AlfalfaGEDB | MS.gene27643

M. sativa cultivar XinJiangDaYe / MS.gene27643

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008168 GO:0016740 GO:0016741
PFAM: PF03141.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27643.t1	XP_003623835.1	92.3	638	49	0	1	638	1	638	0.00E+00	1204.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27643.t1	O80844	73.2	563	147	2	76	634	62	624	5.2e-265	914.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27643.t1	A2Q5C6	92.3	638	49	0	1	638	1	638	0.0e+00	1204.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene05104	MS.gene27643	0.818662	1.74E-52	-1.69E-46
MS.gene051517	MS.gene27643	0.803262	3.79E-49	-1.69E-46
MS.gene051552	MS.gene27643	0.814954	1.18E-51	-1.69E-46
MS.gene051973	MS.gene27643	0.843841	1.09E-58	-1.69E-46
MS.gene05240	MS.gene27643	0.804122	2.51E-49	-1.69E-46
MS.gene05470	MS.gene27643	-0.803462	3.45E-49	-1.69E-46
MS.gene054742	MS.gene27643	0.811489	6.82E-51	-1.69E-46
MS.gene056224	MS.gene27643	0.802706	4.94E-49	-1.69E-46
MS.gene056678	MS.gene27643	0.803333	3.66E-49	-1.69E-46
MS.gene056688	MS.gene27643	0.808496	3.01E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene27643.t1	MTR_7g076170	96.082	638	25	0	1	638	1	638	1295
MS.gene27643.t1	MTR_8g432680	74.882	633	155	4	4	633	7	638	1008
MS.gene27643.t1	MTR_0019s0120	63.550	631	215	6	7	633	15	634	851
MS.gene27643.t1	MTR_1g101370	62.698	630	219	7	1	626	1	618	832
MS.gene27643.t1	MTR_8g100075	58.880	625	234	6	18	634	20	629	773
MS.gene27643.t1	MTR_4g098890	57.143	616	233	8	12	622	11	600	735
MS.gene27643.t1	MTR_8g055840	55.172	609	246	6	23	627	17	602	715
MS.gene27643.t1	MTR_0019s0120	62.524	531	184	6	7	533	15	534	697
MS.gene27643.t1	MTR_5g040360	53.571	616	255	7	18	627	11	601	688
MS.gene27643.t1	MTR_3g040370	51.929	622	263	7	10	627	10	599	662

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene27643.t1	AT2G45750	68.971	622	179	4	18	635	14	625	921
MS.gene27643.t1	AT4G00750	68.297	634	183	6	4	633	11	630	918
MS.gene27643.t1	AT4G10440	60.267	599	230	3	29	627	28	618	777
MS.gene27643.t1	AT1G33170	57.643	628	241	5	19	628	17	637	774
MS.gene27643.t1	AT1G26850	56.650	609	244	5	22	627	19	610	727
MS.gene27643.t1	AT1G26850	56.650	609	244	5	22	627	19	610	727
MS.gene27643.t1	AT4G18030	56.260	615	248	8	14	627	11	605	705
MS.gene27643.t1	AT2G43200	52.500	520	241	4	102	620	92	606	584
MS.gene27643.t1	AT2G43200	52.500	520	241	4	102	620	92	606	584
MS.gene27643.t1	AT1G26850	54.183	502	210	5	22	520	19	503	564

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Find 193 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCATCAACCTTAAAGA+TGG	0.440201	7.2:+29625494	MS.gene27643:CDS
AAACTTCCACTGCTAATCCT+TGG	0.531039	7.2:-29628115	None:intergenic
AAATTAGTTTGTGGGCAATC+AGG	0.386232	7.2:-29625041	None:intergenic
AACCGGTGTCTAAAGCGGTT+CGG	0.547844	7.2:-29625523	None:intergenic
AACGCGCCGGTATGTGACGT+CGG	0.682271	7.2:+29625152	MS.gene27643:CDS
AACTCATCAACCTTAAAGAT+GGG	0.532726	7.2:+29625495	MS.gene27643:CDS
AACTCTCTTCTTCCATAACT+CGG	0.594085	7.2:-29628173	None:intergenic
AAGAGGAGATTCTCCGGTGT+CGG	0.594261	7.2:+29625267	MS.gene27643:CDS
AAGCGTGATGGAAGAAGTAG+TGG	0.611496	7.2:-29625072	None:intergenic
AAGGATTAGCAGTGGAAGTT+TGG	0.319848	7.2:+29628117	MS.gene27643:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTCATCAACCTTAAAGA+TGG	+	chr7.2:29625494-29625513	MS.gene27643:CDS	30.0%
AAAGGGAATGTAGGTTAATT+GGG	+	chr7.2:29625840-29625859	MS.gene27643:intron	30.0%
AACTCATCAACCTTAAAGAT+GGG	+	chr7.2:29625495-29625514	MS.gene27643:CDS	30.0%
AAGATATTGAATTGTGACCA+CGG	+	chr7.2:29627529-29627548	MS.gene27643:intron	30.0%
ACCAAAAAAAACTGATGTCA+CGG	+	chr7.2:29627627-29627646	MS.gene27643:intron	30.0%
ACTTGATATGAATGCTTACA+TGG	+	chr7.2:29628252-29628271	MS.gene27643:CDS	30.0%
ATCAGCATGTATAAAGTCAT+AGG	-	chr7.2:29629067-29629086	None:intergenic	30.0%
CAAACTCTTTATCATCTAAG+TGG	-	chr7.2:29627823-29627842	None:intergenic	30.0%
CAAGGATATATTTACCATTC+TGG	-	chr7.2:29627086-29627105	None:intergenic	30.0%
CAAGTAACTAAAGAGAAAAG+GGG	-	chr7.2:29627950-29627969	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	29624855	29629471	29624855	ID=MS.gene27643
chr7.2	mRNA	29624855	29629471	29624855	ID=MS.gene27643.t1;Parent=MS.gene27643
chr7.2	exon	29624855	29625550	29624855	ID=MS.gene27643.t1.exon1;Parent=MS.gene27643.t1
chr7.2	CDS	29624855	29625550	29624855	ID=cds.MS.gene27643.t1;Parent=MS.gene27643.t1
chr7.2	exon	29626880	29627090	29626880	ID=MS.gene27643.t1.exon2;Parent=MS.gene27643.t1
chr7.2	CDS	29626880	29627090	29626880	ID=cds.MS.gene27643.t1;Parent=MS.gene27643.t1
chr7.2	exon	29627186	29627483	29627186	ID=MS.gene27643.t1.exon3;Parent=MS.gene27643.t1
chr7.2	CDS	29627186	29627483	29627186	ID=cds.MS.gene27643.t1;Parent=MS.gene27643.t1
chr7.2	exon	29628006	29628398	29628006	ID=MS.gene27643.t1.exon4;Parent=MS.gene27643.t1
chr7.2	CDS	29628006	29628398	29628006	ID=cds.MS.gene27643.t1;Parent=MS.gene27643.t1
chr7.2	exon	29629035	29629112	29629035	ID=MS.gene27643.t1.exon5;Parent=MS.gene27643.t1
chr7.2	CDS	29629035	29629112	29629035	ID=cds.MS.gene27643.t1;Parent=MS.gene27643.t1
chr7.2	exon	29629231	29629471	29629231	ID=MS.gene27643.t1.exon6;Parent=MS.gene27643.t1
chr7.2	CDS	29629231	29629471	29629231	ID=cds.MS.gene27643.t1;Parent=MS.gene27643.t1

Gene Sequence

>MS.gene27643

ATGGCTAATTCTTTCTTATCAATTTTCAACAAGAAACCCAACAAACCTCTCTCAAGACTCTACTTTCTCACCTTCACCATCATCCTCTGCACCTTTTTTTACCTCCTTGGCCTCTGGCAAAACTCCTCCACCACCACCTCCGCCGCCATCTCCGGCAACAATCACCACTCCACCACCATCATCCGCCCTGATTGCCCACAAACTAATTTCACCTCCACCACTACTTCTTCCATCACGCTTGATTTTTCAGCCCATCATAACGTCCCCGACCCACCAGAATCCGCAGCGCGTGTGACTAACGCGCCGGTATGTGACGTCGGTTTATCGGAGTATACTCCGTGTGAGGACGTGCAGCGGTCGTTGAAATTTCCTCGGGAGAATTTAATTTATCGTGAGAGACACTGTCCGGAGAAAGAGGAGATTCTCCGGTGTCGGATACCGGCACCATATGGCTACCGCATTCCGCCGCGGTGGCCTGAGAGCCGTGATTGGGCTTGGTATGCTAATGTGCCACATAAAGAATTGACGATTGAGAAAAAAAACCAAAATTGGGTTCATTTTGAAGGTGACCGGTTCAGGTTTCCTGGTGGTGGGACCATGTTTCCACGTGGCGCTGGTGCATACATTGATGATATCGGAAAACTCATCAACCTTAAAGATGGGTCCGTCCGAACCGCTTTAGACACCGGTTGTGGGGTACGTTTTTCTTGAACTCCCGGTTTAAGTTTTCTTGAACCGGTTTCTTTTACTATCATGCATGCATGTTTTCATTTTCAATGTCAATGAACCGGGTGGTTCACTTCCCCTCTATGGTTAGTTCAACAACATTCGTAGAAAAATGAACCATGAGCAGGAATGTGATTGGTCCCCTATTCAAGGTTTGGACCCAACCAATTGAAAAATTTCAATTAACTTTTTTAGGTTGATTTTAGTTTTGGTAATATTTTTTGAGATTTTATCTTTATTTAGAACGTTTGAGAATTGGAAAGGGAATGTAGGTTAATTGGGAATCTAAATTAATAAATATTGTATATTTTATTAATATTTTCTTTCCTTAGTTGCTTCCAGGAATCGTTTCTTATGAAAAATTTTATAAATGTATATGATTTTGGTAAGTTTATATGAAATGAAAATTGTATATAATTTTGGTAATCATTGTGCAAAACAGACGGGATACAGATTAATTTTATATTTCAGCATTTTCTCTCAAGTTTTGTAATTTTTTATTTATAGTAATTATAATATAAATTTTCCTACATTTGACTTTATTTTTCTGATATTTTCTAATTGTTCGTGAATACGTCAATCATGTTCTCTATGTCAATATTTTATTTCTGTTTCTAGTCTATTATTGTGACTTAGTTGGCTATCTTATCCTATAGACGTGACGAAATTTTCTTTAAACACTAAACTAAAAATGGATATGTTATAATTCGATATATATGGACCATGCTTTGAAATTGAAATATACAGTAGTTTTTTGACAAAGAAAATTGATATATAGTTAGTTAAGGTATGTTGGTCGTCACATCATAGACTCAACCGTAAATCTATCCTTTTCGTAGAGAGAAAAAGGGGAACATATAGGTATCACTTTAGAACTAGAACTAGTTTGCAAAACAATCTTCTTAAATTCTTGGAACTGAAGTAAAGTAGTTTCATGTTGACTAATGAGATAAAACAAAAAGTTACATTTTATATATTAGACTATGCATTATTAACAACTAAATTGTATTTTTTTTGAAGGAAACTATATTGTATTTTGAATTTCAAATTCACTTAGTGTTAATCATAACGATAAATATATTTTGAATTTGAAGTTTATATTGTTTGTTGGGAAGTCTCAATCATGTATATTTAGCCTGATTTCTAAGTTACTTCATGTTGCGGCAATATGTTTACTAGTCACATGTGCACAAATTTGTTGTATCACTGGAAATTTCAAAGTAAAAGTACTTTTTAATCAGCTTAAGTTACAAATATTTTAATTGGTTAATGACATGTTGTTACAATTGAATTAATCAGGTTGCAAGTTGGGGAGCATATCTTTTGCCACGTGACATATTAGCAGTGTCATTTGCACCAAGAGATACACATGAAGCTCAAGTTCAATTTGCTCTTGAACGAGGAGTTCCAGCTTTGATTGGTGTCATTGCCACAATTAGGCTTCCTTACCCTTCAAGAGCCTTTGACATGGCTCATTGCTCACGTTGCCTAATTCCTTGGGGCCAGAATGGTAAATATATCCTTGTCGTGTGCCCGACAAATTTTAATTTGAAAGCAAGTGTGTGTGAATATGTGACTTATAAATTTTGTTTTATGTATTTGTAGATGGAATTTATTTAACTGAAGTTGATAGAGTGCTACGTCCTGGAGGGTATTGGATTCTATCAGGGCCACCAATAAATTGGGAGAGCCATTGGAAAGGGTGGGAGAGGACTCGTGAGGATCTAAATGCTGAACAGACTTCAATTGAGAGAGTGGCAAAAAGTCTTTGTTGGAAAAAACTAGTTCAGAAGGGTGACATTGCAATATGGCAAAAGCCTACTAATCATATTCATTGCAAAATAACAAGAAAGGTCTTCAAGAATAGACCCTTTTGTGATGCAAAGGATCCTGACTCAGCATGGTAATATACCTTTTCCTATTCTTTTAAATATTAATTAATGCCTTTAAGATATTGAATTGTGACCACGGTCGCAATCGAGAATTCAAGATCAGTTTGTGATCGTTAAGATTGCGGAGAATTTTGGTCAAATGAGACTGATATGGACCAAAAAAAACTGATGTCACGGTCGCGGATTTTTTTTATAAGGCACTCATAACTTTATTGACAATTTTCAGATTATGTCACACTGACTCACTTATAGTTGCTTGTGCTACTGATTTTGCTTTTACAGTTAGAAAAAAAAAAAAAAAGCAGTTTATGCTTGCTGCCAAATAGAGTTTGGCAGTGATACCAAAACCACTTAGATGATAAAGAGTTTGAGTTGCATAATCTATTTATTTGTTAGTTGGTTTATGCACCTTTTCGAAAGTGGAGATTCTTTTTGGACCATTCCAAAAAAAATAATTTATTTGTTTGCTTTATTCCCCTTTTCTCTTTAGTTACTTGTTCTTGAAGTTTTAAATTTTCTTTTCTTCATTTTAGGTACACCAAAATGGATACATGTTTGACACCACTTCCTGAGGTATCTGACATAAAAGAAGTTAGTGGTGGAGGATTGTCCAATTGGCCTGAGAGACTAACATCAGTTCCACCAAGGATTAGCAGTGGAAGTTTGGATGGAATCACAGCTGAGATGTTCAAAGAAAATACCGAGTTATGGAAGAAGAGAGTTGCATACTACAAGACACTTGATTATCAGCTAGCAGAGCCGGGGAGATACCGTAATTTACTTGATATGAATGCTTACATGGGAGGATTTGCAGCTGCAATGATTGATGATCCAGTTTGGGTCATGAATATTGTTCCGGTCCAGGCTGAGATCAACACACTTGGTGTCGTTTATGAACGCGGATTGATCGGAACATATCAGAACTGGTAAGTCTTTATTCCCTTTCTAATAGCAGTTGTTAACTAGGTTTTGTGACATGTATTTAGTTCTTAACCAACCAATTTTAAAGAAAGGTAAATAAATATGTGATAACTTTTGAACTCATTTTGAGTTTTTAAGAGAGTTGTATTGTTAGAGTGAGAAACTGATTACAAAAAATGAGAGAGGTTTGCTAAAGGAAACAAAATGTTGATTAGTTTAGTAGAAAGTAGCTTTTTGATAGCATAATTAGATTTGCAGCATACTCTTTCAATAAGTGAGTAGTATATTATATGTAACGTGCATAAGTGTTGTATCCACCAATAATTAAATTTAAAGTGCATCCTAATCTTAGCTCACTAAAATTTAGAGTTGGATAACTTTATAACTGTGCACTTTTGGAGGCAAAACTCACTTTATGTTAATCTTTTTCTATTACTTCCCACTTATAGTATAGCTTTATCGTGAAGATAATTTAATTGCAAATTATCTCTTCAGATCTATGAGTGCTACCTAATTTTGTCCTTGACAATAGACAGAAAATTGTGAATCAGATCTAGTACAAATTTTGTGCTGCTTTACACATTTCATCACATGGTAGTAGTTAATGTTTCATTAATAAACTGCTTTTTGTCTCCACCCAGGTGTGAAGCCATGTCCACTTATCCTCGAACCTATGACTTTATACATGCTGATTCTCTTTTTACCCTCTATGAGGACAGGTAAATTGTAAAATTGGTTTTGCCAAATTCAGAAATAACTATTTAAATTGTGACTATGTATATAAAATATGTTTACCACTCATATAATAACTTTGTGAAATTATTTAATGTGTGACAGATGTAATATAGAGGACATTCTTCTTGAGATGGATAGGATATTGAGGCCACAAGGGAGTGTGATATTGCGTGATGATGTGGATGTGTTGTTGAAGGTAAAAAGATTTGCAGATGCAATGCAATGGGATGCTAGAATTGCAGACCATGAAAAGGGACCACACCAAAGAGAAAAGATACTTGTAGCAGTCAAGCAGTATTGGACATCCCCACAACCTGAACAAAATCAACAAAGAAAGTTATAA

Protein sequence

>MS.gene27643.t1

MANSFLSIFNKKPNKPLSRLYFLTFTIILCTFFYLLGLWQNSSTTTSAAISGNNHHSTTIIRPDCPQTNFTSTTTSSITLDFSAHHNVPDPPESAARVTNAPVCDVGLSEYTPCEDVQRSLKFPRENLIYRERHCPEKEEILRCRIPAPYGYRIPPRWPESRDWAWYANVPHKELTIEKKNQNWVHFEGDRFRFPGGGTMFPRGAGAYIDDIGKLINLKDGSVRTALDTGCGVASWGAYLLPRDILAVSFAPRDTHEAQVQFALERGVPALIGVIATIRLPYPSRAFDMAHCSRCLIPWGQNDGIYLTEVDRVLRPGGYWILSGPPINWESHWKGWERTREDLNAEQTSIERVAKSLCWKKLVQKGDIAIWQKPTNHIHCKITRKVFKNRPFCDAKDPDSAWYTKMDTCLTPLPEVSDIKEVSGGGLSNWPERLTSVPPRISSGSLDGITAEMFKENTELWKKRVAYYKTLDYQLAEPGRYRNLLDMNAYMGGFAAAMIDDPVWVMNIVPVQAEINTLGVVYERGLIGTYQNWCEAMSTYPRTYDFIHADSLFTLYEDRCNIEDILLEMDRILRPQGSVILRDDVDVLLKVKRFADAMQWDARIADHEKGPHQREKILVAVKQYWTSPQPEQNQQRKL