AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24283

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24283.t1 MTR_1g022245 97.194 499 14 0 1 499 1 499 0.0 1009
MS.gene24283.t1 MTR_2g030420 54.603 478 194 4 3 477 8 465 0.0 539
MS.gene24283.t1 MTR_4g107370 53.279 488 220 4 1 483 6 490 0.0 536
MS.gene24283.t1 MTR_1g022250 55.765 477 193 4 3 476 5 466 0.0 536
MS.gene24283.t1 MTR_6g009540 52.190 525 215 10 3 511 5 509 4.82e-180 516
MS.gene24283.t1 MTR_7g008040 53.433 466 204 5 1 460 1 459 5.96e-176 506
MS.gene24283.t1 MTR_6g009520 48.571 525 239 7 3 511 7 516 2.24e-168 486
MS.gene24283.t1 MTR_6g009553 53.778 450 195 7 21 460 1 447 4.27e-165 476
MS.gene24283.t1 MTR_6g009720 51.931 466 212 5 3 460 7 468 4.86e-165 478
MS.gene24283.t1 MTR_6g009770 51.392 467 191 9 3 460 7 446 4.72e-155 451
MS.gene24283.t1 MTR_6g042290 47.712 459 207 5 7 460 20 450 1.77e-148 435
MS.gene24283.t1 MTR_6g009510 45.892 499 181 11 3 489 20 441 6.02e-137 403
MS.gene24283.t1 MTR_6g009660 42.857 518 217 11 4 497 5 467 1.59e-127 380
MS.gene24283.t1 MTR_5g020980 37.378 511 260 10 4 491 13 486 1.15e-108 333
MS.gene24283.t1 MTR_4g128260 36.210 533 295 11 1 506 1 515 1.92e-106 328
MS.gene24283.t1 MTR_2g076970 38.645 502 252 14 1 491 1 457 5.01e-106 325
MS.gene24283.t1 MTR_2g061820 38.242 455 245 10 8 449 3 434 1.21e-103 320
MS.gene24283.t1 MTR_2g076920 37.426 505 263 10 1 496 7 467 2.83e-102 315
MS.gene24283.t1 MTR_2g076690 40.647 433 208 8 61 484 65 457 3.72e-102 315
MS.gene24283.t1 MTR_2g076710 37.474 475 248 10 1 464 5 441 2.87e-99 306
MS.gene24283.t1 MTR_2g076990 39.450 436 217 8 61 487 1 398 6.58e-97 300
MS.gene24283.t1 MTR_2g076840 37.029 478 245 10 1 466 1 434 1.80e-96 308
MS.gene24283.t1 MTR_2g076840 45.522 268 116 4 195 462 467 704 1.69e-72 244
MS.gene24283.t1 MTR_8g076920 35.352 512 275 11 9 507 28 496 7.37e-95 297
MS.gene24283.t1 MTR_2g076900 35.800 500 260 12 1 484 1 455 3.33e-92 289
MS.gene24283.t1 MTR_5g020990 37.410 417 213 10 63 461 84 470 4.45e-87 276
MS.gene24283.t1 MTR_3g103150 42.581 310 139 6 154 461 4 276 3.04e-78 247
MS.gene24283.t1 MTR_1g011680 68.675 166 45 3 335 499 7 166 3.50e-63 204
MS.gene24283.t1 MTR_7g117950 31.477 413 213 11 57 462 57 406 2.80e-60 206
MS.gene24283.t1 MTR_3g092060 31.959 388 203 8 61 441 63 396 7.00e-58 200
MS.gene24283.t1 MTR_5g021020 35.583 326 153 8 138 461 135 405 4.31e-56 193
MS.gene24283.t1 MTR_8g027200 28.059 474 239 13 35 501 34 412 2.00e-48 174
MS.gene24283.t1 MTR_1g113750 67.200 125 22 2 389 509 16 125 7.43e-45 154
MS.gene24283.t1 MTR_5g020720 36.464 181 84 5 259 437 25 176 2.61e-27 108
MS.gene24283.t1 MTR_5g021000 50.000 108 49 2 356 461 1 105 9.59e-27 106
MS.gene24283.t1 MTR_1g008630 64.198 81 8 1 405 485 1 60 2.10e-22 91.7
MS.gene24283.t1 MTR_5g021010 48.352 91 42 2 373 461 34 121 1.35e-18 82.0
MS.gene24283.t1 MTR_2g076820 53.846 52 24 0 389 440 1 52 2.26e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24283.t1 AT3G28510 50.855 468 216 4 4 467 7 464 7.45e-167 483
MS.gene24283.t1 AT3G28580 50.216 462 215 6 1 457 4 455 5.78e-158 459
MS.gene24283.t1 AT3G28540 50.107 467 213 7 1 459 1 455 3.74e-156 454
MS.gene24283.t1 AT3G28540 50.107 467 213 7 1 459 1 455 4.45e-156 454
MS.gene24283.t1 AT5G40010 48.077 520 246 7 1 511 4 508 1.14e-152 446
MS.gene24283.t1 AT3G28600 50.316 475 188 11 8 465 7 450 2.48e-150 439
MS.gene24283.t1 AT3G28610 49.580 476 193 12 7 465 5 450 1.41e-148 434
MS.gene24283.t1 AT5G40000 46.800 500 209 10 1 481 4 465 5.14e-145 425
MS.gene24283.t1 AT3G28580 46.970 462 208 7 1 457 4 433 2.04e-140 413
MS.gene24283.t1 AT3G28570 46.584 483 201 9 8 476 9 448 6.05e-138 406
MS.gene24283.t1 AT3G28570 46.584 483 201 9 8 476 16 455 6.98e-138 406
MS.gene24283.t1 AT3G28520 46.626 489 225 7 12 480 1 473 2.13e-135 400
MS.gene24283.t1 AT3G28600 46.947 475 165 10 8 465 7 411 8.37e-134 395
MS.gene24283.t1 AT4G25835 38.586 495 271 10 1 483 1 474 1.21e-109 335
MS.gene24283.t1 AT5G57480 36.893 515 289 11 1 502 1 492 6.75e-108 331
MS.gene24283.t1 AT3G50940 40.173 463 224 11 20 471 31 451 1.77e-105 323
MS.gene24283.t1 AT2G18193 38.689 473 237 12 15 477 25 454 6.69e-103 318
MS.gene24283.t1 AT3G50930 39.050 484 252 9 16 485 73 527 2.65e-101 316
MS.gene24283.t1 AT5G17740 36.779 503 270 12 4 494 13 479 5.74e-97 303
MS.gene24283.t1 AT4G30250 37.395 476 266 7 1 461 1 459 1.89e-94 296
MS.gene24283.t1 AT4G30250 37.395 476 266 7 1 461 3 461 1.93e-94 296
MS.gene24283.t1 AT2G18190 36.498 474 246 11 15 476 26 456 2.43e-94 295
MS.gene24283.t1 AT5G17730 36.941 425 219 7 57 468 62 450 1.59e-90 285
MS.gene24283.t1 AT5G17760 36.807 451 225 10 64 490 72 486 4.19e-89 282
MS.gene24283.t1 AT4G05380 39.353 371 189 6 101 468 117 454 1.87e-86 274
MS.gene24283.t1 AT5G17750 37.958 382 188 6 64 427 41 391 2.35e-79 253
MS.gene24283.t1 AT1G43910 35.363 427 224 8 46 464 68 450 1.73e-78 254
MS.gene24283.t1 AT2G46620 32.019 431 228 9 45 466 47 421 3.84e-65 219
MS.gene24283.t1 AT3G29800 31.095 402 207 10 64 458 39 377 2.12e-51 181
MS.gene24283.t1 AT5G17760 34.328 268 148 5 55 305 66 322 1.66e-49 173
MS.gene24283.t1 AT3G28560 41.204 216 112 6 4 212 7 214 7.56e-44 156
MS.gene24283.t1 AT4G05340 53.165 79 37 0 335 413 15 93 3.02e-20 85.9

Find 81 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAGTCAGGTAACACTTTC+TGG 0.123714 1.1:-2070390 MS.gene24283:CDS
TTGCAAGCTTAATGTTTATA+TGG 0.183844 1.1:-2071385 MS.gene24283:CDS
ACCAAACATGTTTGAACTTT+GGG 0.187189 1.1:-2071426 None:intergenic
AAGAGAGGCTATTTGCTTTA+TGG 0.209267 1.1:-2070714 MS.gene24283:CDS
CATCTCAGCCTCTTCCTTAG+AGG 0.245609 1.1:+2070035 None:intergenic
TGAATTTCATTGATGGGATT+TGG 0.272209 1.1:-2070362 MS.gene24283:CDS
TTTGAACTTTGGGGTCTAAT+AGG 0.288966 1.1:-2071416 MS.gene24283:CDS
CACCTTGAAGTTTCTTTGCT+TGG 0.291226 1.1:+2071180 None:intergenic
ATCTTACCTTAACCATGTTT+TGG 0.294915 1.1:-2070964 MS.gene24283:CDS
AGGAGATTGGTTTGAGTAAG+AGG 0.309573 1.1:-2070932 MS.gene24283:CDS
AATGAAACAGAATTTGTGTT+AGG 0.312689 1.1:+2071056 None:intergenic
TTGAAGGGGTTAAGTTTGTT+TGG 0.318297 1.1:-2071097 MS.gene24283:CDS
AACCAAACATGTTTGAACTT+TGG 0.318708 1.1:-2071427 None:intergenic
AATGTATAAGAAAGCTTCAT+TGG 0.322787 1.1:+2071232 None:intergenic
CCTTAGAGGTTCTAAGTGCT+TGG 0.356753 1.1:+2070049 None:intergenic
GATTGTTCGCTTGATCTTAC+CGG 0.367967 1.1:-2070531 MS.gene24283:CDS
AGTTGCTGCTGCTTCTCTGC+AGG 0.371093 1.1:-2070445 MS.gene24283:CDS
CTTTATGGTCCTCCTGGAAC+AGG 0.377541 1.1:-2070699 MS.gene24283:CDS
ATCCTTTGTTCGAGATGGTT+CGG 0.385486 1.1:-2070173 MS.gene24283:CDS
CCAAGCACTTAGAACCTCTA+AGG 0.388467 1.1:-2070049 MS.gene24283:CDS
AAGAATCTAACCTCAACAAA+AGG 0.394204 1.1:+2071281 None:intergenic
TGCAAGCTTAATGTTTATAT+GGG 0.401015 1.1:-2071384 MS.gene24283:CDS
TTGAAGTTTCTTTGCTTGGT+TGG 0.404145 1.1:+2071184 None:intergenic
TTGGAACAAGGTAAGGAGAT+TGG 0.405159 1.1:-2070945 MS.gene24283:CDS
TACACAAATTGCACAGGTAA+TGG 0.421924 1.1:-2070897 MS.gene24283:CDS
GGGTTATTGAATTTCATTGA+TGG 0.427942 1.1:-2070369 MS.gene24283:CDS
AGCAAAGAACAAAGCAAGTC+AGG 0.436198 1.1:-2070403 MS.gene24283:CDS
CAAGTCAGGTAACACTTTCT+GGG 0.437874 1.1:-2070389 MS.gene24283:CDS
TCATTGGTATTCTCTTCCTT+AGG 0.447944 1.1:+2069913 None:intergenic
CGAGATGGTTCGGTCCTTGT+TGG 0.450554 1.1:-2070163 MS.gene24283:CDS
ATCTCATCCTTTGTTCGAGA+TGG 0.457463 1.1:-2070178 MS.gene24283:CDS
AACAAAAGGGTAACAAAAGT+TGG 0.459264 1.1:+2071295 None:intergenic
ATGAAACAGAATTTGTGTTA+GGG 0.466214 1.1:+2071057 None:intergenic
AAAGTCTTTAGTTCTAAAGA+TGG 0.468242 1.1:-2071147 MS.gene24283:CDS
TATTTGCTTTATGGTCCTCC+TGG 0.473621 1.1:-2070705 MS.gene24283:CDS
AACCAAGCAAAGAAACTTCA+AGG 0.474512 1.1:-2071182 MS.gene24283:CDS
CCTTACCTTGTTCCAAAACA+TGG 0.476787 1.1:+2070952 None:intergenic
CATATTGAGTTGTCTTATTG+TGG 0.480153 1.1:-2070246 MS.gene24283:CDS
GGTTATTGAATTTCATTGAT+GGG 0.481156 1.1:-2070368 MS.gene24283:CDS
GTTGCTGCTGCTTCTCTGCA+GGG 0.482716 1.1:-2070444 MS.gene24283:CDS
CTTGTTCCAAAACATGGTTA+AGG 0.486598 1.1:+2070958 None:intergenic
TGATCTTGTTACATTCAGTA+AGG 0.490186 1.1:-2070772 MS.gene24283:CDS
GGGATTTGGTCTGCTAGTAC+TGG 0.502830 1.1:-2070348 MS.gene24283:CDS
AGAAGAAGGGACAGGTGAAG+AGG 0.504002 1.1:-2069977 MS.gene24283:CDS
TAAGAAAGAAGCAGAGATGA+AGG 0.504395 1.1:-2070007 MS.gene24283:CDS
GGAGAATGACAGAGAAAAGA+AGG 0.505958 1.1:-2070490 MS.gene24283:CDS
GAATACCAATGAAAATTCCT+AGG 0.507426 1.1:-2069902 None:intergenic
GCAATTGTCTCAAAAGAAGA+TGG 0.507729 1.1:+2070828 None:intergenic
GTTAGATTCTTTGAGAACAT+TGG 0.509702 1.1:-2071269 MS.gene24283:CDS
CAGGTAATGGTGAATATGAA+AGG 0.510294 1.1:-2070884 MS.gene24283:CDS
ATGAAGGCTGAGAAAGAAGA+AGG 0.511615 1.1:-2069991 MS.gene24283:CDS
CGGTCAGAGGAAGACAGATT+CGG 0.513344 1.1:-2070511 MS.gene24283:CDS
CCAAACATGTTTGAACTTTG+GGG 0.515294 1.1:-2071425 None:intergenic
AGCAAATAGCCTCTCTTCCA+AGG 0.530468 1.1:+2070720 None:intergenic
TTTGATTCGTCGTGGACGAA+TGG 0.533266 1.1:-2070274 MS.gene24283:CDS
AGGTAATGGTGAATATGAAA+GGG 0.535037 1.1:-2070883 MS.gene24283:CDS
AGAATCTAACCTCAACAAAA+GGG 0.545291 1.1:+2071282 None:intergenic
CGCTTGATCTTACCGGTCAG+AGG 0.554416 1.1:-2070524 MS.gene24283:CDS
GACCGAACCATCTCGAACAA+AGG 0.555408 1.1:+2070171 None:intergenic
ATTGGTAAGCCTTGGAAGAG+AGG 0.555511 1.1:-2070729 MS.gene24283:CDS
TGAAGAGGATTCATCAGAGA+AGG 0.557487 1.1:-2069962 MS.gene24283:CDS
CGAATCTGTCTTCCTCTGAC+CGG 0.558778 1.1:+2070512 None:intergenic
ACTTAGAACCTCTAAGGAAG+AGG 0.569363 1.1:-2070043 MS.gene24283:CDS
GCTGAGAAAGAAGAAGGGAC+AGG 0.571855 1.1:-2069985 MS.gene24283:CDS
AAGCTTTACACAAATTGCAC+AGG 0.572705 1.1:-2070903 MS.gene24283:CDS
ACATCTTCATCAGCTACCTT+AGG 0.574849 1.1:+2070096 None:intergenic
TATATTCACTACTAACTATG+TGG 0.586952 1.1:-2070313 MS.gene24283:CDS
TGCTGAAAACTTGATGCCTA+AGG 0.589054 1.1:-2070112 MS.gene24283:CDS
AATATGAAAGGGGAGGTAAG+TGG 0.596088 1.1:-2070872 MS.gene24283:CDS
TGCAGAAGACAAGAAGCCTA+AGG 0.596943 1.1:-2069929 MS.gene24283:CDS
AGAGGATTCATCAGAGAAGG+AGG 0.600261 1.1:-2069959 MS.gene24283:CDS
GGTAGCTGATGAAGATGTTG+AGG 0.602813 1.1:-2070091 MS.gene24283:CDS
CATGTTAGTCTCTTCCAACA+AGG 0.626039 1.1:+2070149 None:intergenic
TGAAGGCTGAGAAAGAAGAA+GGG 0.627565 1.1:-2069990 MS.gene24283:CDS
AATCACGAGTAAATCTGTTG+TGG 0.629066 1.1:-2070568 MS.gene24283:CDS
GATCAAGCTTTGATTCGTCG+TGG 0.629566 1.1:-2070282 MS.gene24283:CDS
ATGTTGAGGCATCATTAGAG+AGG 0.635432 1.1:-2070077 MS.gene24283:CDS
AATGGTGAATATGAAAGGGG+AGG 0.665295 1.1:-2070879 MS.gene24283:CDS
GGTAATGGTGAATATGAAAG+GGG 0.666341 1.1:-2070882 MS.gene24283:CDS
ATGAGTGCATGAACTTGATG+AGG 0.669050 1.1:+2071341 None:intergenic
GACTGCGATGAAATGTGAGA+AGG 0.695268 1.1:+2071006 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGAGTATTATGCAAAAAT+TGG - chr1.1:2070575-2070594 MS.gene24283:CDS 20.0%
! AATGAAACAGAATTTGTGTT+AGG + chr1.1:2070269-2070288 None:intergenic 25.0%
! AATGTATAAGAAAGCTTCAT+TGG + chr1.1:2070093-2070112 None:intergenic 25.0%
! ATGAAACAGAATTTGTGTTA+GGG + chr1.1:2070268-2070287 None:intergenic 25.0%
! GGTTATTGAATTTCATTGAT+GGG - chr1.1:2070954-2070973 MS.gene24283:CDS 25.0%
! TATATTCACTACTAACTATG+TGG - chr1.1:2071009-2071028 MS.gene24283:CDS 25.0%
! TGAAAAATAATGCTGAGTTA+AGG - chr1.1:2070717-2070736 MS.gene24283:CDS 25.0%
! TGCAAGCTTAATGTTTATAT+GGG - chr1.1:2069938-2069957 MS.gene24283:CDS 25.0%
! TTGCAAGCTTAATGTTTATA+TGG - chr1.1:2069937-2069956 MS.gene24283:CDS 25.0%
!! ACAATCTCTTTCTTCTTTTT+AGG + chr1.1:2070527-2070546 None:intergenic 25.0%
!!! AAAGTCTTTAGTTCTAAAGA+TGG - chr1.1:2070175-2070194 MS.gene24283:CDS 25.0%
!!! AAGTTTTATGATGAGTTTGA+AGG - chr1.1:2070209-2070228 MS.gene24283:CDS 25.0%
!!! AGTTTTATGATGAGTTTGAA+GGG - chr1.1:2070210-2070229 MS.gene24283:CDS 25.0%
AACAAAAGGGTAACAAAAGT+TGG + chr1.1:2070030-2070049 None:intergenic 30.0%
AAGAATCTAACCTCAACAAA+AGG + chr1.1:2070044-2070063 None:intergenic 30.0%
AGAAAAGAAGGAGAAAAATG+AGG - chr1.1:2070844-2070863 MS.gene24283:CDS 30.0%
AGAATCTAACCTCAACAAAA+GGG + chr1.1:2070043-2070062 None:intergenic 30.0%
GGGTTATTGAATTTCATTGA+TGG - chr1.1:2070953-2070972 MS.gene24283:CDS 30.0%
TGAATTTCATTGATGGGATT+TGG - chr1.1:2070960-2070979 MS.gene24283:CDS 30.0%
TGATCTTGTTACATTCAGTA+AGG - chr1.1:2070550-2070569 MS.gene24283:CDS 30.0%
! AGGTAATGGTGAATATGAAA+GGG - chr1.1:2070439-2070458 MS.gene24283:CDS 30.0%
! ATCTTACCTTAACCATGTTT+TGG - chr1.1:2070358-2070377 MS.gene24283:CDS 30.0%
! CATATTGAGTTGTCTTATTG+TGG - chr1.1:2071076-2071095 MS.gene24283:CDS 30.0%
! GAGTTAAGGAAACTTTTGAT+TGG - chr1.1:2070731-2070750 MS.gene24283:CDS 30.0%
! GTTAGATTCTTTGAGAACAT+TGG - chr1.1:2070053-2070072 MS.gene24283:CDS 30.0%
! GTTTTATGATGAGTTTGAAG+GGG - chr1.1:2070211-2070230 MS.gene24283:CDS 30.0%
!! CTCAGCATTATTTTTCACAT+TGG + chr1.1:2070714-2070733 None:intergenic 30.0%
!!! TTGTCTTATTGTGGTTTTGA+TGG - chr1.1:2071085-2071104 MS.gene24283:CDS 30.0%
!!! TTTTGATGGATTCAAAATGC+TGG - chr1.1:2071099-2071118 MS.gene24283:CDS 30.0%
AAAGAAGGAGAAAAATGAGG+AGG - chr1.1:2070847-2070866 MS.gene24283:CDS 35.0%
AACCAAGCAAAGAAACTTCA+AGG - chr1.1:2070140-2070159 MS.gene24283:CDS 35.0%
AAGAGAGGCTATTTGCTTTA+TGG - chr1.1:2070608-2070627 MS.gene24283:CDS 35.0%
AAGCTTTACACAAATTGCAC+AGG - chr1.1:2070419-2070438 MS.gene24283:CDS 35.0%
AATCACGAGTAAATCTGTTG+TGG - chr1.1:2070754-2070773 MS.gene24283:CDS 35.0%
ATGCAAAAATTGGTAAGCCT+TGG - chr1.1:2070585-2070604 MS.gene24283:CDS 35.0%
CTTGTTCCAAAACATGGTTA+AGG + chr1.1:2070367-2070386 None:intergenic 35.0%
GCAATTGTCTCAAAAGAAGA+TGG + chr1.1:2070497-2070516 None:intergenic 35.0%
TAAGAAAGAAGCAGAGATGA+AGG - chr1.1:2071315-2071334 MS.gene24283:CDS 35.0%
TACACAAATTGCACAGGTAA+TGG - chr1.1:2070425-2070444 MS.gene24283:CDS 35.0%
TCATTGGTATTCTCTTCCTT+AGG + chr1.1:2071412-2071431 None:intergenic 35.0%
TTGAAGTTTCTTTGCTTGGT+TGG + chr1.1:2070141-2070160 None:intergenic 35.0%
! CAGGTAATGGTGAATATGAA+AGG - chr1.1:2070438-2070457 MS.gene24283:CDS 35.0%
! CTTTTGTTACCCTTTTGTTG+AGG - chr1.1:2070031-2070050 MS.gene24283:CDS 35.0%
! GGTAATGGTGAATATGAAAG+GGG - chr1.1:2070440-2070459 MS.gene24283:CDS 35.0%
! TTGAAGGGGTTAAGTTTGTT+TGG - chr1.1:2070225-2070244 MS.gene24283:CDS 35.0%
!! TAGAATCTTTTGTCTGAAGC+TGG + chr1.1:2070296-2070315 None:intergenic 35.0%
!! TTTGAACTTTGGGGTCTAAT+AGG - chr1.1:2069906-2069925 MS.gene24283:CDS 35.0%
!!! CTTAACCATGTTTTGGAACA+AGG - chr1.1:2070365-2070384 MS.gene24283:CDS 35.0%
AATATGAAAGGGGAGGTAAG+TGG - chr1.1:2070450-2070469 MS.gene24283:CDS 40.0%
AATGGTGAATATGAAAGGGG+AGG - chr1.1:2070443-2070462 MS.gene24283:CDS 40.0%
ACATCTTCATCAGCTACCTT+AGG + chr1.1:2071229-2071248 None:intergenic 40.0%
AGCAAAGAACAAAGCAAGTC+AGG - chr1.1:2070919-2070938 MS.gene24283:CDS 40.0%
ATCCTTTGTTCGAGATGGTT+CGG - chr1.1:2071149-2071168 MS.gene24283:CDS 40.0%
ATCTCATCCTTTGTTCGAGA+TGG - chr1.1:2071144-2071163 MS.gene24283:CDS 40.0%
ATGAAGGCTGAGAAAGAAGA+AGG - chr1.1:2071331-2071350 MS.gene24283:CDS 40.0%
ATGAGTGCATGAACTTGATG+AGG + chr1.1:2069984-2070003 None:intergenic 40.0%
CAAGTCAGGTAACACTTTCT+GGG - chr1.1:2070933-2070952 MS.gene24283:CDS 40.0%
CACCTTGAAGTTTCTTTGCT+TGG + chr1.1:2070145-2070164 None:intergenic 40.0%
CCTTACCTTGTTCCAAAACA+TGG + chr1.1:2070373-2070392 None:intergenic 40.0%
GATTGTTCGCTTGATCTTAC+CGG - chr1.1:2070791-2070810 MS.gene24283:CDS 40.0%
GGAGAATGACAGAGAAAAGA+AGG - chr1.1:2070832-2070851 MS.gene24283:CDS 40.0%
TATTTGCTTTATGGTCCTCC+TGG - chr1.1:2070617-2070636 MS.gene24283:CDS 40.0%
TGAAGAGGATTCATCAGAGA+AGG - chr1.1:2071360-2071379 MS.gene24283:CDS 40.0%
TGAAGGCTGAGAAAGAAGAA+GGG - chr1.1:2071332-2071351 MS.gene24283:CDS 40.0%
TGCTGAAAACTTGATGCCTA+AGG - chr1.1:2071210-2071229 MS.gene24283:CDS 40.0%
TTGGAACAAGGTAAGGAGAT+TGG - chr1.1:2070377-2070396 MS.gene24283:CDS 40.0%
! AAGTTTTCAGCAACATCAGC+TGG + chr1.1:2071202-2071221 None:intergenic 40.0%
! ACTTAGAACCTCTAAGGAAG+AGG - chr1.1:2071279-2071298 MS.gene24283:CDS 40.0%
! AGTGATGATTTTCCTGTTCC+AGG + chr1.1:2070638-2070657 None:intergenic 40.0%
! ATGTTGAGGCATCATTAGAG+AGG - chr1.1:2071245-2071264 MS.gene24283:CDS 40.0%
! CATGTTAGTCTCTTCCAACA+AGG + chr1.1:2071176-2071195 None:intergenic 40.0%
!! AGGAGATTGGTTTGAGTAAG+AGG - chr1.1:2070390-2070409 MS.gene24283:CDS 40.0%
!!! CCATGTTTTGGAACAAGGTA+AGG - chr1.1:2070370-2070389 MS.gene24283:CDS 40.0%
AGAGGATTCATCAGAGAAGG+AGG - chr1.1:2071363-2071382 MS.gene24283:CDS 45.0%
AGCAAATAGCCTCTCTTCCA+AGG + chr1.1:2070605-2070624 None:intergenic 45.0%
ATTGGTAAGCCTTGGAAGAG+AGG - chr1.1:2070593-2070612 MS.gene24283:CDS 45.0%
CCAAGCACTTAGAACCTCTA+AGG - chr1.1:2071273-2071292 MS.gene24283:CDS 45.0%
GACTGCGATGAAATGTGAGA+AGG + chr1.1:2070319-2070338 None:intergenic 45.0%
GCAAGTCAGGTAACACTTTC+TGG - chr1.1:2070932-2070951 MS.gene24283:CDS 45.0%
GGTAGCTGATGAAGATGTTG+AGG - chr1.1:2071231-2071250 MS.gene24283:CDS 45.0%
TGCAGAAGACAAGAAGCCTA+AGG - chr1.1:2071393-2071412 MS.gene24283:CDS 45.0%
! GATCAAGCTTTGATTCGTCG+TGG - chr1.1:2071040-2071059 MS.gene24283:CDS 45.0%
! GATGATTTTCCTGTTCCAGG+AGG + chr1.1:2070635-2070654 None:intergenic 45.0%
! TTTGATTCGTCGTGGACGAA+TGG - chr1.1:2071048-2071067 MS.gene24283:CDS 45.0%
!! CCTTAGAGGTTCTAAGTGCT+TGG + chr1.1:2071276-2071295 None:intergenic 45.0%
AGAAGAAGGGACAGGTGAAG+AGG - chr1.1:2071345-2071364 MS.gene24283:CDS 50.0%
CATCTCAGCCTCTTCCTTAG+AGG + chr1.1:2071290-2071309 None:intergenic 50.0%
CGAATCTGTCTTCCTCTGAC+CGG + chr1.1:2070813-2070832 None:intergenic 50.0%
CGGTCAGAGGAAGACAGATT+CGG - chr1.1:2070811-2070830 MS.gene24283:CDS 50.0%
CTTTATGGTCCTCCTGGAAC+AGG - chr1.1:2070623-2070642 MS.gene24283:CDS 50.0%
GACCGAACCATCTCGAACAA+AGG + chr1.1:2071154-2071173 None:intergenic 50.0%
GCTGAGAAAGAAGAAGGGAC+AGG - chr1.1:2071337-2071356 MS.gene24283:CDS 50.0%
! GGGATTTGGTCTGCTAGTAC+TGG - chr1.1:2070974-2070993 MS.gene24283:CDS 50.0%
CGCTTGATCTTACCGGTCAG+AGG - chr1.1:2070798-2070817 MS.gene24283:CDS 55.0%
! AGTTGCTGCTGCTTCTCTGC+AGG - chr1.1:2070877-2070896 MS.gene24283:CDS 55.0%
! GTTGCTGCTGCTTCTCTGCA+GGG - chr1.1:2070878-2070897 MS.gene24283:CDS 55.0%
!! CGAGATGGTTCGGTCCTTGT+TGG - chr1.1:2071159-2071178 MS.gene24283:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 2069903 2071441 2069903 ID=MS.gene24283
chr1.1 mRNA 2069903 2071441 2069903 ID=MS.gene24283.t1;Parent=MS.gene24283
chr1.1 exon 2069903 2071441 2069903 ID=MS.gene24283.t1.exon1;Parent=MS.gene24283.t1
chr1.1 CDS 2069903 2071441 2069903 ID=cds.MS.gene24283.t1;Parent=MS.gene24283.t1
Gene Sequence

>MS.gene24283

ATGTTTGAACTTTGGGGTCTAATAGGTTCAAAGCTTGCAAGCTTAATGTTTATATGGGCTATGATTCAAAGTTATTGTCCTCATCAAGTTCATGCACTCATTGAGAAATTCTCAGAGAAATTAGCCAACTTTTGTTACCCTTTTGTTGAGGTTAGATTCTTTGAGAACATTGGTGATTACATGAAAACCAATGAAGCTTTCTTATACATTGAAAACTACTTAACATCTAAATCAACCAACCAAGCAAAGAAACTTCAAGGTGAATATGCGAGAAAGTCTTTAGTTCTAAAGATGGATGAAAGACAAAAGTTTTATGATGAGTTTGAAGGGGTTAAGTTTGTTTGGAGTCTAATCAAGATTGTCCCTAACACAAATTCTGTTTCATTCTATCCAGCTTCAGACAAAAGATTCTACCTTCTCACATTTCATCGCAGTCATCGCGATTTTGTTGAGAAATCTTACCTTAACCATGTTTTGGAACAAGGTAAGGAGATTGGTTTGAGTAAGAGGCAGAGAAAGCTTTACACAAATTGCACAGGTAATGGTGAATATGAAAGGGGAGGTAAGTGGAGTCATGTGATATTTGAACATCCATCTTCTTTTGAGACAATTGCAATGAATCCTAAAAAGAAGAAAGAGATTGTTGATGATCTTGTTACATTCAGTAAGGCTAAAGAGTATTATGCAAAAATTGGTAAGCCTTGGAAGAGAGGCTATTTGCTTTATGGTCCTCCTGGAACAGGAAAATCATCACTAGTTGCTGCTATTGCTAATTTTTTGAAGTATGATATTTATGACATTGAGTTAACCAATGTGAAAAATAATGCTGAGTTAAGGAAACTTTTGATTGGAATCACGAGTAAATCTGTTGTGGTTATTGAAGATATTGATTGTTCGCTTGATCTTACCGGTCAGAGGAAGACAGATTCGGAGAATGACAGAGAAAAGAAGGAGAAAAATGAGGAGGTGAATCAAGTTGCTGCTGCTTCTCTGCAGGGATTACAAGCAGCAGATAAAGCAAAGAACAAAGCAAGTCAGGTAACACTTTCTGGGTTATTGAATTTCATTGATGGGATTTGGTCTGCTAGTACTGGTGAGAGATTGATTATATTCACTACTAACTATGTGGAGAAACTTGATCAAGCTTTGATTCGTCGTGGACGAATGGACATGCATATTGAGTTGTCTTATTGTGGTTTTGATGGATTCAAAATGCTGGCAATGAATTATCTGAGTATTGAATCTCATCCTTTGTTCGAGATGGTTCGGTCCTTGTTGGAAGAGACTAACATGACTCCAGCTGATGTTGCTGAAAACTTGATGCCTAAGGTAGCTGATGAAGATGTTGAGGCATCATTAGAGAGGTTGATCCAAGCACTTAGAACCTCTAAGGAAGAGGCTGAGATGAAAGCTAAGAAAGAAGCAGAGATGAAGGCTGAGAAAGAAGAAGGGACAGGTGAAGAGGATTCATCAGAGAAGGAGGCAGAAGATGCAGAAGACAAGAAGCCTAAGGAAGAGAATACCAATGAAAATTCCTAG
Protein sequence

>MS.gene24283.t1

MFELWGLIGSKLASLMFIWAMIQSYCPHQVHALIEKFSEKLANFCYPFVEVRFFENIGDYMKTNEAFLYIENYLTSKSTNQAKKLQGEYARKSLVLKMDERQKFYDEFEGVKFVWSLIKIVPNTNSVSFYPASDKRFYLLTFHRSHRDFVEKSYLNHVLEQGKEIGLSKRQRKLYTNCTGNGEYERGGKWSHVIFEHPSSFETIAMNPKKKKEIVDDLVTFSKAKEYYAKIGKPWKRGYLLYGPPGTGKSSLVAAIANFLKYDIYDIELTNVKNNAELRKLLIGITSKSVVVIEDIDCSLDLTGQRKTDSENDREKKEKNEEVNQVAAASLQGLQAADKAKNKASQVTLSGLLNFIDGIWSASTGERLIIFTTNYVEKLDQALIRRGRMDMHIELSYCGFDGFKMLAMNYLSIESHPLFEMVRSLLEETNMTPADVAENLMPKVADEDVEASLERLIQALRTSKEEAEMKAKKEAEMKAEKEEGTGEEDSSEKEAEDAEDKKPKEENTNENS