AlfalfaGEDB | MS.gene25987

M. sativa cultivar XinJiangDaYe / MS.gene25987

KEGG: -
GO: -
PFAM: PF13621.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25987.t1	XP_003601228.2	93.1	495	33	1	1	494	1	495	4.10E-277	963.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25987.t1	Q08BY5	40.0	335	172	6	20	351	34	342	1.2e-67	258.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25987.t1	G7J4W1	93.1	495	33	1	1	494	1	495	3.0e-277	963.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene25987.t1	TR	Jumonji

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049297	MS.gene25987	0.811614	6.41E-51	-1.69E-46
MS.gene049378	MS.gene25987	0.806347	8.60E-50	-1.69E-46
MS.gene050226	MS.gene25987	0.84347	1.37E-58	-1.69E-46
MS.gene050227	MS.gene25987	0.85284	3.54E-61	-1.69E-46
MS.gene050228	MS.gene25987	0.845087	5.05E-59	-1.69E-46
MS.gene050442	MS.gene25987	0.807781	4.27E-50	-1.69E-46
MS.gene050516	MS.gene25987	0.80344	3.48E-49	-1.69E-46
MS.gene050623	MS.gene25987	-0.82743	1.57E-54	-1.69E-46
MS.gene050642	MS.gene25987	0.820755	5.80E-53	-1.69E-46
MS.gene050719	MS.gene25987	0.820393	7.03E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25987.t1	MTR_3g077420	93.750	480	30	0	15	494	16	495	0.0	941
MS.gene25987.t1	MTR_3g077420	94.737	323	17	0	15	337	16	338	0.0	653
MS.gene25987.t1	MTR_3g077420	93.728	287	18	0	15	301	16	302	0.0	573
MS.gene25987.t1	MTR_7g106990	27.723	303	140	14	7	290	197	439	4.90e-18	86.7
MS.gene25987.t1	MTR_3g099370	25.000	296	165	13	12	299	132	378	5.33e-15	78.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene25987.t1	AT5G63080	55.839	471	184	5	8	476	3	451	0.0	534
MS.gene25987.t1	AT5G06550	25.000	324	157	13	14	319	194	449	2.98e-14	75.5
MS.gene25987.t1	AT1G78280	23.411	299	166	10	12	299	125	371	5.00e-13	72.4

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Find 89 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACGTGCATGCTCTAGA+AGG	0.428150	3.3:+65695298	MS.gene25987:CDS
AAATATTGCGTCTATTAGGA+AGG	0.550115	3.3:+65695261	MS.gene25987:CDS
AAATGCCAATCCTTCAAATA+CGG	0.505177	3.3:-65692757	None:intergenic
AACAAACCAGTGGTGTTAAC+TGG	0.321042	3.3:+65692197	MS.gene25987:CDS
AACACGAAATGGCACTGGGA+AGG	0.599724	3.3:-65693742	None:intergenic
AACACGTGCATGCTCTAGAA+GGG	0.614914	3.3:+65695299	MS.gene25987:CDS
AACTTGATGATACCATCCAC+TGG	0.531578	3.3:-65694313	None:intergenic
AAGCAGCACCAAGTTGGCCA+AGG	0.555336	3.3:-65695170	None:intergenic
AAGGTCGCCCAGCTCTGCGA+CGG	0.606124	3.3:-65695548	None:intergenic
AATAAAGGGAGAAATTGAGA+AGG	0.646492	3.3:+65692121	MS.gene25987:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAAGAAAGAAAATGGG+AGG	-	chr3.3:65693966-65693985	None:intergenic	30.0%
AAACGTCTGAAAATACAGAA+TGG	-	chr3.3:65693117-65693136	None:intergenic	30.0%
AAATATTGCGTCTATTAGGA+AGG	+	chr3.3:65695261-65695280	MS.gene25987:CDS	30.0%
AAATGCCAATCCTTCAAATA+CGG	-	chr3.3:65692760-65692779	None:intergenic	30.0%
AATAAAGGGAGAAATTGAGA+AGG	+	chr3.3:65692121-65692140	MS.gene25987:CDS	30.0%
AATATAACGGCAATCAACAT+CGG	-	chr3.3:65694361-65694380	None:intergenic	30.0%
AGATGATCAACTATGTATAG+GGG	+	chr3.3:65694893-65694912	MS.gene25987:intron	30.0%
AGCTATATAATGATGCAAGT+TGG	+	chr3.3:65692360-65692379	MS.gene25987:intron	30.0%
ATAAATTTGATGAGGTCTTC+AGG	-	chr3.3:65695520-65695539	None:intergenic	30.0%
ATGCAGAATTTAGAAAACCT+AGG	-	chr3.3:65695367-65695386	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	65692095	65695603	65692095	ID=MS.gene25987
chr3.3	mRNA	65692095	65695603	65692095	ID=MS.gene25987.t1;Parent=MS.gene25987
chr3.3	exon	65692095	65692322	65692095	ID=MS.gene25987.t1.exon1;Parent=MS.gene25987.t1
chr3.3	CDS	65692095	65692322	65692095	ID=cds.MS.gene25987.t1;Parent=MS.gene25987.t1
chr3.3	exon	65692607	65692786	65692607	ID=MS.gene25987.t1.exon2;Parent=MS.gene25987.t1
chr3.3	CDS	65692607	65692786	65692607	ID=cds.MS.gene25987.t1;Parent=MS.gene25987.t1
chr3.3	exon	65693365	65693527	65693365	ID=MS.gene25987.t1.exon3;Parent=MS.gene25987.t1
chr3.3	CDS	65693365	65693527	65693365	ID=cds.MS.gene25987.t1;Parent=MS.gene25987.t1
chr3.3	exon	65693653	65693770	65693653	ID=MS.gene25987.t1.exon4;Parent=MS.gene25987.t1
chr3.3	CDS	65693653	65693770	65693653	ID=cds.MS.gene25987.t1;Parent=MS.gene25987.t1
chr3.3	exon	65694105	65694174	65694105	ID=MS.gene25987.t1.exon5;Parent=MS.gene25987.t1
chr3.3	CDS	65694105	65694174	65694105	ID=cds.MS.gene25987.t1;Parent=MS.gene25987.t1
chr3.3	exon	65694264	65694344	65694264	ID=MS.gene25987.t1.exon6;Parent=MS.gene25987.t1
chr3.3	CDS	65694264	65694344	65694264	ID=cds.MS.gene25987.t1;Parent=MS.gene25987.t1
chr3.3	exon	65694519	65694575	65694519	ID=MS.gene25987.t1.exon7;Parent=MS.gene25987.t1
chr3.3	CDS	65694519	65694575	65694519	ID=cds.MS.gene25987.t1;Parent=MS.gene25987.t1
chr3.3	exon	65694679	65694790	65694679	ID=MS.gene25987.t1.exon8;Parent=MS.gene25987.t1
chr3.3	CDS	65694679	65694790	65694679	ID=cds.MS.gene25987.t1;Parent=MS.gene25987.t1
chr3.3	exon	65695128	65695603	65695128	ID=MS.gene25987.t1.exon9;Parent=MS.gene25987.t1
chr3.3	CDS	65695128	65695603	65695128	ID=cds.MS.gene25987.t1;Parent=MS.gene25987.t1

Gene Sequence

>MS.gene25987

ATGGGTATCATCATCAACAACATCAAAATAAAGGGAGAAATTGAGAAGGTGAACGGGAAGGAATTGAGTTACAGTGAATTTGTTGATAGATATATGGACAAGAACAAACCAGTGGTGTTAACTGGATTAATGGATCATCATTGGAGAGCTTCCACTGATTGGGTTACACCTAATGGAAAACCTAATCTTCAATTTTTCTTCAATCATTTTGGTGCTTCCAAAGTTCAGGTATCAAAATTTCTACTTCTAAACATATTATAATTAGAGCTATATAATGATGCAAGTTGGAATCTTTTGAATGATTATAATTGATTAGGAAAAAGGGGTGGTAATAATGACATGATTCTATTGTGGGCTTTTGAAAATTTGGTTGTTTTGGGTAGAAATTTTTTGTGGTTCTTTATGGGTGATTGTACTTATACTATGTAAGATTGAGATTCCTTTAAGCTGATTGAAAATGGAAAATATGGGTGTCTATATATATGGTGATTGAAATTTTTTGTAATGGAAAGGTTGCAGATTGTGATACTAGAGATTTCACTGATCAAAAAAGAGAGGAGATGTTGGTCTCTGATTTCGTTGAACGTTGCCTTGAAGTTGAGGGTTCTGCAGTTCAGTGCAGTAATGAAAATGGTTCAAGTAATGGTGACTCTGTGTCTGTACCGTATTTGAAGGATTGGCATTTTGTCAAGGTATGGTGTTTACCTTTTCATAGTTGATTGTTGTAGATTTGTAGTGTCTGTTCTATGTTTATGAAGTATAGTTGTAAAAATTTCAATTTAAGGGGGTGCCAAACTTACTATCAAAGTTGAGGTTTTATGTTGTCTACTTTTTATTGATGTCATTGTTCATATCATCAAGCTTGATGATGCATGAACTTAAAACGCAGGGGTGACACGCGTCATGCATTTTGGATTACAAAATTCATTTATTTTTCCCAATTCCCATTCACTTTTGGTTCTTGGTCAAAGCTATTGTGCAAATGAATTTGCATTGATACTATTGATTTGCTTGAGTTTCCATTCTGTATTTTCAGACGTTTGTTTTTCTATTTGTTAGTAAGCAAGCTCCCTGTGTTATCAATCATTGAACAAAGAGAATCTTTAGTTAATCACACACCGTTACCCTGTTCAAATGGAATTTAATAATTTACCACAAAGTTTGTCCTTTTCAACATAGAGAATCATTTTGTTTCATCAGAGCCATGGTATGTTATATTATTGTCTGTACAAATGATGATTTGCCAATATATTTTTTCTAACTATTGCAGGAGTATCCAGAATATGTAGCATACATAACTCCAACGTACTTTTGTGATGATTGGCTTAACTTGTATCTTGACAACTTCAGAATGAATACTAGTTCTGACAGTGACCAGCAAAATAAGGAAATCTGCTGCTCTGACTATCGTTTTGTTTATATGGGAGTTAAAGGTGTAATTTTAGTTGTAATGAAATCTTCAAGTTGCAATGAATTTCAATTTCAAATGATTCTGCACTTTATATACAAAGACATGAACAACGCAACGGTAATTTTTTACTTTCACTTGTTCTGGCAGGATCTTGGACTCCTCTACATGCTGATGTTTTCAGGTCGTACAGCTGGTCAGCAAATGTCTGTGGAAAGAAGAGATGGTTTTTTCTAGATCCTTCCCAGTGCCATTTCGTGTTTGACAGGCATGAATGCATTTTCCTAATTGAAATTAATGACTTTTTTAAAAATAAAAAATAGATGTTGGGCATTGTGGTACAAAAAGATAGATTGGATTATCAATACATATTTGTTATTCAAATTACTTATGTACTCTGCATTTCTATGGTATTGACGTCCACCTTGACCAAAATTTCTATAGATGATATTCCCTCATACCTCCCATTTTCTTTCTTTGTTTTGGGCTTATCTCTCCAAATTTTTGTGTGTTTTTCAGAGGTAAAGGGTGAGGATGGAAGTGCTTTGATGTATTGTCTTTTTGCTTTCTGCAGAGCTAATTTTCTATAATCGTTGATTCAGGAATGCGAAAAGCTCTGTATATAATATCTTTGATGAAGTATCTGACTCAAAATACCCTGGTTTTGAAAAGGTAAAATTATAGCTTCCATCTTCTGATAATTCTAATGGTTCCAATAACATTTCCTGCTTCAGCCTTCAGTGAATTTGTAACTTATGCAGACTATTTGGTTAGAATGCACACAAGAAGCAGGGGAAATCATATTTGTTCCCAGTGGATGGTATCATCAAGTTCATAATTTGGTAAGTTCTGGTTCCGATGTTGATTGCCGTTATATTTATGCTTTATTTTCAAAGGCTTTCCTACAGGCTACGCCCCTTTATAGAAGAAAATATTTTGATGTTCCAAATATAATATTGATTGTACCAAGGAATTTGATATGATTTGATTTGATCGTATCTCTTTTGTTCTTTCAGGAGGATACAATATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGGTAAATTGAGCAATGCAATCAAGTAAATATTTGCGATTCAGTTAGACTCGAGGACTAACATAACTGTACTAAGTGTATCACATAACTTTTCATGCTATGACAGTGGAATTTACTTTTGAGCGACTACAATGAGGCCAAGGAATACATTGAAGACATCAAGGATATATGTGATGATTTTGAAGGCCTCTGCCAGCGCAACCTTGCTGCCAACACAGGTGCAGTACTGTGTATTATGAAATTTTCATATGCTGTTGCGGCAAACTAATTGGCAATAACATAATCACTGGTCATCTTATATTCATTATTTAAGGATTTTGAGATGATCAACTATGTATAGGGGTCACAGTATTTTTTTTTAATACTGATGTCACTAGTTTATATCATCTCAGTTACATTTTTTAGGTATGCATGCCTACTAGAGCAATTGACCTAACCGCATAAAACAACTTTTGTAGCAAGTTTAATAGAAACTACATTTTCTTGACATACTTTATTAGATTGAAGATGCTTTGACTGATTGCATAAGGTGAACTAACTTTAGTCTTGAAACAGGGATGAATTTTTTTGACTTCTTTACTTTCATTTCATACTTTGCCTTGGCCAACTTGGTGCTGCTTTGCTATATATATGGAAGAGATAGAAGCACCACTGAAAGTTTGTCAAGAGTAGCTCAGCATTTATCTTTAAATATTGCGTCTATTAGGAAGGTTGCATCAGATATGAAACACGTGCATGCTCTAGAAGGGACTCATGATTGCATCGTGGATATGAGAAAAACATTTGAAGATCCTAGGTTTTCTAAATTCTGCATGCAGGTGGGAAAAGCATATTTAATGATACATGAGCAATCCAATTTGTCCTCTGATTTTGAGAGTGCTTCATTGGTTGATTTGGTGGGACTCGGTGTTTTGAAAGCGTGCACTTCTTCTCAGATTTACACACCTGAAGACCTCATCAAATTTATAGACAATACCGTCGCAGAGCTGGGCGACCTTAACATGGAGTCATCTGTATTGCACGTTGCTTGA

Protein sequence

>MS.gene25987.t1

MGIIINNIKIKGEIEKVNGKELSYSEFVDRYMDKNKPVVLTGLMDHHWRASTDWVTPNGKPNLQFFFNHFGASKVQVADCDTRDFTDQKREEMLVSDFVERCLEVEGSAVQCSNENGSSNGDSVSVPYLKDWHFVKEYPEYVAYITPTYFCDDWLNLYLDNFRMNTSSDSDQQNKEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWFFLDPSQCHFVFDRNAKSSVYNIFDEVSDSKYPGFEKTIWLECTQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLSDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFFDFFTFISYFALANLVLLCYIYGRDRSTTESLSRVAQHLSLNIASIRKVASDMKHVHALEGTHDCIVDMRKTFEDPRFSKFCMQVGKAYLMIHEQSNLSSDFESASLVDLVGLGVLKACTSSQIYTPEDLIKFIDNTVAELGDLNMESSVLHVA