Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24822.t1 | XP_013458408.1 | 100 | 59 | 0 | 0 | 1 | 59 | 150 | 208 | 1.50E-21 | 111.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24822.t1 | A0A072URM3 | 100.0 | 59 | 0 | 0 | 1 | 59 | 150 | 208 | 1.1e-21 | 111.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049190 | MS.gene24822 | 0.815585 | 8.57E-52 | -1.69E-46 |
MS.gene049328 | MS.gene24822 | 0.803129 | 4.04E-49 | -1.69E-46 |
MS.gene049418 | MS.gene24822 | 0.849531 | 3.05E-60 | -1.69E-46 |
MS.gene050310 | MS.gene24822 | 0.816115 | 6.53E-52 | -1.69E-46 |
MS.gene050901 | MS.gene24822 | 0.825862 | 3.72E-54 | -1.69E-46 |
MS.gene051018 | MS.gene24822 | 0.83097 | 2.18E-55 | -1.69E-46 |
MS.gene051279 | MS.gene24822 | 0.804476 | 2.12E-49 | -1.69E-46 |
MS.gene051478 | MS.gene24822 | 0.825381 | 4.84E-54 | -1.69E-46 |
MS.gene05157 | MS.gene24822 | 0.825722 | 4.02E-54 | -1.69E-46 |
MS.gene051719 | MS.gene24822 | 0.826198 | 3.10E-54 | -1.69E-46 |
MS.gene051720 | MS.gene24822 | 0.843398 | 1.44E-58 | -1.69E-46 |
MS.gene052516 | MS.gene24822 | 0.812546 | 4.02E-51 | -1.69E-46 |
MS.gene052732 | MS.gene24822 | 0.807675 | 4.50E-50 | -1.69E-46 |
MS.gene053144 | MS.gene24822 | 0.860826 | 1.58E-63 | -1.69E-46 |
MS.gene053171 | MS.gene24822 | 0.806894 | 6.59E-50 | -1.69E-46 |
MS.gene053174 | MS.gene24822 | 0.813642 | 2.31E-51 | -1.69E-46 |
MS.gene053536 | MS.gene24822 | 0.809092 | 2.24E-50 | -1.69E-46 |
MS.gene053538 | MS.gene24822 | 0.805804 | 1.12E-49 | -1.69E-46 |
MS.gene053581 | MS.gene24822 | 0.800614 | 1.33E-48 | -1.69E-46 |
MS.gene054550 | MS.gene24822 | 0.821068 | 4.92E-53 | -1.69E-46 |
MS.gene054584 | MS.gene24822 | 0.860133 | 2.55E-63 | -1.69E-46 |
MS.gene055144 | MS.gene24822 | 0.806136 | 9.52E-50 | -1.69E-46 |
MS.gene055465 | MS.gene24822 | 0.839176 | 1.85E-57 | -1.69E-46 |
MS.gene055466 | MS.gene24822 | 0.830278 | 3.21E-55 | -1.69E-46 |
MS.gene055468 | MS.gene24822 | 0.818079 | 2.36E-52 | -1.69E-46 |
MS.gene055537 | MS.gene24822 | 0.848027 | 7.96E-60 | -1.69E-46 |
MS.gene055580 | MS.gene24822 | -0.83172 | 1.42E-55 | -1.69E-46 |
MS.gene056043 | MS.gene24822 | -0.800146 | 1.65E-48 | -1.69E-46 |
MS.gene056169 | MS.gene24822 | 0.811209 | 7.85E-51 | -1.69E-46 |
MS.gene056228 | MS.gene24822 | 0.809383 | 1.94E-50 | -1.69E-46 |
MS.gene057082 | MS.gene24822 | 0.806262 | 8.96E-50 | -1.69E-46 |
MS.gene058197 | MS.gene24822 | 0.810083 | 1.38E-50 | -1.69E-46 |
MS.gene058198 | MS.gene24822 | 0.805068 | 1.60E-49 | -1.69E-46 |
MS.gene05894 | MS.gene24822 | 0.813126 | 3.00E-51 | -1.69E-46 |
MS.gene059300 | MS.gene24822 | 0.819426 | 1.17E-52 | -1.69E-46 |
MS.gene060519 | MS.gene24822 | 0.833861 | 4.18E-56 | -1.69E-46 |
MS.gene060587 | MS.gene24822 | 0.823796 | 1.14E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 10 sgRNAs with CRISPR-Local
Find 10 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAGAAAATGAAAAGCAAATA+TGG | 0.232910 | 8.1:-6884758 | MS.gene24822:CDS |
TTGCAAGAAAGAGGAGTAGA+AGG | 0.398153 | 8.1:-6884853 | MS.gene24822:CDS |
TGAAAAGCAAATATGGGCAG+TGG | 0.445200 | 8.1:-6884751 | MS.gene24822:CDS |
AGAAAATGAAAAGCAAATAT+GGG | 0.492982 | 8.1:-6884757 | MS.gene24822:CDS |
GATTGACGAAATTAAAGATA+AGG | 0.504450 | 8.1:-6884789 | MS.gene24822:CDS |
AGAACTTGAAGCTGAGAAAG+AGG | 0.510711 | 8.1:-6884879 | MS.gene24822:CDS |
AAGAGGCTATTGCAAGAAAG+AGG | 0.537999 | 8.1:-6884862 | MS.gene24822:CDS |
AATCTTAGCTACATTTGCAG+TGG | 0.558481 | 8.1:+6884808 | None:intergenic |
GAAAAGCAAATATGGGCAGT+GGG | 0.567953 | 8.1:-6884750 | MS.gene24822:CDS |
AAGGATTTCTAAAGTGCAAG+AGG | 0.585321 | 8.1:-6884834 | MS.gene24822:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAAAATGAAAAGCAAATAT+GGG | - | chr8.1:6884856-6884875 | MS.gene24822:CDS | 20.0% |
! | GAGAAAATGAAAAGCAAATA+TGG | - | chr8.1:6884855-6884874 | MS.gene24822:CDS | 25.0% |
! | GATTGACGAAATTAAAGATA+AGG | - | chr8.1:6884824-6884843 | MS.gene24822:CDS | 25.0% |
AATCTTAGCTACATTTGCAG+TGG | + | chr8.1:6884808-6884827 | None:intergenic | 35.0% | |
!! | AAGGATTTCTAAAGTGCAAG+AGG | - | chr8.1:6884779-6884798 | MS.gene24822:CDS | 35.0% |
AAGAGGCTATTGCAAGAAAG+AGG | - | chr8.1:6884751-6884770 | MS.gene24822:CDS | 40.0% | |
AGAACTTGAAGCTGAGAAAG+AGG | - | chr8.1:6884734-6884753 | MS.gene24822:CDS | 40.0% | |
GAAAAGCAAATATGGGCAGT+GGG | - | chr8.1:6884863-6884882 | MS.gene24822:CDS | 40.0% | |
TGAAAAGCAAATATGGGCAG+TGG | - | chr8.1:6884862-6884881 | MS.gene24822:CDS | 40.0% | |
TTGCAAGAAAGAGGAGTAGA+AGG | - | chr8.1:6884760-6884779 | MS.gene24822:CDS | 40.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 6884727 | 6884908 | 6884727 | ID=MS.gene24822 |
chr8.1 | mRNA | 6884727 | 6884908 | 6884727 | ID=MS.gene24822.t1;Parent=MS.gene24822 |
chr8.1 | exon | 6884727 | 6884908 | 6884727 | ID=MS.gene24822.t1.exon1;Parent=MS.gene24822.t1 |
chr8.1 | CDS | 6884727 | 6884908 | 6884727 | ID=cds.MS.gene24822.t1;Parent=MS.gene24822.t1 |
Gene Sequence |
Protein sequence |