
| !! | AGGGTGAGTTTTGATGAGGA+GGG | + | chr7.2:12828225-12828244 | MS.gene23428:CDS | 45.0% |
| !! | ATAGTTCCATGGGTTCTGGA+GGG | + | chr7.2:12828349-12828368 | MS.gene23428:CDS | 45.0% |
| !! | GATGTGAGTGGTGATGGTAT+AGG | + | chr7.2:12828294-12828313 | MS.gene23428:CDS | 45.0% |
| ATCATTCCCTCCAGAACCCA+TGG | - | chr7.2:12828358-12828377 | None:intergenic | 50.0% | |
| CACAGTATGGGAAGCTGGTT+TGG | + | chr7.2:12828788-12828807 | MS.gene23428:CDS | 50.0% | |
| CAGTGCAAACAAGACCGTGA+AGG | + | chr7.2:12828706-12828725 | MS.gene23428:intron | 50.0% | |
| CCGCGTATGCAAGTTTCCTT+TGG | + | chr7.2:12829011-12829030 | MS.gene23428:CDS | 50.0% | |
| TCTGTCACAGTATGGGAAGC+TGG | + | chr7.2:12828783-12828802 | MS.gene23428:CDS | 50.0% | |
| TGATGTTGGAGCGAAGTGGT+TGG | - | chr7.2:12827829-12827848 | None:intergenic | 50.0% | |
| TGGATCTGCTAGTATGGCTC+TGG | - | chr7.2:12828749-12828768 | None:intergenic | 50.0% | |
| TTTGATGAGGAGGGACAGGT+TGG | + | chr7.2:12828234-12828253 | MS.gene23428:CDS | 50.0% | |
| ! | CTCAGAAACAATGGGTTCCC+AGG | - | chr7.2:12828435-12828454 | None:intergenic | 50.0% |
| !! | ATGGGTTCTGGAGGGAATGA+TGG | + | chr7.2:12828357-12828376 | MS.gene23428:CDS | 50.0% |
| !! | CAGGGTGAGTTTTGATGAGG+AGG | + | chr7.2:12828224-12828243 | MS.gene23428:CDS | 50.0% |
| !! | CTGGGAACCCATTGTTTCTG+AGG | + | chr7.2:12828433-12828452 | MS.gene23428:CDS | 50.0% |
| !! | GAATAGTACTGGCAGTGGTG+TGG | + | chr7.2:12828170-12828189 | MS.gene23428:CDS | 50.0% |
| !! | GAGTTTTGATGAGGAGGGAC+AGG | + | chr7.2:12828230-12828249 | MS.gene23428:CDS | 50.0% |
| !! | GGACTTGGTGTTGATGTGAG+TGG | + | chr7.2:12828282-12828301 | MS.gene23428:CDS | 50.0% |
| !! | GGTGTTGATGTGAGTGGTGA+TGG | + | chr7.2:12828288-12828307 | MS.gene23428:CDS | 50.0% |
| !! | GTGAGTGGTGATGGTATAGG+TGG | + | chr7.2:12828297-12828316 | MS.gene23428:CDS | 50.0% |
| !! | GTGCTGAATAGTACTGGCAG+TGG | + | chr7.2:12828165-12828184 | MS.gene23428:CDS | 50.0% |
| ACAAGACCGTGAAGGAGCAG+AGG | + | chr7.2:12828714-12828733 | MS.gene23428:CDS | 55.0% | |
| ACAGAGGAAGACGAGGATGC+AGG | + | chr7.2:12829037-12829056 | MS.gene23428:CDS | 55.0% | |
| CGTCTTCCTCTGTGTCCCAA+AGG | - | chr7.2:12829030-12829049 | None:intergenic | 55.0% | |
| GATGGTATAGGTGGCTGCAG+AGG | + | chr7.2:12828306-12828325 | MS.gene23428:CDS | 55.0% | |
| GTATAGGTGGCTGCAGAGGA+GGG | + | chr7.2:12828310-12828329 | MS.gene23428:CDS | 55.0% | |
| TGTTGGAGCGAAGTGGTTGG+TGG | - | chr7.2:12827826-12827845 | None:intergenic | 55.0% | |
| TTGGGACACAGAGGAAGACG+AGG | + | chr7.2:12829030-12829049 | MS.gene23428:CDS | 55.0% | |
| !! | TAGTACTGGCAGTGGTGTGG+TGG | + | chr7.2:12828173-12828192 | MS.gene23428:CDS | 55.0% |
| GGTATAGGTGGCTGCAGAGG+AGG | + | chr7.2:12828309-12828328 | MS.gene23428:CDS | 60.0% | |
| TGCAGAGGAGGGAATGGAGG+TGG | + | chr7.2:12828321-12828340 | MS.gene23428:CDS | 60.0% | |
| !! | TGGAGCGAAGTGGTTGGTGG+TGG | - | chr7.2:12827823-12827842 | None:intergenic | 60.0% |
| GGCTGCAGAGGAGGGAATGG+AGG | + | chr7.2:12828318-12828337 | MS.gene23428:CDS | 65.0% | |
| GGTGGCTGCAGAGGAGGGAA+TGG | + | chr7.2:12828315-12828334 | MS.gene23428:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 12827688 | 12829126 | 12827688 | ID=MS.gene23428 |
| chr7.2 | mRNA | 12827688 | 12829126 | 12827688 | ID=MS.gene23428.t1;Parent=MS.gene23428 |
| chr7.2 | exon | 12827688 | 12828479 | 12827688 | ID=MS.gene23428.t1.exon1;Parent=MS.gene23428.t1 |
| chr7.2 | CDS | 12827688 | 12828479 | 12827688 | ID=cds.MS.gene23428.t1;Parent=MS.gene23428.t1 |
| chr7.2 | exon | 12828709 | 12828881 | 12828709 | ID=MS.gene23428.t1.exon2;Parent=MS.gene23428.t1 |
| chr7.2 | CDS | 12828709 | 12828881 | 12828709 | ID=cds.MS.gene23428.t1;Parent=MS.gene23428.t1 |
| chr7.2 | exon | 12829000 | 12829126 | 12829000 | ID=MS.gene23428.t1.exon3;Parent=MS.gene23428.t1 |
| chr7.2 | CDS | 12829000 | 12829126 | 12829000 | ID=cds.MS.gene23428.t1;Parent=MS.gene23428.t1 |
| Gene Sequence |
| Protein sequence |
