Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26989.t1 | XP_013466134.1 | 96.4 | 331 | 12 | 0 | 1 | 331 | 1 | 331 | 1.90E-185 | 658.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26989.t1 | Q9XES5 | 73.6 | 326 | 86 | 0 | 1 | 326 | 1 | 326 | 1.2e-146 | 520.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26989.t1 | Q6TQT1 | 96.4 | 331 | 12 | 0 | 1 | 331 | 1 | 331 | 1.4e-185 | 658.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049907 | MS.gene26989 | 0.81527 | 1.01E-51 | -1.69E-46 |
| MS.gene050581 | MS.gene26989 | 0.808861 | 2.52E-50 | -1.69E-46 |
| MS.gene056902 | MS.gene26989 | 0.804484 | 2.11E-49 | -1.69E-46 |
| MS.gene056931 | MS.gene26989 | 0.819967 | 8.80E-53 | -1.69E-46 |
| MS.gene056933 | MS.gene26989 | 0.822807 | 1.94E-53 | -1.69E-46 |
| MS.gene056935 | MS.gene26989 | 0.809554 | 1.79E-50 | -1.69E-46 |
| MS.gene059529 | MS.gene26989 | 0.804273 | 2.34E-49 | -1.69E-46 |
| MS.gene059530 | MS.gene26989 | 0.851127 | 1.09E-60 | -1.69E-46 |
| MS.gene060356 | MS.gene26989 | 0.830956 | 2.19E-55 | -1.69E-46 |
| MS.gene060559 | MS.gene26989 | 0.809665 | 1.69E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26989 | MS.gene50853 | PPI |
| MS.gene26989 | MS.gene50830 | PPI |
| MS.gene50852 | MS.gene26989 | PPI |
| MS.gene26989 | MS.gene058751 | PPI |
| MS.gene26989 | MS.gene009245 | PPI |
| MS.gene058752 | MS.gene26989 | PPI |
| MS.gene50831 | MS.gene26989 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26989.t1 | MTR_1g022445 | 96.375 | 331 | 12 | 0 | 1 | 331 | 1 | 331 | 0.0 | 663 |
| MS.gene26989.t1 | MTR_1g022440 | 79.104 | 335 | 70 | 0 | 1 | 335 | 1 | 335 | 0.0 | 574 |
| MS.gene26989.t1 | MTR_7g074850 | 47.826 | 322 | 164 | 3 | 8 | 325 | 8 | 329 | 1.19e-102 | 305 |
| MS.gene26989.t1 | MTR_7g074820 | 47.516 | 322 | 165 | 3 | 8 | 325 | 8 | 329 | 2.01e-101 | 302 |
| MS.gene26989.t1 | MTR_7g074880 | 48.287 | 321 | 161 | 4 | 8 | 325 | 8 | 326 | 3.79e-101 | 301 |
| MS.gene26989.t1 | MTR_7g074730 | 45.794 | 321 | 171 | 3 | 8 | 325 | 8 | 328 | 8.56e-98 | 293 |
| MS.gene26989.t1 | MTR_4g092080 | 42.769 | 325 | 175 | 4 | 9 | 324 | 15 | 337 | 1.97e-94 | 284 |
| MS.gene26989.t1 | MTR_7g074710 | 44.548 | 321 | 173 | 4 | 8 | 325 | 8 | 326 | 3.17e-94 | 283 |
| MS.gene26989.t1 | MTR_4g023730 | 42.724 | 323 | 181 | 2 | 7 | 325 | 7 | 329 | 1.02e-91 | 277 |
| MS.gene26989.t1 | MTR_4g081440 | 41.935 | 341 | 164 | 8 | 9 | 326 | 21 | 350 | 2.78e-89 | 271 |
| MS.gene26989.t1 | MTR_4g081440 | 41.813 | 342 | 164 | 8 | 9 | 326 | 25 | 355 | 4.65e-89 | 271 |
| MS.gene26989.t1 | MTR_7g074870 | 45.614 | 285 | 151 | 3 | 43 | 325 | 6 | 288 | 6.00e-79 | 243 |
| MS.gene26989.t1 | MTR_3g005210 | 38.650 | 326 | 187 | 6 | 5 | 325 | 3 | 320 | 1.41e-77 | 241 |
| MS.gene26989.t1 | MTR_3g005170 | 38.037 | 326 | 189 | 6 | 2 | 322 | 4 | 321 | 2.42e-76 | 238 |
| MS.gene26989.t1 | MTR_8g062440 | 40.244 | 328 | 186 | 6 | 1 | 325 | 1 | 321 | 5.49e-75 | 234 |
| MS.gene26989.t1 | MTR_5g056600 | 39.688 | 320 | 185 | 6 | 9 | 325 | 5 | 319 | 1.08e-74 | 233 |
| MS.gene26989.t1 | MTR_2g101330 | 37.651 | 332 | 198 | 6 | 4 | 332 | 1 | 326 | 4.63e-74 | 232 |
| MS.gene26989.t1 | MTR_8g062440 | 40.122 | 329 | 186 | 7 | 1 | 325 | 1 | 322 | 3.95e-73 | 229 |
| MS.gene26989.t1 | MTR_8g062110 | 38.922 | 334 | 182 | 7 | 1 | 325 | 2 | 322 | 4.17e-73 | 229 |
| MS.gene26989.t1 | MTR_8g062110 | 38.922 | 334 | 182 | 7 | 1 | 325 | 11 | 331 | 6.27e-73 | 229 |
| MS.gene26989.t1 | MTR_3g005170 | 40.071 | 282 | 157 | 5 | 3 | 279 | 5 | 279 | 2.41e-72 | 226 |
| MS.gene26989.t1 | MTR_4g077130 | 37.963 | 324 | 192 | 5 | 2 | 322 | 3 | 320 | 8.42e-71 | 223 |
| MS.gene26989.t1 | MTR_8g062440 | 42.553 | 282 | 153 | 5 | 1 | 279 | 1 | 276 | 3.89e-70 | 222 |
| MS.gene26989.t1 | MTR_4g077100 | 38.941 | 321 | 187 | 6 | 5 | 322 | 8 | 322 | 1.10e-69 | 221 |
| MS.gene26989.t1 | MTR_4g006940 | 39.571 | 326 | 179 | 10 | 6 | 326 | 15 | 327 | 2.19e-67 | 215 |
| MS.gene26989.t1 | MTR_8g062110 | 40.278 | 288 | 151 | 6 | 1 | 279 | 2 | 277 | 2.88e-67 | 213 |
| MS.gene26989.t1 | MTR_8g062110 | 40.278 | 288 | 151 | 6 | 1 | 279 | 2 | 277 | 3.68e-67 | 213 |
| MS.gene26989.t1 | MTR_2g104960 | 40.123 | 324 | 180 | 10 | 5 | 325 | 17 | 329 | 8.22e-67 | 214 |
| MS.gene26989.t1 | MTR_4g077100 | 41.007 | 278 | 156 | 5 | 5 | 279 | 8 | 280 | 2.30e-66 | 211 |
| MS.gene26989.t1 | MTR_5g072620 | 35.866 | 329 | 194 | 8 | 4 | 325 | 1 | 319 | 1.39e-64 | 207 |
| MS.gene26989.t1 | MTR_3g031650 | 35.562 | 329 | 195 | 7 | 4 | 325 | 1 | 319 | 1.35e-63 | 204 |
| MS.gene26989.t1 | MTR_4g009040 | 36.335 | 322 | 190 | 10 | 8 | 325 | 13 | 323 | 2.97e-63 | 204 |
| MS.gene26989.t1 | MTR_4g009040 | 35.890 | 326 | 190 | 11 | 8 | 325 | 13 | 327 | 5.45e-61 | 198 |
| MS.gene26989.t1 | MTR_4g006940 | 41.007 | 278 | 148 | 8 | 6 | 279 | 15 | 280 | 3.11e-60 | 195 |
| MS.gene26989.t1 | MTR_4g006940 | 41.007 | 278 | 148 | 8 | 6 | 279 | 15 | 280 | 3.11e-60 | 195 |
| MS.gene26989.t1 | MTR_3g031650 | 37.500 | 280 | 159 | 6 | 4 | 276 | 1 | 271 | 1.72e-58 | 190 |
| MS.gene26989.t1 | MTR_4g009690 | 35.312 | 320 | 195 | 8 | 8 | 325 | 13 | 322 | 1.67e-57 | 189 |
| MS.gene26989.t1 | MTR_3g005170 | 33.129 | 326 | 174 | 7 | 2 | 322 | 4 | 290 | 1.89e-56 | 186 |
| MS.gene26989.t1 | MTR_4g009690 | 35.514 | 321 | 194 | 9 | 8 | 325 | 13 | 323 | 4.69e-56 | 185 |
| MS.gene26989.t1 | MTR_2g013230 | 34.524 | 336 | 199 | 7 | 8 | 325 | 8 | 340 | 5.47e-56 | 186 |
| MS.gene26989.t1 | MTR_2g013250 | 33.832 | 334 | 200 | 7 | 8 | 323 | 7 | 337 | 3.71e-54 | 181 |
| MS.gene26989.t1 | MTR_2g028620 | 33.030 | 330 | 200 | 10 | 6 | 325 | 8 | 326 | 1.73e-49 | 169 |
| MS.gene26989.t1 | MTR_2g013260 | 33.234 | 334 | 202 | 7 | 8 | 323 | 8 | 338 | 3.64e-49 | 168 |
| MS.gene26989.t1 | MTR_7g117190 | 31.250 | 336 | 211 | 7 | 8 | 325 | 7 | 340 | 1.93e-46 | 160 |
| MS.gene26989.t1 | MTR_2g028620 | 34.520 | 281 | 164 | 9 | 6 | 276 | 8 | 278 | 8.64e-45 | 156 |
| MS.gene26989.t1 | MTR_2g013260 | 34.138 | 290 | 172 | 6 | 8 | 279 | 8 | 296 | 4.03e-44 | 153 |
| MS.gene26989.t1 | MTR_7g117190 | 32.753 | 287 | 175 | 6 | 8 | 276 | 7 | 293 | 1.22e-41 | 147 |
| MS.gene26989.t1 | MTR_5g029990 | 29.712 | 313 | 184 | 11 | 5 | 305 | 9 | 297 | 7.66e-32 | 121 |
| MS.gene26989.t1 | MTR_8g062110 | 32.218 | 239 | 140 | 7 | 96 | 325 | 11 | 236 | 1.26e-31 | 119 |
| MS.gene26989.t1 | MTR_2g013230 | 31.276 | 243 | 146 | 7 | 101 | 325 | 11 | 250 | 9.56e-29 | 112 |
| MS.gene26989.t1 | MTR_0164s0070 | 40.000 | 130 | 77 | 1 | 4 | 132 | 1 | 130 | 1.40e-28 | 110 |
| MS.gene26989.t1 | MTR_8g062110 | 32.642 | 193 | 109 | 6 | 96 | 279 | 11 | 191 | 7.52e-26 | 102 |
| MS.gene26989.t1 | MTR_6g406250 | 29.297 | 256 | 161 | 10 | 8 | 253 | 55 | 300 | 1.12e-23 | 100 |
| MS.gene26989.t1 | MTR_2g013260 | 29.461 | 241 | 149 | 7 | 101 | 323 | 30 | 267 | 1.95e-21 | 92.8 |
| MS.gene26989.t1 | MTR_6g406250 | 29.245 | 212 | 140 | 6 | 8 | 213 | 55 | 262 | 1.08e-20 | 90.5 |
| MS.gene26989.t1 | MTR_3g101500 | 28.315 | 279 | 169 | 10 | 8 | 277 | 4 | 260 | 2.03e-18 | 84.7 |
| MS.gene26989.t1 | MTR_3g101500 | 28.315 | 279 | 169 | 10 | 8 | 277 | 4 | 260 | 3.04e-18 | 84.7 |
| MS.gene26989.t1 | MTR_7g117190 | 26.957 | 230 | 148 | 7 | 114 | 325 | 3 | 230 | 6.31e-18 | 82.0 |
| MS.gene26989.t1 | MTR_0685s0030 | 27.778 | 162 | 113 | 3 | 161 | 322 | 2 | 159 | 8.36e-14 | 68.9 |
| MS.gene26989.t1 | MTR_3g011130 | 34.711 | 121 | 68 | 5 | 99 | 213 | 30 | 145 | 1.61e-13 | 67.4 |
| MS.gene26989.t1 | MTR_3g101500 | 29.474 | 190 | 113 | 6 | 8 | 196 | 4 | 173 | 1.10e-12 | 67.0 |
| MS.gene26989.t1 | MTR_0685s0030 | 28.205 | 117 | 82 | 1 | 163 | 279 | 3 | 117 | 8.92e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26989.t1 | AT5G42800 | 69.325 | 326 | 100 | 0 | 1 | 326 | 1 | 326 | 2.72e-176 | 494 |
| MS.gene26989.t1 | AT4G35420 | 42.500 | 320 | 176 | 6 | 8 | 325 | 8 | 321 | 9.62e-89 | 270 |
| MS.gene26989.t1 | AT2G45400 | 43.077 | 325 | 178 | 3 | 8 | 325 | 40 | 364 | 2.18e-87 | 267 |
| MS.gene26989.t1 | AT1G61720 | 42.342 | 333 | 175 | 5 | 5 | 325 | 10 | 337 | 1.06e-86 | 265 |
| MS.gene26989.t1 | AT4G27250 | 38.393 | 336 | 181 | 9 | 3 | 317 | 8 | 338 | 5.57e-79 | 245 |
| MS.gene26989.t1 | AT1G09510 | 42.073 | 328 | 181 | 5 | 1 | 325 | 1 | 322 | 2.72e-78 | 243 |
| MS.gene26989.t1 | AT4G27250 | 38.602 | 329 | 180 | 8 | 3 | 317 | 8 | 328 | 1.68e-77 | 241 |
| MS.gene26989.t1 | AT1G51410 | 38.700 | 323 | 189 | 5 | 6 | 325 | 7 | 323 | 3.67e-77 | 240 |
| MS.gene26989.t1 | AT2G45400 | 43.885 | 278 | 149 | 3 | 8 | 278 | 40 | 317 | 5.86e-76 | 236 |
| MS.gene26989.t1 | AT5G19440 | 39.692 | 325 | 183 | 6 | 5 | 324 | 7 | 323 | 1.38e-72 | 228 |
| MS.gene26989.t1 | AT1G66800 | 39.198 | 324 | 184 | 8 | 1 | 319 | 1 | 316 | 4.02e-70 | 221 |
| MS.gene26989.t1 | AT2G45400 | 40.345 | 290 | 168 | 2 | 41 | 325 | 18 | 307 | 2.52e-69 | 219 |
| MS.gene26989.t1 | AT1G68540 | 38.629 | 321 | 187 | 7 | 10 | 325 | 6 | 321 | 7.27e-69 | 218 |
| MS.gene26989.t1 | AT1G09490 | 38.279 | 337 | 181 | 8 | 1 | 325 | 1 | 322 | 6.33e-68 | 216 |
| MS.gene26989.t1 | AT1G09480 | 38.253 | 332 | 188 | 8 | 1 | 325 | 1 | 322 | 1.46e-65 | 210 |
| MS.gene26989.t1 | AT1G15950 | 38.889 | 324 | 184 | 10 | 5 | 325 | 10 | 322 | 1.73e-65 | 210 |
| MS.gene26989.t1 | AT1G15950 | 38.889 | 324 | 184 | 10 | 5 | 325 | 10 | 322 | 1.73e-65 | 210 |
| MS.gene26989.t1 | AT2G33590 | 36.449 | 321 | 192 | 8 | 8 | 325 | 9 | 320 | 4.07e-65 | 209 |
| MS.gene26989.t1 | AT1G09480 | 38.253 | 332 | 188 | 8 | 1 | 325 | 48 | 369 | 4.24e-65 | 210 |
| MS.gene26989.t1 | AT1G25460 | 37.879 | 330 | 186 | 9 | 4 | 325 | 1 | 319 | 1.43e-64 | 207 |
| MS.gene26989.t1 | AT1G15950 | 39.228 | 311 | 176 | 9 | 5 | 312 | 10 | 310 | 9.94e-64 | 206 |
| MS.gene26989.t1 | AT2G02400 | 36.556 | 331 | 183 | 11 | 6 | 325 | 4 | 318 | 1.15e-63 | 205 |
| MS.gene26989.t1 | AT1G80820 | 38.820 | 322 | 183 | 10 | 8 | 326 | 8 | 318 | 2.18e-63 | 204 |
| MS.gene26989.t1 | AT5G58490 | 35.168 | 327 | 195 | 7 | 6 | 325 | 7 | 323 | 4.92e-63 | 203 |
| MS.gene26989.t1 | AT1G09500 | 36.418 | 335 | 193 | 8 | 1 | 325 | 1 | 325 | 7.62e-63 | 203 |
| MS.gene26989.t1 | AT1G09500 | 38.328 | 287 | 160 | 6 | 1 | 279 | 1 | 278 | 1.57e-61 | 198 |
| MS.gene26989.t1 | AT2G33600 | 35.312 | 320 | 197 | 7 | 8 | 325 | 9 | 320 | 3.32e-59 | 193 |
| MS.gene26989.t1 | AT2G45400 | 46.759 | 216 | 108 | 3 | 8 | 216 | 40 | 255 | 1.27e-57 | 187 |
| MS.gene26989.t1 | AT1G15950 | 40.072 | 277 | 154 | 8 | 5 | 279 | 10 | 276 | 2.21e-57 | 187 |
| MS.gene26989.t1 | AT1G15950 | 39.643 | 280 | 157 | 8 | 5 | 282 | 10 | 279 | 2.30e-57 | 188 |
| MS.gene26989.t1 | AT1G15950 | 39.711 | 277 | 155 | 8 | 5 | 279 | 10 | 276 | 1.49e-56 | 185 |
| MS.gene26989.t1 | AT1G80820 | 39.416 | 274 | 154 | 8 | 8 | 279 | 8 | 271 | 1.16e-54 | 180 |
| MS.gene26989.t1 | AT1G76470 | 33.028 | 327 | 213 | 6 | 3 | 327 | 2 | 324 | 5.16e-54 | 180 |
| MS.gene26989.t1 | AT1G09490 | 35.570 | 298 | 165 | 8 | 40 | 325 | 9 | 291 | 3.23e-49 | 167 |
| MS.gene26989.t1 | AT1G09500 | 34.007 | 297 | 176 | 8 | 39 | 325 | 5 | 291 | 2.46e-45 | 156 |
| MS.gene26989.t1 | AT1G68540 | 35.616 | 219 | 132 | 6 | 111 | 325 | 1 | 214 | 2.64e-35 | 128 |
| MS.gene26989.t1 | AT1G15950 | 34.783 | 230 | 141 | 7 | 99 | 325 | 1 | 224 | 9.61e-35 | 127 |
| MS.gene26989.t1 | AT4G30470 | 28.223 | 287 | 172 | 12 | 9 | 282 | 11 | 276 | 1.43e-28 | 112 |
| MS.gene26989.t1 | AT2G23910 | 26.786 | 280 | 184 | 11 | 9 | 281 | 11 | 276 | 1.86e-27 | 109 |
| MS.gene26989.t1 | AT2G23910 | 26.978 | 278 | 182 | 11 | 9 | 279 | 11 | 274 | 2.81e-27 | 108 |
| MS.gene26989.t1 | AT2G23910 | 26.578 | 301 | 198 | 12 | 9 | 300 | 11 | 297 | 3.07e-27 | 109 |
| MS.gene26989.t1 | AT4G33360 | 28.623 | 276 | 172 | 8 | 8 | 277 | 15 | 271 | 4.54e-22 | 95.1 |
| MS.gene26989.t1 | AT5G14700 | 29.771 | 262 | 157 | 10 | 8 | 253 | 55 | 305 | 6.09e-22 | 95.5 |
| MS.gene26989.t1 | AT4G33360 | 28.623 | 276 | 172 | 8 | 8 | 277 | 3 | 259 | 6.95e-22 | 94.7 |
| MS.gene26989.t1 | AT4G33360 | 28.623 | 276 | 172 | 8 | 8 | 277 | 15 | 271 | 7.92e-22 | 95.1 |
| MS.gene26989.t1 | AT5G14700 | 31.000 | 200 | 122 | 6 | 8 | 196 | 55 | 249 | 7.32e-19 | 85.9 |
| MS.gene26989.t1 | AT2G23910 | 25.385 | 260 | 171 | 12 | 50 | 300 | 18 | 263 | 6.46e-18 | 82.8 |
Find 84 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGATCTTCAGTAACGTTT+AGG | 0.241553 | 1.3:-2515853 | None:intergenic |
| ATTGATACATGCAGAGAAAA+AGG | 0.247887 | 1.3:+2516834 | MS.gene26989:CDS |
| ATTGGTGCTTTAACAAATTC+AGG | 0.252064 | 1.3:-2516864 | None:intergenic |
| TTCAGTAACGTTTAGGGTTC+CGG | 0.269534 | 1.3:-2515846 | None:intergenic |
| ATGATCAAGCCTACCATAAA+AGG | 0.270848 | 1.3:+2515755 | MS.gene26989:CDS |
| CATATTCTTGTTTGAGCATA+TGG | 0.271150 | 1.3:+2516503 | MS.gene26989:CDS |
| TGTTTGCGTCACAGGGGCTT+CGG | 0.316160 | 1.3:+2513325 | MS.gene26989:CDS |
| GATCATCCAAGTGGACAAAT+TGG | 0.337508 | 1.3:-2516467 | None:intergenic |
| TTGATCTTCAGTAACGTTTA+GGG | 0.340589 | 1.3:-2515852 | None:intergenic |
| TTTGAGCATATGGAAGTAGA+AGG | 0.341082 | 1.3:+2516513 | MS.gene26989:CDS |
| GAAGTCCATCTTGTGCTCTT+TGG | 0.342018 | 1.3:-2516136 | None:intergenic |
| GCCGAAACTGTTTGCGTCAC+AGG | 0.351008 | 1.3:+2513317 | MS.gene26989:CDS |
| TGTGTGACACCATTACTTAT+TGG | 0.352169 | 1.3:-2516882 | None:intergenic |
| AATCAATCTACGGACAGTTT+TGG | 0.354166 | 1.3:-2515810 | None:intergenic |
| CAAGAATATTCCAGATCAAT+TGG | 0.355555 | 1.3:+2516728 | MS.gene26989:CDS |
| GTTTGCGTCACAGGGGCTTC+GGG | 0.370303 | 1.3:+2513326 | MS.gene26989:CDS |
| CCCTGTGACGCAAACAGTTT+CGG | 0.380229 | 1.3:-2513318 | None:intergenic |
| CTTCGGGTTTCATCGGGTCA+TGG | 0.381174 | 1.3:+2513342 | MS.gene26989:CDS |
| CTCACAAGCTCCAATTGATC+TGG | 0.389786 | 1.3:-2516738 | None:intergenic |
| ACAGGGGCTTCGGGTTTCAT+CGG | 0.391119 | 1.3:+2513335 | MS.gene26989:CDS |
| ATCATCCCACCTCTTGTTGT+TGG | 0.405200 | 1.3:+2516165 | MS.gene26989:CDS |
| TTTGTGGGGATATTGTACTC+TGG | 0.409401 | 1.3:-2516603 | None:intergenic |
| TTTATAAATGTACCAGTGAT+AGG | 0.410676 | 1.3:-2516237 | None:intergenic |
| CAAAGAGCAAACTGTCCATT+TGG | 0.411352 | 1.3:+2513655 | MS.gene26989:CDS |
| CAGGGGCTTCGGGTTTCATC+GGG | 0.419287 | 1.3:+2513336 | MS.gene26989:CDS |
| GCATTAAGTACTTACTTTGT+GGG | 0.426047 | 1.3:-2516618 | None:intergenic |
| TTGTGGGGATATTGTACTCT+GGG | 0.449070 | 1.3:-2516602 | None:intergenic |
| GAAGCAATTAAAGGGTGTAC+TGG | 0.456664 | 1.3:+2513711 | MS.gene26989:CDS |
| TATGGGTACCTCAGGGTCCT+TGG | 0.456797 | 1.3:-2513769 | None:intergenic |
| GACAGTTTGCTCTTTGCACC+TGG | 0.475948 | 1.3:-2513648 | None:intergenic |
| GCAAGGCCAATTTGTCCACT+TGG | 0.475951 | 1.3:+2516461 | MS.gene26989:CDS |
| TAGGAGAAAGGGCAGTGATT+AGG | 0.477149 | 1.3:-2516218 | None:intergenic |
| ATCAAAGAAGATCAAAGACT+TGG | 0.477770 | 1.3:+2516767 | MS.gene26989:CDS |
| GGCATAGTTGGAATAAGAAA+AGG | 0.483517 | 1.3:-2516189 | None:intergenic |
| GCACAAATTTGCAGGAAATG+AGG | 0.483996 | 1.3:+2516419 | MS.gene26989:intron |
| ATTAGGCTAGGTGGCATAGT+TGG | 0.487275 | 1.3:-2516201 | None:intergenic |
| TTGAGCATATGGAAGTAGAA+GGG | 0.498318 | 1.3:+2516514 | MS.gene26989:CDS |
| CCGAAACTGTTTGCGTCACA+GGG | 0.498950 | 1.3:+2513318 | MS.gene26989:CDS |
| AGTCCTTTGTTAGAACTGCC+AGG | 0.502761 | 1.3:+2513630 | MS.gene26989:CDS |
| AAAATAAAATATGGGTTCCA+TGG | 0.504913 | 1.3:+2513295 | None:intergenic |
| ACTCATGGAGCGCGGTTACA+TGG | 0.507446 | 1.3:+2513376 | MS.gene26989:CDS |
| ATTTGAATTCAAATACAGCT+TGG | 0.508167 | 1.3:+2516791 | MS.gene26989:CDS |
| ATGTACCAGTGATAGGAGAA+AGG | 0.508607 | 1.3:-2516230 | None:intergenic |
| GAATGCAGAAAACTTGAAGA+AGG | 0.510219 | 1.3:+2513605 | MS.gene26989:intron |
| TGTACCAGTGATAGGAGAAA+GGG | 0.510873 | 1.3:-2516229 | None:intergenic |
| TTGATTTACACATCGTCCGC+CGG | 0.512560 | 1.3:+2515827 | MS.gene26989:CDS |
| GTTAAAGCACCAATAAGTAA+TGG | 0.513064 | 1.3:+2516873 | MS.gene26989:CDS |
| ACCAAGGTCAGCCTTCCAAA+TGG | 0.516767 | 1.3:-2513670 | None:intergenic |
| TGAAGATCAAAAGCCCTTGT+GGG | 0.521869 | 1.3:+2515865 | MS.gene26989:CDS |
| TCCATTTGGAAGGCTGACCT+TGG | 0.530988 | 1.3:+2513669 | MS.gene26989:CDS |
| AAGGCTGACCTTGGTGAAGA+AGG | 0.534105 | 1.3:+2513678 | MS.gene26989:CDS |
| TGAATTCAAATACAGCTTGG+AGG | 0.534333 | 1.3:+2516794 | MS.gene26989:CDS |
| CTGAAGATCAAAAGCCCTTG+TGG | 0.543581 | 1.3:+2515864 | MS.gene26989:CDS |
| ATGGCTTGTCATGAGACTCA+TGG | 0.550625 | 1.3:+2513361 | MS.gene26989:CDS |
| GACGCAAACAGTTTCGGCCA+TGG | 0.555179 | 1.3:-2513312 | None:intergenic |
| GGAGAGTGAAGATGACTGGC+TGG | 0.556468 | 1.3:+2515921 | MS.gene26989:CDS |
| CATTAAGTACTTACTTTGTG+GGG | 0.557405 | 1.3:-2516617 | None:intergenic |
| CGAGCAACAGTCCGCGACCC+AGG | 0.559232 | 1.3:+2513401 | MS.gene26989:CDS |
| CACTTGCGGAGCAAGAAGCA+TGG | 0.562977 | 1.3:+2516106 | MS.gene26989:CDS |
| TGCAGGAGAGTGAAGATGAC+TGG | 0.565963 | 1.3:+2515917 | MS.gene26989:CDS |
| TCAAAGAAGATCAAAGACTT+GGG | 0.567744 | 1.3:+2516768 | MS.gene26989:CDS |
| GAAAGGGCAGTGATTAGGCT+AGG | 0.570840 | 1.3:-2516213 | None:intergenic |
| AAAGGACCAACAACAAGAGG+TGG | 0.582880 | 1.3:-2516171 | None:intergenic |
| ACTGCCCTTTCTCCTATCAC+TGG | 0.583168 | 1.3:+2516225 | MS.gene26989:CDS |
| GAGCAAACTGTCCATTTGGA+AGG | 0.583763 | 1.3:+2513659 | MS.gene26989:CDS |
| ATTTGCCAAAGAGCACAAGA+TGG | 0.605063 | 1.3:+2516131 | MS.gene26989:CDS |
| AGAAAAGGACCAACAACAAG+AGG | 0.606682 | 1.3:-2516174 | None:intergenic |
| ACGATGTGTAAATCAATCTA+CGG | 0.609135 | 1.3:-2515820 | None:intergenic |
| CATTATTCGATTATAAAGCA+AGG | 0.613434 | 1.3:+2516444 | MS.gene26989:CDS |
| GAGAGTGAAGATGACTGGCT+GGG | 0.614181 | 1.3:+2515922 | MS.gene26989:CDS |
| AGCATATGGAAGTAGAAGGG+AGG | 0.617663 | 1.3:+2516517 | MS.gene26989:CDS |
| CCAACAGCTCTCATCCCACA+AGG | 0.627961 | 1.3:-2515879 | None:intergenic |
| CATCATGAAAGCATGCCTCA+AGG | 0.630278 | 1.3:+2515787 | MS.gene26989:CDS |
| TCCTTGGACTCAAAATCCAT+AGG | 0.646498 | 1.3:-2513753 | None:intergenic |
| CCTTGTGGGATGAGAGCTGT+TGG | 0.652347 | 1.3:+2515879 | MS.gene26989:CDS |
| AAGGACCAACAACAAGAGGT+GGG | 0.653580 | 1.3:-2516170 | None:intergenic |
| GCACCTGGCAGTTCTAACAA+AGG | 0.664303 | 1.3:-2513633 | None:intergenic |
| AGGGCAGTGATTAGGCTAGG+TGG | 0.683144 | 1.3:-2516210 | None:intergenic |
| CTTCACAAAGATCATCCAAG+TGG | 0.692415 | 1.3:-2516476 | None:intergenic |
| CAACAGCTCTCATCCCACAA+GGG | 0.696587 | 1.3:-2515878 | None:intergenic |
| CGAAACTGTTTGCGTCACAG+GGG | 0.700520 | 1.3:+2513319 | MS.gene26989:CDS |
| GTCATGAGACTCATGGAGCG+CGG | 0.701087 | 1.3:+2513368 | MS.gene26989:CDS |
| CAAAACTACCTTCTTCACCA+AGG | 0.706268 | 1.3:-2513686 | None:intergenic |
| AGTAACGTTTAGGGTTCCGG+CGG | 0.708151 | 1.3:-2515843 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACATATAAAATTAAAGTA+TGG | - | chr1.3:2513790-2513809 | None:intergenic | 10.0% |
| !! | TACATATAAAATTAAAGTAT+GGG | - | chr1.3:2513789-2513808 | None:intergenic | 10.0% |
| !! | TATAATAAAAAATCAGTAAA+AGG | - | chr1.3:2515480-2515499 | None:intergenic | 10.0% |
| !! | TTAAATTATAAAACTCTTAT+AGG | - | chr1.3:2515998-2516017 | None:intergenic | 10.0% |
| !!! | AATCTAATCATTTTTTTTTT+TGG | + | chr1.3:2515380-2515399 | MS.gene26989:intron | 10.0% |
| !!! | ATAAAAGTGAATTAAAATTT+TGG | + | chr1.3:2514890-2514909 | MS.gene26989:intron | 10.0% |
| !!! | ATTTTGATTAAAAAAATTGT+TGG | - | chr1.3:2513487-2513506 | None:intergenic | 10.0% |
| !!! | TAATTTAATTTAAAGTGATT+AGG | - | chr1.3:2516027-2516046 | None:intergenic | 10.0% |
| !!! | TTTTAATACCATTATATATT+TGG | - | chr1.3:2514035-2514054 | None:intergenic | 10.0% |
| !!! | TTTTTATAAACTTTAGTATA+TGG | - | chr1.3:2515274-2515293 | None:intergenic | 10.0% |
| !! | AAAAAAATGATTAGATTGTT+AGG | - | chr1.3:2515377-2515396 | None:intergenic | 15.0% |
| !! | AAAACTATAACTGAAAATTA+TGG | - | chr1.3:2514822-2514841 | None:intergenic | 15.0% |
| !!! | AATTAAAATTTTGGTGATAA+TGG | + | chr1.3:2514899-2514918 | MS.gene26989:intron | 15.0% |
| !!! | AATTATATGCCAATTTTTTA+AGG | - | chr1.3:2516314-2516333 | None:intergenic | 15.0% |
| !!! | ATAGATATCTAAGTTTTTTT+TGG | + | chr1.3:2514572-2514591 | MS.gene26989:intron | 15.0% |
| !!! | ATTGTTTAAATTGGATTTTT+AGG | + | chr1.3:2516703-2516722 | MS.gene26989:intron | 15.0% |
| !!! | TAGATATCTAAGTTTTTTTT+GGG | + | chr1.3:2514573-2514592 | MS.gene26989:intron | 15.0% |
| !!! | TATAGTTTGATTTGTAATTT+TGG | - | chr1.3:2515313-2515332 | None:intergenic | 15.0% |
| !!! | TATGTTAAGGAATTTAAAAT+AGG | - | chr1.3:2514718-2514737 | None:intergenic | 15.0% |
| !! | AAATGTTGCAACATAAAAAA+AGG | - | chr1.3:2513429-2513448 | None:intergenic | 20.0% |
| !! | AATGTTGCAACATAAAAAAA+GGG | - | chr1.3:2513428-2513447 | None:intergenic | 20.0% |
| !! | AGCATAATGTAATTTATTAG+GGG | + | chr1.3:2514311-2514330 | MS.gene26989:intron | 20.0% |
| !! | ATCTCTTGTGAAAAATTTAT+TGG | + | chr1.3:2515435-2515454 | MS.gene26989:intron | 20.0% |
| !! | CCATTAATCCAAATATATAA+TGG | + | chr1.3:2514024-2514043 | MS.gene26989:intron | 20.0% |
| !! | CCATTATATATTTGGATTAA+TGG | - | chr1.3:2514027-2514046 | None:intergenic | 20.0% |
| !! | GAGCATAATGTAATTTATTA+GGG | + | chr1.3:2514310-2514329 | MS.gene26989:intron | 20.0% |
| !! | GCTTAAATTCCTTAAAAAAT+TGG | + | chr1.3:2516302-2516321 | MS.gene26989:intron | 20.0% |
| !! | GTTATTATCAATGTAGTAAT+GGG | - | chr1.3:2513964-2513983 | None:intergenic | 20.0% |
| !! | TGAGCATAATGTAATTTATT+AGG | + | chr1.3:2514309-2514328 | MS.gene26989:intron | 20.0% |
| !! | TTATAAACTTTAGTATATGG+CGG | - | chr1.3:2515271-2515290 | None:intergenic | 20.0% |
| !!! | CCAAAACTAGAAATTTTTTA+TGG | + | chr1.3:2514635-2514654 | MS.gene26989:intron | 20.0% |
| !!! | CCATAAAAAATTTCTAGTTT+TGG | - | chr1.3:2514638-2514657 | None:intergenic | 20.0% |
| !!! | GTCACAACTATTTTTTTAAA+GGG | + | chr1.3:2514525-2514544 | MS.gene26989:intron | 20.0% |
| !!! | GTTTATATATACACACATTT+TGG | + | chr1.3:2513583-2513602 | MS.gene26989:intron | 20.0% |
| !!! | TAAGGAATTTAAAATAGGAA+TGG | - | chr1.3:2514713-2514732 | None:intergenic | 20.0% |
| !!! | TGTCACAACTATTTTTTTAA+AGG | + | chr1.3:2514524-2514543 | MS.gene26989:intron | 20.0% |
| !!! | TTACGTAGATATTTAAAACT+TGG | - | chr1.3:2514768-2514787 | None:intergenic | 20.0% |
| !!! | TTTGGAAATTCAATATTTTG+CGG | - | chr1.3:2513855-2513874 | None:intergenic | 20.0% |
| ! | AAGTAAAACAAATGGTTGAT+TGG | + | chr1.3:2515047-2515066 | MS.gene26989:intron | 25.0% |
| ! | AATACATTCAGTAGAAATCA+AGG | + | chr1.3:2514237-2514256 | MS.gene26989:intron | 25.0% |
| ! | AATTCCTTAACATATGTCTT+TGG | + | chr1.3:2514724-2514743 | MS.gene26989:intron | 25.0% |
| ! | ACTTCAAATGTTTAATTGAG+AGG | + | chr1.3:2514399-2514418 | MS.gene26989:intron | 25.0% |
| ! | AGTAACTACTAAAATGGAAA+CGG | - | chr1.3:2514002-2514021 | None:intergenic | 25.0% |
| ! | ATACATTCAGTAGAAATCAA+GGG | + | chr1.3:2514238-2514257 | MS.gene26989:intron | 25.0% |
| ! | ATTCCTTAACATATGTCTTT+GGG | + | chr1.3:2514725-2514744 | MS.gene26989:intron | 25.0% |
| ! | ATTTGAATTCAAATACAGCT+TGG | + | chr1.3:2516791-2516810 | MS.gene26989:CDS | 25.0% |
| ! | CAAAACTCAAGAAAATTGAT+GGG | + | chr1.3:2513561-2513580 | MS.gene26989:intron | 25.0% |
| ! | CATTATTCGATTATAAAGCA+AGG | + | chr1.3:2516444-2516463 | MS.gene26989:CDS | 25.0% |
| ! | GCTTGTCTAATTGTTTAAAT+TGG | + | chr1.3:2516694-2516713 | MS.gene26989:intron | 25.0% |
| ! | GGTTATTATCAATGTAGTAA+TGG | - | chr1.3:2513965-2513984 | None:intergenic | 25.0% |
| ! | TAGTTGAGAAGTAAAACAAA+TGG | + | chr1.3:2515157-2515176 | MS.gene26989:intron | 25.0% |
| ! | TCAAAACTCAAGAAAATTGA+TGG | + | chr1.3:2513560-2513579 | MS.gene26989:intron | 25.0% |
| ! | TCTATCATCTCATATATGAA+TGG | + | chr1.3:2513809-2513828 | MS.gene26989:intron | 25.0% |
| ! | TTTATAAATGTACCAGTGAT+AGG | - | chr1.3:2516240-2516259 | None:intergenic | 25.0% |
| !! | AATTGTTACTTAGTAGTAGA+CGG | - | chr1.3:2516378-2516397 | None:intergenic | 25.0% |
| !! | TTGGAAATTCAATATTTTGC+GGG | - | chr1.3:2513854-2513873 | None:intergenic | 25.0% |
| !!! | AGTTTTGATGAAGCAATTAA+AGG | + | chr1.3:2513702-2513721 | MS.gene26989:CDS | 25.0% |
| !!! | GTTTTGATGAAGCAATTAAA+GGG | + | chr1.3:2513703-2513722 | MS.gene26989:CDS | 25.0% |
| !!! | TAAAATTTTGGTGATAATGG+TGG | + | chr1.3:2514902-2514921 | MS.gene26989:intron | 25.0% |
| AACCTAGTATAACATCCTTT+GGG | + | chr1.3:2513908-2513927 | MS.gene26989:intron | 30.0% | |
| AAGGGTTAATGACAATGATT+TGG | + | chr1.3:2514543-2514562 | MS.gene26989:intron | 30.0% | |
| AATAATGCTAGTTATCCTGA+TGG | - | chr1.3:2514287-2514306 | None:intergenic | 30.0% | |
| AATAGCCTCTTCATTATTCA+AGG | + | chr1.3:2514979-2514998 | MS.gene26989:intron | 30.0% | |
| ACAATTGATCGAAGATAACA+TGG | + | chr1.3:2516392-2516411 | MS.gene26989:intron | 30.0% | |
| ACGATGTGTAAATCAATCTA+CGG | - | chr1.3:2515823-2515842 | None:intergenic | 30.0% | |
| AGCATTAAGTACTTACTTTG+TGG | - | chr1.3:2516622-2516641 | None:intergenic | 30.0% | |
| AGGGTTAATGACAATGATTT+GGG | + | chr1.3:2514544-2514563 | MS.gene26989:intron | 30.0% | |
| AGGTGTATAACAATATGGTT+GGG | + | chr1.3:2515684-2515703 | MS.gene26989:intron | 30.0% | |
| AGTACAGGTGTATAACAATA+TGG | + | chr1.3:2515679-2515698 | MS.gene26989:intron | 30.0% | |
| AGTAGTGGTGTAAAACAATA+TGG | + | chr1.3:2515621-2515640 | MS.gene26989:intron | 30.0% | |
| ATAGCCTCTTCATTATTCAA+GGG | + | chr1.3:2514980-2514999 | MS.gene26989:intron | 30.0% | |
| ATATATTTATAGCTACCCAG+TGG | - | chr1.3:2515577-2515596 | None:intergenic | 30.0% | |
| ATCAAAGAAGATCAAAGACT+TGG | + | chr1.3:2516767-2516786 | MS.gene26989:CDS | 30.0% | |
| ATGGTGAGTAACTACTAAAA+TGG | - | chr1.3:2514008-2514027 | None:intergenic | 30.0% | |
| ATGTAATTTATTAGGGGTGA+TGG | + | chr1.3:2514317-2514336 | MS.gene26989:intron | 30.0% | |
| ATTGATACATGCAGAGAAAA+AGG | + | chr1.3:2516834-2516853 | MS.gene26989:CDS | 30.0% | |
| CAAGAATATTCCAGATCAAT+TGG | + | chr1.3:2516728-2516747 | MS.gene26989:CDS | 30.0% | |
| CATTAAGTACTTACTTTGTG+GGG | - | chr1.3:2516620-2516639 | None:intergenic | 30.0% | |
| GAAAATGATAAACATCCCAA+AGG | - | chr1.3:2513926-2513945 | None:intergenic | 30.0% | |
| GAAACGGTTCATACATTTAA+TGG | - | chr1.3:2513986-2514005 | None:intergenic | 30.0% | |
| GAACACAAATAGAACAAAGT+TGG | - | chr1.3:2514440-2514459 | None:intergenic | 30.0% | |
| GAAGTAACAAATGGTTTGAT+TGG | + | chr1.3:2514929-2514948 | MS.gene26989:intron | 30.0% | |
| GCATTAAGTACTTACTTTGT+GGG | - | chr1.3:2516621-2516640 | None:intergenic | 30.0% | |
| TAAAACAAATGGTTGATTGG+TGG | + | chr1.3:2515050-2515069 | MS.gene26989:intron | 30.0% | |
| TAATGGGATGGTTACAAAAA+AGG | - | chr1.3:2513948-2513967 | None:intergenic | 30.0% | |
| TATATTTATAGCTACCCAGT+GGG | - | chr1.3:2515576-2515595 | None:intergenic | 30.0% | |
| TCAAAGAAGATCAAAGACTT+GGG | + | chr1.3:2516768-2516787 | MS.gene26989:CDS | 30.0% | |
| TGGTTGAGAAGTAAAACAAA+TGG | + | chr1.3:2515039-2515058 | MS.gene26989:intron | 30.0% | |
| TTCAACATCATCTAGTGATA+AGG | + | chr1.3:2514457-2514476 | MS.gene26989:intron | 30.0% | |
| TTGATACATGCAGAGAAAAA+GGG | + | chr1.3:2516835-2516854 | MS.gene26989:CDS | 30.0% | |
| TTGATCTTCAGTAACGTTTA+GGG | - | chr1.3:2515855-2515874 | None:intergenic | 30.0% | |
| TTTGATCTTCAGTAACGTTT+AGG | - | chr1.3:2515856-2515875 | None:intergenic | 30.0% | |
| ! | ATTGGTGCTTTAACAAATTC+AGG | - | chr1.3:2516867-2516886 | None:intergenic | 30.0% |
| ! | CATATTCTTGTTTGAGCATA+TGG | + | chr1.3:2516503-2516522 | MS.gene26989:CDS | 30.0% |
| ! | GAAGTTTTACATAAACTGTG+TGG | - | chr1.3:2514384-2514403 | None:intergenic | 30.0% |
| ! | GTTAAAGCACCAATAAGTAA+TGG | + | chr1.3:2516873-2516892 | MS.gene26989:CDS | 30.0% |
| ! | TGGAAATTCAATATTTTGCG+GGG | - | chr1.3:2513853-2513872 | None:intergenic | 30.0% |
| ! | TTATCAATGTAGTAATGGGA+TGG | - | chr1.3:2513960-2513979 | None:intergenic | 30.0% |
| !! | ATGGTTTGTTAGATTCTCTA+TGG | + | chr1.3:2514336-2514355 | MS.gene26989:intron | 30.0% |
| !!! | TTTTGTTTCTAAGACACTTG+CGG | + | chr1.3:2516092-2516111 | MS.gene26989:CDS | 30.0% |
| AATCCCCTTGAATAATGAAG+AGG | - | chr1.3:2514987-2515006 | None:intergenic | 35.0% | |
| AATTAAAGTATGGGTACCTC+AGG | - | chr1.3:2513780-2513799 | None:intergenic | 35.0% | |
| ATCCCAAAGGATGTTATACT+AGG | - | chr1.3:2513913-2513932 | None:intergenic | 35.0% | |
| ATGATCAAGCCTACCATAAA+AGG | + | chr1.3:2515755-2515774 | MS.gene26989:CDS | 35.0% | |
| ATTAAAGTATGGGTACCTCA+GGG | - | chr1.3:2513779-2513798 | None:intergenic | 35.0% | |
| CAACATAAAAAAAGGGACCT+GGG | - | chr1.3:2513421-2513440 | None:intergenic | 35.0% | |
| CAACCTAGTATAACATCCTT+TGG | + | chr1.3:2513907-2513926 | MS.gene26989:intron | 35.0% | |
| CACTATGAAGCAATGTTCTT+TGG | - | chr1.3:2513873-2513892 | None:intergenic | 35.0% | |
| CAGGTGTATAACAATATGGT+TGG | + | chr1.3:2515683-2515702 | MS.gene26989:intron | 35.0% | |
| CTACGTAAATGAGATTGAGA+TGG | + | chr1.3:2514780-2514799 | MS.gene26989:intron | 35.0% | |
| CTTCTGCAAAAAGAAATGTG+TGG | + | chr1.3:2515507-2515526 | MS.gene26989:intron | 35.0% | |
| GAATGCAGAAAACTTGAAGA+AGG | + | chr1.3:2513605-2513624 | MS.gene26989:intron | 35.0% | |
| GGCATAGTTGGAATAAGAAA+AGG | - | chr1.3:2516192-2516211 | None:intergenic | 35.0% | |
| GTAACAAATGGTTTGATTGG+TGG | + | chr1.3:2514932-2514951 | MS.gene26989:intron | 35.0% | |
| TAGCCTCTTCATTATTCAAG+GGG | + | chr1.3:2514981-2515000 | MS.gene26989:intron | 35.0% | |
| TAGTGATAAGGACAGTGAAT+AGG | + | chr1.3:2514469-2514488 | MS.gene26989:intron | 35.0% | |
| TGAATTCAAATACAGCTTGG+AGG | + | chr1.3:2516794-2516813 | MS.gene26989:CDS | 35.0% | |
| TGTCCCAAAGACATATGTTA+AGG | - | chr1.3:2514731-2514750 | None:intergenic | 35.0% | |
| TGTGTGACACCATTACTTAT+TGG | - | chr1.3:2516885-2516904 | None:intergenic | 35.0% | |
| TTGAGCATATGGAAGTAGAA+GGG | + | chr1.3:2516514-2516533 | MS.gene26989:CDS | 35.0% | |
| TTTGAGCATATGGAAGTAGA+AGG | + | chr1.3:2516513-2516532 | MS.gene26989:CDS | 35.0% | |
| ! | AATCAATCTACGGACAGTTT+TGG | - | chr1.3:2515813-2515832 | None:intergenic | 35.0% |
| ! | GGAAATTCAATATTTTGCGG+GGG | - | chr1.3:2513852-2513871 | None:intergenic | 35.0% |
| ! | GTTTGTTAGATTCTCTATGG+TGG | + | chr1.3:2514339-2514358 | MS.gene26989:intron | 35.0% |
| !! | ATGGTTTTGCACAAATTTGC+AGG | + | chr1.3:2516411-2516430 | MS.gene26989:intron | 35.0% |
| ACAAGAGATGATCAGTGTTC+AGG | - | chr1.3:2515424-2515443 | None:intergenic | 40.0% | |
| AGAAAAGGACCAACAACAAG+AGG | - | chr1.3:2516177-2516196 | None:intergenic | 40.0% | |
| ATGTACCAGTGATAGGAGAA+AGG | - | chr1.3:2516233-2516252 | None:intergenic | 40.0% | |
| CAAAACTACCTTCTTCACCA+AGG | - | chr1.3:2513689-2513708 | None:intergenic | 40.0% | |
| CAAAGAGCAAACTGTCCATT+TGG | + | chr1.3:2513655-2513674 | MS.gene26989:CDS | 40.0% | |
| CATCCCCTTGAATAATGAAG+AGG | - | chr1.3:2515105-2515124 | None:intergenic | 40.0% | |
| CTTCACAAAGATCATCCAAG+TGG | - | chr1.3:2516479-2516498 | None:intergenic | 40.0% | |
| GATCATCCAAGTGGACAAAT+TGG | - | chr1.3:2516470-2516489 | None:intergenic | 40.0% | |
| GCAACATAAAAAAAGGGACC+TGG | - | chr1.3:2513422-2513441 | None:intergenic | 40.0% | |
| GCACAAATTTGCAGGAAATG+AGG | + | chr1.3:2516419-2516438 | MS.gene26989:intron | 40.0% | |
| GGTGGTTGAGAAGTAACAAA+TGG | + | chr1.3:2514920-2514939 | MS.gene26989:intron | 40.0% | |
| TAAATTAGTCGTGATCCCGT+CGG | - | chr1.3:2514138-2514157 | None:intergenic | 40.0% | |
| TCCTTGGACTCAAAATCCAT+AGG | - | chr1.3:2513756-2513775 | None:intergenic | 40.0% | |
| TGAAGATCAAAAGCCCTTGT+GGG | + | chr1.3:2515865-2515884 | MS.gene26989:CDS | 40.0% | |
| TGTACCAGTGATAGGAGAAA+GGG | - | chr1.3:2516232-2516251 | None:intergenic | 40.0% | |
| TTGTGCACGATCTTAAGTAG+TGG | + | chr1.3:2515606-2515625 | MS.gene26989:intron | 40.0% | |
| TTGTGGGGATATTGTACTCT+GGG | - | chr1.3:2516605-2516624 | None:intergenic | 40.0% | |
| TTTGTGGGGATATTGTACTC+TGG | - | chr1.3:2516606-2516625 | None:intergenic | 40.0% | |
| ! | ATTTCGCTAGCTTATCCATC+AGG | + | chr1.3:2514269-2514288 | MS.gene26989:intron | 40.0% |
| ! | ATTTGCCAAAGAGCACAAGA+TGG | + | chr1.3:2516131-2516150 | MS.gene26989:CDS | 40.0% |
| ! | CTTGTTATCTTGTGCCCTTA+GGG | + | chr1.3:2514597-2514616 | MS.gene26989:intron | 40.0% |
| ! | GAAGCAATTAAAGGGTGTAC+TGG | + | chr1.3:2513711-2513730 | MS.gene26989:CDS | 40.0% |
| ! | GATGTCTAGCACTCCTTTTA+TGG | - | chr1.3:2515771-2515790 | None:intergenic | 40.0% |
| ! | GTGTACTGGAGTTTTTCATG+TGG | + | chr1.3:2513725-2513744 | MS.gene26989:CDS | 40.0% |
| ! | TCTAGCACTCCTTTTATGGT+AGG | - | chr1.3:2515767-2515786 | None:intergenic | 40.0% |
| ! | TCTTGTTATCTTGTGCCCTT+AGG | + | chr1.3:2514596-2514615 | MS.gene26989:intron | 40.0% |
| ! | TGTTACTTAGTAGTAGACGG+TGG | - | chr1.3:2516375-2516394 | None:intergenic | 40.0% |
| ! | TTCAGTAACGTTTAGGGTTC+CGG | - | chr1.3:2515849-2515868 | None:intergenic | 40.0% |
| ! | TTTTCATGTGGCTACACCTA+TGG | + | chr1.3:2513737-2513756 | MS.gene26989:CDS | 40.0% |
| !! | ACCTATGGATTTTGAGTCCA+AGG | + | chr1.3:2513752-2513771 | MS.gene26989:CDS | 40.0% |
| !! | ATTCCTTAACTTGTGCCCTA+AGG | - | chr1.3:2514615-2514634 | None:intergenic | 40.0% |
| !! | TTCCTTAACTTGTGCCCTAA+GGG | - | chr1.3:2514614-2514633 | None:intergenic | 40.0% |
| AAAGGACCAACAACAAGAGG+TGG | - | chr1.3:2516174-2516193 | None:intergenic | 45.0% | |
| AAATTAGTCGTGATCCCGTC+GGG | - | chr1.3:2514137-2514156 | None:intergenic | 45.0% | |
| AAGGACCAACAACAAGAGGT+GGG | - | chr1.3:2516173-2516192 | None:intergenic | 45.0% | |
| ACAGTGAATAGGTACCTAGG+TGG | + | chr1.3:2514480-2514499 | MS.gene26989:intron | 45.0% | |
| AGCATATGGAAGTAGAAGGG+AGG | + | chr1.3:2516517-2516536 | MS.gene26989:CDS | 45.0% | |
| AGGACAGTGAATAGGTACCT+AGG | + | chr1.3:2514477-2514496 | MS.gene26989:intron | 45.0% | |
| AGTCCTTTGTTAGAACTGCC+AGG | + | chr1.3:2513630-2513649 | MS.gene26989:CDS | 45.0% | |
| ATTAGGCTAGGTGGCATAGT+TGG | - | chr1.3:2516204-2516223 | None:intergenic | 45.0% | |
| CTCACAAGCTCCAATTGATC+TGG | - | chr1.3:2516741-2516760 | None:intergenic | 45.0% | |
| CTGAAGATCAAAAGCCCTTG+TGG | + | chr1.3:2515864-2515883 | MS.gene26989:CDS | 45.0% | |
| GAAGTCCATCTTGTGCTCTT+TGG | - | chr1.3:2516139-2516158 | None:intergenic | 45.0% | |
| GAGCAAACTGTCCATTTGGA+AGG | + | chr1.3:2513659-2513678 | MS.gene26989:CDS | 45.0% | |
| GTTGGGAATCGAGTCTGAAA+TGG | + | chr1.3:2515701-2515720 | MS.gene26989:intron | 45.0% | |
| TAGGAGAAAGGGCAGTGATT+AGG | - | chr1.3:2516221-2516240 | None:intergenic | 45.0% | |
| TCGTTCCTTCCACGATTCAA+GGG | + | chr1.3:2514171-2514190 | MS.gene26989:intron | 45.0% | |
| TTCGTTCCTTCCACGATTCA+AGG | + | chr1.3:2514170-2514189 | MS.gene26989:intron | 45.0% | |
| TTGATTTACACATCGTCCGC+CGG | + | chr1.3:2515827-2515846 | MS.gene26989:CDS | 45.0% | |
| TTGTGCACGATCTTGAGTAC+AGG | + | chr1.3:2515664-2515683 | MS.gene26989:intron | 45.0% | |
| ! | ATCATCCCACCTCTTGTTGT+TGG | + | chr1.3:2516165-2516184 | MS.gene26989:CDS | 45.0% |
| ! | ATGGCTTGTCATGAGACTCA+TGG | + | chr1.3:2513361-2513380 | MS.gene26989:CDS | 45.0% |
| ! | CATCATGAAAGCATGCCTCA+AGG | + | chr1.3:2515787-2515806 | MS.gene26989:CDS | 45.0% |
| ! | GGAGTGATGTTGAGTTTTGC+AGG | + | chr1.3:2515900-2515919 | MS.gene26989:CDS | 45.0% |
| ! | TGGCAAAGATGGTGATGACA+TGG | + | chr1.3:2514500-2514519 | MS.gene26989:intron | 45.0% |
| AAAAAAAGGGACCTGGGTCG+CGG | - | chr1.3:2513415-2513434 | None:intergenic | 50.0% | |
| AAGGCTGACCTTGGTGAAGA+AGG | + | chr1.3:2513678-2513697 | MS.gene26989:CDS | 50.0% | |
| ACCAAGGTCAGCCTTCCAAA+TGG | - | chr1.3:2513673-2513692 | None:intergenic | 50.0% | |
| ACTGCCCTTTCTCCTATCAC+TGG | + | chr1.3:2516225-2516244 | MS.gene26989:CDS | 50.0% | |
| AGGTACCTAGGTGGCAAAGA+TGG | + | chr1.3:2514489-2514508 | MS.gene26989:intron | 50.0% | |
| CAACAGCTCTCATCCCACAA+GGG | - | chr1.3:2515881-2515900 | None:intergenic | 50.0% | |
| CATCACCATCTTTGCCACCT+AGG | - | chr1.3:2514497-2514516 | None:intergenic | 50.0% | |
| CCCGAAGCAATTTATCCCGA+CGG | + | chr1.3:2514119-2514138 | MS.gene26989:intron | 50.0% | |
| CCCGTCGGGATAAATTGCTT+CGG | - | chr1.3:2514123-2514142 | None:intergenic | 50.0% | |
| CCCTGTGACGCAAACAGTTT+CGG | - | chr1.3:2513321-2513340 | None:intergenic | 50.0% | |
| CCGAAACTGTTTGCGTCACA+GGG | + | chr1.3:2513318-2513337 | MS.gene26989:CDS | 50.0% | |
| CCGAAGCAATTTATCCCGAC+GGG | + | chr1.3:2514120-2514139 | MS.gene26989:intron | 50.0% | |
| CCGTCGGGATAAATTGCTTC+GGG | - | chr1.3:2514122-2514141 | None:intergenic | 50.0% | |
| CGAAACTGTTTGCGTCACAG+GGG | + | chr1.3:2513319-2513338 | MS.gene26989:CDS | 50.0% | |
| GAAAGGGCAGTGATTAGGCT+AGG | - | chr1.3:2516216-2516235 | None:intergenic | 50.0% | |
| GCAAGGCCAATTTGTCCACT+TGG | + | chr1.3:2516461-2516480 | MS.gene26989:CDS | 50.0% | |
| TCCATTTGGAAGGCTGACCT+TGG | + | chr1.3:2513669-2513688 | MS.gene26989:CDS | 50.0% | |
| TGCAGGAGAGTGAAGATGAC+TGG | + | chr1.3:2515917-2515936 | MS.gene26989:CDS | 50.0% | |
| TGCCCTTAGGGCACAAGTTA+AGG | + | chr1.3:2514609-2514628 | MS.gene26989:intron | 50.0% | |
| TTCCTTCCACGATTCAAGGG+AGG | + | chr1.3:2514174-2514193 | MS.gene26989:intron | 50.0% | |
| ! | AGAGAGGATTTGCTCCCACT+GGG | + | chr1.3:2515559-2515578 | MS.gene26989:intron | 50.0% |
| ! | AGGTGCCACAATACAAGGGA+GGG | + | chr1.3:2514194-2514213 | MS.gene26989:intron | 50.0% |
| ! | AGTAACGTTTAGGGTTCCGG+CGG | - | chr1.3:2515846-2515865 | None:intergenic | 50.0% |
| ! | GACAGTTTGCTCTTTGCACC+TGG | - | chr1.3:2513651-2513670 | None:intergenic | 50.0% |
| ! | GAGAGTGAAGATGACTGGCT+GGG | + | chr1.3:2515922-2515941 | MS.gene26989:CDS | 50.0% |
| ! | GCACCTGGCAGTTCTAACAA+AGG | - | chr1.3:2513636-2513655 | None:intergenic | 50.0% |
| !! | AAGGGAGGTGCCACAATACA+AGG | + | chr1.3:2514189-2514208 | MS.gene26989:intron | 50.0% |
| !! | AGGGAGGTGCCACAATACAA+GGG | + | chr1.3:2514190-2514209 | MS.gene26989:intron | 50.0% |
| !! | TTTTGAGTCCAAGGACCCTG+AGG | + | chr1.3:2513761-2513780 | MS.gene26989:CDS | 50.0% |
| !!! | TACGGACAGTTTTGGCCTTG+AGG | - | chr1.3:2515805-2515824 | None:intergenic | 50.0% |
| ACTCATGGAGCGCGGTTACA+TGG | + | chr1.3:2513376-2513395 | MS.gene26989:CDS | 55.0% | |
| AGGGCAGTGATTAGGCTAGG+TGG | - | chr1.3:2516213-2516232 | None:intergenic | 55.0% | |
| CACCTCCCTTGAATCGTGGA+AGG | - | chr1.3:2514179-2514198 | None:intergenic | 55.0% | |
| CACTTGCGGAGCAAGAAGCA+TGG | + | chr1.3:2516106-2516125 | MS.gene26989:CDS | 55.0% | |
| CCAACAGCTCTCATCCCACA+AGG | - | chr1.3:2515882-2515901 | None:intergenic | 55.0% | |
| CCTTGTGGGATGAGAGCTGT+TGG | + | chr1.3:2515879-2515898 | MS.gene26989:CDS | 55.0% | |
| GACGCAAACAGTTTCGGCCA+TGG | - | chr1.3:2513315-2513334 | None:intergenic | 55.0% | |
| GCAAACACTCTCCACGAGAG+AGG | + | chr1.3:2515543-2515562 | MS.gene26989:intron | 55.0% | |
| GCCGAAACTGTTTGCGTCAC+AGG | + | chr1.3:2513317-2513336 | MS.gene26989:CDS | 55.0% | |
| GGAGAGTGAAGATGACTGGC+TGG | + | chr1.3:2515921-2515940 | MS.gene26989:CDS | 55.0% | |
| GTCATGAGACTCATGGAGCG+CGG | + | chr1.3:2513368-2513387 | MS.gene26989:CDS | 55.0% | |
| GTCTGCCCTCCCTTGTATTG+TGG | - | chr1.3:2514202-2514221 | None:intergenic | 55.0% | |
| TATGGGTACCTCAGGGTCCT+TGG | - | chr1.3:2513772-2513791 | None:intergenic | 55.0% | |
| TGGGAGCAAATCCTCTCTCG+TGG | - | chr1.3:2515557-2515576 | None:intergenic | 55.0% | |
| TGTTTGCGTCACAGGGGCTT+CGG | + | chr1.3:2513325-2513344 | MS.gene26989:CDS | 55.0% | |
| ! | ACAGGGGCTTCGGGTTTCAT+CGG | + | chr1.3:2513335-2513354 | MS.gene26989:CDS | 55.0% |
| ! | CTTCGGGTTTCATCGGGTCA+TGG | + | chr1.3:2513342-2513361 | MS.gene26989:CDS | 55.0% |
| ! | GAGAGAGGATTTGCTCCCAC+TGG | + | chr1.3:2515558-2515577 | MS.gene26989:intron | 55.0% |
| ! | GAGGTGCCACAATACAAGGG+AGG | + | chr1.3:2514193-2514212 | MS.gene26989:intron | 55.0% |
| GTGGCACCTCCCTTGAATCG+TGG | - | chr1.3:2514183-2514202 | None:intergenic | 60.0% | |
| GTTTGCGTCACAGGGGCTTC+GGG | + | chr1.3:2513326-2513345 | MS.gene26989:CDS | 60.0% | |
| ! | CAGGGGCTTCGGGTTTCATC+GGG | + | chr1.3:2513336-2513355 | MS.gene26989:CDS | 60.0% |
| CGAGCAACAGTCCGCGACCC+AGG | + | chr1.3:2513401-2513420 | MS.gene26989:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 2513305 | 2516911 | 2513305 | ID=MS.gene26989 |
| chr1.3 | mRNA | 2513305 | 2516911 | 2513305 | ID=MS.gene26989.t1;Parent=MS.gene26989 |
| chr1.3 | exon | 2513305 | 2513422 | 2513305 | ID=MS.gene26989.t1.exon1;Parent=MS.gene26989.t1 |
| chr1.3 | CDS | 2513305 | 2513422 | 2513305 | ID=cds.MS.gene26989.t1;Parent=MS.gene26989.t1 |
| chr1.3 | exon | 2513613 | 2513782 | 2513613 | ID=MS.gene26989.t1.exon2;Parent=MS.gene26989.t1 |
| chr1.3 | CDS | 2513613 | 2513782 | 2513613 | ID=cds.MS.gene26989.t1;Parent=MS.gene26989.t1 |
| chr1.3 | exon | 2515749 | 2515943 | 2515749 | ID=MS.gene26989.t1.exon3;Parent=MS.gene26989.t1 |
| chr1.3 | CDS | 2515749 | 2515943 | 2515749 | ID=cds.MS.gene26989.t1;Parent=MS.gene26989.t1 |
| chr1.3 | exon | 2516087 | 2516246 | 2516087 | ID=MS.gene26989.t1.exon4;Parent=MS.gene26989.t1 |
| chr1.3 | CDS | 2516087 | 2516246 | 2516087 | ID=cds.MS.gene26989.t1;Parent=MS.gene26989.t1 |
| chr1.3 | exon | 2516433 | 2516625 | 2516433 | ID=MS.gene26989.t1.exon5;Parent=MS.gene26989.t1 |
| chr1.3 | CDS | 2516433 | 2516625 | 2516433 | ID=cds.MS.gene26989.t1;Parent=MS.gene26989.t1 |
| chr1.3 | exon | 2516725 | 2516911 | 2516725 | ID=MS.gene26989.t1.exon6;Parent=MS.gene26989.t1 |
| chr1.3 | CDS | 2516725 | 2516911 | 2516725 | ID=cds.MS.gene26989.t1;Parent=MS.gene26989.t1 |
| Gene Sequence |
| Protein sequence |
