Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26285.t1 | XP_003615999.1 | 98.6 | 142 | 2 | 0 | 1 | 142 | 1 | 142 | 1.70E-74 | 288.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26285.t1 | Q9AT61 | 84.7 | 111 | 16 | 1 | 30 | 140 | 36 | 145 | 1.8e-48 | 193.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26285.t1 | G7KFM6 | 98.6 | 142 | 2 | 0 | 1 | 142 | 1 | 142 | 1.2e-74 | 288.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene26285.t1 | TF | LOB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049611 | MS.gene26285 | 0.80713 | 5.87E-50 | -1.69E-46 |
MS.gene050380 | MS.gene26285 | 0.806524 | 7.89E-50 | -1.69E-46 |
MS.gene051552 | MS.gene26285 | 0.815979 | 7.01E-52 | -1.69E-46 |
MS.gene051996 | MS.gene26285 | 0.808443 | 3.09E-50 | -1.69E-46 |
MS.gene052223 | MS.gene26285 | 0.800293 | 1.54E-48 | -1.69E-46 |
MS.gene05234 | MS.gene26285 | 0.808688 | 2.74E-50 | -1.69E-46 |
MS.gene05240 | MS.gene26285 | 0.811161 | 8.04E-51 | -1.69E-46 |
MS.gene053421 | MS.gene26285 | 0.823977 | 1.04E-53 | -1.69E-46 |
MS.gene054290 | MS.gene26285 | 0.822513 | 2.28E-53 | -1.69E-46 |
MS.gene054742 | MS.gene26285 | 0.84817 | 7.27E-60 | -1.69E-46 |
MS.gene055206 | MS.gene26285 | -0.810886 | 9.22E-51 | -1.69E-46 |
MS.gene056330 | MS.gene26285 | 0.833588 | 4.89E-56 | -1.69E-46 |
MS.gene056920 | MS.gene26285 | 0.811277 | 7.59E-51 | -1.69E-46 |
MS.gene056923 | MS.gene26285 | 0.813956 | 1.97E-51 | -1.69E-46 |
MS.gene056924 | MS.gene26285 | 0.82416 | 9.38E-54 | -1.69E-46 |
MS.gene056925 | MS.gene26285 | 0.804359 | 2.24E-49 | -1.69E-46 |
MS.gene057544 | MS.gene26285 | 0.822035 | 2.94E-53 | -1.69E-46 |
MS.gene058067 | MS.gene26285 | 0.808233 | 3.43E-50 | -1.69E-46 |
MS.gene058376 | MS.gene26285 | -0.80021 | 1.60E-48 | -1.69E-46 |
MS.gene058418 | MS.gene26285 | 0.809168 | 2.16E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26285.t1 | MTR_5g075020 | 98.592 | 142 | 2 | 0 | 1 | 142 | 1 | 142 | 6.36e-105 | 299 |
MS.gene26285.t1 | MTR_5g075020 | 99.242 | 132 | 1 | 0 | 11 | 142 | 7 | 138 | 4.04e-97 | 279 |
MS.gene26285.t1 | MTR_3g094690 | 76.087 | 138 | 25 | 3 | 10 | 141 | 6 | 141 | 2.19e-72 | 216 |
MS.gene26285.t1 | MTR_5g083960 | 79.389 | 131 | 22 | 3 | 12 | 142 | 9 | 134 | 5.77e-70 | 209 |
MS.gene26285.t1 | MTR_3g094690 | 75.362 | 138 | 25 | 4 | 10 | 141 | 6 | 140 | 7.16e-70 | 210 |
MS.gene26285.t1 | MTR_2g068760 | 67.647 | 102 | 33 | 0 | 39 | 140 | 5 | 106 | 1.14e-48 | 154 |
MS.gene26285.t1 | MTR_4g083680 | 72.632 | 95 | 26 | 0 | 46 | 140 | 14 | 108 | 2.39e-48 | 153 |
MS.gene26285.t1 | MTR_5g083230 | 71.579 | 95 | 27 | 0 | 46 | 140 | 5 | 99 | 3.23e-48 | 153 |
MS.gene26285.t1 | MTR_3g071590 | 68.367 | 98 | 31 | 0 | 43 | 140 | 4 | 101 | 2.13e-47 | 150 |
MS.gene26285.t1 | MTR_2g093310 | 63.918 | 97 | 35 | 0 | 44 | 140 | 30 | 126 | 1.38e-43 | 142 |
MS.gene26285.t1 | MTR_7g033800 | 67.010 | 97 | 32 | 0 | 46 | 142 | 10 | 106 | 3.54e-43 | 140 |
MS.gene26285.t1 | MTR_3g031660 | 64.211 | 95 | 34 | 0 | 46 | 140 | 6 | 100 | 3.80e-43 | 140 |
MS.gene26285.t1 | MTR_4g060950 | 61.111 | 108 | 40 | 2 | 35 | 140 | 11 | 118 | 8.78e-43 | 140 |
MS.gene26285.t1 | MTR_4g105170 | 67.010 | 97 | 32 | 0 | 46 | 142 | 10 | 106 | 9.75e-43 | 140 |
MS.gene26285.t1 | MTR_3g077240 | 64.948 | 97 | 34 | 0 | 46 | 142 | 9 | 105 | 4.41e-42 | 138 |
MS.gene26285.t1 | MTR_6g005070 | 63.918 | 97 | 35 | 0 | 46 | 142 | 8 | 104 | 4.65e-42 | 136 |
MS.gene26285.t1 | MTR_3g073690 | 62.887 | 97 | 36 | 0 | 46 | 142 | 8 | 104 | 1.03e-40 | 135 |
MS.gene26285.t1 | MTR_1g095850 | 64.516 | 93 | 33 | 0 | 48 | 140 | 73 | 165 | 1.23e-40 | 135 |
MS.gene26285.t1 | MTR_3g071420 | 58.879 | 107 | 38 | 1 | 34 | 140 | 7 | 107 | 1.49e-40 | 134 |
MS.gene26285.t1 | MTR_7g074990 | 67.368 | 95 | 30 | 1 | 47 | 140 | 20 | 114 | 1.64e-40 | 135 |
MS.gene26285.t1 | MTR_6g005080 | 61.856 | 97 | 37 | 0 | 46 | 142 | 9 | 105 | 2.72e-40 | 132 |
MS.gene26285.t1 | MTR_5g017950 | 62.500 | 96 | 36 | 0 | 46 | 141 | 7 | 102 | 2.95e-39 | 134 |
MS.gene26285.t1 | MTR_5g083010 | 57.944 | 107 | 39 | 1 | 34 | 140 | 4 | 104 | 3.53e-39 | 130 |
MS.gene26285.t1 | MTR_7g096530 | 57.143 | 105 | 44 | 1 | 37 | 140 | 4 | 108 | 2.40e-38 | 129 |
MS.gene26285.t1 | MTR_3g452660 | 60.000 | 95 | 38 | 0 | 46 | 140 | 6 | 100 | 1.94e-37 | 129 |
MS.gene26285.t1 | MTR_8g040900 | 65.854 | 82 | 28 | 0 | 46 | 127 | 6 | 87 | 5.98e-37 | 126 |
MS.gene26285.t1 | MTR_7g028905 | 56.989 | 93 | 40 | 0 | 48 | 140 | 6 | 98 | 1.51e-35 | 119 |
MS.gene26285.t1 | MTR_1g070220 | 58.947 | 95 | 38 | 1 | 47 | 140 | 15 | 109 | 7.41e-35 | 120 |
MS.gene26285.t1 | MTR_8g036105 | 55.140 | 107 | 47 | 1 | 35 | 140 | 6 | 112 | 3.86e-34 | 119 |
MS.gene26285.t1 | MTR_8g036085 | 61.053 | 95 | 36 | 1 | 47 | 140 | 23 | 117 | 7.30e-34 | 118 |
MS.gene26285.t1 | MTR_6g027710 | 55.670 | 97 | 42 | 1 | 45 | 140 | 38 | 134 | 3.90e-33 | 116 |
MS.gene26285.t1 | MTR_1g070205 | 57.292 | 96 | 38 | 2 | 47 | 140 | 12 | 106 | 1.98e-32 | 115 |
MS.gene26285.t1 | MTR_5g093010 | 53.763 | 93 | 43 | 0 | 48 | 140 | 6 | 98 | 2.80e-32 | 112 |
MS.gene26285.t1 | MTR_7g096610 | 56.701 | 97 | 39 | 2 | 46 | 140 | 7 | 102 | 7.17e-32 | 113 |
MS.gene26285.t1 | MTR_5g080470 | 53.125 | 96 | 44 | 1 | 46 | 140 | 6 | 101 | 1.73e-31 | 111 |
MS.gene26285.t1 | MTR_8g079660 | 48.958 | 96 | 49 | 0 | 45 | 140 | 6 | 101 | 3.09e-28 | 104 |
MS.gene26285.t1 | MTR_7g075230 | 54.639 | 97 | 41 | 2 | 47 | 140 | 12 | 108 | 4.41e-28 | 102 |
MS.gene26285.t1 | MTR_6g027700 | 47.368 | 95 | 49 | 1 | 47 | 140 | 7 | 101 | 2.62e-27 | 101 |
MS.gene26285.t1 | MTR_8g079580 | 48.454 | 97 | 49 | 1 | 45 | 140 | 6 | 102 | 9.59e-25 | 95.1 |
MS.gene26285.t1 | MTR_4g107450 | 44.444 | 99 | 55 | 0 | 44 | 142 | 7 | 105 | 1.66e-24 | 95.9 |
MS.gene26285.t1 | MTR_6g011250 | 42.105 | 95 | 54 | 1 | 48 | 141 | 10 | 104 | 3.09e-24 | 92.4 |
MS.gene26285.t1 | MTR_8g079620 | 43.750 | 96 | 54 | 0 | 45 | 140 | 6 | 101 | 5.50e-24 | 93.2 |
MS.gene26285.t1 | MTR_6g011230 | 39.000 | 100 | 61 | 0 | 43 | 142 | 7 | 106 | 3.58e-23 | 90.1 |
MS.gene26285.t1 | MTR_6g011200 | 39.806 | 103 | 58 | 2 | 42 | 140 | 1 | 103 | 8.05e-23 | 90.5 |
MS.gene26285.t1 | MTR_2g100020 | 41.414 | 99 | 56 | 2 | 44 | 141 | 16 | 113 | 4.56e-21 | 86.3 |
MS.gene26285.t1 | MTR_8g017090 | 39.796 | 98 | 57 | 2 | 44 | 140 | 9 | 105 | 7.84e-20 | 83.6 |
MS.gene26285.t1 | MTR_5g085390 | 35.922 | 103 | 62 | 2 | 42 | 140 | 1 | 103 | 6.56e-19 | 79.7 |
MS.gene26285.t1 | MTR_4g099230 | 40.000 | 80 | 47 | 1 | 48 | 126 | 3 | 82 | 5.44e-18 | 75.9 |
MS.gene26285.t1 | MTR_4g088035 | 34.091 | 88 | 58 | 0 | 46 | 133 | 5 | 92 | 1.06e-14 | 68.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26285.t1 | AT2G30340 | 84.211 | 114 | 16 | 2 | 28 | 140 | 33 | 145 | 2.52e-65 | 200 |
MS.gene26285.t1 | AT2G30340 | 84.211 | 114 | 16 | 2 | 28 | 140 | 34 | 146 | 2.57e-65 | 200 |
MS.gene26285.t1 | AT2G40470 | 73.723 | 137 | 30 | 4 | 10 | 142 | 6 | 140 | 8.45e-59 | 182 |
MS.gene26285.t1 | AT2G40470 | 81.416 | 113 | 19 | 1 | 30 | 142 | 5 | 115 | 1.25e-57 | 178 |
MS.gene26285.t1 | AT2G30130 | 69.474 | 95 | 29 | 0 | 46 | 140 | 7 | 101 | 6.88e-46 | 148 |
MS.gene26285.t1 | AT1G31320 | 76.136 | 88 | 21 | 0 | 46 | 133 | 12 | 99 | 1.21e-45 | 146 |
MS.gene26285.t1 | AT1G07900 | 63.918 | 97 | 35 | 0 | 44 | 140 | 30 | 126 | 1.24e-43 | 142 |
MS.gene26285.t1 | AT2G28500 | 62.887 | 97 | 36 | 0 | 44 | 140 | 52 | 148 | 4.93e-43 | 142 |
MS.gene26285.t1 | AT3G27650 | 64.948 | 97 | 34 | 0 | 44 | 140 | 36 | 132 | 2.75e-42 | 137 |
MS.gene26285.t1 | AT1G16530 | 62.245 | 98 | 36 | 1 | 44 | 140 | 11 | 108 | 3.58e-42 | 137 |
MS.gene26285.t1 | AT5G63090 | 64.948 | 97 | 34 | 0 | 46 | 142 | 10 | 106 | 4.21e-41 | 135 |
MS.gene26285.t1 | AT5G63090 | 64.948 | 97 | 34 | 0 | 46 | 142 | 10 | 106 | 4.21e-41 | 135 |
MS.gene26285.t1 | AT5G63090 | 64.948 | 97 | 34 | 0 | 46 | 142 | 10 | 106 | 4.21e-41 | 135 |
MS.gene26285.t1 | AT5G63090 | 64.948 | 97 | 34 | 0 | 46 | 142 | 10 | 106 | 4.21e-41 | 135 |
MS.gene26285.t1 | AT2G23660 | 61.053 | 95 | 37 | 0 | 46 | 140 | 4 | 98 | 1.09e-39 | 135 |
MS.gene26285.t1 | AT2G23660 | 61.053 | 95 | 37 | 0 | 46 | 140 | 4 | 98 | 1.09e-39 | 135 |
MS.gene26285.t1 | AT2G23660 | 61.053 | 95 | 37 | 0 | 46 | 140 | 4 | 98 | 1.09e-39 | 135 |
MS.gene26285.t1 | AT5G66870 | 63.158 | 95 | 35 | 0 | 46 | 140 | 6 | 100 | 1.99e-39 | 135 |
MS.gene26285.t1 | AT1G65620 | 68.235 | 85 | 27 | 0 | 43 | 127 | 5 | 89 | 1.60e-38 | 129 |
MS.gene26285.t1 | AT1G65620 | 68.235 | 85 | 27 | 0 | 43 | 127 | 5 | 89 | 1.60e-38 | 129 |
MS.gene26285.t1 | AT1G65620 | 68.235 | 85 | 27 | 0 | 43 | 127 | 5 | 89 | 1.60e-38 | 129 |
MS.gene26285.t1 | AT1G65620 | 68.235 | 85 | 27 | 0 | 43 | 127 | 5 | 89 | 1.60e-38 | 129 |
MS.gene26285.t1 | AT1G65620 | 68.235 | 85 | 27 | 0 | 43 | 127 | 5 | 89 | 1.60e-38 | 129 |
MS.gene26285.t1 | AT3G11090 | 63.441 | 93 | 34 | 0 | 48 | 140 | 12 | 104 | 8.07e-38 | 126 |
MS.gene26285.t1 | AT3G26620 | 58.065 | 93 | 39 | 0 | 48 | 140 | 6 | 98 | 3.69e-37 | 123 |
MS.gene26285.t1 | AT3G26660 | 58.065 | 93 | 39 | 0 | 48 | 140 | 6 | 98 | 4.12e-37 | 123 |
MS.gene26285.t1 | AT2G42430 | 56.731 | 104 | 44 | 1 | 38 | 140 | 6 | 109 | 1.03e-36 | 126 |
MS.gene26285.t1 | AT4G00210 | 56.731 | 104 | 44 | 1 | 38 | 140 | 2 | 105 | 5.74e-36 | 123 |
MS.gene26285.t1 | AT3G03760 | 59.375 | 96 | 38 | 1 | 46 | 140 | 50 | 145 | 5.32e-34 | 120 |
MS.gene26285.t1 | AT5G06080 | 57.292 | 96 | 40 | 1 | 46 | 140 | 6 | 101 | 3.63e-33 | 115 |
MS.gene26285.t1 | AT2G31310 | 55.208 | 96 | 42 | 1 | 46 | 140 | 6 | 101 | 4.78e-33 | 115 |
MS.gene26285.t1 | AT3G58190 | 58.333 | 96 | 37 | 2 | 47 | 140 | 11 | 105 | 6.96e-33 | 115 |
MS.gene26285.t1 | AT4G00220 | 63.043 | 92 | 33 | 1 | 50 | 140 | 20 | 111 | 7.58e-33 | 115 |
MS.gene26285.t1 | AT2G45420 | 57.609 | 92 | 38 | 1 | 50 | 140 | 40 | 131 | 1.12e-31 | 114 |
MS.gene26285.t1 | AT2G42440 | 54.639 | 97 | 41 | 2 | 46 | 140 | 6 | 101 | 8.32e-31 | 111 |
MS.gene26285.t1 | AT2G45410 | 56.522 | 92 | 39 | 1 | 50 | 140 | 19 | 110 | 1.44e-30 | 108 |
MS.gene26285.t1 | AT3G50510 | 47.368 | 95 | 50 | 0 | 46 | 140 | 11 | 105 | 4.58e-26 | 97.8 |
MS.gene26285.t1 | AT3G50510 | 47.368 | 95 | 50 | 0 | 46 | 140 | 11 | 105 | 4.58e-26 | 97.8 |
MS.gene26285.t1 | AT3G47870 | 40.909 | 110 | 58 | 1 | 33 | 142 | 29 | 131 | 3.36e-24 | 95.5 |
MS.gene26285.t1 | AT5G35900 | 37.113 | 97 | 61 | 0 | 46 | 142 | 4 | 100 | 1.87e-20 | 83.2 |
MS.gene26285.t1 | AT1G72980 | 39.796 | 98 | 59 | 0 | 44 | 141 | 10 | 107 | 2.31e-20 | 83.2 |
MS.gene26285.t1 | AT1G06280 | 39.362 | 94 | 57 | 0 | 48 | 141 | 25 | 118 | 3.26e-20 | 82.8 |
MS.gene26285.t1 | AT3G13850 | 38.710 | 93 | 57 | 0 | 48 | 140 | 37 | 129 | 1.45e-19 | 82.0 |
MS.gene26285.t1 | AT2G19820 | 34.831 | 89 | 57 | 1 | 47 | 134 | 12 | 100 | 7.13e-15 | 67.0 |
MS.gene26285.t1 | AT4G22700 | 39.216 | 102 | 51 | 4 | 48 | 140 | 6 | 105 | 8.17e-15 | 68.2 |
MS.gene26285.t1 | AT5G15060 | 40.260 | 77 | 42 | 2 | 45 | 118 | 15 | 90 | 8.24e-12 | 59.3 |
MS.gene26285.t1 | AT1G36000 | 30.000 | 100 | 68 | 2 | 42 | 140 | 4 | 102 | 6.58e-11 | 56.6 |
MS.gene26285.t1 | AT2G19510 | 27.368 | 95 | 69 | 0 | 47 | 141 | 9 | 103 | 9.44e-11 | 55.8 |
Find 24 sgRNAs with CRISPR-Local
Find 51 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAAGGGGTTACTGTGTTTA+AGG | 0.163285 | 5.4:-59341711 | None:intergenic |
AGGTTAAGAGATCCTGTTTA+TGG | 0.207855 | 5.4:+59342196 | MS.gene26285:CDS |
CATCTTTATGGTCCAACTTC+TGG | 0.211009 | 5.4:+59341683 | MS.gene26285:CDS |
GCATCTGCTCTTTGTCCTTC+AGG | 0.259282 | 5.4:-59342142 | None:intergenic |
CAATGTCTCTAAATTGCTAT+TGG | 0.302262 | 5.4:+59341847 | MS.gene26285:CDS |
AAACAATCAACAAGCATGTT+TGG | 0.327582 | 5.4:+59341373 | None:intergenic |
ATGGGAAGGAAGCATCTTTA+TGG | 0.328269 | 5.4:+59341671 | MS.gene26285:CDS |
GTAGTTCTGCTTGTAAAGAT+TGG | 0.343171 | 5.4:-59342255 | None:intergenic |
GGGAGAAACTTCTTCTCAAA+TGG | 0.345005 | 5.4:+59341652 | MS.gene26285:CDS |
ATCTTTATGGTCCAACTTCT+GGG | 0.351664 | 5.4:+59341684 | MS.gene26285:CDS |
AGCAGATGCAGCAAATAGTA+TGG | 0.405210 | 5.4:+59342156 | MS.gene26285:CDS |
TATTTACCTGTCACTGTCTC+TGG | 0.409777 | 5.4:-59341400 | None:intergenic |
GCACCCATGCATCCATAAAC+AGG | 0.433076 | 5.4:-59342208 | None:intergenic |
TTTAAGGTTGTCCCAGAAGT+TGG | 0.446561 | 5.4:-59341695 | None:intergenic |
GGAGAAACTTCTTCTCAAAT+GGG | 0.481100 | 5.4:+59341653 | MS.gene26285:CDS |
TGGTTTATGAAGCTAATTTG+AGG | 0.520361 | 5.4:+59342176 | MS.gene26285:CDS |
GGATGTCCAGAGACAGTGAC+AGG | 0.566988 | 5.4:+59341394 | MS.gene26285:CDS |
AATAGCTTACATGCAGCACA+AGG | 0.568241 | 5.4:-59341728 | None:intergenic |
AGATCCTGTTTATGGATGCA+TGG | 0.578296 | 5.4:+59342204 | MS.gene26285:CDS |
AAACTTCTTCTCAAATGGGA+AGG | 0.578669 | 5.4:+59341657 | MS.gene26285:CDS |
TAGCTTACATGCAGCACAAG+GGG | 0.625764 | 5.4:-59341726 | None:intergenic |
GATCCTGTTTATGGATGCAT+GGG | 0.637525 | 5.4:+59342205 | MS.gene26285:CDS |
ATTGAGAAGAAGATGTGCTG+AGG | 0.667195 | 5.4:+59341748 | MS.gene26285:CDS |
ATAGCTTACATGCAGCACAA+GGG | 0.685250 | 5.4:-59341727 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ACTTTGAAATATTTTTTTTT+AGG | + | chr5.4:59342114-59342133 | MS.gene26285:intron | 10.0% |
!! | AATATATATATTTCTCAACA+AGG | + | chr5.4:59341546-59341565 | MS.gene26285:intron | 15.0% |
!!! | TTGAAATATTTTTTTTTAGG+AGG | + | chr5.4:59342117-59342136 | MS.gene26285:intron | 15.0% |
!!! | TTTTATGTAAGAAATGAAAA+GGG | - | chr5.4:59341453-59341472 | None:intergenic | 15.0% |
!!! | TTTTTATGTAAGAAATGAAA+AGG | - | chr5.4:59341454-59341473 | None:intergenic | 15.0% |
!! | TATTTCATCTAATCTTTCTT+TGG | - | chr5.4:59341615-59341634 | None:intergenic | 20.0% |
! | ACTGATCTAACGATTATAAT+TGG | + | chr5.4:59342046-59342065 | MS.gene26285:intron | 25.0% |
! | ATAAATCTAACATCGATACA+CGG | + | chr5.4:59341931-59341950 | MS.gene26285:intron | 25.0% |
! | TATATTTCTCAACAAGGTTA+AGG | + | chr5.4:59341552-59341571 | MS.gene26285:intron | 25.0% |
!! | ATCAGTAAATACTATTGACT+TGG | - | chr5.4:59342032-59342051 | None:intergenic | 25.0% |
!! | TGAGATTTTTACTATGTTCT+TGG | + | chr5.4:59341494-59341513 | MS.gene26285:intron | 25.0% |
!!! | CTAATTTTGAGTTATGAGTT+AGG | - | chr5.4:59341879-59341898 | None:intergenic | 25.0% |
!!! | TCATAACTATTTCTGAAAGT+CGG | - | chr5.4:59342009-59342028 | None:intergenic | 25.0% |
AATAGCAAAAATCAACTCAG+AGG | + | chr5.4:59341631-59341650 | MS.gene26285:CDS | 30.0% | |
ATAGCAAAAATCAACTCAGA+GGG | + | chr5.4:59341632-59341651 | MS.gene26285:CDS | 30.0% | |
CAATGTCTCTAAATTGCTAT+TGG | + | chr5.4:59341847-59341866 | MS.gene26285:CDS | 30.0% | |
GTGAAAAATAAGGAGAGAAA+GGG | - | chr5.4:59341778-59341797 | None:intergenic | 30.0% | |
TGGTTTATGAAGCTAATTTG+AGG | + | chr5.4:59342176-59342195 | MS.gene26285:CDS | 30.0% | |
!! | AACGATTATAATTGGTTTGC+AGG | + | chr5.4:59342054-59342073 | MS.gene26285:intron | 30.0% |
!! | ACGATTATAATTGGTTTGCA+GGG | + | chr5.4:59342055-59342074 | MS.gene26285:intron | 30.0% |
AAACTTCTTCTCAAATGGGA+AGG | + | chr5.4:59341657-59341676 | MS.gene26285:CDS | 35.0% | |
AGGTTAAGAGATCCTGTTTA+TGG | + | chr5.4:59342196-59342215 | MS.gene26285:CDS | 35.0% | |
ATCTTTATGGTCCAACTTCT+GGG | + | chr5.4:59341684-59341703 | MS.gene26285:CDS | 35.0% | |
GGAGAAACTTCTTCTCAAAT+GGG | + | chr5.4:59341653-59341672 | MS.gene26285:CDS | 35.0% | |
GGTGAAAAATAAGGAGAGAA+AGG | - | chr5.4:59341779-59341798 | None:intergenic | 35.0% | |
TAAGAAATGAAAAGGGAGCT+AGG | - | chr5.4:59341446-59341465 | None:intergenic | 35.0% | |
! | GCAGCTGTTCATAAAGTTTT+TGG | + | chr5.4:59341818-59341837 | MS.gene26285:CDS | 35.0% |
! | GTAGTTCTGCTTGTAAAGAT+TGG | - | chr5.4:59342258-59342277 | None:intergenic | 35.0% |
! | TGAACAGCTGCAAATTTTTG+AGG | - | chr5.4:59341809-59341828 | None:intergenic | 35.0% |
!!! | TTTTTTTAGGAGGTACCTGA+AGG | + | chr5.4:59342127-59342146 | MS.gene26285:intron | 35.0% |
AATAGCTTACATGCAGCACA+AGG | - | chr5.4:59341731-59341750 | None:intergenic | 40.0% | |
ACAAGGGGTTACTGTGTTTA+AGG | - | chr5.4:59341714-59341733 | None:intergenic | 40.0% | |
AGATCCTGTTTATGGATGCA+TGG | + | chr5.4:59342204-59342223 | MS.gene26285:CDS | 40.0% | |
AGCAGATGCAGCAAATAGTA+TGG | + | chr5.4:59342156-59342175 | MS.gene26285:CDS | 40.0% | |
ATAGCTTACATGCAGCACAA+GGG | - | chr5.4:59341730-59341749 | None:intergenic | 40.0% | |
ATCTAACATCGATACACGGT+CGG | + | chr5.4:59341935-59341954 | MS.gene26285:intron | 40.0% | |
ATTGAGAAGAAGATGTGCTG+AGG | + | chr5.4:59341748-59341767 | MS.gene26285:CDS | 40.0% | |
CATCTTTATGGTCCAACTTC+TGG | + | chr5.4:59341683-59341702 | MS.gene26285:CDS | 40.0% | |
GATCCTGTTTATGGATGCAT+GGG | + | chr5.4:59342205-59342224 | MS.gene26285:CDS | 40.0% | |
GCTTAGTGCATGATTAGAAG+AGG | - | chr5.4:59341526-59341545 | None:intergenic | 40.0% | |
GGCTCATGTGGTGAAAAATA+AGG | - | chr5.4:59341788-59341807 | None:intergenic | 40.0% | |
GGGAGAAACTTCTTCTCAAA+TGG | + | chr5.4:59341652-59341671 | MS.gene26285:CDS | 40.0% | |
TATTTACCTGTCACTGTCTC+TGG | - | chr5.4:59341403-59341422 | None:intergenic | 40.0% | |
! | TTTAAGGTTGTCCCAGAAGT+TGG | - | chr5.4:59341698-59341717 | None:intergenic | 40.0% |
!! | ATGGGAAGGAAGCATCTTTA+TGG | + | chr5.4:59341671-59341690 | MS.gene26285:CDS | 40.0% |
!!! | GCAAATTTTTGAGGCTCATG+TGG | - | chr5.4:59341800-59341819 | None:intergenic | 40.0% |
TAGCTTACATGCAGCACAAG+GGG | - | chr5.4:59341729-59341748 | None:intergenic | 45.0% | |
ACATCGATACACGGTCGGTT+AGG | + | chr5.4:59341940-59341959 | MS.gene26285:intron | 50.0% | |
GCACCCATGCATCCATAAAC+AGG | - | chr5.4:59342211-59342230 | None:intergenic | 50.0% | |
GCATCTGCTCTTTGTCCTTC+AGG | - | chr5.4:59342145-59342164 | None:intergenic | 50.0% | |
GGATGTCCAGAGACAGTGAC+AGG | + | chr5.4:59341394-59341413 | MS.gene26285:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 59341388 | 59342282 | 59341388 | ID=MS.gene26285 |
chr5.4 | mRNA | 59341388 | 59342282 | 59341388 | ID=MS.gene26285.t1;Parent=MS.gene26285 |
chr5.4 | exon | 59341388 | 59341415 | 59341388 | ID=MS.gene26285.t1.exon1;Parent=MS.gene26285.t1 |
chr5.4 | CDS | 59341388 | 59341415 | 59341388 | ID=cds.MS.gene26285.t1;Parent=MS.gene26285.t1 |
chr5.4 | exon | 59341618 | 59341868 | 59341618 | ID=MS.gene26285.t1.exon2;Parent=MS.gene26285.t1 |
chr5.4 | CDS | 59341618 | 59341868 | 59341618 | ID=cds.MS.gene26285.t1;Parent=MS.gene26285.t1 |
chr5.4 | exon | 59342136 | 59342282 | 59342136 | ID=MS.gene26285.t1.exon3;Parent=MS.gene26285.t1 |
chr5.4 | CDS | 59342136 | 59342282 | 59342136 | ID=cds.MS.gene26285.t1;Parent=MS.gene26285.t1 |
Gene Sequence |
Protein sequence |