Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24258.t1 | XP_013466127.1 | 89.5 | 143 | 13 | 1 | 1 | 141 | 1 | 143 | 3.20E-65 | 257.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24258.t1 | I3SQ79 | 89.5 | 143 | 13 | 1 | 1 | 141 | 1 | 143 | 2.3e-65 | 257.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049232 | MS.gene24258 | -0.815704 | 8.07E-52 | -1.69E-46 |
MS.gene050082 | MS.gene24258 | 0.806462 | 8.13E-50 | -1.69E-46 |
MS.gene050216 | MS.gene24258 | -0.822943 | 1.81E-53 | -1.69E-46 |
MS.gene050323 | MS.gene24258 | -0.817863 | 2.64E-52 | -1.69E-46 |
MS.gene050868 | MS.gene24258 | -0.805218 | 1.48E-49 | -1.69E-46 |
MS.gene050871 | MS.gene24258 | -0.806415 | 8.32E-50 | -1.69E-46 |
MS.gene050904 | MS.gene24258 | -0.800507 | 1.40E-48 | -1.69E-46 |
MS.gene051268 | MS.gene24258 | -0.819426 | 1.17E-52 | -1.69E-46 |
MS.gene053562 | MS.gene24258 | 0.816138 | 6.45E-52 | -1.69E-46 |
MS.gene053633 | MS.gene24258 | -0.812391 | 4.34E-51 | -1.69E-46 |
MS.gene05494 | MS.gene24258 | -0.801824 | 7.50E-49 | -1.69E-46 |
MS.gene056046 | MS.gene24258 | -0.822753 | 2.00E-53 | -1.69E-46 |
MS.gene056387 | MS.gene24258 | -0.825733 | 3.99E-54 | -1.69E-46 |
MS.gene056504 | MS.gene24258 | -0.816089 | 6.62E-52 | -1.69E-46 |
MS.gene057173 | MS.gene24258 | 0.817205 | 3.72E-52 | -1.69E-46 |
MS.gene057926 | MS.gene24258 | -0.804135 | 2.50E-49 | -1.69E-46 |
MS.gene05913 | MS.gene24258 | -0.800824 | 1.20E-48 | -1.69E-46 |
MS.gene059367 | MS.gene24258 | -0.803323 | 3.68E-49 | -1.69E-46 |
MS.gene059865 | MS.gene24258 | -0.80667 | 7.35E-50 | -1.69E-46 |
MS.gene060703 | MS.gene24258 | -0.803262 | 3.79E-49 | -1.69E-46 |
MS.gene060778 | MS.gene24258 | -0.803069 | 4.16E-49 | -1.69E-46 |
MS.gene060823 | MS.gene24258 | 0.803391 | 3.56E-49 | -1.69E-46 |
MS.gene060982 | MS.gene24258 | -0.80904 | 2.30E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24258.t1 | MTR_1g022395 | 89.510 | 143 | 13 | 1 | 1 | 141 | 1 | 143 | 3.27e-91 | 261 |
MS.gene24258.t1 | MTR_3g111970 | 62.238 | 143 | 45 | 5 | 1 | 140 | 1 | 137 | 2.78e-54 | 167 |
MS.gene24258.t1 | MTR_3g111970 | 63.636 | 121 | 35 | 5 | 1 | 118 | 1 | 115 | 8.78e-45 | 142 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24258.t1 | AT1G19530 | 41.860 | 129 | 56 | 3 | 1 | 128 | 1 | 111 | 2.92e-18 | 75.5 |
MS.gene24258.t1 | AT1G19530 | 41.860 | 129 | 56 | 3 | 1 | 128 | 1 | 111 | 2.92e-18 | 75.5 |
Find 34 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGATGAAATTGATGCTTAT+TGG | 0.156482 | 1.1:-1891441 | MS.gene24258:CDS |
AATCATATGGTACCTGATTT+AGG | 0.175839 | 1.1:+1891619 | None:intergenic |
CTGAATAGTCTTTGACAAAT+TGG | 0.206876 | 1.1:+1891375 | None:intergenic |
GAACGTACTTGACACAAATT+TGG | 0.215908 | 1.1:-1890310 | MS.gene24258:CDS |
GTCAAGTACGTTCATATTAA+AGG | 0.224800 | 1.1:+1890320 | None:intergenic |
CTGTTTCAGCCATACTTAAA+AGG | 0.239435 | 1.1:-1891480 | MS.gene24258:intron |
CAATTTGTCAAAGACTATTC+AGG | 0.285232 | 1.1:-1891374 | MS.gene24258:intron |
GCAGGTGGACTAAGAGTAAC+TGG | 0.334701 | 1.1:-1890117 | MS.gene24258:intron |
TCAAGTACGTTCATATTAAA+GGG | 0.359264 | 1.1:+1890321 | None:intergenic |
TCTTCAATTGATCCTAAATC+AGG | 0.362673 | 1.1:-1891631 | MS.gene24258:intron |
TTGGATGCAGCTTCCATCAT+TGG | 0.363993 | 1.1:+1890076 | None:intergenic |
ACAGTTTCACGTTGCCAGTT+TGG | 0.389711 | 1.1:-1890041 | MS.gene24258:CDS |
GGGTTCTCTTATGGCAGGAT+GGG | 0.445491 | 1.1:-1891659 | MS.gene24258:CDS |
TCTGAATGAGCCACCAATGA+TGG | 0.467236 | 1.1:-1890089 | MS.gene24258:CDS |
CCATGCCCGTGGCCCACGTA+AGG | 0.471373 | 1.1:-1890347 | MS.gene24258:CDS |
GGGTCCCTTACGTGGGCCAC+GGG | 0.472849 | 1.1:+1890342 | None:intergenic |
GGGGTCCCTTACGTGGGCCA+CGG | 0.474803 | 1.1:+1890341 | None:intergenic |
CCTTACGTGGGCCACGGGCA+TGG | 0.492032 | 1.1:+1890347 | None:intergenic |
GGTTCTCTTATGGCAGGATG+GGG | 0.492223 | 1.1:-1891658 | MS.gene24258:CDS |
CAATCACTAACTTCATCTAC+GGG | 0.495529 | 1.1:+1890001 | None:intergenic |
GAAATCAAAGAAGAAGATAG+AGG | 0.499005 | 1.1:-1891419 | MS.gene24258:CDS |
GATGCAGCTTCCATCATTGG+TGG | 0.505474 | 1.1:+1890079 | None:intergenic |
TGGGTTCTCTTATGGCAGGA+TGG | 0.507870 | 1.1:-1891660 | MS.gene24258:CDS |
ACAAATTGGAAATTGCTGTA+AGG | 0.512610 | 1.1:+1891389 | None:intergenic |
TCAATCACTAACTTCATCTA+CGG | 0.513170 | 1.1:+1890000 | None:intergenic |
AAACTGTGCTGCATACTTGT+TGG | 0.515262 | 1.1:+1890057 | None:intergenic |
TATTAAAGGGGTCCCTTACG+TGG | 0.530982 | 1.1:+1890334 | None:intergenic |
AAAATGGGTTCTCTTATGGC+AGG | 0.548408 | 1.1:-1891664 | MS.gene24258:CDS |
CATGCCCGTGGCCCACGTAA+GGG | 0.568293 | 1.1:-1890346 | MS.gene24258:CDS |
GAAGTCAATGACCATGCCCG+TGG | 0.649977 | 1.1:-1890358 | MS.gene24258:CDS |
CAAGTACGTTCATATTAAAG+GGG | 0.651488 | 1.1:+1890322 | None:intergenic |
ATTAAAGGGGTCCCTTACGT+GGG | 0.678500 | 1.1:+1890335 | None:intergenic |
CAGGTGGACTAAGAGTAACT+GGG | 0.688506 | 1.1:-1890116 | MS.gene24258:CDS |
AATCACTAACTTCATCTACG+GGG | 0.796732 | 1.1:+1890002 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGAAATAAAAACATTAAAAT+TGG | + | chr1.1:1891204-1891223 | None:intergenic | 10.0% |
!!! | TACAAAATCATATATATTTT+CGG | + | chr1.1:1891062-1891081 | None:intergenic | 10.0% |
!!! | TTATTTTTTTTGGAAAAATT+TGG | + | chr1.1:1890390-1890409 | None:intergenic | 10.0% |
!! | AATAAATAAAATACATACGA+AGG | - | chr1.1:1890405-1890424 | MS.gene24258:intron | 15.0% |
!! | TATAGTATTATATATAGTGT+TGG | + | chr1.1:1890749-1890768 | None:intergenic | 15.0% |
!! | TTTACACACAATATTAAAAT+TGG | + | chr1.1:1891173-1891192 | None:intergenic | 15.0% |
!!! | AAATACATCTTTAATTTCAT+TGG | - | chr1.1:1890563-1890582 | MS.gene24258:intron | 15.0% |
!!! | TTAATGTTTTTATTTCATGA+TGG | - | chr1.1:1891207-1891226 | MS.gene24258:intron | 15.0% |
!! | CATATGCATAATTCATATAT+AGG | + | chr1.1:1891499-1891518 | None:intergenic | 20.0% |
!! | CTAAACATTAATTTCAAACT+TGG | + | chr1.1:1891247-1891266 | None:intergenic | 20.0% |
!! | CTATATATGAATTATGCATA+TGG | - | chr1.1:1891497-1891516 | MS.gene24258:intron | 20.0% |
!! | TAATCATATTAGAACTTAGA+CGG | - | chr1.1:1890129-1890148 | MS.gene24258:intron | 20.0% |
!!! | AAGTATCGTTATTAATCATA+TGG | + | chr1.1:1890058-1890077 | None:intergenic | 20.0% |
!!! | CAAGTTTGAAATTAATGTTT+AGG | - | chr1.1:1891245-1891264 | MS.gene24258:intron | 20.0% |
!!! | CTACTATTTTCTTTTTCTTT+TGG | + | chr1.1:1890717-1890736 | None:intergenic | 20.0% |
!!! | TATTAATTTAATTTGAGTGC+AGG | - | chr1.1:1891526-1891545 | MS.gene24258:intron | 20.0% |
! | AAGATGAAATTGATGCTTAT+TGG | - | chr1.1:1890220-1890239 | MS.gene24258:intron | 25.0% |
! | AATGAAATGTTAGAGAAAGT+TGG | - | chr1.1:1890439-1890458 | MS.gene24258:intron | 25.0% |
! | ACACTTGAAAAAATCAACAA+GGG | - | chr1.1:1890685-1890704 | MS.gene24258:intron | 25.0% |
! | ACTATAATAATTGGAAGAGT+AGG | + | chr1.1:1891411-1891430 | None:intergenic | 25.0% |
! | GAACCCTAATAATTGTTAAT+TGG | + | chr1.1:1890479-1890498 | None:intergenic | 25.0% |
! | GCTCCAATTAACAATTATTA+GGG | - | chr1.1:1890473-1890492 | MS.gene24258:intron | 25.0% |
! | TACACTTGAAAAAATCAACA+AGG | - | chr1.1:1890684-1890703 | MS.gene24258:intron | 25.0% |
! | TCAAGTACGTTCATATTAAA+GGG | + | chr1.1:1891343-1891362 | None:intergenic | 25.0% |
! | TGCTCCAATTAACAATTATT+AGG | - | chr1.1:1890472-1890491 | MS.gene24258:intron | 25.0% |
!! | AGTATTATATATAGTGTTGG+TGG | + | chr1.1:1890746-1890765 | None:intergenic | 25.0% |
!! | TAGTTTTCTAATATGCAAGA+AGG | + | chr1.1:1891001-1891020 | None:intergenic | 25.0% |
!! | TATATTTTCGGATTTCACTT+AGG | + | chr1.1:1891050-1891069 | None:intergenic | 25.0% |
!!! | GTATTATATATAGTGTTGGT+GGG | + | chr1.1:1890745-1890764 | None:intergenic | 25.0% |
!!! | TATTATATATAGTGTTGGTG+GGG | + | chr1.1:1890744-1890763 | None:intergenic | 25.0% |
!!! | TTTTTTGGAAAAATTTGGTG+TGG | + | chr1.1:1890385-1890404 | None:intergenic | 25.0% |
AACTTATCAACAAAAATGGC+TGG | - | chr1.1:1891377-1891396 | MS.gene24258:CDS | 30.0% | |
AATATGCAAGAAGGACTAAA+AGG | + | chr1.1:1890992-1891011 | None:intergenic | 30.0% | |
AATCATATGGTACCTGATTT+AGG | + | chr1.1:1890045-1890064 | None:intergenic | 30.0% | |
ACAAATTGGAAATTGCTGTA+AGG | + | chr1.1:1890275-1890294 | None:intergenic | 30.0% | |
ACGCGACAAACATTAATTAT+TGG | - | chr1.1:1890902-1890921 | MS.gene24258:intron | 30.0% | |
ACTCAAACACACAAGAAAAA+TGG | + | chr1.1:1890622-1890641 | None:intergenic | 30.0% | |
AGACGGTACTTATATTTATG+AGG | - | chr1.1:1890146-1890165 | MS.gene24258:intron | 30.0% | |
CAAGTACGTTCATATTAAAG+GGG | + | chr1.1:1891342-1891361 | None:intergenic | 30.0% | |
CAATTTGTCAAAGACTATTC+AGG | - | chr1.1:1890287-1890306 | MS.gene24258:CDS | 30.0% | |
CTGAATAGTCTTTGACAAAT+TGG | + | chr1.1:1890289-1890308 | None:intergenic | 30.0% | |
GAAATCAAAGAAGAAGATAG+AGG | - | chr1.1:1890242-1890261 | MS.gene24258:intron | 30.0% | |
GACGGTACTTATATTTATGA+GGG | - | chr1.1:1890147-1890166 | MS.gene24258:intron | 30.0% | |
GAGCAACTTATCAACAAAAA+TGG | - | chr1.1:1891373-1891392 | MS.gene24258:intron | 30.0% | |
GTCAAGTACGTTCATATTAA+AGG | + | chr1.1:1891344-1891363 | None:intergenic | 30.0% | |
TCAATCACTAACTTCATCTA+CGG | + | chr1.1:1891664-1891683 | None:intergenic | 30.0% | |
TCTTCAATTGATCCTAAATC+AGG | - | chr1.1:1890030-1890049 | MS.gene24258:CDS | 30.0% | |
TTACTCTAGTAGAAGAATAC+TGG | + | chr1.1:1890871-1890890 | None:intergenic | 30.0% | |
TTTCTTGTGTGTTTGAGTAA+TGG | - | chr1.1:1890624-1890643 | MS.gene24258:intron | 30.0% | |
! | GTGCTTAGTATTTTATGTTG+CGG | - | chr1.1:1890100-1890119 | MS.gene24258:CDS | 30.0% |
! | TTTCATCTTTTGTAAGTGAC+TGG | + | chr1.1:1890209-1890228 | None:intergenic | 30.0% |
!! | TAATTTAATTTGAGTGCAGG+TGG | - | chr1.1:1891529-1891548 | MS.gene24258:intron | 30.0% |
AATCACTAACTTCATCTACG+GGG | + | chr1.1:1891662-1891681 | None:intergenic | 35.0% | |
CAATCACTAACTTCATCTAC+GGG | + | chr1.1:1891663-1891682 | None:intergenic | 35.0% | |
CTGTTTCAGCCATACTTAAA+AGG | - | chr1.1:1890181-1890200 | MS.gene24258:intron | 35.0% | |
GAACGTACTTGACACAAATT+TGG | - | chr1.1:1891351-1891370 | MS.gene24258:intron | 35.0% | |
! | ATTTTCGGATTTCACTTAGG+TGG | + | chr1.1:1891047-1891066 | None:intergenic | 35.0% |
!! | TGAAACTTCTTTTCAGGATC+AGG | + | chr1.1:1891283-1891302 | None:intergenic | 35.0% |
!! | TGACTAAGAGCACTACAATT+TGG | - | chr1.1:1890772-1890791 | MS.gene24258:intron | 35.0% |
!! | TGACTGGTTCCTTTTAAGTA+TGG | + | chr1.1:1890193-1890212 | None:intergenic | 35.0% |
!! | TTTGGAAAAATTTGGTGTGG+CGG | + | chr1.1:1890382-1890401 | None:intergenic | 35.0% |
!!! | CAATTTTGTCGATTCCAAAC+TGG | + | chr1.1:1891637-1891656 | None:intergenic | 35.0% |
!!! | GACTTCTGAAACTTCTTTTC+AGG | + | chr1.1:1891289-1891308 | None:intergenic | 35.0% |
AAACTGTGCTGCATACTTGT+TGG | + | chr1.1:1891607-1891626 | None:intergenic | 40.0% | |
AAAGAAGAAGCAGACAGAGT+TGG | + | chr1.1:1890597-1890616 | None:intergenic | 40.0% | |
ATGTTTGTCGCGTCTCAAAT+AGG | + | chr1.1:1890895-1890914 | None:intergenic | 40.0% | |
!! | ATCCAACTTATGGTTTGGTG+CGG | - | chr1.1:1890353-1890372 | MS.gene24258:CDS | 40.0% |
ACAGTTTCACGTTGCCAGTT+TGG | - | chr1.1:1891620-1891639 | MS.gene24258:intron | 45.0% | |
ATTAAAGGGGTCCCTTACGT+GGG | + | chr1.1:1891329-1891348 | None:intergenic | 45.0% | |
TATTAAAGGGGTCCCTTACG+TGG | + | chr1.1:1891330-1891349 | None:intergenic | 45.0% | |
TCTGAATGAGCCACCAATGA+TGG | - | chr1.1:1891572-1891591 | MS.gene24258:intron | 45.0% | |
TTGGATGCAGCTTCCATCAT+TGG | + | chr1.1:1891588-1891607 | None:intergenic | 45.0% | |
! | AAGAAGCAGACAGAGTTGGT+GGG | + | chr1.1:1890593-1890612 | None:intergenic | 45.0% |
!! | CAGGTGGACTAAGAGTAACT+GGG | - | chr1.1:1891545-1891564 | MS.gene24258:intron | 45.0% |
!! | TACTTGCCACTTTCCAGCAT+GGG | - | chr1.1:1890327-1890346 | MS.gene24258:CDS | 45.0% |
!! | TATTATAGTTATATAATAAT+TGG | - | chr1.1:1891422-1891441 | MS.gene24258:CDS | 5.0% |
!! | TATTATATAACTATAATAAT+TGG | + | chr1.1:1891420-1891439 | None:intergenic | 5.0% |
!!! | TGTATTTTATTTATTTTTTT+TGG | + | chr1.1:1890400-1890419 | None:intergenic | 5.0% |
AGCCGCACCAAACCATAAGT+TGG | + | chr1.1:1890358-1890377 | None:intergenic | 50.0% | |
GAAGAAGCAGACAGAGTTGG+TGG | + | chr1.1:1890594-1890613 | None:intergenic | 50.0% | |
GATGCAGCTTCCATCATTGG+TGG | + | chr1.1:1891585-1891604 | None:intergenic | 50.0% | |
GGCGGATCCAACTTATGGTT+TGG | - | chr1.1:1890348-1890367 | MS.gene24258:CDS | 50.0% | |
GGGTTCTCTTATGGCAGGAT+GGG | - | chr1.1:1890002-1890021 | MS.gene24258:CDS | 50.0% | |
GGTTCTCTTATGGCAGGATG+GGG | - | chr1.1:1890003-1890022 | MS.gene24258:CDS | 50.0% | |
TGCTGGAAAGTGGCAAGTAG+AGG | + | chr1.1:1890326-1890345 | None:intergenic | 50.0% | |
TGGGTTCTCTTATGGCAGGA+TGG | - | chr1.1:1890001-1890020 | MS.gene24258:CDS | 50.0% | |
!! | AGAAGCAGACAGAGTTGGTG+GGG | + | chr1.1:1890592-1890611 | None:intergenic | 50.0% |
!! | CTACTTGCCACTTTCCAGCA+TGG | - | chr1.1:1890326-1890345 | MS.gene24258:CDS | 50.0% |
!! | GCAGGTGGACTAAGAGTAAC+TGG | - | chr1.1:1891544-1891563 | MS.gene24258:intron | 50.0% |
GAAGTCAATGACCATGCCCG+TGG | - | chr1.1:1891303-1891322 | MS.gene24258:intron | 55.0% | |
GCATGGGCGGATCCAACTTA+TGG | - | chr1.1:1890343-1890362 | MS.gene24258:CDS | 55.0% | |
! | TAAGTTGGATCCGCCCATGC+TGG | + | chr1.1:1890343-1890362 | None:intergenic | 55.0% |
!! | TTGCCACTTTCCAGCATGGG+CGG | - | chr1.1:1890330-1890349 | MS.gene24258:CDS | 55.0% |
GATCCGCCCATGCTGGAAAG+TGG | + | chr1.1:1890336-1890355 | None:intergenic | 60.0% | |
CATGCCCGTGGCCCACGTAA+GGG | - | chr1.1:1891315-1891334 | MS.gene24258:intron | 65.0% | |
CCATGCCCGTGGCCCACGTA+AGG | - | chr1.1:1891314-1891333 | MS.gene24258:intron | 70.0% | |
CCTTACGTGGGCCACGGGCA+TGG | + | chr1.1:1891317-1891336 | None:intergenic | 70.0% | |
GGGGTCCCTTACGTGGGCCA+CGG | + | chr1.1:1891323-1891342 | None:intergenic | 70.0% | |
GGGTCCCTTACGTGGGCCAC+GGG | + | chr1.1:1891322-1891341 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 1890000 | 1891683 | 1890000 | ID=MS.gene24258 |
chr1.1 | mRNA | 1890000 | 1891683 | 1890000 | ID=MS.gene24258.t1;Parent=MS.gene24258 |
chr1.1 | exon | 1891632 | 1891683 | 1891632 | ID=MS.gene24258.t1.exon1;Parent=MS.gene24258.t1 |
chr1.1 | CDS | 1891632 | 1891683 | 1891632 | ID=cds.MS.gene24258.t1;Parent=MS.gene24258.t1 |
chr1.1 | exon | 1891375 | 1891493 | 1891375 | ID=MS.gene24258.t1.exon2;Parent=MS.gene24258.t1 |
chr1.1 | CDS | 1891375 | 1891493 | 1891375 | ID=cds.MS.gene24258.t1;Parent=MS.gene24258.t1 |
chr1.1 | exon | 1890285 | 1890403 | 1890285 | ID=MS.gene24258.t1.exon3;Parent=MS.gene24258.t1 |
chr1.1 | CDS | 1890285 | 1890403 | 1890285 | ID=cds.MS.gene24258.t1;Parent=MS.gene24258.t1 |
chr1.1 | exon | 1890000 | 1890135 | 1890000 | ID=MS.gene24258.t1.exon4;Parent=MS.gene24258.t1 |
chr1.1 | CDS | 1890000 | 1890135 | 1890000 | ID=cds.MS.gene24258.t1;Parent=MS.gene24258.t1 |
Gene Sequence |
Protein sequence |