Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049857.t1 | XP_013456039.1 | 98.5 | 341 | 5 | 0 | 1 | 341 | 1 | 341 | 4.60E-195 | 690.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049857.t1 | Q9LZG0 | 83.1 | 337 | 57 | 0 | 4 | 340 | 8 | 344 | 1.9e-168 | 593.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049857.t1 | A0A072UW36 | 98.5 | 341 | 5 | 0 | 1 | 341 | 1 | 341 | 3.3e-195 | 690.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049857 | MS.gene055424 | 0.809985 | 1.44E-50 | -1.69E-46 |
| MS.gene049857 | MS.gene06837 | 0.808841 | 2.54E-50 | -1.69E-46 |
| MS.gene049857 | MS.gene070222 | 0.80673 | 7.14E-50 | -1.69E-46 |
| MS.gene049857 | MS.gene09032 | 0.802496 | 5.46E-49 | -1.69E-46 |
| MS.gene049857 | MS.gene22160 | 0.800024 | 1.75E-48 | -1.69E-46 |
| MS.gene049857 | MS.gene23983 | 0.815459 | 9.14E-52 | -1.69E-46 |
| MS.gene049857 | MS.gene26426 | 0.815075 | 1.11E-51 | -1.69E-46 |
| MS.gene049857 | MS.gene27678 | 0.808829 | 2.55E-50 | -1.69E-46 |
| MS.gene049857 | MS.gene31196 | 0.814008 | 1.92E-51 | -1.69E-46 |
| MS.gene049857 | MS.gene33384 | 0.809829 | 1.56E-50 | -1.69E-46 |
| MS.gene049857 | MS.gene49777 | 0.803363 | 3.61E-49 | -1.69E-46 |
| MS.gene049857 | MS.gene51445 | 0.804287 | 2.32E-49 | -1.69E-46 |
| MS.gene049857 | MS.gene55282 | 0.806029 | 1.00E-49 | -1.69E-46 |
| MS.gene049857 | MS.gene66089 | 0.823542 | 1.31E-53 | -1.69E-46 |
| MS.gene049857 | MS.gene74854 | 0.810023 | 1.42E-50 | -1.69E-46 |
| MS.gene049857 | MS.gene91524 | 0.800504 | 1.40E-48 | -1.69E-46 |
| MS.gene049857 | MS.gene92572 | 0.833444 | 5.31E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene056386 | MS.gene049857 | PPI |
| MS.gene049857 | MS.gene003877 | PPI |
| MS.gene98726 | MS.gene049857 | PPI |
| MS.gene28335 | MS.gene049857 | PPI |
| MS.gene46881 | MS.gene049857 | PPI |
| MS.gene049857 | MS.gene052011 | PPI |
| MS.gene85276 | MS.gene049857 | PPI |
| MS.gene032177 | MS.gene049857 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049857.t1 | MTR_4g461070 | 98.534 | 341 | 5 | 0 | 1 | 341 | 1 | 341 | 0.0 | 701 |
| MS.gene049857.t1 | MTR_1g064060 | 95.894 | 341 | 14 | 0 | 1 | 341 | 1 | 341 | 0.0 | 684 |
| MS.gene049857.t1 | MTR_1g064060 | 94.649 | 299 | 16 | 0 | 1 | 299 | 1 | 299 | 0.0 | 591 |
| MS.gene049857.t1 | MTR_3g112040 | 25.382 | 327 | 212 | 14 | 12 | 326 | 27 | 333 | 2.46e-12 | 67.4 |
| MS.gene049857.t1 | MTR_3g081400 | 63.636 | 44 | 13 | 1 | 263 | 306 | 34 | 74 | 2.20e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049857.t1 | AT5G03300 | 83.086 | 337 | 57 | 0 | 4 | 340 | 8 | 344 | 0.0 | 602 |
| MS.gene049857.t1 | AT3G09820 | 83.432 | 338 | 56 | 0 | 3 | 340 | 6 | 343 | 0.0 | 599 |
| MS.gene049857.t1 | AT3G09820 | 84.694 | 294 | 45 | 0 | 47 | 340 | 8 | 301 | 0.0 | 528 |
| MS.gene049857.t1 | AT5G03300 | 83.505 | 291 | 48 | 0 | 50 | 340 | 1 | 291 | 0.0 | 523 |
| MS.gene049857.t1 | AT5G03300 | 83.505 | 291 | 48 | 0 | 50 | 340 | 1 | 291 | 0.0 | 523 |
| MS.gene049857.t1 | AT1G19600 | 25.602 | 332 | 218 | 13 | 14 | 336 | 23 | 334 | 5.98e-14 | 72.4 |
| MS.gene049857.t1 | AT4G27600 | 23.642 | 313 | 210 | 10 | 7 | 308 | 123 | 417 | 4.48e-11 | 64.3 |
Find 96 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGTATATGGACTATGTATT+TGG | 0.205120 | 4.4:-43993689 | MS.gene049857:CDS |
| ACCAGCTTGTTTAGAGTTCT+TGG | 0.208302 | 4.4:+43994533 | None:intergenic |
| TCTTTAGGTAATAGAATTAC+AGG | 0.256176 | 4.4:+43993395 | None:intergenic |
| AATTCTGGGATTCAGGTATA+TGG | 0.260397 | 4.4:-43993702 | MS.gene049857:intron |
| TTCCTGAAGCCTTTGGCAAC+TGG | 0.264531 | 4.4:+43993495 | None:intergenic |
| GCCAAATACTTCTATATTGC+TGG | 0.275413 | 4.4:-43994009 | MS.gene049857:CDS |
| CTTGAAGAACTCACAGATAA+AGG | 0.280480 | 4.4:+43993815 | None:intergenic |
| AATGTACTCCACGTTATATT+TGG | 0.281042 | 4.4:+43994858 | None:intergenic |
| TCCAGCAATATAGAAGTATT+TGG | 0.289903 | 4.4:+43994008 | None:intergenic |
| TATTGAAAATCAGGCTTCTC+TGG | 0.291194 | 4.4:+43993136 | None:intergenic |
| GTATCAACTAGTTTCTCTTT+AGG | 0.308599 | 4.4:+43993380 | None:intergenic |
| ATTTGAAGAAACCCGAAAAC+TGG | 0.322325 | 4.4:-43994146 | MS.gene049857:CDS |
| GCTTTGGAAGGTGTTCTTCT+TGG | 0.324177 | 4.4:-43995751 | MS.gene049857:CDS |
| AGAATCACTTATTGAAAATC+AGG | 0.327042 | 4.4:+43993127 | None:intergenic |
| AGCAACTAATTGAATGGATT+CGG | 0.333100 | 4.4:+43993966 | None:intergenic |
| GGAAGGTGTTCTTCTTGGTA+TGG | 0.348012 | 4.4:-43995746 | MS.gene049857:CDS |
| GCAACTAATTGAATGGATTC+GGG | 0.354886 | 4.4:+43993967 | None:intergenic |
| TGGAGGATTTCTTTCACAAT+TGG | 0.357365 | 4.4:-43993242 | MS.gene049857:CDS |
| GCTCTCACACATTCTTCAAT+AGG | 0.364927 | 4.4:+43993208 | None:intergenic |
| TCCCAGTTGCCAAAGGCTTC+AGG | 0.368251 | 4.4:-43993497 | MS.gene049857:CDS |
| CGAGAATAGCATTGTTCAAC+TGG | 0.377377 | 4.4:+43995551 | None:intergenic |
| CTTTATCTGTGAGTTCTTCA+AGG | 0.379104 | 4.4:-43993814 | MS.gene049857:CDS |
| TCTCGCATCAACAATGGCTT+TGG | 0.379448 | 4.4:-43995767 | None:intergenic |
| ACTTGTGCTGTTTGTGTGGT+TGG | 0.384223 | 4.4:-43994360 | MS.gene049857:CDS |
| TGCATTGGGAAGGACAAGTT+TGG | 0.384984 | 4.4:-43994567 | MS.gene049857:CDS |
| TTGTGTGTTCCTGAAGCCTT+TGG | 0.395870 | 4.4:+43993488 | None:intergenic |
| AAACCCGAAAACTGGGCATT+AGG | 0.395935 | 4.4:-43994138 | MS.gene049857:intron |
| CAACTAGGTTCATTATTATG+AGG | 0.405870 | 4.4:-43994403 | MS.gene049857:intron |
| TCCTGAAGCCTTTGGCAACT+GGG | 0.416507 | 4.4:+43993496 | None:intergenic |
| AGTGGTTGCTTCAAGTTCCC+AGG | 0.430191 | 4.4:-43994608 | MS.gene049857:CDS |
| ACCGATGTAACTAGTGGCCC+TGG | 0.436467 | 4.4:+43994590 | None:intergenic |
| CTAGTTACATCGGTTGCATT+GGG | 0.448977 | 4.4:-43994581 | MS.gene049857:CDS |
| TTTGTAGGAGATGCCTTTGT+TGG | 0.450937 | 4.4:-43993262 | MS.gene049857:intron |
| ACTAGTTACATCGGTTGCAT+TGG | 0.451047 | 4.4:-43994582 | MS.gene049857:CDS |
| GTAGGAGATGCCTTTGTTGG+AGG | 0.455368 | 4.4:-43993259 | MS.gene049857:intron |
| ATTCTTCAATAGGTTTCTCC+TGG | 0.464884 | 4.4:+43993218 | None:intergenic |
| GTGCTACTCAGAATTCAATC+AGG | 0.465309 | 4.4:-43994737 | MS.gene049857:CDS |
| GAAGGTGTTCTTCTTGGTAT+GGG | 0.471521 | 4.4:-43995745 | MS.gene049857:CDS |
| GAATTCAATCAGGGTTGCTC+AGG | 0.472160 | 4.4:-43994727 | MS.gene049857:intron |
| TTTGTGTGGTTGGTGGTGAA+AGG | 0.475394 | 4.4:-43994350 | MS.gene049857:intron |
| TAGGGCAATACCTGCTCCAT+TGG | 0.477788 | 4.4:+43993358 | None:intergenic |
| ATGTTCAGCAACTAATTGAA+TGG | 0.478120 | 4.4:+43993960 | None:intergenic |
| TTGAAGAACTCACAGATAAA+GGG | 0.482558 | 4.4:+43993816 | None:intergenic |
| TTGACCAGACTGATAATGTC+GGG | 0.490681 | 4.4:-43993538 | MS.gene049857:intron |
| CTTCTCTGGGTAAGTGCAGC+CGG | 0.491076 | 4.4:+43993150 | None:intergenic |
| ATTGAAAATCAGGCTTCTCT+GGG | 0.503018 | 4.4:+43993137 | None:intergenic |
| CCCGTGTGTGTTGCTCAAGA+TGG | 0.504240 | 4.4:-43993434 | MS.gene049857:CDS |
| ATTTCTTTCACAATTGGTCC+AGG | 0.505204 | 4.4:-43993236 | MS.gene049857:CDS |
| GCAGTTTGCAGCTGATAAGT+TGG | 0.505373 | 4.4:+43994182 | None:intergenic |
| AATGTTATCATTCAAAGGTC+CGG | 0.511083 | 4.4:-43993169 | MS.gene049857:CDS |
| TATAACGTGGAGTACATTGC+TGG | 0.514705 | 4.4:-43994853 | MS.gene049857:CDS |
| ATCAGCACCCTGTGTGATAA+CGG | 0.517329 | 4.4:+43993457 | None:intergenic |
| TGTGCTGTTTGTGTGGTTGG+TGG | 0.518619 | 4.4:-43994357 | MS.gene049857:CDS |
| TACGGAAGAGCTTTCTCCTG+TGG | 0.523507 | 4.4:+43993789 | None:intergenic |
| AGGCTTCAGGAACACACAAA+AGG | 0.529385 | 4.4:-43993484 | MS.gene049857:CDS |
| CTAGTTGATACCAATGGAGC+AGG | 0.539667 | 4.4:-43993368 | MS.gene049857:intron |
| GAGAAACTAGTTGATACCAA+TGG | 0.547784 | 4.4:-43993374 | MS.gene049857:CDS |
| TGAGTTCTTCAAGGATCCAC+AGG | 0.550028 | 4.4:-43993805 | MS.gene049857:CDS |
| CAGCAAATGTTATCATTCAA+AGG | 0.551386 | 4.4:-43993174 | MS.gene049857:CDS |
| GACAGCAGAGATGTCGAGAA+GGG | 0.552559 | 4.4:+43995717 | None:intergenic |
| ATTGAAGAATGTGTGAGAGC+TGG | 0.554569 | 4.4:-43993205 | MS.gene049857:CDS |
| CCGTGTGTGTTGCTCAAGAT+GGG | 0.565237 | 4.4:-43993433 | MS.gene049857:CDS |
| CCCATCTTGAGCAACACACA+CGG | 0.565436 | 4.4:+43993433 | None:intergenic |
| TTTGAAGAAACCCGAAAACT+GGG | 0.568142 | 4.4:-43994145 | MS.gene049857:CDS |
| CGACAGCAGAGATGTCGAGA+AGG | 0.569277 | 4.4:+43995716 | None:intergenic |
| TTGAAGAATGTGTGAGAGCT+GGG | 0.569874 | 4.4:-43993204 | MS.gene049857:CDS |
| ACCAAGAACTCTAAACAAGC+TGG | 0.574572 | 4.4:-43994534 | MS.gene049857:CDS |
| AGGAACTTGTGCTGTTTGTG+TGG | 0.578061 | 4.4:-43994364 | MS.gene049857:CDS |
| TGAAAGAAATCCTCCAACAA+AGG | 0.578951 | 4.4:+43993249 | None:intergenic |
| CACAGATAAAGGGTGCAGAA+AGG | 0.579545 | 4.4:+43993826 | None:intergenic |
| CCCAGGGCCACTAGTTACAT+CGG | 0.592325 | 4.4:-43994591 | MS.gene049857:CDS |
| GTGGTTGCTTCAAGTTCCCA+GGG | 0.593874 | 4.4:-43994607 | MS.gene049857:CDS |
| TTACATCGGTTGCATTGGGA+AGG | 0.601422 | 4.4:-43994577 | MS.gene049857:CDS |
| CTTTAGGTAATAGAATTACA+GGG | 0.605211 | 4.4:+43993396 | None:intergenic |
| GCATCAACAATGGCTTTGGA+AGG | 0.614210 | 4.4:-43995763 | None:intergenic |
| CCGATGTAACTAGTGGCCCT+GGG | 0.618978 | 4.4:+43994591 | None:intergenic |
| CAAGATATCCCAGTTGCCAA+AGG | 0.620599 | 4.4:-43993504 | MS.gene049857:CDS |
| AAGGATTACCGTTATCACAC+AGG | 0.620728 | 4.4:-43993465 | MS.gene049857:CDS |
| ACAAACAGCACAAGTTCCTG+TGG | 0.622784 | 4.4:+43994368 | None:intergenic |
| ATTGACCAGACTGATAATGT+CGG | 0.623669 | 4.4:-43993539 | MS.gene049857:intron |
| AACTAATTGAATGGATTCGG+GGG | 0.625445 | 4.4:+43993969 | None:intergenic |
| CCATCTTGAGCAACACACAC+GGG | 0.628074 | 4.4:+43993434 | None:intergenic |
| TGCTACTCAGAATTCAATCA+GGG | 0.630239 | 4.4:-43994736 | MS.gene049857:CDS |
| TGGGAAGGACAAGTTTGGCG+AGG | 0.639413 | 4.4:-43994562 | MS.gene049857:CDS |
| ACAGCAGAGATGTCGAGAAG+GGG | 0.640848 | 4.4:+43995718 | None:intergenic |
| AATGCAACCGATGTAACTAG+TGG | 0.642163 | 4.4:+43994584 | None:intergenic |
| CAACTAATTGAATGGATTCG+GGG | 0.644425 | 4.4:+43993968 | None:intergenic |
| ACATGCAGCTGCAAATAACA+AGG | 0.645685 | 4.4:-43993941 | MS.gene049857:intron |
| GAGGACGAGAATACACCCAC+AGG | 0.657210 | 4.4:-43994384 | MS.gene049857:CDS |
| TTCGAAAGTTCATGGCTGGG+AGG | 0.661884 | 4.4:-43993642 | MS.gene049857:intron |
| AGGATTACCGTTATCACACA+GGG | 0.685783 | 4.4:-43993464 | MS.gene049857:CDS |
| TGACCAGACTGATAATGTCG+GGG | 0.690826 | 4.4:-43993537 | MS.gene049857:intron |
| AACGTGGAGTACATTGCTGG+AGG | 0.692110 | 4.4:-43994850 | MS.gene049857:intron |
| CAAACAGCACAAGTTCCTGT+GGG | 0.694913 | 4.4:+43994369 | None:intergenic |
| AATGACTGCCAAATATAACG+TGG | 0.704099 | 4.4:-43994866 | MS.gene049857:CDS |
| TTGGAAATGAGACTGAAGCA+CGG | 0.730296 | 4.4:-43993670 | MS.gene049857:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAAAATAAATGATTTTC+AGG | + | chr4.4:43994598-43994617 | None:intergenic | 10.0% |
| !!! | AAAAATGTTACTTTTTTTCT+TGG | + | chr4.4:43994101-43994120 | None:intergenic | 15.0% |
| !!! | ATTTTGATGTAATTATTTGT+TGG | - | chr4.4:43993696-43993715 | MS.gene049857:intron | 15.0% |
| !!! | GTTTATATTTTTGGTTATTT+AGG | - | chr4.4:43993453-43993472 | MS.gene049857:CDS | 15.0% |
| !!! | TTTTTAATCAATAGTTGAAA+AGG | - | chr4.4:43994858-43994877 | MS.gene049857:CDS | 15.0% |
| !!! | TTTTTCTTATTGATCTTTAA+GGG | - | chr4.4:43995160-43995179 | MS.gene049857:intron | 15.0% |
| !! | AACTTATTCATTTAACAACT+AGG | - | chr4.4:43994471-43994490 | MS.gene049857:intron | 20.0% |
| !! | ATTACATCAAAATTAAATCC+TGG | + | chr4.4:43993689-43993708 | None:intergenic | 20.0% |
| !! | CATAAAATGTAAAACCAAAA+CGG | + | chr4.4:43995304-43995323 | None:intergenic | 20.0% |
| !! | TAAAAAAAAATCAGATCTCA+TGG | - | chr4.4:43993281-43993300 | MS.gene049857:intron | 20.0% |
| !! | TCACTTTCTCAAAAATTTAT+CGG | + | chr4.4:43993821-43993840 | None:intergenic | 20.0% |
| !!! | ACATGCTAAGTTTATATTTT+TGG | - | chr4.4:43993444-43993463 | MS.gene049857:CDS | 20.0% |
| !!! | GTTTTTCTTATTGATCTTTA+AGG | - | chr4.4:43995159-43995178 | MS.gene049857:intron | 20.0% |
| !!! | TGTGCTACAATATATATTTT+AGG | - | chr4.4:43993611-43993630 | MS.gene049857:intron | 20.0% |
| !!! | TTATGATTTTTCTTTTTTGC+AGG | - | chr4.4:43994130-43994149 | MS.gene049857:intron | 20.0% |
| !!! | TTCTTTTGTTTTGTTTTTGT+AGG | - | chr4.4:43995612-43995631 | MS.gene049857:intron | 20.0% |
| !!! | TTTTATGTAATAACTCATCT+TGG | - | chr4.4:43995317-43995336 | MS.gene049857:intron | 20.0% |
| ! | ACTGAAAAATCTTTAAGTGA+TGG | + | chr4.4:43993734-43993753 | None:intergenic | 25.0% |
| ! | ATCAATTACTTCTAGTAGAA+AGG | + | chr4.4:43995002-43995021 | None:intergenic | 25.0% |
| ! | ATTCAACTTCAAAAAGCAAT+AGG | + | chr4.4:43995553-43995572 | None:intergenic | 25.0% |
| ! | CTTTAGGTAATAGAATTACA+GGG | + | chr4.4:43995496-43995515 | None:intergenic | 25.0% |
| ! | GAAACGCATTAATCAATAAA+TGG | + | chr4.4:43994079-43994098 | None:intergenic | 25.0% |
| ! | GAATAAGTTAATTTCAGAAG+TGG | + | chr4.4:43994460-43994479 | None:intergenic | 25.0% |
| ! | TATACACCGCAATAATAAAA+AGG | + | chr4.4:43993242-43993261 | None:intergenic | 25.0% |
| ! | TCATCAAAATGACTAACATT+TGG | - | chr4.4:43994822-43994841 | MS.gene049857:intron | 25.0% |
| ! | TCTTTAGGTAATAGAATTAC+AGG | + | chr4.4:43995497-43995516 | None:intergenic | 25.0% |
| ! | TGATGATTCAGAAACTTTAA+TGG | + | chr4.4:43994808-43994827 | None:intergenic | 25.0% |
| ! | TTCAACTTCAAAAAGCAATA+GGG | + | chr4.4:43995552-43995571 | None:intergenic | 25.0% |
| ! | TTTATTATTGCGGTGTATAT+TGG | - | chr4.4:43993243-43993262 | MS.gene049857:CDS | 25.0% |
| ! | TTTGTATTTGCTTCTTATAG+TGG | - | chr4.4:43994263-43994282 | MS.gene049857:intron | 25.0% |
| !! | CTTCTTCCTTTTTATTATTG+CGG | - | chr4.4:43993233-43993252 | MS.gene049857:CDS | 25.0% |
| !! | TCAGTTTAGCTTATTTACTT+TGG | - | chr4.4:43993641-43993660 | MS.gene049857:intron | 25.0% |
| !!! | ATTTTGGTAGTTTTAGAGTT+TGG | - | chr4.4:43993563-43993582 | MS.gene049857:intron | 25.0% |
| !!! | TTAAGTGATGGATAGAAAAA+TGG | + | chr4.4:43993722-43993741 | None:intergenic | 25.0% |
| !!! | TTGCTTTTTGAAGTTGAATA+TGG | - | chr4.4:43995554-43995573 | MS.gene049857:CDS | 25.0% |
| AAAAAGATCCTGAATCAAGA+AGG | + | chr4.4:43994779-43994798 | None:intergenic | 30.0% | |
| AATGTACTCCACGTTATATT+TGG | + | chr4.4:43994034-43994053 | None:intergenic | 30.0% | |
| AATGTTATCATTCAAAGGTC+CGG | - | chr4.4:43995720-43995739 | MS.gene049857:CDS | 30.0% | |
| ATGTTCAGCAACTAATTGAA+TGG | + | chr4.4:43994932-43994951 | None:intergenic | 30.0% | |
| CAACTAGGTTCATTATTATG+AGG | - | chr4.4:43994486-43994505 | MS.gene049857:intron | 30.0% | |
| CAGCAAATGTTATCATTCAA+AGG | - | chr4.4:43995715-43995734 | MS.gene049857:CDS | 30.0% | |
| GTATGCTAAATTCTTTGTGA+TGG | - | chr4.4:43993926-43993945 | MS.gene049857:intron | 30.0% | |
| TATCATTCCACAATCATTTC+AGG | - | chr4.4:43993992-43994011 | MS.gene049857:CDS | 30.0% | |
| TCTCAAAAATTTATCGGTGT+TGG | + | chr4.4:43993815-43993834 | None:intergenic | 30.0% | |
| TTACTTCTAGTAGAAAGGTT+AGG | + | chr4.4:43994997-43995016 | None:intergenic | 30.0% | |
| TTCCATGAAATTACAAGTGT+CGG | - | chr4.4:43993846-43993865 | MS.gene049857:intron | 30.0% | |
| TTGAAGAACTCACAGATAAA+GGG | + | chr4.4:43995076-43995095 | None:intergenic | 30.0% | |
| ! | AATTTCAGAAGTGGATTCTA+AGG | + | chr4.4:43994451-43994470 | None:intergenic | 30.0% |
| ! | AGCAACTAATTGAATGGATT+CGG | + | chr4.4:43994926-43994945 | None:intergenic | 30.0% |
| ! | AGGTATATGGACTATGTATT+TGG | - | chr4.4:43995200-43995219 | MS.gene049857:intron | 30.0% |
| ! | ATCTTTAAGGGTTTGAATTC+TGG | - | chr4.4:43995172-43995191 | MS.gene049857:intron | 30.0% |
| ! | GTATCAACTAGTTTCTCTTT+AGG | + | chr4.4:43995512-43995531 | None:intergenic | 30.0% |
| ! | TCTTTAAGGGTTTGAATTCT+GGG | - | chr4.4:43995173-43995192 | MS.gene049857:intron | 30.0% |
| ! | TTTCAGGCATTTAAAACACA+AGG | + | chr4.4:43994582-43994601 | None:intergenic | 30.0% |
| !! | GAAACCTTTTGATTGTATGT+AGG | - | chr4.4:43994674-43994693 | MS.gene049857:intron | 30.0% |
| !! | TCCAGCAATATAGAAGTATT+TGG | + | chr4.4:43994884-43994903 | None:intergenic | 30.0% |
| !!! | CGAGTTTAGCTTATTGATTT+TGG | - | chr4.4:43993547-43993566 | MS.gene049857:intron | 30.0% |
| AATGACTGCCAAATATAACG+TGG | - | chr4.4:43994023-43994042 | MS.gene049857:intron | 35.0% | |
| AATGTAAAACCAAAACGGCA+AGG | + | chr4.4:43995299-43995318 | None:intergenic | 35.0% | |
| ACATTATCAGTCTGGTCAAT+AGG | + | chr4.4:43995350-43995369 | None:intergenic | 35.0% | |
| AGATCGAAAAAGAAGCAAGA+AGG | + | chr4.4:43994412-43994431 | None:intergenic | 35.0% | |
| AGCTGAATCTTGAGTATTTG+TGG | - | chr4.4:43994223-43994242 | MS.gene049857:intron | 35.0% | |
| ATGTAAAACCAAAACGGCAA+GGG | + | chr4.4:43995298-43995317 | None:intergenic | 35.0% | |
| ATTAGGTACCTTCTTGATTC+AGG | - | chr4.4:43994768-43994787 | MS.gene049857:intron | 35.0% | |
| ATTCTTCAATAGGTTTCTCC+TGG | + | chr4.4:43995674-43995693 | None:intergenic | 35.0% | |
| ATTGAAAATCAGGCTTCTCT+GGG | + | chr4.4:43995755-43995774 | None:intergenic | 35.0% | |
| ATTTCTTTCACAATTGGTCC+AGG | - | chr4.4:43995653-43995672 | MS.gene049857:intron | 35.0% | |
| ATTTGAAGAAACCCGAAAAC+TGG | - | chr4.4:43994743-43994762 | MS.gene049857:intron | 35.0% | |
| CATCATACCTGAAATGATTG+TGG | + | chr4.4:43994002-43994021 | None:intergenic | 35.0% | |
| CATCATGAAAATCTGCACAA+GGG | + | chr4.4:43995041-43995060 | None:intergenic | 35.0% | |
| CTTGAAGAACTCACAGATAA+AGG | + | chr4.4:43995077-43995096 | None:intergenic | 35.0% | |
| CTTTATCTGTGAGTTCTTCA+AGG | - | chr4.4:43995075-43995094 | MS.gene049857:intron | 35.0% | |
| GCAAGAAGGCAAAATTACAA+AGG | + | chr4.4:43994398-43994417 | None:intergenic | 35.0% | |
| GCCAAATACTTCTATATTGC+TGG | - | chr4.4:43994880-43994899 | MS.gene049857:intron | 35.0% | |
| GGTTTCAACTTTCAAACAAC+TGG | + | chr4.4:43994660-43994679 | None:intergenic | 35.0% | |
| GTGACCTACATACAATCAAA+AGG | + | chr4.4:43994681-43994700 | None:intergenic | 35.0% | |
| TATTGAAAATCAGGCTTCTC+TGG | + | chr4.4:43995756-43995775 | None:intergenic | 35.0% | |
| TCATCATGAAAATCTGCACA+AGG | + | chr4.4:43995042-43995061 | None:intergenic | 35.0% | |
| TGAAAGAAATCCTCCAACAA+AGG | + | chr4.4:43995643-43995662 | None:intergenic | 35.0% | |
| TGCTACTCAGAATTCAATCA+GGG | - | chr4.4:43994153-43994172 | MS.gene049857:CDS | 35.0% | |
| TGGAGGATTTCTTTCACAAT+TGG | - | chr4.4:43995647-43995666 | MS.gene049857:intron | 35.0% | |
| TTGACGGTGAAGAATTCTTA+CGG | + | chr4.4:43995121-43995140 | None:intergenic | 35.0% | |
| TTTGAAGAAACCCGAAAACT+GGG | - | chr4.4:43994744-43994763 | MS.gene049857:intron | 35.0% | |
| ! | AACTAATTGAATGGATTCGG+GGG | + | chr4.4:43994923-43994942 | None:intergenic | 35.0% |
| ! | ATTGACCAGACTGATAATGT+CGG | - | chr4.4:43995350-43995369 | MS.gene049857:intron | 35.0% |
| ! | ATTTTCGAAAGTTCATGGCT+GGG | - | chr4.4:43995244-43995263 | MS.gene049857:intron | 35.0% |
| ! | CAACTAATTGAATGGATTCG+GGG | + | chr4.4:43994924-43994943 | None:intergenic | 35.0% |
| ! | GAGAAACTAGTTGATACCAA+TGG | - | chr4.4:43995515-43995534 | MS.gene049857:intron | 35.0% |
| ! | GCAACTAATTGAATGGATTC+GGG | + | chr4.4:43994925-43994944 | None:intergenic | 35.0% |
| !! | AATTCTGGGATTCAGGTATA+TGG | - | chr4.4:43995187-43995206 | MS.gene049857:intron | 35.0% |
| !! | ATGAAATTACAAGTGTCGGT+CGG | - | chr4.4:43993850-43993869 | MS.gene049857:intron | 35.0% |
| !!! | TGCTTGTTTTGGTTGTTTAC+AGG | - | chr4.4:43993307-43993326 | MS.gene049857:intron | 35.0% |
| !!! | TTCTTTTTCGATCTGCTACA+TGG | - | chr4.4:43994418-43994437 | MS.gene049857:intron | 35.0% |
| AAGGATTACCGTTATCACAC+AGG | - | chr4.4:43995424-43995443 | MS.gene049857:intron | 40.0% | |
| AATGCAACCGATGTAACTAG+TGG | + | chr4.4:43994308-43994327 | None:intergenic | 40.0% | |
| ACATGCAGCTGCAAATAACA+AGG | - | chr4.4:43994948-43994967 | MS.gene049857:intron | 40.0% | |
| ACCAAGAACTCTAAACAAGC+TGG | - | chr4.4:43994355-43994374 | MS.gene049857:CDS | 40.0% | |
| AGGATTACCGTTATCACACA+GGG | - | chr4.4:43995425-43995444 | MS.gene049857:intron | 40.0% | |
| ATTGAAGAATGTGTGAGAGC+TGG | - | chr4.4:43995684-43995703 | MS.gene049857:intron | 40.0% | |
| CGAGAATAGCATTGTTCAAC+TGG | + | chr4.4:43993341-43993360 | None:intergenic | 40.0% | |
| GACCGACACTTGTAATTTCA+TGG | + | chr4.4:43993851-43993870 | None:intergenic | 40.0% | |
| GCTCTCACACATTCTTCAAT+AGG | + | chr4.4:43995684-43995703 | None:intergenic | 40.0% | |
| GTATCTATGAAGCACAGACA+TGG | - | chr4.4:43993760-43993779 | MS.gene049857:intron | 40.0% | |
| TATAACGTGGAGTACATTGC+TGG | - | chr4.4:43994036-43994055 | MS.gene049857:intron | 40.0% | |
| TTGAAGAATGTGTGAGAGCT+GGG | - | chr4.4:43995685-43995704 | MS.gene049857:intron | 40.0% | |
| TTGGAAATGAGACTGAAGCA+CGG | - | chr4.4:43995219-43995238 | MS.gene049857:intron | 40.0% | |
| TTTGTAGGAGATGCCTTTGT+TGG | - | chr4.4:43995627-43995646 | MS.gene049857:intron | 40.0% | |
| ! | ACCAGCTTGTTTAGAGTTCT+TGG | + | chr4.4:43994359-43994378 | None:intergenic | 40.0% |
| ! | ACTAGTTACATCGGTTGCAT+TGG | - | chr4.4:43994307-43994326 | MS.gene049857:intron | 40.0% |
| ! | CATTTTCGAAAGTTCATGGC+TGG | - | chr4.4:43995243-43995262 | MS.gene049857:intron | 40.0% |
| ! | CGGACATTTTCGAAAGTTCA+TGG | - | chr4.4:43995239-43995258 | MS.gene049857:intron | 40.0% |
| ! | CTAGTTACATCGGTTGCATT+GGG | - | chr4.4:43994308-43994327 | MS.gene049857:intron | 40.0% |
| ! | GTGCTACTCAGAATTCAATC+AGG | - | chr4.4:43994152-43994171 | MS.gene049857:CDS | 40.0% |
| ! | TTGACCAGACTGATAATGTC+GGG | - | chr4.4:43995351-43995370 | MS.gene049857:intron | 40.0% |
| !! | GAAGGTGTTCTTCTTGGTAT+GGG | - | chr4.4:43993144-43993163 | MS.gene049857:CDS | 40.0% |
| !! | TCTCATGGTTCTGCTTGTTT+TGG | - | chr4.4:43993296-43993315 | MS.gene049857:intron | 40.0% |
| !! | TTGTGTCTTGTTTGCTATCC+AGG | - | chr4.4:43993668-43993687 | MS.gene049857:CDS | 40.0% |
| AAACCCGAAAACTGGGCATT+AGG | - | chr4.4:43994751-43994770 | MS.gene049857:intron | 45.0% | |
| ACAAACAGCACAAGTTCCTG+TGG | + | chr4.4:43994524-43994543 | None:intergenic | 45.0% | |
| AGGCTTCAGGAACACACAAA+AGG | - | chr4.4:43995405-43995424 | MS.gene049857:intron | 45.0% | |
| ATCAGCACCCTGTGTGATAA+CGG | + | chr4.4:43995435-43995454 | None:intergenic | 45.0% | |
| CAAACAGCACAAGTTCCTGT+GGG | + | chr4.4:43994523-43994542 | None:intergenic | 45.0% | |
| CAAGATATCCCAGTTGCCAA+AGG | - | chr4.4:43995385-43995404 | MS.gene049857:intron | 45.0% | |
| GAATTCAATCAGGGTTGCTC+AGG | - | chr4.4:43994162-43994181 | MS.gene049857:CDS | 45.0% | |
| GAGTGTCAATGTTAGTGTCG+TGG | + | chr4.4:43993793-43993812 | None:intergenic | 45.0% | |
| GCAGTTTGCAGCTGATAAGT+TGG | + | chr4.4:43994710-43994729 | None:intergenic | 45.0% | |
| TGAGTTCTTCAAGGATCCAC+AGG | - | chr4.4:43995084-43995103 | MS.gene049857:intron | 45.0% | |
| TGCATTGGGAAGGACAAGTT+TGG | - | chr4.4:43994322-43994341 | MS.gene049857:intron | 45.0% | |
| TTGTGTGTTCCTGAAGCCTT+TGG | + | chr4.4:43995404-43995423 | None:intergenic | 45.0% | |
| ! | CACAGATAAAGGGTGCAGAA+AGG | + | chr4.4:43995066-43995085 | None:intergenic | 45.0% |
| ! | CTAGTTGATACCAATGGAGC+AGG | - | chr4.4:43995521-43995540 | MS.gene049857:intron | 45.0% |
| ! | GCACTGACACTTCTGATTGA+AGG | + | chr4.4:43993895-43993914 | None:intergenic | 45.0% |
| ! | GGTACCTAATGCCCAGTTTT+CGG | + | chr4.4:43994758-43994777 | None:intergenic | 45.0% |
| ! | GTACCTAATGCCCAGTTTTC+GGG | + | chr4.4:43994757-43994776 | None:intergenic | 45.0% |
| ! | TGACCAGACTGATAATGTCG+GGG | - | chr4.4:43995352-43995371 | MS.gene049857:intron | 45.0% |
| ! | TTACATCGGTTGCATTGGGA+AGG | - | chr4.4:43994312-43994331 | MS.gene049857:intron | 45.0% |
| !! | ACTTGTGCTGTTTGTGTGGT+TGG | - | chr4.4:43994529-43994548 | MS.gene049857:CDS | 45.0% |
| !! | AGGAACTTGTGCTGTTTGTG+TGG | - | chr4.4:43994525-43994544 | MS.gene049857:intron | 45.0% |
| !! | CAGAAGTGGATTCTAAGGTC+TGG | + | chr4.4:43994446-43994465 | None:intergenic | 45.0% |
| !! | GCTTTGGAAGGTGTTCTTCT+TGG | - | chr4.4:43993138-43993157 | MS.gene049857:CDS | 45.0% |
| !! | GGAAGGTGTTCTTCTTGGTA+TGG | - | chr4.4:43993143-43993162 | MS.gene049857:CDS | 45.0% |
| !! | GGGTTTGAATTCTGGGATTC+AGG | - | chr4.4:43995180-43995199 | MS.gene049857:intron | 45.0% |
| !! | TTTGTGTGGTTGGTGGTGAA+AGG | - | chr4.4:43994539-43994558 | MS.gene049857:CDS | 45.0% |
| !! | AAATATTTATTTAAATTTGA+CGG | + | chr4.4:43995137-43995156 | None:intergenic | 5.0% |
| AACGTGGAGTACATTGCTGG+AGG | - | chr4.4:43994039-43994058 | MS.gene049857:intron | 50.0% | |
| ACAGCAGAGATGTCGAGAAG+GGG | + | chr4.4:43993174-43993193 | None:intergenic | 50.0% | |
| CCATCTTGAGCAACACACAC+GGG | + | chr4.4:43995458-43995477 | None:intergenic | 50.0% | |
| CCCATCTTGAGCAACACACA+CGG | + | chr4.4:43995459-43995478 | None:intergenic | 50.0% | |
| GACAGCAGAGATGTCGAGAA+GGG | + | chr4.4:43993175-43993194 | None:intergenic | 50.0% | |
| GTAGGAGATGCCTTTGTTGG+AGG | - | chr4.4:43995630-43995649 | MS.gene049857:intron | 50.0% | |
| GTCAATGTTAGTGTCGTGGC+CGG | + | chr4.4:43993789-43993808 | None:intergenic | 50.0% | |
| TACGGAAGAGCTTTCTCCTG+TGG | + | chr4.4:43995103-43995122 | None:intergenic | 50.0% | |
| TAGGGCAATACCTGCTCCAT+TGG | + | chr4.4:43995534-43995553 | None:intergenic | 50.0% | |
| TCCTGAAGCCTTTGGCAACT+GGG | + | chr4.4:43995396-43995415 | None:intergenic | 50.0% | |
| TCTCCCCGACATTATCAGTC+TGG | + | chr4.4:43995358-43995377 | None:intergenic | 50.0% | |
| TGAAGCACAGACATGGACAC+CGG | - | chr4.4:43993767-43993786 | MS.gene049857:intron | 50.0% | |
| TTCCTGAAGCCTTTGGCAAC+TGG | + | chr4.4:43995397-43995416 | None:intergenic | 50.0% | |
| TTCGAAAGTTCATGGCTGGG+AGG | - | chr4.4:43995247-43995266 | MS.gene049857:intron | 50.0% | |
| ! | AGTGGTTGCTTCAAGTTCCC+AGG | - | chr4.4:43994281-43994300 | MS.gene049857:intron | 50.0% |
| ! | CCGTGTGTGTTGCTCAAGAT+GGG | - | chr4.4:43995456-43995475 | MS.gene049857:intron | 50.0% |
| ! | GTGGTTGCTTCAAGTTCCCA+GGG | - | chr4.4:43994282-43994301 | MS.gene049857:intron | 50.0% |
| !! | GATCTGTACCCTTGCCGTTT+TGG | - | chr4.4:43995287-43995306 | MS.gene049857:intron | 50.0% |
| !! | TGTGCTGTTTGTGTGGTTGG+TGG | - | chr4.4:43994532-43994551 | MS.gene049857:CDS | 50.0% |
| !! | TTACAAGTGTCGGTCGGTGT+CGG | - | chr4.4:43993856-43993875 | MS.gene049857:intron | 50.0% |
| ACCGATGTAACTAGTGGCCC+TGG | + | chr4.4:43994302-43994321 | None:intergenic | 55.0% | |
| CCCAGGGCCACTAGTTACAT+CGG | - | chr4.4:43994298-43994317 | MS.gene049857:intron | 55.0% | |
| CCGATGTAACTAGTGGCCCT+GGG | + | chr4.4:43994301-43994320 | None:intergenic | 55.0% | |
| CGACAGCAGAGATGTCGAGA+AGG | + | chr4.4:43993176-43993195 | None:intergenic | 55.0% | |
| CTTCTCTGGGTAAGTGCAGC+CGG | + | chr4.4:43995742-43995761 | None:intergenic | 55.0% | |
| GAGGACGAGAATACACCCAC+AGG | - | chr4.4:43994505-43994524 | MS.gene049857:intron | 55.0% | |
| TCCCAGTTGCCAAAGGCTTC+AGG | - | chr4.4:43995392-43995411 | MS.gene049857:intron | 55.0% | |
| TGGATTCGGGGGATACAGTG+AGG | + | chr4.4:43994912-43994931 | None:intergenic | 55.0% | |
| TGGGAAGGACAAGTTTGGCG+AGG | - | chr4.4:43994327-43994346 | MS.gene049857:intron | 55.0% | |
| ! | CCCGTGTGTGTTGCTCAAGA+TGG | - | chr4.4:43995455-43995474 | MS.gene049857:intron | 55.0% |
| !! | GTCGGTCGGTGTCGGACACT+AGG | - | chr4.4:43993864-43993883 | MS.gene049857:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 43993135 | 43995776 | 43993135 | ID=MS.gene049857 |
| chr4.4 | mRNA | 43993135 | 43995776 | 43993135 | ID=MS.gene049857.t1;Parent=MS.gene049857 |
| chr4.4 | exon | 43995694 | 43995776 | 43995694 | ID=MS.gene049857.t1.exon1;Parent=MS.gene049857.t1 |
| chr4.4 | CDS | 43995694 | 43995776 | 43995694 | ID=cds.MS.gene049857.t1;Parent=MS.gene049857.t1 |
| chr4.4 | exon | 43995529 | 43995582 | 43995529 | ID=MS.gene049857.t1.exon2;Parent=MS.gene049857.t1 |
| chr4.4 | CDS | 43995529 | 43995582 | 43995529 | ID=cds.MS.gene049857.t1;Parent=MS.gene049857.t1 |
| chr4.4 | exon | 43994851 | 43994897 | 43994851 | ID=MS.gene049857.t1.exon3;Parent=MS.gene049857.t1 |
| chr4.4 | CDS | 43994851 | 43994897 | 43994851 | ID=cds.MS.gene049857.t1;Parent=MS.gene049857.t1 |
| chr4.4 | exon | 43994728 | 43994759 | 43994728 | ID=MS.gene049857.t1.exon4;Parent=MS.gene049857.t1 |
| chr4.4 | CDS | 43994728 | 43994759 | 43994728 | ID=cds.MS.gene049857.t1;Parent=MS.gene049857.t1 |
| chr4.4 | exon | 43994527 | 43994628 | 43994527 | ID=MS.gene049857.t1.exon5;Parent=MS.gene049857.t1 |
| chr4.4 | CDS | 43994527 | 43994628 | 43994527 | ID=cds.MS.gene049857.t1;Parent=MS.gene049857.t1 |
| chr4.4 | exon | 43994351 | 43994418 | 43994351 | ID=MS.gene049857.t1.exon6;Parent=MS.gene049857.t1 |
| chr4.4 | CDS | 43994351 | 43994418 | 43994351 | ID=cds.MS.gene049857.t1;Parent=MS.gene049857.t1 |
| chr4.4 | exon | 43994139 | 43994215 | 43994139 | ID=MS.gene049857.t1.exon7;Parent=MS.gene049857.t1 |
| chr4.4 | CDS | 43994139 | 43994215 | 43994139 | ID=cds.MS.gene049857.t1;Parent=MS.gene049857.t1 |
| chr4.4 | exon | 43993942 | 43994039 | 43993942 | ID=MS.gene049857.t1.exon8;Parent=MS.gene049857.t1 |
| chr4.4 | CDS | 43993942 | 43994039 | 43993942 | ID=cds.MS.gene049857.t1;Parent=MS.gene049857.t1 |
| chr4.4 | exon | 43993792 | 43993862 | 43993792 | ID=MS.gene049857.t1.exon9;Parent=MS.gene049857.t1 |
| chr4.4 | CDS | 43993792 | 43993862 | 43993792 | ID=cds.MS.gene049857.t1;Parent=MS.gene049857.t1 |
| chr4.4 | exon | 43993643 | 43993709 | 43993643 | ID=MS.gene049857.t1.exon10;Parent=MS.gene049857.t1 |
| chr4.4 | CDS | 43993643 | 43993709 | 43993643 | ID=cds.MS.gene049857.t1;Parent=MS.gene049857.t1 |
| chr4.4 | exon | 43993369 | 43993552 | 43993369 | ID=MS.gene049857.t1.exon11;Parent=MS.gene049857.t1 |
| chr4.4 | CDS | 43993369 | 43993552 | 43993369 | ID=cds.MS.gene049857.t1;Parent=MS.gene049857.t1 |
| chr4.4 | exon | 43993135 | 43993277 | 43993135 | ID=MS.gene049857.t1.exon12;Parent=MS.gene049857.t1 |
| chr4.4 | CDS | 43993135 | 43993277 | 43993135 | ID=cds.MS.gene049857.t1;Parent=MS.gene049857.t1 |
| Gene Sequence |
| Protein sequence |
