AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24507

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24507.t1 MTR_1g017400 97.727 308 2 3 1 308 76 378 0.0 623
MS.gene24507.t1 MTR_3g103460 63.750 320 89 12 5 307 66 375 1.09e-119 358
MS.gene24507.t1 MTR_4g097520 50.765 327 120 10 5 307 66 375 1.06e-74 241
MS.gene24507.t1 MTR_8g020510 41.368 307 113 11 22 307 53 313 6.91e-56 190
MS.gene24507.t1 MTR_4g127930 56.934 137 48 1 182 307 91 227 1.10e-46 164
MS.gene24507.t1 MTR_5g015070 73.077 104 23 2 204 307 219 317 4.81e-45 160
MS.gene24507.t1 MTR_2g098180 58.140 129 32 1 179 307 129 235 1.05e-42 154
MS.gene24507.t1 MTR_4g065370 60.465 129 32 2 179 307 122 231 1.09e-42 154
MS.gene24507.t1 MTR_7g080460 71.569 102 24 2 206 307 231 327 2.36e-42 155
MS.gene24507.t1 MTR_5g031880 51.299 154 68 4 158 307 139 289 6.02e-41 149
MS.gene24507.t1 MTR_8g068510 62.385 109 36 3 201 307 91 196 9.68e-37 135
MS.gene24507.t1 MTR_4g130270 65.909 88 28 1 222 307 28 115 1.19e-31 121
MS.gene24507.t1 MTR_7g009410 58.621 87 32 2 221 307 48 130 3.84e-25 104
MS.gene24507.t1 MTR_2g460730 57.282 103 32 2 205 307 22 112 1.53e-23 99.4
MS.gene24507.t1 MTR_8g044070 52.381 105 38 4 211 307 20 120 9.98e-23 97.8
MS.gene24507.t1 MTR_8g044040 61.429 70 24 1 238 307 55 121 1.02e-21 94.7
MS.gene24507.t1 MTR_6g011490 46.957 115 50 2 201 307 15 126 3.25e-21 93.2
MS.gene24507.t1 MTR_4g007770 72.857 70 16 1 238 307 35 101 1.35e-20 90.5
MS.gene24507.t1 MTR_7g091390 71.831 71 17 1 237 307 55 122 6.03e-20 89.7
MS.gene24507.t1 MTR_8g468920 42.446 139 70 3 178 310 3 137 3.84e-19 87.4
MS.gene24507.t1 MTR_1g049140 47.872 94 39 2 214 307 109 192 2.35e-13 68.9
MS.gene24507.t1 MTR_1g049140 47.872 94 39 2 214 307 109 192 3.42e-13 69.7
MS.gene24507.t1 MTR_1g049140 47.368 95 40 2 214 308 109 193 5.70e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24507.t1 AT4G37750 47.774 337 99 16 2 309 62 350 2.66e-73 236
MS.gene24507.t1 AT1G72570 66.667 126 41 1 182 307 164 288 5.40e-52 176
MS.gene24507.t1 AT1G51190 51.220 164 56 3 144 307 116 255 3.88e-45 161
MS.gene24507.t1 AT5G57390 76.744 86 20 0 222 307 65 150 1.03e-43 155
MS.gene24507.t1 AT5G57390 76.744 86 20 0 222 307 183 268 3.49e-43 156
MS.gene24507.t1 AT3G20840 59.690 129 44 2 179 307 126 246 7.65e-43 155
MS.gene24507.t1 AT5G65510 39.407 236 106 6 108 307 4 238 1.21e-42 149
MS.gene24507.t1 AT5G17430 87.179 78 10 0 230 307 136 213 3.54e-42 152
MS.gene24507.t1 AT5G17430 87.179 78 10 0 230 307 198 275 4.90e-42 153
MS.gene24507.t1 AT5G65510 39.167 240 109 6 104 307 58 296 1.27e-41 150
MS.gene24507.t1 AT5G65510 39.167 240 109 6 104 307 58 296 1.27e-41 150
MS.gene24507.t1 AT5G65510 39.407 236 106 6 108 307 4 238 2.10e-41 149
MS.gene24507.t1 AT5G10510 65.979 97 33 0 211 307 199 295 6.75e-39 144
MS.gene24507.t1 AT5G10510 65.979 97 33 0 211 307 199 295 6.75e-39 144
MS.gene24507.t1 AT5G10510 65.979 97 33 0 211 307 222 318 7.24e-39 144
MS.gene24507.t1 AT5G10510 65.979 97 33 0 211 307 237 333 7.34e-39 144
MS.gene24507.t1 AT5G10510 65.979 97 33 0 211 307 237 333 7.34e-39 144
MS.gene24507.t1 AT5G10510 62.887 97 33 1 211 307 199 292 1.53e-34 132
MS.gene24507.t1 AT5G10510 52.137 117 36 1 211 307 237 353 2.27e-32 126
MS.gene24507.t1 AT3G54320 63.415 82 30 0 228 309 51 132 6.36e-28 112
MS.gene24507.t1 AT3G54320 57.447 94 40 0 216 309 39 132 7.81e-28 112
MS.gene24507.t1 AT2G41710 62.500 96 33 1 212 307 43 135 1.17e-24 103
MS.gene24507.t1 AT2G41710 62.500 96 33 1 212 307 43 135 1.20e-24 103
MS.gene24507.t1 AT2G41710 62.500 96 33 1 212 307 43 135 1.37e-24 103
MS.gene24507.t1 AT1G79700 73.973 73 19 0 238 310 48 120 4.00e-24 100
MS.gene24507.t1 AT1G79700 73.973 73 19 0 238 310 48 120 5.82e-24 99.8
MS.gene24507.t1 AT1G16060 54.545 121 37 4 191 307 17 123 7.60e-22 94.7
MS.gene24507.t1 AT2G41710 74.194 62 16 0 246 307 109 170 1.64e-18 85.9
MS.gene24507.t1 AT2G39250 52.308 65 21 2 243 307 109 163 9.50e-14 70.1
MS.gene24507.t1 AT2G39250 52.308 65 21 2 243 307 109 163 2.07e-13 70.1

Find 63 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCTTCTTCTTCCATTAA+TGG 0.183802 1.1:-5116771 None:intergenic
ATTGTACATCACAGTTTATT+TGG 0.185891 1.1:+5117825 MS.gene24507:intron
GTAGATATGAAGCACATTTA+TGG 0.231221 1.1:+5117614 MS.gene24507:CDS
CTTCCTTGGTGGTGCAACTA+TGG 0.232966 1.1:+5116578 MS.gene24507:CDS
CCAAATCAGATTTCAGCTTC+TGG 0.236049 1.1:+5116996 MS.gene24507:CDS
ATCTTGCTGCTCTCAAATAT+TGG 0.242252 1.1:+5117988 MS.gene24507:CDS
CCAAGGAAGTCTTCTAGTTT+TGG 0.258754 1.1:-5116564 None:intergenic
GGTTCTGTTGGAACAGTTAA+TGG 0.273924 1.1:+5116906 MS.gene24507:CDS
CCAGAAGCTGAAATCTGATT+TGG 0.290373 1.1:-5116996 None:intergenic
AACACTTCTTCATTATGTTA+TGG 0.325148 1.1:+5116207 MS.gene24507:CDS
TCTTGCTGCTCTCAAATATT+GGG 0.326373 1.1:+5117989 MS.gene24507:CDS
TCTTCATTATGTTATGGTCT+TGG 0.331906 1.1:+5116213 MS.gene24507:CDS
AGGAAAACTATTAGCACATT+TGG 0.344575 1.1:+5117092 MS.gene24507:CDS
AACAATGGCTTTATTAAGCT+TGG 0.358555 1.1:+5116638 MS.gene24507:CDS
TGTTGTCTATCAGGCATAGA+TGG 0.363633 1.1:+5117587 MS.gene24507:intron
TTGTACATCACAGTTTATTT+GGG 0.368466 1.1:+5117826 MS.gene24507:intron
TGATGGATCACTTTGCATAA+TGG 0.375080 1.1:+5116287 MS.gene24507:CDS
AAGAGAAGAATGTTCTCTAT+TGG 0.375080 1.1:-5116697 None:intergenic
AATGTATCAAAATCCATTAA+TGG 0.381901 1.1:+5116758 MS.gene24507:CDS
TACTAAAGGTGGTTATGATA+TGG 0.390901 1.1:+5117941 MS.gene24507:intron
TAGATATGAAGCACATTTAT+GGG 0.394942 1.1:+5117615 MS.gene24507:CDS
GCTATAAATACTTTCTTCCT+TGG 0.397257 1.1:-5116796 None:intergenic
TCAGATTTAAGTGGCATCAT+AGG 0.407236 1.1:-5116267 None:intergenic
TTCAACACATATAAACTTCT+CGG 0.408255 1.1:+5118016 MS.gene24507:CDS
AATAATAGTGTTGGTAGTAT+TGG 0.414510 1.1:+5116876 MS.gene24507:CDS
GTTGGAACAGTTAATGGTTG+TGG 0.452202 1.1:+5116912 MS.gene24507:CDS
GAGAAGTTTATATGTGTTGA+AGG 0.453303 1.1:-5118014 None:intergenic
CTAAGCCTTTCTATGAGTCC+TGG 0.494679 1.1:+5116948 MS.gene24507:CDS
GTTGGTAGTATTGGAGATGA+TGG 0.498430 1.1:+5116885 MS.gene24507:CDS
TTGCTTGCCATCTACCATGC+TGG 0.513656 1.1:-5118810 None:intergenic
ATTGGAGATGATGGTTCTGT+TGG 0.520794 1.1:+5116894 MS.gene24507:CDS
CAAAGAACTTCTCAGTATAG+AGG 0.520883 1.1:+5117116 MS.gene24507:CDS
AAGAGAGGACATGCTAAGGT+TGG 0.521241 1.1:+5117050 MS.gene24507:CDS
TTCCTTGGTGGTGCAACTAT+GGG 0.523268 1.1:+5116579 MS.gene24507:CDS
AAGGAAGGGCAAACAAGGAA+AGG 0.527415 1.1:+5117652 MS.gene24507:CDS
ACTCATAATCATGAATATGA+AGG 0.532843 1.1:+5116603 MS.gene24507:CDS
CCAAAACTAGAAGACTTCCT+TGG 0.533305 1.1:+5116564 MS.gene24507:CDS
ATGATGCCACTTAAATCTGA+TGG 0.537511 1.1:+5116270 MS.gene24507:CDS
ACACAGCTTGATTGAGAACC+AGG 0.546355 1.1:-5116966 None:intergenic
GCAAGAAGGAAGGGCAAACA+AGG 0.547287 1.1:+5117647 MS.gene24507:CDS
ATGGGATAACAGTTGCAAGA+AGG 0.549719 1.1:+5117633 MS.gene24507:CDS
AGTGATCCATCAGATTTAAG+TGG 0.553050 1.1:-5116276 None:intergenic
GACAGAAGCAACCTGCTCAT+AGG 0.560917 1.1:+5117072 MS.gene24507:CDS
TAAATGTGCTTCATATCTAC+CGG 0.561083 1.1:-5117611 None:intergenic
GAGAACCAGGACTCATAGAA+AGG 0.563571 1.1:-5116953 None:intergenic
CATAGGTAAAGAAGAATGAA+AGG 0.572850 1.1:-5116250 None:intergenic
TCTATCAGGCATAGATGGAC+CGG 0.575721 1.1:+5117592 MS.gene24507:intron
CATCAAGTGAATAATAGTGT+TGG 0.579792 1.1:+5116867 MS.gene24507:CDS
AAACTAGAAGACTTCCTTGG+TGG 0.581740 1.1:+5116567 MS.gene24507:CDS
GATAACAGTTGCAAGAAGGA+AGG 0.582613 1.1:+5117637 MS.gene24507:CDS
TGCTCTAAAGAATAATCTCT+AGG 0.594882 1.1:-5116837 None:intergenic
CTCACTAGATCACAATCTCA+AGG 0.609323 1.1:+5116318 MS.gene24507:CDS
AGGACATGAAAGAGAAACAA+TGG 0.613993 1.1:+5116623 MS.gene24507:CDS
CTTGCTGCTCTCAAATATTG+GGG 0.621666 1.1:+5117990 MS.gene24507:CDS
ATAACAGTTGCAAGAAGGAA+GGG 0.625126 1.1:+5117638 MS.gene24507:CDS
CTTGCCATCTACCATGCTGG+TGG 0.630256 1.1:-5118807 None:intergenic
ATATGGAAGAGAAAGCTGCA+AGG 0.633701 1.1:+5117958 MS.gene24507:CDS
TATGGAAGAGAAAGCTGCAA+GGG 0.638891 1.1:+5117959 MS.gene24507:CDS
TTCCCATAGTTGCACCACCA+AGG 0.640866 1.1:-5116581 None:intergenic
CAAACAAGGAAAGGAAGACA+AGG 0.651967 1.1:+5117661 MS.gene24507:CDS
GGAAGAAGAAGAACAAACCA+AGG 0.657484 1.1:+5116779 MS.gene24507:CDS
CTCAGTATAGAGGAGTGACA+AGG 0.659933 1.1:+5117126 MS.gene24507:CDS
TTATGCAGGCACCACCAGCA+TGG 0.670111 1.1:+5118796 MS.gene24507:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTAAATAAT+CGG - chr1.1:5118124-5118143 None:intergenic 0.0%
!! AAATAAACTCTAATTATTAA+TGG - chr1.1:5117189-5117208 None:intergenic 10.0%
!! AATAAACTCTAATTATTAAT+GGG - chr1.1:5117188-5117207 None:intergenic 10.0%
!!! GTAAAATATTTAAGAATTTT+TGG - chr1.1:5117694-5117713 None:intergenic 10.0%
!! AAAAAATAGATCTATGAAAA+AGG - chr1.1:5117864-5117883 None:intergenic 15.0%
!! AAAGAAAGAAAATAAACATA+TGG - chr1.1:5116356-5116375 None:intergenic 15.0%
!! ACAACTTAAAACTAAAAAAA+TGG - chr1.1:5116409-5116428 None:intergenic 15.0%
!!! AATGATTTTGTACTAATTTT+AGG + chr1.1:5118765-5118784 MS.gene24507:intron 15.0%
!!! TTTTTATTTATTAACATGTG+TGG - chr1.1:5117347-5117366 None:intergenic 15.0%
!! AAGAAATGAATAACATGAAT+AGG + chr1.1:5118236-5118255 MS.gene24507:intron 20.0%
!! AATGTATCAAAATCCATTAA+TGG + chr1.1:5116758-5116777 MS.gene24507:CDS 20.0%
!! CTATAACAATCAATTCAAAA+TGG - chr1.1:5116524-5116543 None:intergenic 20.0%
!! CTTTGTTAAAATGTTACTAA+AGG + chr1.1:5117927-5117946 MS.gene24507:intron 20.0%
!! GATGACAAATAATTGAAATA+AGG - chr1.1:5117439-5117458 None:intergenic 20.0%
!! TGGTTTATAAAACAAAATAG+AGG - chr1.1:5117233-5117252 None:intergenic 20.0%
!! TTAGTCTCTTAGAATAATAA+AGG + chr1.1:5118361-5118380 MS.gene24507:intron 20.0%
!!! CTTTTTACATCTGAAAATAT+TGG + chr1.1:5117734-5117753 MS.gene24507:intron 20.0%
!!! GCTTATTTTCATAAACTATT+AGG - chr1.1:5116445-5116464 None:intergenic 20.0%
!!! TAATATATTGACTTGTTTTG+AGG + chr1.1:5117395-5117414 MS.gene24507:intron 20.0%
!!! TTTATAAACCAAAGTTGATA+TGG + chr1.1:5117242-5117261 MS.gene24507:intron 20.0%
! AACAAAGTAATTAGAGTGAA+GGG - chr1.1:5118576-5118595 None:intergenic 25.0%
! AACACTTCTTCATTATGTTA+TGG + chr1.1:5116207-5116226 MS.gene24507:CDS 25.0%
! AACCTGAAAAATATGAAGAA+TGG - chr1.1:5116725-5116744 None:intergenic 25.0%
! ACCATATATATCAGATATAG+TGG - chr1.1:5117903-5117922 None:intergenic 25.0%
! ACTCATAATCATGAATATGA+AGG + chr1.1:5116603-5116622 MS.gene24507:CDS 25.0%
! ATTGTACATCACAGTTTATT+TGG + chr1.1:5117825-5117844 MS.gene24507:intron 25.0%
! CCATATATATCAGATATAGT+GGG - chr1.1:5117902-5117921 None:intergenic 25.0%
! CTAATTGCCTTTATTATCTT+TGG + chr1.1:5118185-5118204 MS.gene24507:intron 25.0%
! TAGAGAAGAAAATATACAAC+AGG - chr1.1:5118732-5118751 None:intergenic 25.0%
! TAGATATGAAGCACATTTAT+GGG + chr1.1:5117615-5117634 MS.gene24507:CDS 25.0%
! TGATGAGAAAGTTTCAAAAA+TGG + chr1.1:5117490-5117509 MS.gene24507:intron 25.0%
! TGTTAAAATGTTACTAAAGG+TGG + chr1.1:5117930-5117949 MS.gene24507:intron 25.0%
! TTATAGCTTCAAAAACTTTG+TGG + chr1.1:5116812-5116831 MS.gene24507:CDS 25.0%
! TTCAACACATATAAACTTCT+CGG + chr1.1:5118016-5118035 MS.gene24507:CDS 25.0%
! TTCAACCTTAGTGTTTATAT+CGG + chr1.1:5117320-5117339 MS.gene24507:intron 25.0%
! TTGTACATCACAGTTTATTT+GGG + chr1.1:5117826-5117845 MS.gene24507:intron 25.0%
! TTGTGATACTCAAGAAAAAA+TGG - chr1.1:5118550-5118569 None:intergenic 25.0%
!! ATATGATGATACTAAGCTTT+TGG + chr1.1:5118629-5118648 MS.gene24507:intron 25.0%
!! TTTAGGTTTAAATGTTATGC+AGG + chr1.1:5118782-5118801 MS.gene24507:intron 25.0%
!!! AATAATAGTGTTGGTAGTAT+TGG + chr1.1:5116876-5116895 MS.gene24507:CDS 25.0%
!!! ACTTACTAACTTGCTATTAT+TGG + chr1.1:5118293-5118312 MS.gene24507:intron 25.0%
!!! TTTTTTTAAATAATCGGGCA+AGG - chr1.1:5118118-5118137 None:intergenic 25.0%
AACAACTAAAACAATTGCCA+AGG - chr1.1:5117531-5117550 None:intergenic 30.0%
AAGAGAAGAATGTTCTCTAT+TGG - chr1.1:5116700-5116719 None:intergenic 30.0%
AAGTAAAGACTAAGTTGTCT+CGG + chr1.1:5118464-5118483 MS.gene24507:intron 30.0%
AATATGTTGCTCATTTGAGA+AGG + chr1.1:5118263-5118282 MS.gene24507:intron 30.0%
AATGAATAACATGAATAGGC+AGG + chr1.1:5118240-5118259 MS.gene24507:intron 30.0%
AGGAAAACTATTAGCACATT+TGG + chr1.1:5117092-5117111 MS.gene24507:CDS 30.0%
ATAAAGGCAATTAGACTCTA+AGG - chr1.1:5118179-5118198 None:intergenic 30.0%
CAACAAAGTAATTAGAGTGA+AGG - chr1.1:5118577-5118596 None:intergenic 30.0%
CAATCTGCCAAAGATAATAA+AGG - chr1.1:5118195-5118214 None:intergenic 30.0%
CATAGGTAAAGAAGAATGAA+AGG - chr1.1:5116253-5116272 None:intergenic 30.0%
CATCAAGTGAATAATAGTGT+TGG + chr1.1:5116867-5116886 MS.gene24507:CDS 30.0%
CCCACTATATCTGATATATA+TGG + chr1.1:5117899-5117918 MS.gene24507:intron 30.0%
GAATTCGAATGGTTTAACTA+TGG - chr1.1:5117470-5117489 None:intergenic 30.0%
GAGAAGTTTATATGTGTTGA+AGG - chr1.1:5118017-5118036 None:intergenic 30.0%
GCTATAAATACTTTCTTCCT+TGG - chr1.1:5116799-5116818 None:intergenic 30.0%
GTAGATATGAAGCACATTTA+TGG + chr1.1:5117614-5117633 MS.gene24507:CDS 30.0%
GTTGAAGCTAATAAAAAGAG+AGG + chr1.1:5117035-5117054 MS.gene24507:CDS 30.0%
TAAATGTGCTTCATATCTAC+CGG - chr1.1:5117614-5117633 None:intergenic 30.0%
TACTAAAGGTGGTTATGATA+TGG + chr1.1:5117941-5117960 MS.gene24507:intron 30.0%
TCAACCTTAGTGTTTATATC+GGG + chr1.1:5117321-5117340 MS.gene24507:intron 30.0%
TCTTCATTATGTTATGGTCT+TGG + chr1.1:5116213-5116232 MS.gene24507:CDS 30.0%
TGTTCTTCTTCTTCCATTAA+TGG - chr1.1:5116774-5116793 None:intergenic 30.0%
TTAGCAACAAGATCAAACTA+GGG + chr1.1:5117288-5117307 MS.gene24507:intron 30.0%
TTTAGCAACAAGATCAAACT+AGG + chr1.1:5117287-5117306 MS.gene24507:intron 30.0%
! AAATCGAGCGAAATTTTTAC+TGG + chr1.1:5118144-5118163 MS.gene24507:intron 30.0%
! ATATCAGATATAGTGGGAAT+AGG - chr1.1:5117896-5117915 None:intergenic 30.0%
! GACCATTCTTCATATTTTTC+AGG + chr1.1:5116720-5116739 MS.gene24507:CDS 30.0%
! TATCAGATATAGTGGGAATA+GGG - chr1.1:5117895-5117914 None:intergenic 30.0%
!! AACAATGGCTTTATTAAGCT+TGG + chr1.1:5116638-5116657 MS.gene24507:CDS 30.0%
!! TGCTCTAAAGAATAATCTCT+AGG - chr1.1:5116840-5116859 None:intergenic 30.0%
!! TTGTTTGTTTGTTGTCTATC+AGG + chr1.1:5117578-5117597 MS.gene24507:intron 30.0%
!!! AGATGATGCATTTTTTCTCA+AGG - chr1.1:5118338-5118357 None:intergenic 30.0%
!!! GGTTTTAATTTTATGAGCCT+TGG + chr1.1:5117511-5117530 MS.gene24507:intron 30.0%
!!! TTTTCAGGTTTTTCTTGTCA+TGG + chr1.1:5116735-5116754 MS.gene24507:CDS 30.0%
ACCCTAGAGACAAATAAGTT+GGG + chr1.1:5118395-5118414 MS.gene24507:intron 35.0%
AGATCAAACTAGGGTTGAAA+CGG + chr1.1:5117297-5117316 MS.gene24507:intron 35.0%
AGGACATGAAAGAGAAACAA+TGG + chr1.1:5116623-5116642 MS.gene24507:CDS 35.0%
AGTGATCCATCAGATTTAAG+TGG - chr1.1:5116279-5116298 None:intergenic 35.0%
ATAACAGTTGCAAGAAGGAA+GGG + chr1.1:5117638-5117657 MS.gene24507:CDS 35.0%
ATCTTGCTGCTCTCAAATAT+TGG + chr1.1:5117988-5118007 MS.gene24507:CDS 35.0%
CAAACTAGCCATATCAACTT+TGG - chr1.1:5117253-5117272 None:intergenic 35.0%
CAAAGAACTTCTCAGTATAG+AGG + chr1.1:5117116-5117135 MS.gene24507:CDS 35.0%
CTTTCTCATCAGAATTCGAA+TGG - chr1.1:5117481-5117500 None:intergenic 35.0%
GTTGACACAGTTCAGAATAA+TGG - chr1.1:5117761-5117780 None:intergenic 35.0%
TAAAAAGAGAGGACATGCTA+AGG + chr1.1:5117046-5117065 MS.gene24507:CDS 35.0%
TCAGATTTAAGTGGCATCAT+AGG - chr1.1:5116270-5116289 None:intergenic 35.0%
TCCCAACTTATTTGTCTCTA+GGG - chr1.1:5118399-5118418 None:intergenic 35.0%
TCTTGCTGCTCTCAAATATT+GGG + chr1.1:5117989-5118008 MS.gene24507:CDS 35.0%
TGGTTTAACTATGGTCGAAT+CGG - chr1.1:5117461-5117480 None:intergenic 35.0%
! AAAGAGTAGTGGCTTTTCAA+GGG + chr1.1:5118663-5118682 MS.gene24507:intron 35.0%
! ATGATGCCACTTAAATCTGA+TGG + chr1.1:5116270-5116289 MS.gene24507:CDS 35.0%
! CTAATAGTTTTCCTATGAGC+AGG - chr1.1:5117086-5117105 None:intergenic 35.0%
! TGATGGATCACTTTGCATAA+TGG + chr1.1:5116287-5116306 MS.gene24507:CDS 35.0%
!! AACTTGCTATTATTGGAGTG+AGG + chr1.1:5118300-5118319 MS.gene24507:intron 35.0%
!! GTCTCGGTTTATTTTTCTCA+AGG + chr1.1:5118480-5118499 MS.gene24507:intron 35.0%
!!! TCTAGTTTTGGAGATGAAGT+TGG - chr1.1:5116555-5116574 None:intergenic 35.0%
AAACTAGAAGACTTCCTTGG+TGG + chr1.1:5116567-5116586 MS.gene24507:CDS 40.0%
ATATGGAAGAGAAAGCTGCA+AGG + chr1.1:5117958-5117977 MS.gene24507:CDS 40.0%
ATGGGATAACAGTTGCAAGA+AGG + chr1.1:5117633-5117652 MS.gene24507:CDS 40.0%
CAAACAAGGAAAGGAAGACA+AGG + chr1.1:5117661-5117680 MS.gene24507:CDS 40.0%
CATGTCACATGTTCACATTG+TGG + chr1.1:5117784-5117803 MS.gene24507:intron 40.0%
CCAAAACTAGAAGACTTCCT+TGG + chr1.1:5116564-5116583 MS.gene24507:CDS 40.0%
CCAAATCAGATTTCAGCTTC+TGG + chr1.1:5116996-5117015 MS.gene24507:CDS 40.0%
CCAGAAGCTGAAATCTGATT+TGG - chr1.1:5116999-5117018 None:intergenic 40.0%
CTCACTAGATCACAATCTCA+AGG + chr1.1:5116318-5116337 MS.gene24507:CDS 40.0%
CTTGCTGCTCTCAAATATTG+GGG + chr1.1:5117990-5118009 MS.gene24507:CDS 40.0%
GACCCTAGAGACAAATAAGT+TGG + chr1.1:5118394-5118413 MS.gene24507:intron 40.0%
GATAACAGTTGCAAGAAGGA+AGG + chr1.1:5117637-5117656 MS.gene24507:CDS 40.0%
GGAAGAAGAAGAACAAACCA+AGG + chr1.1:5116779-5116798 MS.gene24507:CDS 40.0%
GGTTCTGTTGGAACAGTTAA+TGG + chr1.1:5116906-5116925 MS.gene24507:CDS 40.0%
GTCCCAACTTATTTGTCTCT+AGG - chr1.1:5118400-5118419 None:intergenic 40.0%
GTTGGAACAGTTAATGGTTG+TGG + chr1.1:5116912-5116931 MS.gene24507:CDS 40.0%
TATGGAAGAGAAAGCTGCAA+GGG + chr1.1:5117959-5117978 MS.gene24507:CDS 40.0%
TGTTGTCTATCAGGCATAGA+TGG + chr1.1:5117587-5117606 MS.gene24507:intron 40.0%
! ATTGGAGATGATGGTTCTGT+TGG + chr1.1:5116894-5116913 MS.gene24507:CDS 40.0%
! GAAAGAGTAGTGGCTTTTCA+AGG + chr1.1:5118662-5118681 MS.gene24507:intron 40.0%
! GATGATACTAAGCTTTTGGC+TGG + chr1.1:5118633-5118652 MS.gene24507:intron 40.0%
! TTTTTCTCAAGGACCACAGT+GGG - chr1.1:5118327-5118346 None:intergenic 40.0%
!! AAGAGTAGTGGCTTTTCAAG+GGG + chr1.1:5118664-5118683 MS.gene24507:intron 40.0%
!! GTTGGTAGTATTGGAGATGA+TGG + chr1.1:5116885-5116904 MS.gene24507:CDS 40.0%
!!! CCAAGGAAGTCTTCTAGTTT+TGG - chr1.1:5116567-5116586 None:intergenic 40.0%
!!! TTTTTTCTCAAGGACCACAG+TGG - chr1.1:5118328-5118347 None:intergenic 40.0%
AAGAGAGGACATGCTAAGGT+TGG + chr1.1:5117050-5117069 MS.gene24507:CDS 45.0%
AAGGAAGGGCAAACAAGGAA+AGG + chr1.1:5117652-5117671 MS.gene24507:CDS 45.0%
ACACAGCTTGATTGAGAACC+AGG - chr1.1:5116969-5116988 None:intergenic 45.0%
CAATGTATAGAGGGGTGACA+AGG + chr1.1:5118692-5118711 MS.gene24507:intron 45.0%
CGGTATGTTTCACGACATAG+TGG + chr1.1:5118036-5118055 MS.gene24507:intron 45.0%
CTAAGCCTTTCTATGAGTCC+TGG + chr1.1:5116948-5116967 MS.gene24507:CDS 45.0%
CTCAGTATAGAGGAGTGACA+AGG + chr1.1:5117126-5117145 MS.gene24507:CDS 45.0%
GAGAACCAGGACTCATAGAA+AGG - chr1.1:5116956-5116975 None:intergenic 45.0%
GGGTGCTTCAATGTATAGAG+GGG + chr1.1:5118684-5118703 MS.gene24507:intron 45.0%
GTGGCCCGATATAAACACTA+AGG - chr1.1:5117328-5117347 None:intergenic 45.0%
TCTATCAGGCATAGATGGAC+CGG + chr1.1:5117592-5117611 MS.gene24507:intron 45.0%
! CTGGTTTGCAGAAAGAGTAG+TGG + chr1.1:5118652-5118671 MS.gene24507:intron 45.0%
! GGGGTGCTTCAATGTATAGA+GGG + chr1.1:5118683-5118702 MS.gene24507:intron 45.0%
!! AGGGGTGCTTCAATGTATAG+AGG + chr1.1:5118682-5118701 MS.gene24507:intron 45.0%
!! TTCCTTGGTGGTGCAACTAT+GGG + chr1.1:5116579-5116598 MS.gene24507:CDS 45.0%
!!! TTTTTTTTTTTTAAATAATC+GGG - chr1.1:5118123-5118142 None:intergenic 5.0%
GACAGAAGCAACCTGCTCAT+AGG + chr1.1:5117072-5117091 MS.gene24507:CDS 50.0%
GCAAGAAGGAAGGGCAAACA+AGG + chr1.1:5117647-5117666 MS.gene24507:CDS 50.0%
TTCCCATAGTTGCACCACCA+AGG - chr1.1:5116584-5116603 None:intergenic 50.0%
!! CTTCCTTGGTGGTGCAACTA+TGG + chr1.1:5116578-5116597 MS.gene24507:CDS 50.0%
ATTGGAGTGAGGACCCACTG+TGG + chr1.1:5118311-5118330 MS.gene24507:intron 55.0%
TTATGCAGGCACCACCAGCA+TGG + chr1.1:5118796-5118815 MS.gene24507:intron 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 5116201 5118821 5116201 ID=MS.gene24507
chr1.1 mRNA 5116201 5118821 5116201 ID=MS.gene24507.t1;Parent=MS.gene24507
chr1.1 exon 5116201 5116339 5116201 ID=MS.gene24507.t1.exon1;Parent=MS.gene24507.t1
chr1.1 CDS 5116201 5116339 5116201 ID=cds.MS.gene24507.t1;Parent=MS.gene24507.t1
chr1.1 exon 5116544 5117147 5116544 ID=MS.gene24507.t1.exon2;Parent=MS.gene24507.t1
chr1.1 CDS 5116544 5117147 5116544 ID=cds.MS.gene24507.t1;Parent=MS.gene24507.t1
chr1.1 exon 5117600 5117682 5117600 ID=MS.gene24507.t1.exon3;Parent=MS.gene24507.t1
chr1.1 CDS 5117600 5117682 5117600 ID=cds.MS.gene24507.t1;Parent=MS.gene24507.t1
chr1.1 exon 5117839 5117847 5117839 ID=MS.gene24507.t1.exon4;Parent=MS.gene24507.t1
chr1.1 CDS 5117839 5117847 5117839 ID=cds.MS.gene24507.t1;Parent=MS.gene24507.t1
chr1.1 exon 5117949 5118037 5117949 ID=MS.gene24507.t1.exon5;Parent=MS.gene24507.t1
chr1.1 CDS 5117949 5118037 5117949 ID=cds.MS.gene24507.t1;Parent=MS.gene24507.t1
chr1.1 exon 5118804 5118821 5118804 ID=MS.gene24507.t1.exon6;Parent=MS.gene24507.t1
chr1.1 CDS 5118804 5118821 5118804 ID=cds.MS.gene24507.t1;Parent=MS.gene24507.t1
Gene Sequence

>MS.gene24507

ATGAACAACACTTCTTCATTATGTTATGGTCTTGGAGAAAACAACAATTCCTTTCATTCTTCTTTACCTATGATGCCACTTAAATCTGATGGATCACTTTGCATAATGGAAGAAGCTCTCACTAGATCACAATCTCAAGGTTAGTCTTTTTTCCATATGTTTATTTTCTTTCTTTACTATTTATATAACTAAATATAGAATAAAGCCATTTTTTTAGTTTTAAGTTGTTTTCATCTAATATCCTAATAGTTTATGAAAATAAGCTTGTAGACAAGTGTTTTATGAGAGTAGATAAGCTAAAATAAGCTATTTTCTCTTGACCATTTTGAATTGATTGTTATAGTGATGATGCCAACTTCATCTCCAAAACTAGAAGACTTCCTTGGTGGTGCAACTATGGGAACTCATAATCATGAATATGAAGGACATGAAAGAGAAACAATGGCTTTATTAAGCTTGGACAGCATCTACTATAACAACAATGCAGAACATGAAACCAATAGAGAACATTCTTCTCTTGACCATTCTTCATATTTTTCAGGTTTTTCTTGTCATGGAATGTATCAAAATCCATTAATGGAAGAAGAAGAACAAACCAAGGAAGAAAGTATTTATAGCTTCAAAAACTTTGTGGCTCCTAGAGATTATTCTTTAGAGCAACATCATCATCAAGTGAATAATAGTGTTGGTAGTATTGGAGATGATGGTTCTGTTGGAACAGTTAATGGTTGTGGAGAGTTACAAACTCTAAGCCTTTCTATGAGTCCTGGTTCTCAATCAAGCTGTGTTACTGTTCCAAATCAGATTTCAGCTTCTGGAACTGATTCAGTAGTTGTTGAAGCTAATAAAAAGAGAGGACATGCTAAGGTTGGACAGAAGCAACCTGCTCATAGGAAAACTATTAGCACATTTGGTCAAAGAACTTCTCAGTATAGAGGAGTGACAAGGTTAGTTTCACTTTTGAGTAACATTATTTATTTGATTCCCATTAATAATTAGAGTTTATTTATTCAAGTTTGTGATAGTTATCCTCTATTTTGTTTTATAAACCAAAGTTGATATGGCTAGTTTGATGATTGATATGATTTTAGCAACAAGATCAAACTAGGGTTGAAACGGTTCAACCTTAGTGTTTATATCGGGCCACACATGTTAATAAATAAAAAATTGAATTCACGACTTTTAAGACTGTAATAATATATTGACTTGTTTTGAGGCTTTGATATTGTAATTTGCCTTATTTCAATTATTTGTCATCCGATTCGACCATAGTTAAACCATTCGAATTCTGATGAGAAAGTTTCAAAAATGGTTTTAATTTTATGAGCCTTGGCAATTGTTTTAGTTGTTCACTTTAGTTCATGTAGTAACTACTTTTTGTTTGTTTGTTGTCTATCAGGCATAGATGGACCGGTAGATATGAAGCACATTTATGGGATAACAGTTGCAAGAAGGAAGGGCAAACAAGGAAAGGAAGACAAGGTTAGTAACCAAAAATTCTTAAATATTTTACATTATTTGTAACATAGTACACTTTTTACATCTGAAAATATTGGTCCATTATTCTGAACTGTGTCAACTAACATGTCACATGTTCACATTGTGGATGACAAATCAACAACTCATTGTACATCACAGTTTATTTGGGTAAGTACTATGTCCTTTTTCATAGATCTATTTTTTTTCAAACACCCTATTCCCACTATATCTGATATATATGGTAAATCTTTGTTAAAATGTTACTAAAGGTGGTTATGATATGGAAGAGAAAGCTGCAAGGGCTTATGATCTTGCTGCTCTCAAATATTGGGGACCTTCAACACATATAAACTTCTCGGTATGTTTCACGACATAGTGGCTTTAATGACAGAGTTCAAATTCTCTTTGAGACTGTTTAATTAAAAATATTTTTCTCCTTGCCCGATTATTTAAAAAAAAAAAAAAAATCGAGCGAAATTTTTACTGGATTTGTACTCCTTAGAGTCTAATTGCCTTTATTATCTTTGGCAGATTGAAATTTACAAAAATGAACTCGAAGAAATGAATAACATGAATAGGCAGGAATATGTTGCTCATTTGAGAAGGTATAAACACTTACTAACTTGCTATTATTGGAGTGAGGACCCACTGTGGTCCTTGAGAAAAAATGCATCATCTAATTTAGTCTCTTAGAATAATAAAGGACAACTTTGAGACCCTAGAGACAAATAAGTTGGGACAACTTATTCTTACTTGAACTAAATTGAAAATCGTGACAATGTTCAAGTAAAGACTAAGTTGTCTCGGTTTATTTTTCTCAAGGATTAGAATATTCTTTTATTTTTCTTAGAGAATAAATTGTGTTAGCCATTTTTTCTTGAGTATCACAATATCCCTTCACTCTAATTACTTTGTTGCTAAAAGCTATCAATTATTGATGTGCTTAATGATATGATGATACTAAGCTTTTGGCTGGTTTGCAGAAAGAGTAGTGGCTTTTCAAGGGGTGCTTCAATGTATAGAGGGGTGACAAGGTTTTACATTTGATTCCTGTTGTATATTTTCTTCTCTATAGATTATTTAAGAATGATTTTGTACTAATTTTAGGTTTAAATGTTATGCAGGCACCACCAGCATGGTAG
Protein sequence

>MS.gene24507.t1

MNNTSSLCYGLGENNNSFHSSLPMMPLKSDGSLCIMEEALTRSQSQVMMPTSSPKLEDFLGGATMGTHNHEYEGHERETMALLSLDSIYYNNNAEHETNREHSSLDHSSYFSGFSCHGMYQNPLMEEEEQTKEESIYSFKNFVAPRDYSLEQHHHQVNNSVGSIGDDGSVGTVNGCGELQTLSLSMSPGSQSSCVTVPNQISASGTDSVVVEANKKRGHAKVGQKQPAHRKTISTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFSAPPAW