Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23869.t1 | XP_003621654.1 | 95.9 | 390 | 15 | 1 | 1 | 390 | 1 | 389 | 3.40E-178 | 634.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23869.t1 | O80630 | 45.0 | 380 | 136 | 8 | 15 | 389 | 8 | 319 | 6.1e-75 | 282.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23869.t1 | G7KSY8 | 95.9 | 390 | 15 | 1 | 1 | 390 | 1 | 389 | 2.5e-178 | 634.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050329 | MS.gene23869 | 0.802829 | 4.66E-49 | -1.69E-46 |
| MS.gene051996 | MS.gene23869 | 0.841441 | 4.74E-58 | -1.69E-46 |
| MS.gene052011 | MS.gene23869 | 0.825918 | 3.61E-54 | -1.69E-46 |
| MS.gene052223 | MS.gene23869 | 0.83527 | 1.85E-56 | -1.69E-46 |
| MS.gene052706 | MS.gene23869 | 0.802321 | 5.93E-49 | -1.69E-46 |
| MS.gene054183 | MS.gene23869 | -0.803208 | 3.89E-49 | -1.69E-46 |
| MS.gene054277 | MS.gene23869 | 0.811543 | 6.64E-51 | -1.69E-46 |
| MS.gene054742 | MS.gene23869 | 0.830048 | 3.66E-55 | -1.69E-46 |
| MS.gene055601 | MS.gene23869 | 0.805709 | 1.17E-49 | -1.69E-46 |
| MS.gene056330 | MS.gene23869 | 0.844497 | 7.29E-59 | -1.69E-46 |
| MS.gene056690 | MS.gene23869 | 0.801694 | 7.98E-49 | -1.69E-46 |
| MS.gene056691 | MS.gene23869 | 0.833745 | 4.47E-56 | -1.69E-46 |
| MS.gene056899 | MS.gene23869 | 0.82667 | 2.39E-54 | -1.69E-46 |
| MS.gene056920 | MS.gene23869 | 0.853408 | 2.44E-61 | -1.69E-46 |
| MS.gene056922 | MS.gene23869 | 0.823677 | 1.22E-53 | -1.69E-46 |
| MS.gene056923 | MS.gene23869 | 0.837325 | 5.56E-57 | -1.69E-46 |
| MS.gene056924 | MS.gene23869 | 0.846616 | 1.94E-59 | -1.69E-46 |
| MS.gene058218 | MS.gene23869 | 0.800536 | 1.38E-48 | -1.69E-46 |
| MS.gene059043 | MS.gene23869 | 0.809224 | 2.10E-50 | -1.69E-46 |
| MS.gene059891 | MS.gene23869 | 0.804409 | 2.19E-49 | -1.69E-46 |
| MS.gene059892 | MS.gene23869 | 0.813672 | 2.27E-51 | -1.69E-46 |
| MS.gene060087 | MS.gene23869 | 0.815471 | 9.09E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23869.t1 | MTR_7g021300 | 96.410 | 390 | 13 | 1 | 1 | 390 | 1 | 389 | 0.0 | 742 |
| MS.gene23869.t1 | MTR_1g115510 | 62.312 | 398 | 97 | 7 | 1 | 390 | 1 | 353 | 3.41e-154 | 439 |
| MS.gene23869.t1 | MTR_4g062460 | 45.957 | 235 | 109 | 6 | 159 | 388 | 36 | 257 | 1.62e-59 | 194 |
| MS.gene23869.t1 | MTR_4g062520 | 43.220 | 236 | 120 | 6 | 157 | 389 | 78 | 302 | 7.26e-44 | 154 |
| MS.gene23869.t1 | MTR_4g062470 | 43.220 | 236 | 119 | 6 | 157 | 389 | 80 | 303 | 1.16e-43 | 154 |
| MS.gene23869.t1 | MTR_1g046800 | 39.344 | 244 | 115 | 9 | 154 | 388 | 29 | 248 | 2.55e-39 | 141 |
| MS.gene23869.t1 | MTR_1g046500 | 37.097 | 248 | 115 | 7 | 154 | 388 | 29 | 248 | 3.12e-38 | 138 |
| MS.gene23869.t1 | MTR_1g046490 | 35.060 | 251 | 133 | 7 | 147 | 388 | 5 | 234 | 2.79e-34 | 127 |
| MS.gene23869.t1 | MTR_1g115515 | 43.443 | 122 | 63 | 2 | 268 | 387 | 114 | 231 | 1.66e-21 | 92.8 |
| MS.gene23869.t1 | MTR_4g122110 | 35.294 | 102 | 63 | 1 | 264 | 365 | 60 | 158 | 3.10e-12 | 65.1 |
| MS.gene23869.t1 | MTR_1g054525 | 31.690 | 142 | 83 | 5 | 249 | 388 | 60 | 189 | 2.18e-11 | 62.8 |
| MS.gene23869.t1 | MTR_4g013310 | 31.356 | 118 | 70 | 4 | 272 | 388 | 87 | 194 | 2.61e-11 | 62.8 |
| MS.gene23869.t1 | MTR_4g122130 | 31.624 | 117 | 74 | 3 | 250 | 365 | 47 | 158 | 2.88e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23869.t1 | AT2G39430 | 61.765 | 238 | 87 | 4 | 156 | 389 | 82 | 319 | 1.63e-91 | 278 |
| MS.gene23869.t1 | AT3G55230 | 58.898 | 236 | 93 | 4 | 158 | 389 | 67 | 302 | 1.43e-83 | 257 |
| MS.gene23869.t1 | AT1G07730 | 36.364 | 407 | 199 | 13 | 18 | 389 | 7 | 388 | 1.44e-52 | 180 |
| MS.gene23869.t1 | AT2G28670 | 45.106 | 235 | 113 | 5 | 163 | 389 | 209 | 435 | 6.72e-49 | 171 |
| MS.gene23869.t1 | AT2G28670 | 44.635 | 233 | 113 | 5 | 165 | 389 | 1 | 225 | 1.54e-48 | 164 |
| MS.gene23869.t1 | AT3G24020 | 34.894 | 235 | 133 | 5 | 154 | 388 | 27 | 241 | 2.59e-35 | 130 |
| MS.gene23869.t1 | AT4G13580 | 35.146 | 239 | 127 | 6 | 154 | 388 | 28 | 242 | 8.43e-35 | 129 |
| MS.gene23869.t1 | AT2G21100 | 40.426 | 94 | 49 | 3 | 271 | 362 | 75 | 163 | 5.80e-12 | 64.7 |
| MS.gene23869.t1 | AT2G21100 | 40.426 | 94 | 49 | 3 | 271 | 362 | 75 | 163 | 5.80e-12 | 64.7 |
| MS.gene23869.t1 | AT3G13650 | 33.051 | 118 | 71 | 4 | 271 | 384 | 73 | 186 | 4.26e-11 | 62.0 |
Find 113 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGGTTGTGGAAGTTCTTC+TGG | 0.253047 | 7.1:-77058739 | None:intergenic |
| GGCACAAGTAACACTGTTTC+TGG | 0.257411 | 7.1:+77059105 | MS.gene23869:CDS |
| GTGACAATGCCGTTGAGTTT+AGG | 0.257911 | 7.1:-77059015 | None:intergenic |
| AATGGAATTCCTCCAGTAAT+AGG | 0.258847 | 7.1:-77058985 | None:intergenic |
| TGACAATGCCGTTGAGTTTA+GGG | 0.260469 | 7.1:-77059014 | None:intergenic |
| GTTTCGGCGGGTAATCTTCC+TGG | 0.290220 | 7.1:+77059147 | MS.gene23869:CDS |
| GGAAGTGGCACTTCAGCTTC+TGG | 0.302216 | 7.1:-77058757 | None:intergenic |
| AACAATCTCTTCCCTATTAC+TGG | 0.302816 | 7.1:+77058973 | MS.gene23869:CDS |
| GCACTTGGCGAAGCGGTAAT+AGG | 0.311234 | 7.1:-77058574 | None:intergenic |
| GGGAGTGGCACCTCAGCTTC+TGG | 0.316576 | 7.1:-77058784 | None:intergenic |
| GCTCATGTTCTTCCGTTAAC+TGG | 0.330883 | 7.1:-77059221 | None:intergenic |
| AATACTGCAACACCGGTTTC+TGG | 0.347236 | 7.1:+77058625 | MS.gene23869:CDS |
| GCTGTAACCGGCGTTGCATT+AGG | 0.349697 | 7.1:-77058814 | None:intergenic |
| GAAGAGATTGTTATTAAGCT+TGG | 0.351880 | 7.1:-77058962 | None:intergenic |
| GGCACTTCAGCTTCTGGTTG+TGG | 0.365626 | 7.1:-77058751 | None:intergenic |
| ATCACTGCTATCTCAGATTC+TGG | 0.369049 | 7.1:-77059405 | None:intergenic |
| GATGACACTATAAGTCTGTT+TGG | 0.375198 | 7.1:+77059363 | MS.gene23869:CDS |
| TTCTTCATGCATGATATCCT+TGG | 0.388666 | 7.1:+77058868 | MS.gene23869:CDS |
| TAAGTCTGTTTGGGATTCAT+AGG | 0.390535 | 7.1:+77059373 | MS.gene23869:CDS |
| TTGAGTTTAGGGTTAACTAA+TGG | 0.391976 | 7.1:-77059003 | None:intergenic |
| TCAGCTTCTGGCGGTGGAAG+TGG | 0.398294 | 7.1:-77058772 | None:intergenic |
| GGCACCTCAGCTTCTGGCGG+TGG | 0.398310 | 7.1:-77058778 | None:intergenic |
| ATGACACTATAAGTCTGTTT+GGG | 0.400912 | 7.1:+77059364 | MS.gene23869:CDS |
| AACGACGGCTCTTTCGCTAT+AGG | 0.401798 | 7.1:-77058841 | None:intergenic |
| ATCTAGGATTCTTGCAGAGT+TGG | 0.403022 | 7.1:-77058464 | None:intergenic |
| GCACTGAGACCTACAAGGTT+TGG | 0.410828 | 7.1:-77059051 | None:intergenic |
| CACTGAGACCTACAAGGTTT+GGG | 0.416021 | 7.1:-77059050 | None:intergenic |
| CAGAACCAAACATAAGCTTC+TGG | 0.418523 | 7.1:-77059182 | None:intergenic |
| TACCTTCAGTAGGTTCTCTA+TGG | 0.422239 | 7.1:-77059469 | None:intergenic |
| AACAATCTCCCAAACCTTGT+AGG | 0.423141 | 7.1:+77059042 | MS.gene23869:CDS |
| ATGGAATTCCTCCAGTAATA+GGG | 0.425850 | 7.1:-77058984 | None:intergenic |
| TTCATGCATGATATCCTTGG+TGG | 0.426597 | 7.1:+77058871 | MS.gene23869:CDS |
| GAGCTGGATTCTTCTGTGAT+AGG | 0.441022 | 7.1:+77059240 | MS.gene23869:CDS |
| TCTGGTGTTTCATCTGTGGT+AGG | 0.446439 | 7.1:-77058721 | None:intergenic |
| AAGTTGTGATTAGGAGGAAA+AGG | 0.462919 | 7.1:-77058432 | None:intergenic |
| ACAGTCCAGAAGCTTATGTT+TGG | 0.469595 | 7.1:+77059177 | MS.gene23869:CDS |
| GCCGAGGGAATGGCAGCTCC+AGG | 0.470305 | 7.1:-77058529 | None:intergenic |
| TGCAGTATTGGTGGTGGTGG+TGG | 0.470813 | 7.1:-77058611 | None:intergenic |
| GTTGAGAGTCAAATTCATCT+AGG | 0.473605 | 7.1:-77058480 | None:intergenic |
| AGAAACCGGTGTTGCAGTAT+TGG | 0.475414 | 7.1:-77058623 | None:intergenic |
| GACTCTCAACCACAAGCTAT+AGG | 0.480463 | 7.1:+77058493 | MS.gene23869:CDS |
| TAGCAGTGATTGGTGGGACT+GGG | 0.483880 | 7.1:+77059418 | MS.gene23869:CDS |
| AGTGATTGATGACCAGTTAA+CGG | 0.488842 | 7.1:+77059209 | MS.gene23869:CDS |
| AACAGACTTATAGTGTCATC+AGG | 0.492488 | 7.1:-77059360 | None:intergenic |
| GGCGTTGCATTAGGAACAGC+CGG | 0.498749 | 7.1:-77058805 | None:intergenic |
| ACTGGAGGGATGTCCACAAC+TGG | 0.504552 | 7.1:-77058691 | None:intergenic |
| TTGGTATCTCCACCAGAAAC+CGG | 0.506487 | 7.1:-77058637 | None:intergenic |
| TATAGTTGTGGCCGAGGGAA+TGG | 0.507876 | 7.1:-77058539 | None:intergenic |
| AGATTACCCGCCGAAACAAA+AGG | 0.508321 | 7.1:-77059141 | None:intergenic |
| GTAGCAAACAGTGATGTAAC+CGG | 0.514157 | 7.1:+77058928 | MS.gene23869:CDS |
| CTGTGGTATAGTTGTGGCCG+AGG | 0.515271 | 7.1:-77058545 | None:intergenic |
| TCTGTGGTAGGACTCACAAC+TGG | 0.518334 | 7.1:-77058709 | None:intergenic |
| TTGTTATTAAGCTTGGAGAA+TGG | 0.519150 | 7.1:-77058955 | None:intergenic |
| ACCTGGAGCTGCCATTCCCT+CGG | 0.520471 | 7.1:+77058528 | MS.gene23869:CDS |
| CACCACCAATACTGCAACAC+CGG | 0.520502 | 7.1:+77058618 | MS.gene23869:CDS |
| CAGCCCCATCTGTGGTGTGT+TGG | 0.521045 | 7.1:-77059494 | None:intergenic |
| CGGCGGGTAATCTTCCTGGT+GGG | 0.526197 | 7.1:+77059151 | MS.gene23869:CDS |
| TTCTTCTGGTGTTTCATCTG+TGG | 0.526975 | 7.1:-77058725 | None:intergenic |
| TGAGACTAAAGGGTCTGGAT+TGG | 0.527431 | 7.1:-77058656 | None:intergenic |
| AGAAGCTGAGGTGCCACTCC+CGG | 0.527504 | 7.1:+77058786 | MS.gene23869:CDS |
| GGAATGGCAGCTCCAGGTCC+TGG | 0.529908 | 7.1:-77058523 | None:intergenic |
| TGTGTTGGTCTACCTTCAGT+AGG | 0.533325 | 7.1:-77059479 | None:intergenic |
| GCTGCAGGTGTTATCGCACT+TGG | 0.538443 | 7.1:-77058589 | None:intergenic |
| GAATCTGAGATAGCAGTGAT+TGG | 0.539843 | 7.1:+77059408 | MS.gene23869:CDS |
| ATAGCAGTGATTGGTGGGAC+TGG | 0.541882 | 7.1:+77059417 | MS.gene23869:CDS |
| GCATTAGGAACAGCCGGGAG+TGG | 0.543527 | 7.1:-77058799 | None:intergenic |
| CTGAGATAGCAGTGATTGGT+GGG | 0.543629 | 7.1:+77059412 | MS.gene23869:CDS |
| TGTTGCAGTATTGGTGGTGG+TGG | 0.552086 | 7.1:-77058614 | None:intergenic |
| ACTTCCACCGCCAGAAGCTG+AGG | 0.569122 | 7.1:+77058774 | MS.gene23869:CDS |
| CCATCAGCAAGAGTGGTAGC+AGG | 0.569287 | 7.1:+77058901 | MS.gene23869:CDS |
| CACGGGGCTGAGCATCATGA+TGG | 0.571570 | 7.1:+77059336 | MS.gene23869:CDS |
| CCTGCTACCACTCTTGCTGA+TGG | 0.572490 | 7.1:-77058901 | None:intergenic |
| TACTTGGCAAGCTCATTGGA+TGG | 0.573716 | 7.1:+77059279 | MS.gene23869:CDS |
| GAGCAGCACTGAGACCTACA+AGG | 0.573733 | 7.1:-77059056 | None:intergenic |
| TCGGCGGGTAATCTTCCTGG+TGG | 0.575082 | 7.1:+77059150 | MS.gene23869:CDS |
| TAGACCAACACACCACAGAT+GGG | 0.578508 | 7.1:+77059490 | MS.gene23869:CDS |
| AAGCTTGGAGAATGGTAAGC+CGG | 0.579168 | 7.1:-77058947 | None:intergenic |
| GTAGACCAACACACCACAGA+TGG | 0.583033 | 7.1:+77059489 | MS.gene23869:CDS |
| AGAAAATGAAGCACCAGTTG+TGG | 0.586435 | 7.1:+77058678 | MS.gene23869:CDS |
| AACCGGTGTTGCAGTATTGG+TGG | 0.588594 | 7.1:-77058620 | None:intergenic |
| GGTAGATTGCCTATAGCTTG+TGG | 0.588861 | 7.1:-77058502 | None:intergenic |
| TCTGAGATAGCAGTGATTGG+TGG | 0.591085 | 7.1:+77059411 | MS.gene23869:CDS |
| TTCTGGACTGTAAACCCACC+AGG | 0.593913 | 7.1:-77059165 | None:intergenic |
| ATAGGCAATCTACCAGGACC+TGG | 0.594353 | 7.1:+77058511 | MS.gene23869:CDS |
| ACTTATCTGTGGTATAGTTG+TGG | 0.596688 | 7.1:-77058551 | None:intergenic |
| CGGTGTTGCAGTATTGGTGG+TGG | 0.599491 | 7.1:-77058617 | None:intergenic |
| AGTGGCACCTCAGCTTCTGG+CGG | 0.600283 | 7.1:-77058781 | None:intergenic |
| TACCCGCCGAAACAAAAGGT+TGG | 0.602825 | 7.1:-77059137 | None:intergenic |
| ATCACATCCATCAGCAAGAG+TGG | 0.602915 | 7.1:+77058894 | MS.gene23869:CDS |
| CAAGCTATAGGCAATCTACC+AGG | 0.605391 | 7.1:+77058505 | MS.gene23869:CDS |
| GGCTGTTCCTAATGCAACGC+CGG | 0.610188 | 7.1:+77058807 | MS.gene23869:CDS |
| GTTAACGGAAGAACATGAGC+TGG | 0.611367 | 7.1:+77059224 | MS.gene23869:CDS |
| TGTGGTATAGTTGTGGCCGA+GGG | 0.612073 | 7.1:-77058544 | None:intergenic |
| GATGGTGTCAGCCCCATCTG+TGG | 0.622116 | 7.1:-77059502 | None:intergenic |
| ACTGCAACACCGGTTTCTGG+TGG | 0.624340 | 7.1:+77058628 | MS.gene23869:CDS |
| TCATACAAAATCCTGACACA+TGG | 0.624737 | 7.1:+77058395 | MS.gene23869:CDS |
| TGTTATCGCACTTGGCGAAG+CGG | 0.635626 | 7.1:-77058581 | None:intergenic |
| GGGAAGTATGAGAATGCTAG+AGG | 0.638312 | 7.1:+77059438 | MS.gene23869:CDS |
| TGGTAGGACTCACAACTGGA+GGG | 0.642055 | 7.1:-77058705 | None:intergenic |
| TTAGTTAACCCTAAACTCAA+CGG | 0.648399 | 7.1:+77059006 | MS.gene23869:CDS |
| TGCCATAGAGAACCTACTGA+AGG | 0.654395 | 7.1:+77059467 | MS.gene23869:CDS |
| GTGGTAGGACTCACAACTGG+AGG | 0.657302 | 7.1:-77058706 | None:intergenic |
| AATCTCTTCCCTATTACTGG+AGG | 0.659877 | 7.1:+77058976 | MS.gene23869:CDS |
| GCGTTGCATTAGGAACAGCC+GGG | 0.662946 | 7.1:-77058804 | None:intergenic |
| AGACCAACACACCACAGATG+GGG | 0.667608 | 7.1:+77059491 | MS.gene23869:CDS |
| TCTGTGATAGGAAGAGCACA+AGG | 0.677760 | 7.1:+77059252 | MS.gene23869:CDS |
| ACAAGTAACACTGTTTCTGG+CGG | 0.689812 | 7.1:+77059108 | MS.gene23869:CDS |
| GTAGATACTGAAATGCAAGA+TGG | 0.703316 | 7.1:-77059520 | None:intergenic |
| CTGTGATAGGAAGAGCACAA+GGG | 0.711518 | 7.1:+77059253 | MS.gene23869:CDS |
| GCGGTAATAGGACTTATCTG+TGG | 0.711972 | 7.1:-77058562 | None:intergenic |
| CTGATGGATGTGATCCACCA+AGG | 0.726786 | 7.1:-77058885 | None:intergenic |
| ACATTAGTCACTACTCAGTG+AGG | 0.730761 | 7.1:-77059542 | None:intergenic |
| TGCATGAAGAAAGAAAACGA+CGG | 0.769494 | 7.1:-77058856 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CAATCAAAAAAGTTGTGATT+AGG | - | chr7.1:77058444-77058463 | None:intergenic | 25.0% |
| ATGACACTATAAGTCTGTTT+GGG | + | chr7.1:77059364-77059383 | MS.gene23869:CDS | 30.0% | |
| CACAAAAACAGTAATCACAA+TGG | - | chr7.1:77059316-77059335 | None:intergenic | 30.0% | |
| TCAAAAAAGTTGTGATTAGG+AGG | - | chr7.1:77058441-77058460 | None:intergenic | 30.0% | |
| TTAGTTAACCCTAAACTCAA+CGG | + | chr7.1:77059006-77059025 | MS.gene23869:CDS | 30.0% | |
| ! | AGGATTTTGTATGAAAACAC+TGG | - | chr7.1:77058389-77058408 | None:intergenic | 30.0% |
| ! | GAAGAGATTGTTATTAAGCT+TGG | - | chr7.1:77058965-77058984 | None:intergenic | 30.0% |
| ! | TTGAGTTTAGGGTTAACTAA+TGG | - | chr7.1:77059006-77059025 | None:intergenic | 30.0% |
| ! | TTGTTATTAAGCTTGGAGAA+TGG | - | chr7.1:77058958-77058977 | None:intergenic | 30.0% |
| !!! | CTTCATTTTCTGAGACTAAA+GGG | - | chr7.1:77058669-77058688 | None:intergenic | 30.0% |
| AACAATCTCTTCCCTATTAC+TGG | + | chr7.1:77058973-77058992 | MS.gene23869:CDS | 35.0% | |
| AACAGACTTATAGTGTCATC+AGG | - | chr7.1:77059363-77059382 | None:intergenic | 35.0% | |
| AAGTTGTGATTAGGAGGAAA+AGG | - | chr7.1:77058435-77058454 | None:intergenic | 35.0% | |
| AATGGAATTCCTCCAGTAAT+AGG | - | chr7.1:77058988-77059007 | None:intergenic | 35.0% | |
| ACTTATCTGTGGTATAGTTG+TGG | - | chr7.1:77058554-77058573 | None:intergenic | 35.0% | |
| ATGGAATTCCTCCAGTAATA+GGG | - | chr7.1:77058987-77059006 | None:intergenic | 35.0% | |
| GATGACACTATAAGTCTGTT+TGG | + | chr7.1:77059363-77059382 | MS.gene23869:CDS | 35.0% | |
| GTAGATACTGAAATGCAAGA+TGG | - | chr7.1:77059523-77059542 | None:intergenic | 35.0% | |
| GTTGAGAGTCAAATTCATCT+AGG | - | chr7.1:77058483-77058502 | None:intergenic | 35.0% | |
| TCATACAAAATCCTGACACA+TGG | + | chr7.1:77058395-77058414 | MS.gene23869:CDS | 35.0% | |
| TCGACTGTATTCAAAAACAG+TGG | + | chr7.1:77059084-77059103 | MS.gene23869:CDS | 35.0% | |
| TGCATGAAGAAAGAAAACGA+CGG | - | chr7.1:77058859-77058878 | None:intergenic | 35.0% | |
| TTCTTCATGCATGATATCCT+TGG | + | chr7.1:77058868-77058887 | MS.gene23869:CDS | 35.0% | |
| ! | AGTGATTGATGACCAGTTAA+CGG | + | chr7.1:77059209-77059228 | MS.gene23869:CDS | 35.0% |
| ! | TAAGTCTGTTTGGGATTCAT+AGG | + | chr7.1:77059373-77059392 | MS.gene23869:CDS | 35.0% |
| !!! | ACTGTTTTTGAATACAGTCG+AGG | - | chr7.1:77059085-77059104 | None:intergenic | 35.0% |
| !!! | GCTTCATTTTCTGAGACTAA+AGG | - | chr7.1:77058670-77058689 | None:intergenic | 35.0% |
| !!! | GTGATTACTGTTTTTGTGCA+CGG | + | chr7.1:77059318-77059337 | MS.gene23869:CDS | 35.0% |
| !!! | TGATTACTGTTTTTGTGCAC+GGG | + | chr7.1:77059319-77059338 | MS.gene23869:CDS | 35.0% |
| AACAATCTCCCAAACCTTGT+AGG | + | chr7.1:77059042-77059061 | MS.gene23869:CDS | 40.0% | |
| AATCTCTTCCCTATTACTGG+AGG | + | chr7.1:77058976-77058995 | MS.gene23869:CDS | 40.0% | |
| ACAGTCCAGAAGCTTATGTT+TGG | + | chr7.1:77059177-77059196 | MS.gene23869:CDS | 40.0% | |
| ATCACTGCTATCTCAGATTC+TGG | - | chr7.1:77059408-77059427 | None:intergenic | 40.0% | |
| CAGAACCAAACATAAGCTTC+TGG | - | chr7.1:77059185-77059204 | None:intergenic | 40.0% | |
| GTAGCAAACAGTGATGTAAC+CGG | + | chr7.1:77058928-77058947 | MS.gene23869:CDS | 40.0% | |
| TACCTTCAGTAGGTTCTCTA+TGG | - | chr7.1:77059472-77059491 | None:intergenic | 40.0% | |
| TGACAATGCCGTTGAGTTTA+GGG | - | chr7.1:77059017-77059036 | None:intergenic | 40.0% | |
| TTCATGCATGATATCCTTGG+TGG | + | chr7.1:77058871-77058890 | MS.gene23869:CDS | 40.0% | |
| TTCTTCTGGTGTTTCATCTG+TGG | - | chr7.1:77058728-77058747 | None:intergenic | 40.0% | |
| ! | AGAAAATGAAGCACCAGTTG+TGG | + | chr7.1:77058678-77058697 | MS.gene23869:CDS | 40.0% |
| ! | AGTGTAGTTTTCCATGTGTC+AGG | - | chr7.1:77058409-77058428 | None:intergenic | 40.0% |
| ! | ATCTAGGATTCTTGCAGAGT+TGG | - | chr7.1:77058467-77058486 | None:intergenic | 40.0% |
| ! | GAATCTGAGATAGCAGTGAT+TGG | + | chr7.1:77059408-77059427 | MS.gene23869:CDS | 40.0% |
| ! | GTTTTACTTGGCAAGCTCAT+TGG | + | chr7.1:77059275-77059294 | MS.gene23869:CDS | 40.0% |
| !! | AAGAGCACAAGGGTTTTACT+TGG | + | chr7.1:77059263-77059282 | MS.gene23869:CDS | 40.0% |
| !! | ACAAGTAACACTGTTTCTGG+CGG | + | chr7.1:77059108-77059127 | MS.gene23869:CDS | 40.0% |
| !! | CGACAACCAACCTTTTGTTT+CGG | + | chr7.1:77059131-77059150 | MS.gene23869:CDS | 40.0% |
| !! | GCTATAGGTTTTGCTGTAAC+CGG | - | chr7.1:77058829-77058848 | None:intergenic | 40.0% |
| !!! | GATTACTGTTTTTGTGCACG+GGG | + | chr7.1:77059320-77059339 | MS.gene23869:CDS | 40.0% |
| !!! | TTTTCTGAGACTAAAGGGTC+TGG | - | chr7.1:77058664-77058683 | None:intergenic | 40.0% |
| AAGCTTGGAGAATGGTAAGC+CGG | - | chr7.1:77058950-77058969 | None:intergenic | 45.0% | |
| AGATTACCCGCCGAAACAAA+AGG | - | chr7.1:77059144-77059163 | None:intergenic | 45.0% | |
| ATCACATCCATCAGCAAGAG+TGG | + | chr7.1:77058894-77058913 | MS.gene23869:CDS | 45.0% | |
| CAAGCTATAGGCAATCTACC+AGG | + | chr7.1:77058505-77058524 | MS.gene23869:CDS | 45.0% | |
| CACTGAGACCTACAAGGTTT+GGG | - | chr7.1:77059053-77059072 | None:intergenic | 45.0% | |
| CTGAGATAGCAGTGATTGGT+GGG | + | chr7.1:77059412-77059431 | MS.gene23869:CDS | 45.0% | |
| GACTCTCAACCACAAGCTAT+AGG | + | chr7.1:77058493-77058512 | MS.gene23869:CDS | 45.0% | |
| GAGCTGGATTCTTCTGTGAT+AGG | + | chr7.1:77059240-77059259 | MS.gene23869:CDS | 45.0% | |
| GCGGTAATAGGACTTATCTG+TGG | - | chr7.1:77058565-77058584 | None:intergenic | 45.0% | |
| GCTCATGTTCTTCCGTTAAC+TGG | - | chr7.1:77059224-77059243 | None:intergenic | 45.0% | |
| GGCACAAGTAACACTGTTTC+TGG | + | chr7.1:77059105-77059124 | MS.gene23869:CDS | 45.0% | |
| GGTAGATTGCCTATAGCTTG+TGG | - | chr7.1:77058505-77058524 | None:intergenic | 45.0% | |
| GTGACAATGCCGTTGAGTTT+AGG | - | chr7.1:77059018-77059037 | None:intergenic | 45.0% | |
| GTTAACGGAAGAACATGAGC+TGG | + | chr7.1:77059224-77059243 | MS.gene23869:CDS | 45.0% | |
| TACTTGGCAAGCTCATTGGA+TGG | + | chr7.1:77059279-77059298 | MS.gene23869:CDS | 45.0% | |
| TAGACCAACACACCACAGAT+GGG | + | chr7.1:77059490-77059509 | MS.gene23869:CDS | 45.0% | |
| TCTGGTGTTTCATCTGTGGT+AGG | - | chr7.1:77058724-77058743 | None:intergenic | 45.0% | |
| TCTGGTTGTGGAAGTTCTTC+TGG | - | chr7.1:77058742-77058761 | None:intergenic | 45.0% | |
| TGAGACTAAAGGGTCTGGAT+TGG | - | chr7.1:77058659-77058678 | None:intergenic | 45.0% | |
| TGCCATAGAGAACCTACTGA+AGG | + | chr7.1:77059467-77059486 | MS.gene23869:CDS | 45.0% | |
| TTGGTATCTCCACCAGAAAC+CGG | - | chr7.1:77058640-77058659 | None:intergenic | 45.0% | |
| ! | CTGTGATAGGAAGAGCACAA+GGG | + | chr7.1:77059253-77059272 | MS.gene23869:CDS | 45.0% |
| ! | GGGAAGTATGAGAATGCTAG+AGG | + | chr7.1:77059438-77059457 | MS.gene23869:CDS | 45.0% |
| ! | TCTGAGATAGCAGTGATTGG+TGG | + | chr7.1:77059411-77059430 | MS.gene23869:CDS | 45.0% |
| ! | TCTGTGATAGGAAGAGCACA+AGG | + | chr7.1:77059252-77059271 | MS.gene23869:CDS | 45.0% |
| ! | TGTGTTGGTCTACCTTCAGT+AGG | - | chr7.1:77059482-77059501 | None:intergenic | 45.0% |
| !! | AACCAACCTTTTGTTTCGGC+GGG | + | chr7.1:77059135-77059154 | MS.gene23869:CDS | 45.0% |
| !! | AATACTGCAACACCGGTTTC+TGG | + | chr7.1:77058625-77058644 | MS.gene23869:CDS | 45.0% |
| !! | AGAAACCGGTGTTGCAGTAT+TGG | - | chr7.1:77058626-77058645 | None:intergenic | 45.0% |
| !! | CAACCAACCTTTTGTTTCGG+CGG | + | chr7.1:77059134-77059153 | MS.gene23869:CDS | 45.0% |
| AACGACGGCTCTTTCGCTAT+AGG | - | chr7.1:77058844-77058863 | None:intergenic | 50.0% | |
| AGACCAACACACCACAGATG+GGG | + | chr7.1:77059491-77059510 | MS.gene23869:CDS | 50.0% | |
| ATAGCAGTGATTGGTGGGAC+TGG | + | chr7.1:77059417-77059436 | MS.gene23869:CDS | 50.0% | |
| ATAGGCAATCTACCAGGACC+TGG | + | chr7.1:77058511-77058530 | MS.gene23869:CDS | 50.0% | |
| CACCACCAATACTGCAACAC+CGG | + | chr7.1:77058618-77058637 | MS.gene23869:CDS | 50.0% | |
| GCACTGAGACCTACAAGGTT+TGG | - | chr7.1:77059054-77059073 | None:intergenic | 50.0% | |
| GTAGACCAACACACCACAGA+TGG | + | chr7.1:77059489-77059508 | MS.gene23869:CDS | 50.0% | |
| TACCCGCCGAAACAAAAGGT+TGG | - | chr7.1:77059140-77059159 | None:intergenic | 50.0% | |
| TAGCAGTGATTGGTGGGACT+GGG | + | chr7.1:77059418-77059437 | MS.gene23869:CDS | 50.0% | |
| TATAGTTGTGGCCGAGGGAA+TGG | - | chr7.1:77058542-77058561 | None:intergenic | 50.0% | |
| TCTGTGGTAGGACTCACAAC+TGG | - | chr7.1:77058712-77058731 | None:intergenic | 50.0% | |
| TGGTAGGACTCACAACTGGA+GGG | - | chr7.1:77058708-77058727 | None:intergenic | 50.0% | |
| TGTGGTATAGTTGTGGCCGA+GGG | - | chr7.1:77058547-77058566 | None:intergenic | 50.0% | |
| TGTTATCGCACTTGGCGAAG+CGG | - | chr7.1:77058584-77058603 | None:intergenic | 50.0% | |
| TTCTGGACTGTAAACCCACC+AGG | - | chr7.1:77059168-77059187 | None:intergenic | 50.0% | |
| ! | CTGATGGATGTGATCCACCA+AGG | - | chr7.1:77058888-77058907 | None:intergenic | 50.0% |
| !! | AACCGGTGTTGCAGTATTGG+TGG | - | chr7.1:77058623-77058642 | None:intergenic | 50.0% |
| !! | TGTTGCAGTATTGGTGGTGG+TGG | - | chr7.1:77058617-77058636 | None:intergenic | 50.0% |
| ACTGGAGGGATGTCCACAAC+TGG | - | chr7.1:77058694-77058713 | None:intergenic | 55.0% | |
| CCATCAGCAAGAGTGGTAGC+AGG | + | chr7.1:77058901-77058920 | MS.gene23869:CDS | 55.0% | |
| CCTGCTACCACTCTTGCTGA+TGG | - | chr7.1:77058904-77058923 | None:intergenic | 55.0% | |
| CTGTGGTATAGTTGTGGCCG+AGG | - | chr7.1:77058548-77058567 | None:intergenic | 55.0% | |
| GCACTTGGCGAAGCGGTAAT+AGG | - | chr7.1:77058577-77058596 | None:intergenic | 55.0% | |
| GCGTTGCATTAGGAACAGCC+GGG | - | chr7.1:77058807-77058826 | None:intergenic | 55.0% | |
| GCTGTAACCGGCGTTGCATT+AGG | - | chr7.1:77058817-77058836 | None:intergenic | 55.0% | |
| GGAAGTGGCACTTCAGCTTC+TGG | - | chr7.1:77058760-77058779 | None:intergenic | 55.0% | |
| GGCGTTGCATTAGGAACAGC+CGG | - | chr7.1:77058808-77058827 | None:intergenic | 55.0% | |
| GGCTGTTCCTAATGCAACGC+CGG | + | chr7.1:77058807-77058826 | MS.gene23869:CDS | 55.0% | |
| GTGGTAGGACTCACAACTGG+AGG | - | chr7.1:77058709-77058728 | None:intergenic | 55.0% | |
| GTTTCGGCGGGTAATCTTCC+TGG | + | chr7.1:77059147-77059166 | MS.gene23869:CDS | 55.0% | |
| ! | GAGCAGCACTGAGACCTACA+AGG | - | chr7.1:77059059-77059078 | None:intergenic | 55.0% |
| ! | GCTGCAGGTGTTATCGCACT+TGG | - | chr7.1:77058592-77058611 | None:intergenic | 55.0% |
| ! | GGCACTTCAGCTTCTGGTTG+TGG | - | chr7.1:77058754-77058773 | None:intergenic | 55.0% |
| !! | ACTGCAACACCGGTTTCTGG+TGG | + | chr7.1:77058628-77058647 | MS.gene23869:CDS | 55.0% |
| !! | CGGTGTTGCAGTATTGGTGG+TGG | - | chr7.1:77058620-77058639 | None:intergenic | 55.0% |
| !! | TGCAGTATTGGTGGTGGTGG+TGG | - | chr7.1:77058614-77058633 | None:intergenic | 55.0% |
| ACCTGGAGCTGCCATTCCCT+CGG | + | chr7.1:77058528-77058547 | MS.gene23869:CDS | 60.0% | |
| ACTTCCACCGCCAGAAGCTG+AGG | + | chr7.1:77058774-77058793 | MS.gene23869:CDS | 60.0% | |
| AGTGGCACCTCAGCTTCTGG+CGG | - | chr7.1:77058784-77058803 | None:intergenic | 60.0% | |
| CACGGGGCTGAGCATCATGA+TGG | + | chr7.1:77059336-77059355 | MS.gene23869:CDS | 60.0% | |
| CAGCCCCATCTGTGGTGTGT+TGG | - | chr7.1:77059497-77059516 | None:intergenic | 60.0% | |
| CGGCGGGTAATCTTCCTGGT+GGG | + | chr7.1:77059151-77059170 | MS.gene23869:CDS | 60.0% | |
| GCATTAGGAACAGCCGGGAG+TGG | - | chr7.1:77058802-77058821 | None:intergenic | 60.0% | |
| TCAGCTTCTGGCGGTGGAAG+TGG | - | chr7.1:77058775-77058794 | None:intergenic | 60.0% | |
| TCGGCGGGTAATCTTCCTGG+TGG | + | chr7.1:77059150-77059169 | MS.gene23869:CDS | 60.0% | |
| ! | GATGGTGTCAGCCCCATCTG+TGG | - | chr7.1:77059505-77059524 | None:intergenic | 60.0% |
| !! | AGAAGCTGAGGTGCCACTCC+CGG | + | chr7.1:77058786-77058805 | MS.gene23869:CDS | 60.0% |
| GGAATGGCAGCTCCAGGTCC+TGG | - | chr7.1:77058526-77058545 | None:intergenic | 65.0% | |
| GGGAGTGGCACCTCAGCTTC+TGG | - | chr7.1:77058787-77058806 | None:intergenic | 65.0% | |
| !! | TTGGTGGTGGTGGTGGCTGC+AGG | - | chr7.1:77058607-77058626 | None:intergenic | 65.0% |
| GCCGAGGGAATGGCAGCTCC+AGG | - | chr7.1:77058532-77058551 | None:intergenic | 70.0% | |
| GGCACCTCAGCTTCTGGCGG+TGG | - | chr7.1:77058781-77058800 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 77058382 | 77059554 | 77058382 | ID=MS.gene23869 |
| chr7.1 | mRNA | 77058382 | 77059554 | 77058382 | ID=MS.gene23869.t1;Parent=MS.gene23869 |
| chr7.1 | exon | 77058382 | 77059554 | 77058382 | ID=MS.gene23869.t1.exon1;Parent=MS.gene23869.t1 |
| chr7.1 | CDS | 77058382 | 77059554 | 77058382 | ID=cds.MS.gene23869.t1;Parent=MS.gene23869.t1 |
| Gene Sequence |
| Protein sequence |
