AlfalfaGEDB | MS.gene26285

M. sativa cultivar XinJiangDaYe / MS.gene26285

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26285.t1	XP_003615999.1	98.6	142	2	0	1	142	1	142	1.70E-74	288.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26285.t1	Q9AT61	84.7	111	16	1	30	140	36	145	1.8e-48	193.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26285.t1	G7KFM6	98.6	142	2	0	1	142	1	142	1.2e-74	288.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene26285.t1	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049611	MS.gene26285	0.80713	5.87E-50	-1.69E-46
MS.gene050380	MS.gene26285	0.806524	7.89E-50	-1.69E-46
MS.gene051552	MS.gene26285	0.815979	7.01E-52	-1.69E-46
MS.gene051996	MS.gene26285	0.808443	3.09E-50	-1.69E-46
MS.gene052223	MS.gene26285	0.800293	1.54E-48	-1.69E-46
MS.gene05234	MS.gene26285	0.808688	2.74E-50	-1.69E-46
MS.gene05240	MS.gene26285	0.811161	8.04E-51	-1.69E-46
MS.gene053421	MS.gene26285	0.823977	1.04E-53	-1.69E-46
MS.gene054290	MS.gene26285	0.822513	2.28E-53	-1.69E-46
MS.gene054742	MS.gene26285	0.84817	7.27E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26285.t1	MTR_5g075020	98.592	142	2	0	1	142	1	142	6.36e-105	299
MS.gene26285.t1	MTR_5g075020	99.242	132	1	0	11	142	7	138	4.04e-97	279
MS.gene26285.t1	MTR_3g094690	76.087	138	25	3	10	141	6	141	2.19e-72	216
MS.gene26285.t1	MTR_5g083960	79.389	131	22	3	12	142	9	134	5.77e-70	209
MS.gene26285.t1	MTR_3g094690	75.362	138	25	4	10	141	6	140	7.16e-70	210
MS.gene26285.t1	MTR_2g068760	67.647	102	33	0	39	140	5	106	1.14e-48	154
MS.gene26285.t1	MTR_4g083680	72.632	95	26	0	46	140	14	108	2.39e-48	153
MS.gene26285.t1	MTR_5g083230	71.579	95	27	0	46	140	5	99	3.23e-48	153
MS.gene26285.t1	MTR_3g071590	68.367	98	31	0	43	140	4	101	2.13e-47	150
MS.gene26285.t1	MTR_2g093310	63.918	97	35	0	44	140	30	126	1.38e-43	142

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26285.t1	AT2G30340	84.211	114	16	2	28	140	33	145	2.52e-65	200
MS.gene26285.t1	AT2G30340	84.211	114	16	2	28	140	34	146	2.57e-65	200
MS.gene26285.t1	AT2G40470	73.723	137	30	4	10	142	6	140	8.45e-59	182
MS.gene26285.t1	AT2G40470	81.416	113	19	1	30	142	5	115	1.25e-57	178
MS.gene26285.t1	AT2G30130	69.474	95	29	0	46	140	7	101	6.88e-46	148
MS.gene26285.t1	AT1G31320	76.136	88	21	0	46	133	12	99	1.21e-45	146
MS.gene26285.t1	AT1G07900	63.918	97	35	0	44	140	30	126	1.24e-43	142
MS.gene26285.t1	AT2G28500	62.887	97	36	0	44	140	52	148	4.93e-43	142
MS.gene26285.t1	AT3G27650	64.948	97	34	0	44	140	36	132	2.75e-42	137
MS.gene26285.t1	AT1G16530	62.245	98	36	1	44	140	11	108	3.58e-42	137

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Find 24 sgRNAs with CRISPR-Local

Find 51 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATCAACAAGCATGTT+TGG	0.327582	5.4:+59341373	None:intergenic
AAACTTCTTCTCAAATGGGA+AGG	0.578669	5.4:+59341657	MS.gene26285:CDS
AATAGCTTACATGCAGCACA+AGG	0.568241	5.4:-59341728	None:intergenic
ACAAGGGGTTACTGTGTTTA+AGG	0.163285	5.4:-59341711	None:intergenic
AGATCCTGTTTATGGATGCA+TGG	0.578296	5.4:+59342204	MS.gene26285:CDS
AGCAGATGCAGCAAATAGTA+TGG	0.405210	5.4:+59342156	MS.gene26285:CDS
AGGTTAAGAGATCCTGTTTA+TGG	0.207855	5.4:+59342196	MS.gene26285:CDS
ATAGCTTACATGCAGCACAA+GGG	0.685250	5.4:-59341727	None:intergenic
ATCTTTATGGTCCAACTTCT+GGG	0.351664	5.4:+59341684	MS.gene26285:CDS
ATGGGAAGGAAGCATCTTTA+TGG	0.328269	5.4:+59341671	MS.gene26285:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAGCAAAAATCAACTCAG+AGG	+	chr5.4:59341631-59341650	MS.gene26285:CDS	30.0%
ATAGCAAAAATCAACTCAGA+GGG	+	chr5.4:59341632-59341651	MS.gene26285:CDS	30.0%
CAATGTCTCTAAATTGCTAT+TGG	+	chr5.4:59341847-59341866	MS.gene26285:CDS	30.0%
GTGAAAAATAAGGAGAGAAA+GGG	-	chr5.4:59341778-59341797	None:intergenic	30.0%
TGGTTTATGAAGCTAATTTG+AGG	+	chr5.4:59342176-59342195	MS.gene26285:CDS	30.0%
AAACTTCTTCTCAAATGGGA+AGG	+	chr5.4:59341657-59341676	MS.gene26285:CDS	35.0%
AGGTTAAGAGATCCTGTTTA+TGG	+	chr5.4:59342196-59342215	MS.gene26285:CDS	35.0%
ATCTTTATGGTCCAACTTCT+GGG	+	chr5.4:59341684-59341703	MS.gene26285:CDS	35.0%
GGAGAAACTTCTTCTCAAAT+GGG	+	chr5.4:59341653-59341672	MS.gene26285:CDS	35.0%
GGTGAAAAATAAGGAGAGAA+AGG	-	chr5.4:59341779-59341798	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	59341388	59342282	59341388	ID=MS.gene26285
chr5.4	mRNA	59341388	59342282	59341388	ID=MS.gene26285.t1;Parent=MS.gene26285
chr5.4	exon	59341388	59341415	59341388	ID=MS.gene26285.t1.exon1;Parent=MS.gene26285.t1
chr5.4	CDS	59341388	59341415	59341388	ID=cds.MS.gene26285.t1;Parent=MS.gene26285.t1
chr5.4	exon	59341618	59341868	59341618	ID=MS.gene26285.t1.exon2;Parent=MS.gene26285.t1
chr5.4	CDS	59341618	59341868	59341618	ID=cds.MS.gene26285.t1;Parent=MS.gene26285.t1
chr5.4	exon	59342136	59342282	59342136	ID=MS.gene26285.t1.exon3;Parent=MS.gene26285.t1
chr5.4	CDS	59342136	59342282	59342136	ID=cds.MS.gene26285.t1;Parent=MS.gene26285.t1

Gene Sequence

>MS.gene26285

ATGTTTGGATGTCCAGAGACAGTGACAGGTAAATATTAGCAAATACACATAATTTCCTAGCTCCCTTTTCATTTCTTACATAAAAAAAACAAAAAAAAATTATTCATGAGATTTTTACTATGTTCTTGGTCTCTACCTCTTCTAATCATGCACTAAGCAATATATATATTTCTCAACAAGGTTAAGGATACTATTTAACATGCTATTTTTGTGTTTACTTTTTGCCAAAGAAAGATTAGATGAAATAGCAAAAATCAACTCAGAGGGAGAAACTTCTTCTCAAATGGGAAGGAAGCATCTTTATGGTCCAACTTCTGGGACAACCTTAAACACAGTAACCCCTTGTGCTGCATGTAAGCTATTGAGAAGAAGATGTGCTGAGGAATGCCCTTTCTCTCCTTATTTTTCACCACATGAGCCTCAAAAATTTGCAGCTGTTCATAAAGTTTTTGGTGCTAGCAATGTCTCTAAATTGCTATTGGTTTGTGCCTAACTCATAACTCAAAATTAGTTACTTTTATTATCTTCAATAACTTATAAGTAATAAATCTAACATCGATACACGGTCGGTTAGGTAAAAACTTTTACACTACGAACAAATCACAATCAGTCATATGTCCGACTTTCAGAAATAGTTATGACCAAGTCAATAGTATTTACTGATCTAACGATTATAATTGGTTTGCAGGGTAAAAAAGATAAGTAATAACTAATGATTTGCTGTCAACTTTGAAATATTTTTTTTTAGGAGGTACCTGAAGGACAAAGAGCAGATGCAGCAAATAGTATGGTTTATGAAGCTAATTTGAGGTTAAGAGATCCTGTTTATGGATGCATGGGTGCAATATCATCATTACAACAACAAATCCAATCTTTACAAGCAGAACTACATGCA

Protein sequence

>MS.gene26285.t1

MFGCPETVTERLDEIAKINSEGETSSQMGRKHLYGPTSGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLLEVPEGQRADAANSMVYEANLRLRDPVYGCMGAISSLQQQIQSLQAELHA