Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23983.t1 | XP_003625359.2 | 100 | 140 | 0 | 0 | 1 | 140 | 1 | 140 | 1.20E-72 | 282.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23983.t1 | P49690 | 97.1 | 140 | 4 | 0 | 1 | 140 | 1 | 140 | 1.2e-73 | 276.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23983.t1 | B7FMQ6 | 100.0 | 140 | 0 | 0 | 1 | 140 | 1 | 140 | 8.6e-73 | 282.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049857 | MS.gene23983 | 0.815459 | 9.14E-52 | -1.69E-46 |
| MS.gene050277 | MS.gene23983 | 0.801823 | 7.51E-49 | -1.69E-46 |
| MS.gene051063 | MS.gene23983 | 0.818439 | 1.96E-52 | -1.69E-46 |
| MS.gene051330 | MS.gene23983 | 0.817496 | 3.20E-52 | -1.69E-46 |
| MS.gene051746 | MS.gene23983 | 0.805698 | 1.18E-49 | -1.69E-46 |
| MS.gene051748 | MS.gene23983 | 0.818273 | 2.14E-52 | -1.69E-46 |
| MS.gene051756 | MS.gene23983 | 0.805755 | 1.15E-49 | -1.69E-46 |
| MS.gene051850 | MS.gene23983 | 0.810867 | 9.31E-51 | -1.69E-46 |
| MS.gene051903 | MS.gene23983 | 0.868982 | 4.35E-66 | -1.69E-46 |
| MS.gene053109 | MS.gene23983 | 0.805529 | 1.28E-49 | -1.69E-46 |
| MS.gene053952 | MS.gene23983 | 0.861738 | 8.30E-64 | -1.69E-46 |
| MS.gene055424 | MS.gene23983 | 0.809543 | 1.80E-50 | -1.69E-46 |
| MS.gene056601 | MS.gene23983 | 0.840284 | 9.54E-58 | -1.69E-46 |
| MS.gene056631 | MS.gene23983 | 0.801629 | 8.23E-49 | -1.69E-46 |
| MS.gene057094 | MS.gene23983 | 0.851773 | 7.13E-61 | -1.69E-46 |
| MS.gene057234 | MS.gene23983 | 0.820254 | 7.56E-53 | -1.69E-46 |
| MS.gene06001 | MS.gene23983 | 0.851984 | 6.22E-61 | -1.69E-46 |
| MS.gene061145 | MS.gene23983 | 0.841064 | 5.96E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23983.t1 | MTR_7g098290 | 100.000 | 140 | 0 | 0 | 1 | 140 | 1 | 140 | 1.96e-99 | 281 |
| MS.gene23983.t1 | MTR_1g069585 | 100.000 | 140 | 0 | 0 | 1 | 140 | 1 | 140 | 1.96e-99 | 281 |
| MS.gene23983.t1 | MTR_7g098290 | 100.000 | 125 | 0 | 0 | 16 | 140 | 1 | 125 | 4.58e-88 | 252 |
| MS.gene23983.t1 | MTR_1g026090 | 80.000 | 135 | 12 | 1 | 2 | 136 | 42 | 161 | 7.11e-70 | 208 |
| MS.gene23983.t1 | MTR_5g054560 | 67.200 | 125 | 17 | 1 | 16 | 140 | 1 | 101 | 4.13e-52 | 160 |
| MS.gene23983.t1 | MTR_5g464620 | 87.755 | 49 | 6 | 0 | 14 | 62 | 16 | 64 | 1.08e-24 | 90.5 |
| MS.gene23983.t1 | MTR_2g070580 | 90.244 | 41 | 4 | 0 | 100 | 140 | 87 | 127 | 1.94e-20 | 81.3 |
| MS.gene23983.t1 | MTR_1779s0020 | 37.391 | 115 | 64 | 3 | 26 | 136 | 8 | 118 | 3.53e-16 | 70.1 |
| MS.gene23983.t1 | MTR_4g051390 | 37.391 | 115 | 64 | 3 | 26 | 136 | 8 | 118 | 6.24e-16 | 69.3 |
| MS.gene23983.t1 | MTR_2g087550 | 37.736 | 106 | 59 | 2 | 26 | 128 | 8 | 109 | 2.08e-14 | 67.4 |
| MS.gene23983.t1 | MTR_0002s0780 | 35.246 | 122 | 72 | 3 | 23 | 140 | 132 | 250 | 2.22e-14 | 67.8 |
| MS.gene23983.t1 | MTR_4g066540 | 72.500 | 40 | 7 | 1 | 100 | 139 | 54 | 89 | 7.52e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23983.t1 | AT3G04400 | 97.143 | 140 | 4 | 0 | 1 | 140 | 1 | 140 | 2.33e-97 | 276 |
| MS.gene23983.t1 | AT2G33370 | 97.143 | 140 | 4 | 0 | 1 | 140 | 1 | 140 | 2.33e-97 | 276 |
| MS.gene23983.t1 | AT1G04480 | 97.143 | 140 | 4 | 0 | 1 | 140 | 1 | 140 | 2.33e-97 | 276 |
| MS.gene23983.t1 | AT3G04400 | 98.400 | 125 | 2 | 0 | 16 | 140 | 1 | 125 | 1.18e-86 | 248 |
| MS.gene23983.t1 | AT2G33370 | 98.400 | 125 | 2 | 0 | 16 | 140 | 1 | 125 | 1.18e-86 | 248 |
| MS.gene23983.t1 | ATCG00780 | 34.783 | 115 | 67 | 3 | 26 | 136 | 8 | 118 | 1.22e-14 | 66.2 |
Find 48 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAAGGAATGTGCTGATCTT+TGG | 0.329007 | 1.3:+49028523 | MS.gene23983:CDS |
| ATACCTTTCATTTCTCCCTT+AGG | 0.394994 | 1.3:-49028174 | None:intergenic |
| TCAGCACATTCCTTAGCAAT+TGG | 0.405879 | 1.3:-49028516 | None:intergenic |
| GAACAAGTTCCGTATGTCAC+TGG | 0.413902 | 1.3:+49027051 | MS.gene23983:CDS |
| ACATGAAGACACCGTCCTTT+CGG | 0.413999 | 1.3:-49027285 | None:intergenic |
| CCTACCCTTGATTCCCTTCA+CGG | 0.419579 | 1.3:-49027140 | None:intergenic |
| AAAACCTTCTTCCTGAGATC+AGG | 0.427356 | 1.3:-49027226 | None:intergenic |
| CGTCTTCCTTCAGCTTGTGC+TGG | 0.450748 | 1.3:+49027169 | MS.gene23983:CDS |
| TTAGGTCGTGGTGGTTCCGC+GGG | 0.471837 | 1.3:+49027028 | MS.gene23983:intron |
| TTCAGCTTGTGCTGGTGACA+TGG | 0.489849 | 1.3:+49027177 | MS.gene23983:CDS |
| CATCTCCGTGAAGGGAATCA+AGG | 0.491257 | 1.3:+49027135 | MS.gene23983:CDS |
| TTGGCAGCACTTGCAATCCT+AGG | 0.493302 | 1.3:-49028546 | None:intergenic |
| CAGTTCACCGTCGCTGCCAC+TGG | 0.502403 | 1.3:-49027079 | None:intergenic |
| CGCTGACGAACAATGACAGC+TGG | 0.509289 | 1.3:-49027250 | None:intergenic |
| AGAAGGGAAAGCCTGATCTC+AGG | 0.525390 | 1.3:+49027215 | MS.gene23983:CDS |
| TTGTGCTGGTGACATGGTGA+TGG | 0.531038 | 1.3:+49027183 | MS.gene23983:CDS |
| AATGTGCTGATCTTTGGCCT+AGG | 0.543147 | 1.3:+49028529 | MS.gene23983:CDS |
| ACACCGTCCTTTCGGCGCCA+TGG | 0.546165 | 1.3:-49027277 | None:intergenic |
| ATTGTAGGTTCTGCTATCAC+CGG | 0.549900 | 1.3:+49028492 | MS.gene23983:intron |
| AACAAGTTCCGTATGTCACT+GGG | 0.554811 | 1.3:+49027052 | MS.gene23983:CDS |
| GGTGATGGCTACTGTGAAGA+AGG | 0.561037 | 1.3:+49027198 | MS.gene23983:CDS |
| CAGAATCCACACTCATACAA+TGG | 0.562785 | 1.3:-49028571 | None:intergenic |
| ATTAGGTCGTGGTGGTTCCG+CGG | 0.570592 | 1.3:+49027027 | MS.gene23983:intron |
| CTGGTAGACCCAGTGACATA+CGG | 0.574663 | 1.3:-49027060 | None:intergenic |
| AAGCCATGGCGCCGAAAGGA+CGG | 0.575094 | 1.3:+49027274 | MS.gene23983:CDS |
| AAAGCCTGATCTCAGGAAGA+AGG | 0.579578 | 1.3:+49027222 | MS.gene23983:CDS |
| TGGTGTCATTGTGAATCCTA+AGG | 0.581900 | 1.3:+49028158 | MS.gene23983:CDS |
| GGGTCTACCAGTGGCAGCGA+CGG | 0.583652 | 1.3:+49027072 | MS.gene23983:CDS |
| CCACACTCATACAATGGCAT+TGG | 0.586391 | 1.3:-49028565 | None:intergenic |
| CTGTACATCATCTCCGTGAA+GGG | 0.589573 | 1.3:+49027127 | MS.gene23983:CDS |
| ATCTCCGTGAAGGGAATCAA+GGG | 0.592804 | 1.3:+49027136 | MS.gene23983:CDS |
| ACATTCCTTAGCAATTGGAC+CGG | 0.593816 | 1.3:-49028511 | None:intergenic |
| AATCCTAAGGGAGAAATGAA+AGG | 0.599885 | 1.3:+49028171 | MS.gene23983:CDS |
| TCTGTACATCATCTCCGTGA+AGG | 0.600106 | 1.3:+49027126 | MS.gene23983:CDS |
| TTGTTCGTCAGCGTAAGCCA+TGG | 0.601755 | 1.3:+49027260 | MS.gene23983:CDS |
| GCGTAAGCCATGGCGCCGAA+AGG | 0.602704 | 1.3:+49027270 | MS.gene23983:CDS |
| TATCACCGGTCCAATTGCTA+AGG | 0.605693 | 1.3:+49028506 | MS.gene23983:CDS |
| ATGTCACCAGCACAAGCTGA+AGG | 0.618315 | 1.3:-49027175 | None:intergenic |
| AACGCAACCATGTCGAAGAG+AGG | 0.636545 | 1.3:+49026932 | None:intergenic |
| GGTGTCTTCATGTACTTCGA+AGG | 0.643590 | 1.3:+49027295 | MS.gene23983:CDS |
| GTGAACTGTGCTGATAACAC+TGG | 0.644053 | 1.3:+49027094 | MS.gene23983:CDS |
| CCGTGAAGGGAATCAAGGGT+AGG | 0.651559 | 1.3:+49027140 | MS.gene23983:CDS |
| GGTGTCATTGTGAATCCTAA+GGG | 0.659767 | 1.3:+49028159 | MS.gene23983:CDS |
| TATGTCACTGGGTCTACCAG+TGG | 0.667978 | 1.3:+49027063 | MS.gene23983:CDS |
| GTGATGGCTACTGTGAAGAA+GGG | 0.669945 | 1.3:+49027199 | MS.gene23983:CDS |
| GTACATACCTCTCTTCGACA+TGG | 0.681454 | 1.3:-49026939 | None:intergenic |
| TAGGTCGTGGTGGTTCCGCG+GGG | 0.708397 | 1.3:+49027029 | MS.gene23983:intron |
| CATACGGAACTTGTTCCCCG+CGG | 0.790506 | 1.3:-49027044 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGAATCAATTAGACAAAA+CGG | - | chr1.3:49028429-49028448 | None:intergenic | 20.0% |
| !! | ATAATTGATTATGACATGTT+TGG | - | chr1.3:49027826-49027845 | None:intergenic | 20.0% |
| !! | ATATCAATTCAATCATTGTA+CGG | + | chr1.3:49028008-49028027 | MS.gene23983:intron | 20.0% |
| !! | TTTAACAGAAATCAATTTCA+AGG | - | chr1.3:49027566-49027585 | None:intergenic | 20.0% |
| !! | TTTCTATGTAGTAAATACTT+AGG | + | chr1.3:49028216-49028235 | MS.gene23983:intron | 20.0% |
| !!! | TACACTTTTAGAATCAAATT+TGG | + | chr1.3:49027845-49027864 | MS.gene23983:intron | 20.0% |
| !!! | TTTTAATTATGTCTTAATGC+CGG | + | chr1.3:49028092-49028111 | MS.gene23983:intron | 20.0% |
| ! | AATTGATATTAGCTAAAGAG+AGG | - | chr1.3:49027997-49028016 | None:intergenic | 25.0% |
| ! | CTCTTGTTAATATTTGGTAT+TGG | + | chr1.3:49028119-49028138 | MS.gene23983:intron | 25.0% |
| !! | AAATATTAACAAGAGTACAC+CGG | - | chr1.3:49028114-49028133 | None:intergenic | 25.0% |
| !! | AGTGAGTTGAACATAAAATT+TGG | + | chr1.3:49027727-49027746 | MS.gene23983:intron | 25.0% |
| !! | CTATTTATTGGAAGTTTTTG+AGG | + | chr1.3:49027888-49027907 | MS.gene23983:intron | 25.0% |
| !! | GTGAGTTGAACATAAAATTT+GGG | + | chr1.3:49027728-49027747 | MS.gene23983:intron | 25.0% |
| AACATATTTGCATGAGCATT+AGG | - | chr1.3:49028243-49028262 | None:intergenic | 30.0% | |
| AATTAGACAAAACGGTACAA+AGG | - | chr1.3:49028421-49028440 | None:intergenic | 30.0% | |
| ACATTGTAACAATAGCCAAA+AGG | - | chr1.3:49028320-49028339 | None:intergenic | 30.0% | |
| AGAACAATTGAATCTGAGAA+AGG | - | chr1.3:49026978-49026997 | None:intergenic | 30.0% | |
| GGTAACTTGAAGCTATTTAT+TGG | + | chr1.3:49027876-49027895 | MS.gene23983:intron | 30.0% | |
| GGTGTACTCTTGTTAATATT+TGG | + | chr1.3:49028113-49028132 | MS.gene23983:intron | 30.0% | |
| TAGCAAACTAACAAAAAGAC+AGG | - | chr1.3:49028390-49028409 | None:intergenic | 30.0% | |
| ! | ATTGATTCATTGCTGGTATT+CGG | + | chr1.3:49028438-49028457 | MS.gene23983:intron | 30.0% |
| ! | TCTGATTGGTCATTCATATT+GGG | + | chr1.3:49027409-49027428 | MS.gene23983:intron | 30.0% |
| ! | TGTATCCCTATTTTCTGATT+AGG | + | chr1.3:49027010-49027029 | MS.gene23983:intron | 30.0% |
| ! | TTCTGATTGGTCATTCATAT+TGG | + | chr1.3:49027408-49027427 | MS.gene23983:intron | 30.0% |
| ! | TTGTCTAATTGATTCATTGC+TGG | + | chr1.3:49028431-49028450 | MS.gene23983:intron | 30.0% |
| !! | TTTTGGCTATTGTTACAATG+TGG | + | chr1.3:49028319-49028338 | MS.gene23983:intron | 30.0% |
| !!! | TACATTTTAGAATCAAGAGC+AGG | + | chr1.3:49027759-49027778 | MS.gene23983:intron | 30.0% |
| AATCAAAACACCACACACAT+AGG | - | chr1.3:49027347-49027366 | None:intergenic | 35.0% | |
| AATCCTAAGGGAGAAATGAA+AGG | + | chr1.3:49028171-49028190 | MS.gene23983:CDS | 35.0% | |
| AGAATCAAATTTGGTTGCTC+TGG | + | chr1.3:49027854-49027873 | MS.gene23983:intron | 35.0% | |
| ATACCTTTCATTTCTCCCTT+AGG | - | chr1.3:49028177-49028196 | None:intergenic | 35.0% | |
| CAAACTAACAAAAAGACAGG+TGG | - | chr1.3:49028387-49028406 | None:intergenic | 35.0% | |
| CACGACCTAATCAGAAAATA+GGG | - | chr1.3:49027018-49027037 | None:intergenic | 35.0% | |
| GAATCAAATTTGGTTGCTCT+GGG | + | chr1.3:49027855-49027874 | MS.gene23983:intron | 35.0% | |
| TATGTCATGCTGTTCATTGT+AGG | + | chr1.3:49028477-49028496 | MS.gene23983:intron | 35.0% | |
| ! | CTGATTGGTCATTCATATTG+GGG | + | chr1.3:49027410-49027429 | MS.gene23983:intron | 35.0% |
| !! | TTGGTTTTTGCAGATAATGC+TGG | + | chr1.3:49028138-49028157 | MS.gene23983:intron | 35.0% |
| AAAACCTTCTTCCTGAGATC+AGG | - | chr1.3:49027229-49027248 | None:intergenic | 40.0% | |
| AACAAGTTCCGTATGTCACT+GGG | + | chr1.3:49027052-49027071 | MS.gene23983:CDS | 40.0% | |
| ACATTCCTTAGCAATTGGAC+CGG | - | chr1.3:49028514-49028533 | None:intergenic | 40.0% | |
| ATTGTAGGTTCTGCTATCAC+CGG | + | chr1.3:49028492-49028511 | MS.gene23983:intron | 40.0% | |
| CCACGACCTAATCAGAAAAT+AGG | - | chr1.3:49027019-49027038 | None:intergenic | 40.0% | |
| GATTGTTGTACCTATGTGTG+TGG | + | chr1.3:49027334-49027353 | MS.gene23983:intron | 40.0% | |
| TATGACATGTTTGGTTGCTC+TGG | - | chr1.3:49027817-49027836 | None:intergenic | 40.0% | |
| TCAGCACATTCCTTAGCAAT+TGG | - | chr1.3:49028519-49028538 | None:intergenic | 40.0% | |
| TGAGTGATCTGTGTTCTGAT+TGG | + | chr1.3:49027395-49027414 | MS.gene23983:intron | 40.0% | |
| ! | ATTTTCTGATTAGGTCGTGG+TGG | + | chr1.3:49027019-49027038 | MS.gene23983:intron | 40.0% |
| ! | CACATCATGCTGTTTAAGAC+TGG | - | chr1.3:49027457-49027476 | None:intergenic | 40.0% |
| ! | CCTATTTTCTGATTAGGTCG+TGG | + | chr1.3:49027016-49027035 | MS.gene23983:intron | 40.0% |
| ! | CTAAGGAATGTGCTGATCTT+TGG | + | chr1.3:49028523-49028542 | MS.gene23983:CDS | 40.0% |
| !! | GGTGTCATTGTGAATCCTAA+GGG | + | chr1.3:49028159-49028178 | MS.gene23983:CDS | 40.0% |
| !! | TGGTGTCATTGTGAATCCTA+AGG | + | chr1.3:49028158-49028177 | MS.gene23983:CDS | 40.0% |
| AAAGCCTGATCTCAGGAAGA+AGG | + | chr1.3:49027222-49027241 | MS.gene23983:CDS | 45.0% | |
| AACGAGATTTACCAGCAGAC+AGG | - | chr1.3:49027501-49027520 | None:intergenic | 45.0% | |
| ACATGAAGACACCGTCCTTT+CGG | - | chr1.3:49027288-49027307 | None:intergenic | 45.0% | |
| ATCTCCGTGAAGGGAATCAA+GGG | + | chr1.3:49027136-49027155 | MS.gene23983:CDS | 45.0% | |
| CTGTACATCATCTCCGTGAA+GGG | + | chr1.3:49027127-49027146 | MS.gene23983:CDS | 45.0% | |
| GAACAAGTTCCGTATGTCAC+TGG | + | chr1.3:49027051-49027070 | MS.gene23983:CDS | 45.0% | |
| GGTGTCTTCATGTACTTCGA+AGG | + | chr1.3:49027295-49027314 | MS.gene23983:CDS | 45.0% | |
| GTGATGGCTACTGTGAAGAA+GGG | + | chr1.3:49027199-49027218 | MS.gene23983:CDS | 45.0% | |
| TATCACCGGTCCAATTGCTA+AGG | + | chr1.3:49028506-49028525 | MS.gene23983:CDS | 45.0% | |
| TCTGTACATCATCTCCGTGA+AGG | + | chr1.3:49027126-49027145 | MS.gene23983:CDS | 45.0% | |
| ! | AATGTGCTGATCTTTGGCCT+AGG | + | chr1.3:49028529-49028548 | MS.gene23983:CDS | 45.0% |
| ! | ACACTTGCTTCAGTGCCTTT+TGG | + | chr1.3:49028302-49028321 | MS.gene23983:intron | 45.0% |
| ! | GTGAACTGTGCTGATAACAC+TGG | + | chr1.3:49027094-49027113 | MS.gene23983:CDS | 45.0% |
| AGAAGGGAAAGCCTGATCTC+AGG | + | chr1.3:49027215-49027234 | MS.gene23983:CDS | 50.0% | |
| ATGTCACCAGCACAAGCTGA+AGG | - | chr1.3:49027178-49027197 | None:intergenic | 50.0% | |
| CATCTCCGTGAAGGGAATCA+AGG | + | chr1.3:49027135-49027154 | MS.gene23983:CDS | 50.0% | |
| CCTACCCTTGATTCCCTTCA+CGG | - | chr1.3:49027143-49027162 | None:intergenic | 50.0% | |
| CTGGTAGACCCAGTGACATA+CGG | - | chr1.3:49027063-49027082 | None:intergenic | 50.0% | |
| TATGTCACTGGGTCTACCAG+TGG | + | chr1.3:49027063-49027082 | MS.gene23983:CDS | 50.0% | |
| TCATTGTGCTACCTGTCTGC+TGG | + | chr1.3:49027487-49027506 | MS.gene23983:intron | 50.0% | |
| TTGGCAGCACTTGCAATCCT+AGG | - | chr1.3:49028549-49028568 | None:intergenic | 50.0% | |
| TTGTTCGTCAGCGTAAGCCA+TGG | + | chr1.3:49027260-49027279 | MS.gene23983:CDS | 50.0% | |
| ! | GGTGATGGCTACTGTGAAGA+AGG | + | chr1.3:49027198-49027217 | MS.gene23983:CDS | 50.0% |
| ! | TTCAGCTTGTGCTGGTGACA+TGG | + | chr1.3:49027177-49027196 | MS.gene23983:CDS | 50.0% |
| ! | TTGTGCTGGTGACATGGTGA+TGG | + | chr1.3:49027183-49027202 | MS.gene23983:CDS | 50.0% |
| ATTAGGTCGTGGTGGTTCCG+CGG | + | chr1.3:49027027-49027046 | MS.gene23983:intron | 55.0% | |
| CCGTGAAGGGAATCAAGGGT+AGG | + | chr1.3:49027140-49027159 | MS.gene23983:CDS | 55.0% | |
| CGCTGACGAACAATGACAGC+TGG | - | chr1.3:49027253-49027272 | None:intergenic | 55.0% | |
| CGTCTTCCTTCAGCTTGTGC+TGG | + | chr1.3:49027169-49027188 | MS.gene23983:CDS | 55.0% | |
| ! | CATACGGAACTTGTTCCCCG+CGG | - | chr1.3:49027047-49027066 | None:intergenic | 55.0% |
| TTAGGTCGTGGTGGTTCCGC+GGG | + | chr1.3:49027028-49027047 | MS.gene23983:intron | 60.0% | |
| ! | AAGCCATGGCGCCGAAAGGA+CGG | + | chr1.3:49027274-49027293 | MS.gene23983:CDS | 60.0% |
| ACACCGTCCTTTCGGCGCCA+TGG | - | chr1.3:49027280-49027299 | None:intergenic | 65.0% | |
| CAGTTCACCGTCGCTGCCAC+TGG | - | chr1.3:49027082-49027101 | None:intergenic | 65.0% | |
| GGGTCTACCAGTGGCAGCGA+CGG | + | chr1.3:49027072-49027091 | MS.gene23983:CDS | 65.0% | |
| TAGGTCGTGGTGGTTCCGCG+GGG | + | chr1.3:49027029-49027048 | MS.gene23983:intron | 65.0% | |
| ! | GCGTAAGCCATGGCGCCGAA+AGG | + | chr1.3:49027270-49027289 | MS.gene23983:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 49026941 | 49028581 | 49026941 | ID=MS.gene23983 |
| chr1.3 | mRNA | 49026941 | 49028581 | 49026941 | ID=MS.gene23983.t1;Parent=MS.gene23983 |
| chr1.3 | exon | 49026941 | 49026953 | 49026941 | ID=MS.gene23983.t1.exon1;Parent=MS.gene23983.t1 |
| chr1.3 | CDS | 49026941 | 49026953 | 49026941 | ID=cds.MS.gene23983.t1;Parent=MS.gene23983.t1 |
| chr1.3 | exon | 49027032 | 49027316 | 49027032 | ID=MS.gene23983.t1.exon2;Parent=MS.gene23983.t1 |
| chr1.3 | CDS | 49027032 | 49027316 | 49027032 | ID=cds.MS.gene23983.t1;Parent=MS.gene23983.t1 |
| chr1.3 | exon | 49028151 | 49028192 | 49028151 | ID=MS.gene23983.t1.exon3;Parent=MS.gene23983.t1 |
| chr1.3 | CDS | 49028151 | 49028192 | 49028151 | ID=cds.MS.gene23983.t1;Parent=MS.gene23983.t1 |
| chr1.3 | exon | 49028499 | 49028581 | 49028499 | ID=MS.gene23983.t1.exon4;Parent=MS.gene23983.t1 |
| chr1.3 | CDS | 49028499 | 49028581 | 49028499 | ID=cds.MS.gene23983.t1;Parent=MS.gene23983.t1 |
| Gene Sequence |
| Protein sequence |
