AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28281

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28281.t1 MTR_2g024390 97.354 378 6 3 1 378 1 374 0.0 758
MS.gene28281.t1 MTR_5g085860 64.259 263 79 4 121 378 46 298 6.95e-103 306
MS.gene28281.t1 MTR_1g017080 58.039 255 93 3 118 362 116 366 6.50e-90 276
MS.gene28281.t1 MTR_5g033720 53.878 245 111 1 111 353 62 306 4.24e-83 256
MS.gene28281.t1 MTR_1g084060 49.402 251 107 5 116 353 14 257 6.46e-67 213
MS.gene28281.t1 MTR_1g084060 49.402 251 107 5 116 353 14 257 1.01e-66 214
MS.gene28281.t1 MTR_1g012960 31.890 254 132 6 122 341 174 420 7.07e-37 139
MS.gene28281.t1 MTR_2g461240 30.739 257 149 6 112 341 85 339 5.06e-36 135
MS.gene28281.t1 MTR_3g106400 31.600 250 140 6 122 341 107 355 3.76e-35 132
MS.gene28281.t1 MTR_3g106400 31.600 250 140 6 122 341 107 355 3.94e-35 132
MS.gene28281.t1 MTR_3g106400 29.197 274 163 6 122 365 107 379 8.24e-35 133
MS.gene28281.t1 MTR_4g116545 30.576 278 167 6 90 341 38 315 8.27e-35 131
MS.gene28281.t1 MTR_4g116545 30.824 279 165 7 90 341 38 315 1.28e-34 130
MS.gene28281.t1 MTR_5g011070 28.516 256 142 5 121 341 27 276 2.15e-29 115
MS.gene28281.t1 MTR_4g019450 42.667 75 43 0 269 343 347 421 3.03e-12 68.6
MS.gene28281.t1 MTR_3g112300 39.535 86 46 2 258 343 327 406 7.36e-12 67.0
MS.gene28281.t1 MTR_3g112300 39.535 86 46 2 258 343 327 406 7.63e-12 67.0
MS.gene28281.t1 MTR_7g065050 48.333 60 31 0 284 343 307 366 7.97e-12 67.0
MS.gene28281.t1 MTR_1g023050 39.535 86 46 2 258 343 338 417 1.28e-11 66.6
MS.gene28281.t1 MTR_8g078480 39.560 91 50 3 260 347 554 642 1.59e-11 66.2
MS.gene28281.t1 MTR_3g112290 42.254 71 41 0 273 343 339 409 2.55e-11 65.1
MS.gene28281.t1 MTR_4g051532 46.667 60 32 0 284 343 404 463 2.89e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28281.t1 AT1G62360 79.087 263 49 5 121 378 121 382 1.38e-132 385
MS.gene28281.t1 AT4G08150 52.427 309 125 5 68 362 85 385 1.45e-90 278
MS.gene28281.t1 AT1G23380 49.609 256 109 3 117 362 81 326 1.42e-80 250
MS.gene28281.t1 AT1G70510 50.410 244 121 0 117 360 65 308 3.47e-80 248
MS.gene28281.t1 AT1G23380 49.225 258 109 4 117 362 81 328 1.14e-78 245
MS.gene28281.t1 AT1G70510 49.200 250 123 1 117 362 65 314 6.17e-78 243
MS.gene28281.t1 AT4G32040 27.424 361 220 6 21 341 4 362 5.52e-42 151
MS.gene28281.t1 AT4G32040 27.424 361 220 6 21 341 4 362 6.94e-42 151
MS.gene28281.t1 AT5G25220 32.245 245 140 5 122 341 160 403 4.07e-40 147
MS.gene28281.t1 AT5G25220 32.245 245 140 5 122 341 160 403 4.70e-40 147
MS.gene28281.t1 AT5G11060 31.020 245 143 6 122 341 124 367 9.10e-36 135
MS.gene28281.t1 AT1G62990 30.924 249 142 6 121 341 29 275 1.54e-31 121
MS.gene28281.t1 AT1G75430 49.091 55 28 0 289 343 209 263 2.40e-11 64.3
MS.gene28281.t1 AT5G02030 46.667 60 32 0 284 343 350 409 2.93e-11 65.5
MS.gene28281.t1 AT1G19700 46.667 60 32 0 284 343 353 412 4.50e-11 64.7
MS.gene28281.t1 AT1G19700 46.667 60 32 0 284 343 353 412 4.50e-11 64.7
MS.gene28281.t1 AT1G19700 46.667 60 32 0 284 343 353 412 4.50e-11 64.7
MS.gene28281.t1 AT1G19700 46.667 60 32 0 284 343 353 412 4.50e-11 64.7
MS.gene28281.t1 AT1G19700 46.667 60 32 0 284 343 353 412 4.50e-11 64.7
MS.gene28281.t1 AT4G36870 39.024 82 46 2 264 343 480 559 8.13e-11 64.3
MS.gene28281.t1 AT4G36870 39.024 82 46 2 264 343 480 559 8.13e-11 64.3
MS.gene28281.t1 AT2G27220 45.000 60 33 0 284 343 230 289 9.97e-11 63.5
MS.gene28281.t1 AT2G27220 45.000 60 33 0 284 343 230 289 9.97e-11 63.5

Find 83 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAATATTGTTGTGGTTAT+TGG 0.188379 2.1:-64810342 None:intergenic
TTATTATTGTTAGTGGAATT+AGG 0.210507 2.1:-64810398 None:intergenic
AGAACTTTCCAAACCCTTAA+AGG 0.230018 2.1:+64811062 MS.gene28281:CDS
TCTTATGTGATGGGTGCTTT+TGG 0.272814 2.1:+64810233 MS.gene28281:CDS
AGCAGAAGACAGGGAATTAA+AGG 0.275275 2.1:+64814797 MS.gene28281:CDS
CATAGCTTCCTTTAAGGGTT+TGG 0.275443 2.1:-64811070 None:intergenic
AATTGTTGCCTTGCCTCTTT+TGG 0.282916 2.1:-64814900 None:intergenic
TTGTGGTTATTGGAATTTAT+TGG 0.285636 2.1:-64810332 None:intergenic
TGGTTTAGGTTACTATTTCA+TGG 0.291622 2.1:+64810490 MS.gene28281:CDS
CATCAAAACACTCCTGGTTT+AGG 0.312805 2.1:+64810476 MS.gene28281:CDS
AAAAGCATAGCTTCCTTTAA+GGG 0.321776 2.1:-64811075 None:intergenic
TCTTCTTCTTCAGATAATAT+TGG 0.323037 2.1:+64811138 MS.gene28281:CDS
TATTATTGTTAGTGGAATTA+GGG 0.324374 2.1:-64810397 None:intergenic
TTCTTCTTATTCTTATGTGA+TGG 0.373753 2.1:+64810223 MS.gene28281:CDS
GCAGTTGGATCAGGTTGTTT+AGG 0.376419 2.1:+64810976 MS.gene28281:CDS
GTGATTGTTATTATTGTTAG+TGG 0.377361 2.1:-64810405 None:intergenic
TCAATGGAGGGTAGTTCTAA+TGG 0.389732 2.1:+64810197 None:intergenic
ATCAGAAGCAAATAAACAAC+TGG 0.411205 2.1:+64815798 MS.gene28281:CDS
TCTTCTTATTCTTATGTGAT+GGG 0.426756 2.1:+64810224 MS.gene28281:CDS
CAAGGCAACAATTGCTTGAA+TGG 0.428670 2.1:+64814910 MS.gene28281:CDS
AACCTTGCCACCACTTCACT+TGG 0.434594 2.1:-64810913 None:intergenic
TCCAGCTCTAGATCAGTTCA+TGG 0.439689 2.1:+64811005 MS.gene28281:CDS
GTGAGGATGAGCCATGATCT+TGG 0.442354 2.1:-64810567 None:intergenic
AATTCCCTGTCTTCTGCTTG+AGG 0.446914 2.1:-64814792 None:intergenic
AGAGGTGTTGTTATTACAGT+TGG 0.455218 2.1:-64810432 None:intergenic
AGCAAGAGTTTATGAAGAAA+AGG 0.455849 2.1:+64814862 MS.gene28281:CDS
AGAAAATACAGTGGATACTT+AGG 0.456169 2.1:+64814831 MS.gene28281:CDS
AAGAGGAAGAAGAGCTTCCA+TGG 0.462925 2.1:-64810526 None:intergenic
ACTAAAGGCATCATCATCAT+TGG 0.476116 2.1:-64810281 None:intergenic
TCCTCACTATCACCGTCTCT+TGG 0.481181 2.1:+64810583 MS.gene28281:CDS
TTCAGAGGACATGCAGTTTG+TGG 0.481599 2.1:+64815853 MS.gene28281:CDS
TAGATCCTCAAGCAGAAGAC+AGG 0.488640 2.1:+64814787 MS.gene28281:CDS
TTCTGTCAAATCCAAGATCA+TGG 0.491565 2.1:+64810556 MS.gene28281:CDS
CTTGTAGTGAAGGTGGAGAT+AGG 0.494451 2.1:+64814718 MS.gene28281:CDS
TCAATCAAAGGAAACGGCAC+TGG 0.497928 2.1:+64815825 MS.gene28281:CDS
CTGGCTCTAGCAGAGTCAAC+AGG 0.498247 2.1:+64815770 MS.gene28281:CDS
ATGTGCAACTGCAGTGAGAA+TGG 0.501403 2.1:+64810945 MS.gene28281:CDS
ATTGTTAGTGGAATTAGGGA+TGG 0.507470 2.1:-64810393 None:intergenic
GGTGGAGATGCAGTTGGATC+AGG 0.509504 2.1:+64810967 MS.gene28281:CDS
TTTGACAGAAGAAGAAGAAG+AGG 0.516596 2.1:-64810543 None:intergenic
GGACATGCAGTTTGTGGTGA+TGG 0.522795 2.1:+64815859 MS.gene28281:CDS
GCAGAAGACAGGGAATTAAA+GGG 0.524288 2.1:+64814798 MS.gene28281:CDS
AGCCTACATCAACTGTCAAA+AGG 0.527463 2.1:+64810607 MS.gene28281:CDS
AAAAGGAAAGCTTCCAAAAG+AGG 0.530019 2.1:+64814887 MS.gene28281:CDS
TAGTGGAATTAGGGATGGGA+AGG 0.531021 2.1:-64810388 None:intergenic
GGTTTATCAATCAAAGGAAA+CGG 0.544135 2.1:+64815819 MS.gene28281:CDS
AGTGAAGGTGGAGATAGGAA+TGG 0.544711 2.1:+64814723 MS.gene28281:CDS
ATAACAGGAATCACAGAAGC+TGG 0.544820 2.1:+64815751 MS.gene28281:intron
AATAACCATCAAAACACTCC+TGG 0.547863 2.1:+64810470 MS.gene28281:CDS
TCCATGAACTGATCTAGAGC+TGG 0.552608 2.1:-64811006 None:intergenic
TTGTTAGTGGAATTAGGGAT+GGG 0.555961 2.1:-64810392 None:intergenic
ATGTAATAGTGTGGATGACT+TGG 0.557999 2.1:-64815884 None:intergenic
ACAACTGGTTTATCAATCAA+AGG 0.560044 2.1:+64815813 MS.gene28281:CDS
CACCAAGTGAAGTGGTGGCA+AGG 0.566973 2.1:+64810911 MS.gene28281:CDS
TGATGAGATGAAGTGACTAA+AGG 0.572274 2.1:-64810296 None:intergenic
ATATGATCAGCTTGTAGTGA+AGG 0.580233 2.1:+64814708 MS.gene28281:intron
AAAGGCATCATCATCATTGG+AGG 0.581233 2.1:-64810278 None:intergenic
AAGTCATCCACACTATTACA+TGG 0.581325 2.1:+64815886 MS.gene28281:CDS
CATGGTGTTAGATAGATCCA+TGG 0.582210 2.1:-64815933 None:intergenic
TGTGCAACTGCAGTGAGAAT+GGG 0.589860 2.1:+64810946 MS.gene28281:CDS
GGTTGGAGCACCAAGTGAAG+TGG 0.591898 2.1:+64810903 MS.gene28281:intron
TCTCAGCAATTCATATCCCA+TGG 0.592615 2.1:+64815916 MS.gene28281:CDS
TGTTTGCATTAATATTGTTG+TGG 0.595016 2.1:-64810349 None:intergenic
ACAAACTGCATGTCCTCTGA+AGG 0.595663 2.1:-64815851 None:intergenic
TGATCAGCTTGTAGTGAAGG+TGG 0.598391 2.1:+64814711 MS.gene28281:intron
GTGAGTATTAATTCAATGGA+GGG 0.604163 2.1:+64810185 None:intergenic
GGCAACAATTGCTTGAATGG+TGG 0.608396 2.1:+64814913 MS.gene28281:CDS
ATTAATGCAAACAACATAAG+CGG 0.612067 2.1:+64810359 MS.gene28281:CDS
TCCAAGAGACGGTGATAGTG+AGG 0.612274 2.1:-64810584 None:intergenic
TGGAGCACCAAGTGAAGTGG+TGG 0.614555 2.1:+64810906 MS.gene28281:CDS
GAAAGCTTCCAAAAGAGGCA+AGG 0.624760 2.1:+64814892 MS.gene28281:CDS
TGATGTAGGCTTCCAAGAGA+CGG 0.625494 2.1:-64810595 None:intergenic
ACATTATCCATGTAATAGTG+TGG 0.627160 2.1:-64815893 None:intergenic
ATGGACAACATCAACAACCA+TGG 0.630008 2.1:+64810509 MS.gene28281:CDS
ACGGCACTGGAAGCCTTCAG+AGG 0.633606 2.1:+64815838 MS.gene28281:CDS
GTGGTGCTTACAGATGGGTA+AGG 0.637343 2.1:-64814954 None:intergenic
ATGGTGTTAGATAGATCCAT+GGG 0.639715 2.1:-64815932 None:intergenic
AGATCCTCAAGCAGAAGACA+GGG 0.640900 2.1:+64814788 MS.gene28281:CDS
ATGAAATAGTAACCTAAACC+AGG 0.642596 2.1:-64810488 None:intergenic
CCGAGGTAATAACTAGAGCA+TGG 0.644204 2.1:-64815951 None:intergenic
AGAATGGGTGGAGATGCAGT+TGG 0.655702 2.1:+64810961 MS.gene28281:CDS
GCAACTGCAGTGAGAATGGG+TGG 0.659150 2.1:+64810949 MS.gene28281:CDS
GGTGGAGCAGACATTACAAG+TGG 0.680780 2.1:+64814931 MS.gene28281:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATATATTTAAAAAAA+AGG - chr2.1:64814290-64814309 None:intergenic 0.0%
!! AAATTTAATTAGAAATATTG+TGG - chr2.1:64815014-64815033 None:intergenic 10.0%
!! ATTCTAATAATTAATAACAA+TGG + chr2.1:64813255-64813274 MS.gene28281:intron 10.0%
!! TTTGAATATATGAAAATAAA+AGG - chr2.1:64814634-64814653 None:intergenic 10.0%
!!! ACTTCAATTTAATTTAATTA+AGG - chr2.1:64811493-64811512 None:intergenic 10.0%
!! AAATAATAACCAATGAATTA+GGG + chr2.1:64812038-64812057 MS.gene28281:intron 15.0%
!! GTGAATGTTTAATTAAATAA+AGG - chr2.1:64813805-64813824 None:intergenic 15.0%
!! TAAATAATAACCAATGAATT+AGG + chr2.1:64812037-64812056 MS.gene28281:intron 15.0%
!! TAAATATAGAAATCTAACAT+TGG - chr2.1:64814318-64814337 None:intergenic 15.0%
!! TACTATAATTTATGAATAAC+AGG + chr2.1:64815736-64815755 MS.gene28281:intron 15.0%
!! TTGTCAATATTAGTAATAAA+TGG - chr2.1:64810772-64810791 None:intergenic 15.0%
!!! AAGTTTTTTTATGTTTTGAA+GGG - chr2.1:64812983-64813002 None:intergenic 15.0%
!!! GTTAATTGTTTCTTATAATA+AGG + chr2.1:64813427-64813446 MS.gene28281:intron 15.0%
!!! TAAGAAACAATTAACTTTTT+TGG - chr2.1:64813422-64813441 None:intergenic 15.0%
!!! TTCATAAATTTTTTACTTCA+TGG + chr2.1:64810869-64810888 MS.gene28281:intron 15.0%
!! AAACATGTATAATTGATAAG+TGG - chr2.1:64813012-64813031 None:intergenic 20.0%
!! AAACATTGAATTGAAAACTT+TGG - chr2.1:64812862-64812881 None:intergenic 20.0%
!! AATAAAATATTCCATCCATA+GGG - chr2.1:64812395-64812414 None:intergenic 20.0%
!! AATACATGTTTATATGGTTA+GGG - chr2.1:64815620-64815639 None:intergenic 20.0%
!! AGGTTAAAATATTAACAATG+TGG - chr2.1:64814270-64814289 None:intergenic 20.0%
!! ATGATATACTACAAAAATAG+AGG - chr2.1:64812907-64812926 None:intergenic 20.0%
!! ATTAATATTGTTGTGGTTAT+TGG - chr2.1:64810345-64810364 None:intergenic 20.0%
!! ATTACTTCAAACATAATCAA+AGG - chr2.1:64813281-64813300 None:intergenic 20.0%
!! ATTTATTAAAATCCGTAACT+AGG - chr2.1:64815064-64815083 None:intergenic 20.0%
!! CAAAATACTTAACTTATGAA+GGG - chr2.1:64813557-64813576 None:intergenic 20.0%
!! CTAAGATAATCTTTCTATAT+AGG - chr2.1:64813073-64813092 None:intergenic 20.0%
!! CTATATAGAAAGATTATCTT+AGG + chr2.1:64813071-64813090 MS.gene28281:intron 20.0%
!! GCAAATAATATAACATTAGA+AGG - chr2.1:64814661-64814680 None:intergenic 20.0%
!! GTAGTACATATATATTTCAT+TGG + chr2.1:64811717-64811736 MS.gene28281:intron 20.0%
!! TAATAAAATATTCCATCCAT+AGG - chr2.1:64812396-64812415 None:intergenic 20.0%
!! TACATAAAAGTAAACCAATA+AGG - chr2.1:64813961-64813980 None:intergenic 20.0%
!! TATTATCATAGGGATAAAAA+TGG - chr2.1:64813466-64813485 None:intergenic 20.0%
!! TATTATTGTTAGTGGAATTA+GGG - chr2.1:64810400-64810419 None:intergenic 20.0%
!! TCCTATAATCAAATATATGT+GGG - chr2.1:64814074-64814093 None:intergenic 20.0%
!! TCTATATCAAATGTGTAAAT+TGG + chr2.1:64815377-64815396 MS.gene28281:intron 20.0%
!! TGATATACTACAAAAATAGA+GGG - chr2.1:64812906-64812925 None:intergenic 20.0%
!! TTATTATTGTTAGTGGAATT+AGG - chr2.1:64810401-64810420 None:intergenic 20.0%
!! TTGTACAATACATGTTTATA+TGG - chr2.1:64815626-64815645 None:intergenic 20.0%
!! TTTATCATCTATGCTTAAAA+GGG - chr2.1:64810824-64810843 None:intergenic 20.0%
!! TTTATGAAGAAAAGGAAAAA+AGG + chr2.1:64814870-64814889 MS.gene28281:CDS 20.0%
!! TTTGCAAATTTGAAAAATCA+TGG - chr2.1:64815229-64815248 None:intergenic 20.0%
!! TTTGTAATGAATCCAAAATT+TGG + chr2.1:64811971-64811990 MS.gene28281:intron 20.0%
!!! AAAATCTGAATAGTATTTTC+TGG - chr2.1:64811210-64811229 None:intergenic 20.0%
!!! AAGACATTGTTTCTTTTTTT+GGG - chr2.1:64811401-64811420 None:intergenic 20.0%
!!! AAGGATTCAAATTTTTAAAG+TGG - chr2.1:64814976-64814995 None:intergenic 20.0%
!!! AATTAAAAATAGGAGTACAA+GGG + chr2.1:64814000-64814019 MS.gene28281:intron 20.0%
!!! ATTTGAAGACTGATTTTTTA+AGG + chr2.1:64815305-64815324 MS.gene28281:intron 20.0%
!!! CAAGTTTTTTTATGTTTTGA+AGG - chr2.1:64812984-64813003 None:intergenic 20.0%
!!! CTTGATAGTATTGTTTTTAT+GGG + chr2.1:64811817-64811836 MS.gene28281:intron 20.0%
!!! GATCGATTTTCTTTATAAAA+TGG - chr2.1:64813140-64813159 None:intergenic 20.0%
!!! GTACAATTTACTTTTTTTGA+AGG + chr2.1:64815640-64815659 MS.gene28281:intron 20.0%
!!! GTCAACTTTTTCTTATAATA+AGG - chr2.1:64813328-64813347 None:intergenic 20.0%
!!! TAAGAAAAAGTTGACTTTTT+AGG + chr2.1:64813333-64813352 MS.gene28281:intron 20.0%
!!! TACTTCATGGATATTATTTT+AGG + chr2.1:64810882-64810901 MS.gene28281:intron 20.0%
!!! TGACTATAAATTGTTTTTAC+CGG + chr2.1:64814466-64814485 MS.gene28281:intron 20.0%
!!! TTACTACTATATACTTCTTT+TGG - chr2.1:64812823-64812842 None:intergenic 20.0%
!!! TTTGATTTCTTTCATTTCAT+AGG + chr2.1:64815032-64815051 MS.gene28281:intron 20.0%
! AAATGCATAGCTTAACTAAA+TGG - chr2.1:64813184-64813203 None:intergenic 25.0%
! AAATGTCATAACATAGAACT+TGG + chr2.1:64814536-64814555 MS.gene28281:intron 25.0%
! AAGCTAAGCTACTAAATTAT+TGG - chr2.1:64813854-64813873 None:intergenic 25.0%
! AATAATTTAGTAGCTTAGCT+TGG + chr2.1:64813853-64813872 MS.gene28281:intron 25.0%
! ACCATGGATATTTGTATATA+TGG - chr2.1:64814218-64814237 None:intergenic 25.0%
! AGTGGAAATCTATTATCATA+GGG - chr2.1:64813476-64813495 None:intergenic 25.0%
! ATATTTGATTATAGGACCTA+AGG + chr2.1:64814078-64814097 MS.gene28281:intron 25.0%
! ATGGATATTTGTATATATGG+GGG - chr2.1:64814215-64814234 None:intergenic 25.0%
! ATTAATGCAAACAACATAAG+CGG + chr2.1:64810359-64810378 MS.gene28281:CDS 25.0%
! ATTACTTACACATGAATAGA+AGG - chr2.1:64814381-64814400 None:intergenic 25.0%
! CAAATGTGTAAATTGGATTT+GGG + chr2.1:64815384-64815403 MS.gene28281:intron 25.0%
! CAATACATGTTTATATGGTT+AGG - chr2.1:64815621-64815640 None:intergenic 25.0%
! CATATATATTTCATTGGTGT+TGG + chr2.1:64811723-64811742 MS.gene28281:intron 25.0%
! CATGGATATTTGTATATATG+GGG - chr2.1:64814216-64814235 None:intergenic 25.0%
! CCAAAATACTTAACTTATGA+AGG - chr2.1:64813558-64813577 None:intergenic 25.0%
! CCATGGATATTTGTATATAT+GGG - chr2.1:64814217-64814236 None:intergenic 25.0%
! CCTATAATCAAATATATGTG+GGG - chr2.1:64814073-64814092 None:intergenic 25.0%
! CTATAATCAAATATATGTGG+GGG - chr2.1:64814072-64814091 None:intergenic 25.0%
! CTTTATCATCTATGCTTAAA+AGG - chr2.1:64810825-64810844 None:intergenic 25.0%
! GAAGAGTTCCAATTAAAAAT+AGG + chr2.1:64813990-64814009 MS.gene28281:intron 25.0%
! GATATACTACAAAAATAGAG+GGG - chr2.1:64812905-64812924 None:intergenic 25.0%
! GTCCTATAATCAAATATATG+TGG - chr2.1:64814075-64814094 None:intergenic 25.0%
! TAAACTCACCATTATTCTTA+AGG - chr2.1:64812309-64812328 None:intergenic 25.0%
! TATAATCAAATATATGTGGG+GGG - chr2.1:64814071-64814090 None:intergenic 25.0%
! TCAAATACTAAATGCATGTT+CGG - chr2.1:64815291-64815310 None:intergenic 25.0%
! TCAAATGTGTAAATTGGATT+TGG + chr2.1:64815383-64815402 MS.gene28281:intron 25.0%
! TCACAAGTTTCTTTCTAAAT+TGG + chr2.1:64812107-64812126 MS.gene28281:intron 25.0%
! TCTTCTTATTCTTATGTGAT+GGG + chr2.1:64810224-64810243 MS.gene28281:CDS 25.0%
! TCTTCTTCTTCAGATAATAT+TGG + chr2.1:64811138-64811157 MS.gene28281:CDS 25.0%
! TGCTTGTCTTTAACTAAAAA+TGG + chr2.1:64812566-64812585 MS.gene28281:intron 25.0%
! TGTTTGCATTAATATTGTTG+TGG - chr2.1:64810352-64810371 None:intergenic 25.0%
! TTCTTCTTATTCTTATGTGA+TGG + chr2.1:64810223-64810242 MS.gene28281:CDS 25.0%
! TTGAAGGAACTTAACTATAT+AGG + chr2.1:64811750-64811769 MS.gene28281:intron 25.0%
! TTGTGGTTATTGGAATTTAT+TGG - chr2.1:64810335-64810354 None:intergenic 25.0%
!! AAAAATCTTGCAAAGTTGAT+TGG + chr2.1:64812233-64812252 MS.gene28281:intron 25.0%
!! AAACTGTAAGATTTTTGAAC+TGG - chr2.1:64811119-64811138 None:intergenic 25.0%
!! AAGCTACTAAATTATTGGTT+AGG - chr2.1:64813849-64813868 None:intergenic 25.0%
!! ACTATGTTTGTTAACCTTAT+TGG + chr2.1:64813944-64813963 MS.gene28281:intron 25.0%
!! AGAAAGATTATCTTAGGTTT+TGG + chr2.1:64813077-64813096 MS.gene28281:intron 25.0%
!! AGTTGTTTGCATTAATTTGA+AGG + chr2.1:64815338-64815357 MS.gene28281:intron 25.0%
!! ATCAAAATGGTTAGGATTTT+TGG - chr2.1:64814241-64814260 None:intergenic 25.0%
!! ATTAAAAATAGGAGTACAAG+GGG + chr2.1:64814001-64814020 MS.gene28281:intron 25.0%
!! CAATTAAAAATAGGAGTACA+AGG + chr2.1:64813999-64814018 MS.gene28281:intron 25.0%
!! CCTTCATAAGTTAAGTATTT+TGG + chr2.1:64813555-64813574 MS.gene28281:intron 25.0%
!! CTTTTTCTTATAATAAGGAC+CGG - chr2.1:64813323-64813342 None:intergenic 25.0%
!! GCATTTTTGTCTGAAAATAA+AGG + chr2.1:64811678-64811697 MS.gene28281:intron 25.0%
!! GTGATTGTTATTATTGTTAG+TGG - chr2.1:64810408-64810427 None:intergenic 25.0%
!! GTGGATTTTAGATTATGATA+TGG + chr2.1:64812196-64812215 MS.gene28281:intron 25.0%
!! TATTTGGAACTCACTTATTT+AGG - chr2.1:64811630-64811649 None:intergenic 25.0%
!! TCAAAATCTGCATTGATATT+TGG + chr2.1:64815512-64815531 MS.gene28281:intron 25.0%
!! TTAAAATTTCCCTTTTGATG+AGG + chr2.1:64811878-64811897 MS.gene28281:intron 25.0%
!! TTAAGCTATGCATTTTTCTT+CGG + chr2.1:64813189-64813208 MS.gene28281:intron 25.0%
!! TTGTTTCTTATAATAAGGAC+CGG + chr2.1:64813432-64813451 MS.gene28281:intron 25.0%
!! TTTAACTTTGTCTTCTTTGA+AGG + chr2.1:64813614-64813633 MS.gene28281:intron 25.0%
!! TTTTCTATGATGTTCATTGT+TGG + chr2.1:64812611-64812630 MS.gene28281:intron 25.0%
!!! ATAATTGTACTTTGAAACTG+TGG + chr2.1:64810730-64810749 MS.gene28281:intron 25.0%
!!! ATTTTAATGTTCTGTTTACG+AGG + chr2.1:64814337-64814356 MS.gene28281:intron 25.0%
!!! CAAGACATTGTTTCTTTTTT+TGG - chr2.1:64811402-64811421 None:intergenic 25.0%
!!! CATAGCTTAATCTCTTTTTT+AGG - chr2.1:64812272-64812291 None:intergenic 25.0%
!!! CTTGTACTCCTATTTTTAAT+TGG - chr2.1:64814001-64814020 None:intergenic 25.0%
!!! CTTTTTTTGTTTGACAAGTT+TGG + chr2.1:64810688-64810707 MS.gene28281:intron 25.0%
!!! GCTTGATAGTATTGTTTTTA+TGG + chr2.1:64811816-64811835 MS.gene28281:intron 25.0%
!!! TAATTGTACTTTGAAACTGT+GGG + chr2.1:64810731-64810750 MS.gene28281:intron 25.0%
!!! TCATGGATATTATTTTAGGT+TGG + chr2.1:64810886-64810905 MS.gene28281:intron 25.0%
AACCTTATCACATAATGCAT+TGG + chr2.1:64812737-64812756 MS.gene28281:intron 30.0%
AATGTGGAGTGAAATCAAAA+TGG - chr2.1:64814254-64814273 None:intergenic 30.0%
ACAGTGTAATCTTAATGAGA+AGG - chr2.1:64813231-64813250 None:intergenic 30.0%
ACATTATCCATGTAATAGTG+TGG - chr2.1:64815896-64815915 None:intergenic 30.0%
AGAAAATACAGTGGATACTT+AGG + chr2.1:64814831-64814850 MS.gene28281:CDS 30.0%
AGACAAAAATGCATGAGTTA+AGG - chr2.1:64811670-64811689 None:intergenic 30.0%
AGCAAGAGTTTATGAAGAAA+AGG + chr2.1:64814862-64814881 MS.gene28281:CDS 30.0%
AGCTAGTTGAAATAGTATCA+TGG + chr2.1:64813905-64813924 MS.gene28281:intron 30.0%
ATAATATATTGTACTCCCTC+CGG + chr2.1:64813301-64813320 MS.gene28281:intron 30.0%
ATCAGAAGCAAATAAACAAC+TGG + chr2.1:64815798-64815817 MS.gene28281:CDS 30.0%
ATCCAATGCATTATGTGATA+AGG - chr2.1:64812742-64812761 None:intergenic 30.0%
ATGAAATAGTAACCTAAACC+AGG - chr2.1:64810491-64810510 None:intergenic 30.0%
CAGTGGAAATCTATTATCAT+AGG - chr2.1:64813477-64813496 None:intergenic 30.0%
CATCATAGAAAAATGCATGT+AGG - chr2.1:64812603-64812622 None:intergenic 30.0%
CCCATATATACAAATATCCA+TGG + chr2.1:64814214-64814233 MS.gene28281:intron 30.0%
CCCCACATATATTTGATTAT+AGG + chr2.1:64814070-64814089 MS.gene28281:intron 30.0%
CTATGATAATAGATTTCCAC+TGG + chr2.1:64813475-64813494 MS.gene28281:intron 30.0%
GAAAACTTTGGATCAATATG+TGG - chr2.1:64812850-64812869 None:intergenic 30.0%
GACAAAAATGCATGAGTTAA+GGG - chr2.1:64811669-64811688 None:intergenic 30.0%
GCAAATTTGAAAAATCATGG+TGG - chr2.1:64815226-64815245 None:intergenic 30.0%
GGTTTATCAATCAAAGGAAA+CGG + chr2.1:64815819-64815838 MS.gene28281:CDS 30.0%
GTAATGAATCCAAAATTTGG+AGG + chr2.1:64811974-64811993 MS.gene28281:intron 30.0%
TAACTAACTCCAAGTTTGTA+AGG + chr2.1:64813103-64813122 MS.gene28281:intron 30.0%
TAAGACAGTACATTACTACA+AGG - chr2.1:64812960-64812979 None:intergenic 30.0%
TAATTAAACATTCACCCTTG+TGG + chr2.1:64813810-64813829 MS.gene28281:intron 30.0%
TAATTTGGCATTCAGTTACT+TGG - chr2.1:64814166-64814185 None:intergenic 30.0%
TAGTAGGTCCTTAAGAATAA+TGG + chr2.1:64812298-64812317 MS.gene28281:intron 30.0%
TCAAATGTTAACCTTCAATG+TGG + chr2.1:64813739-64813758 MS.gene28281:intron 30.0%
TGAAGGTTAACATTTGAACT+AGG - chr2.1:64813736-64813755 None:intergenic 30.0%
TGTCTGAAAATAAAGGTAGA+TGG + chr2.1:64811685-64811704 MS.gene28281:intron 30.0%
TTAAGCTATGATGTGTTAGT+AGG + chr2.1:64812282-64812301 MS.gene28281:intron 30.0%
TTATTGCAAAAGCTACACAT+TGG - chr2.1:64815186-64815205 None:intergenic 30.0%
TTCCAAATACTTGAAACCAA+AGG + chr2.1:64811641-64811660 MS.gene28281:intron 30.0%
TTCCTTAAACAATGTCCTTA+GGG - chr2.1:64811378-64811397 None:intergenic 30.0%
TTGGAGCTACAAAAAAATCA+CGG - chr2.1:64815167-64815186 None:intergenic 30.0%
! AAAAAGCATAGCTTCCTTTA+AGG - chr2.1:64811079-64811098 None:intergenic 30.0%
! AAAAGCATAGCTTCCTTTAA+GGG - chr2.1:64811078-64811097 None:intergenic 30.0%
! ACAACTGGTTTATCAATCAA+AGG + chr2.1:64815813-64815832 MS.gene28281:CDS 30.0%
! GGAATCAACTTTTTGCAAAT+CGG + chr2.1:64814557-64814576 MS.gene28281:intron 30.0%
! TGGTTTAGGTTACTATTTCA+TGG + chr2.1:64810490-64810509 MS.gene28281:CDS 30.0%
! TGTTTATATGGTTAGGGTTT+TGG - chr2.1:64815614-64815633 None:intergenic 30.0%
! TTTGTCTTCTTTGAAGGAAA+AGG + chr2.1:64813620-64813639 MS.gene28281:intron 30.0%
! TTTTCTCATTTGTCTCATCA+AGG + chr2.1:64812351-64812370 MS.gene28281:intron 30.0%
!! AGTGATTTGCTAAAATTGTG+TGG + chr2.1:64815138-64815157 MS.gene28281:intron 30.0%
!! ATGTATATTTTTGTGTCTGC+AGG + chr2.1:64812465-64812484 MS.gene28281:intron 30.0%
!! GACAAATTTTGATACCACAA+GGG - chr2.1:64813827-64813846 None:intergenic 30.0%
!!! AAGCTATGCTTTTTCTTCAA+AGG + chr2.1:64811085-64811104 MS.gene28281:CDS 30.0%
!!! ATTTTGAAGCATGATAGAAG+AGG - chr2.1:64810453-64810472 None:intergenic 30.0%
AAAAGGAAAGCTTCCAAAAG+AGG + chr2.1:64814887-64814906 MS.gene28281:CDS 35.0%
AACATTTGAACTAGGTGCAT+AGG - chr2.1:64813728-64813747 None:intergenic 35.0%
AAGTCATCCACACTATTACA+TGG + chr2.1:64815886-64815905 MS.gene28281:CDS 35.0%
AATAACCATCAAAACACTCC+TGG + chr2.1:64810470-64810489 MS.gene28281:CDS 35.0%
AATGTTCTGTTTACGAGGAT+TGG + chr2.1:64814342-64814361 MS.gene28281:intron 35.0%
ACTCATCCATATACAACCAA+GGG + chr2.1:64814025-64814044 MS.gene28281:intron 35.0%
AGAACTTTCCAAACCCTTAA+AGG + chr2.1:64811062-64811081 MS.gene28281:CDS 35.0%
ATATGATCAGCTTGTAGTGA+AGG + chr2.1:64814708-64814727 MS.gene28281:intron 35.0%
ATCCAAAATTTGGAGGACTT+CGG + chr2.1:64811981-64812000 MS.gene28281:intron 35.0%
ATGTAATAGTGTGGATGACT+TGG - chr2.1:64815887-64815906 None:intergenic 35.0%
ATTGTTAGTGGAATTAGGGA+TGG - chr2.1:64810396-64810415 None:intergenic 35.0%
CAGAAGAAACCCTAATTCAT+TGG - chr2.1:64812050-64812069 None:intergenic 35.0%
CTAAACACCACTCAAAGAAA+AGG + chr2.1:64814117-64814136 MS.gene28281:intron 35.0%
CTACACATCCATTATTTCCA+AGG - chr2.1:64813680-64813699 None:intergenic 35.0%
GCATCTAAACCCTGAAATAA+TGG - chr2.1:64813651-64813670 None:intergenic 35.0%
GCTGAAACTAGCATATATGT+TGG - chr2.1:64813888-64813907 None:intergenic 35.0%
GGAGTGAAATCAAAATGGTT+AGG - chr2.1:64814249-64814268 None:intergenic 35.0%
GTCATATGAATTGCATCCTT+AGG - chr2.1:64814097-64814116 None:intergenic 35.0%
GTGGCAAGAGATTAAGAAAA+AGG - chr2.1:64814995-64815014 None:intergenic 35.0%
GTTCCTTAAACAATGTCCTT+AGG - chr2.1:64811379-64811398 None:intergenic 35.0%
TACTCATCCATATACAACCA+AGG + chr2.1:64814024-64814043 MS.gene28281:intron 35.0%
TATTTCAGGGTTTAGATGCA+TGG + chr2.1:64813652-64813671 MS.gene28281:intron 35.0%
TCAATGATCCACTAAAAGCT+TGG - chr2.1:64812775-64812794 None:intergenic 35.0%
TGATGAGATGAAGTGACTAA+AGG - chr2.1:64810299-64810318 None:intergenic 35.0%
TGGTGCTTATCAAAAAACTG+TGG + chr2.1:64812631-64812650 MS.gene28281:intron 35.0%
TGTAGTATATCATCGTATGC+TGG + chr2.1:64812914-64812933 MS.gene28281:intron 35.0%
TTAAAGTGGTGCTTACAGAT+GGG - chr2.1:64814962-64814981 None:intergenic 35.0%
TTCTGTCAAATCCAAGATCA+TGG + chr2.1:64810556-64810575 MS.gene28281:CDS 35.0%
TTCTTATAATAAGGACCGGA+GGG + chr2.1:64813436-64813455 MS.gene28281:intron 35.0%
TTCTTATAATAAGGACCGGA+GGG - chr2.1:64813455-64813436 None:intergenic 35.0%
TTGGATCAAAATCAGACGAT+TGG + chr2.1:64815454-64815473 MS.gene28281:intron 35.0%
TTGTTAGTGGAATTAGGGAT+GGG - chr2.1:64810395-64810414 None:intergenic 35.0%
TTTCTGTGACCTCATCAAAA+GGG - chr2.1:64811890-64811909 None:intergenic 35.0%
TTTCTTATAATAAGGACCGG+AGG + chr2.1:64813435-64813454 MS.gene28281:intron 35.0%
TTTCTTATAATAAGGACCGG+AGG - chr2.1:64813454-64813435 None:intergenic 35.0%
TTTGACAGAAGAAGAAGAAG+AGG - chr2.1:64810546-64810565 None:intergenic 35.0%
! AAACATGACCAAGCTTTTAG+TGG + chr2.1:64812764-64812783 MS.gene28281:intron 35.0%
! AAAGAGGTAAAGTACTTTCC+TGG + chr2.1:64812160-64812179 MS.gene28281:intron 35.0%
! AAGAGGTAAAGTACTTTCCT+GGG + chr2.1:64812161-64812180 MS.gene28281:intron 35.0%
! ATGGTGTTAGATAGATCCAT+GGG - chr2.1:64815935-64815954 None:intergenic 35.0%
! CACCTTTGGTTTCAAGTATT+TGG - chr2.1:64811646-64811665 None:intergenic 35.0%
! CTCCAAGTTTGTAAGGTTTT+CGG + chr2.1:64813110-64813129 MS.gene28281:intron 35.0%
! CTTTTCTTTGAGTGGTGTTT+AGG - chr2.1:64814119-64814138 None:intergenic 35.0%
! TATGCATTTTTCTTCGGCTT+TGG + chr2.1:64813195-64813214 MS.gene28281:intron 35.0%
! TCCAAGTTTGTAAGGTTTTC+GGG + chr2.1:64813111-64813130 MS.gene28281:intron 35.0%
! TCTAGCTTCCAACTATGTAT+GGG + chr2.1:64812797-64812816 MS.gene28281:intron 35.0%
! TTTAAAGTGGTGCTTACAGA+TGG - chr2.1:64814963-64814982 None:intergenic 35.0%
!! AAAGGAGTGTCCATTATTTC+AGG + chr2.1:64813638-64813657 MS.gene28281:intron 35.0%
!! AAGGAGTGTCCATTATTTCA+GGG + chr2.1:64813639-64813658 MS.gene28281:intron 35.0%
!! ACTAAAGGCATCATCATCAT+TGG - chr2.1:64810284-64810303 None:intergenic 35.0%
!! AGAGGTGTTGTTATTACAGT+TGG - chr2.1:64810435-64810454 None:intergenic 35.0%
!! AGGAAAGTACTTTACCTCTT+TGG - chr2.1:64812161-64812180 None:intergenic 35.0%
!! CAGCTTTTGAGAAAATACAG+TGG + chr2.1:64814822-64814841 MS.gene28281:CDS 35.0%
!! GATTTTGATCCAATGACCTT+TGG - chr2.1:64815447-64815466 None:intergenic 35.0%
!! GGACAAATTTTGATACCACA+AGG - chr2.1:64813828-64813847 None:intergenic 35.0%
!! GTTACTTGGAAGGTATTTCA+TGG - chr2.1:64814152-64814171 None:intergenic 35.0%
!! TCATTGATTCACCACATTGA+AGG - chr2.1:64813753-64813772 None:intergenic 35.0%
!! TTCTAGCTTCCAACTATGTA+TGG + chr2.1:64812796-64812815 MS.gene28281:intron 35.0%
!! TTGAAAAATCATGGTGGACT+TGG - chr2.1:64815220-64815239 None:intergenic 35.0%
!!! TGGTTTTGATTTCTGCATCT+AGG + chr2.1:64813495-64813514 MS.gene28281:intron 35.0%
AAGGGCAAGCTAATTACAAG+GGG + chr2.1:64814043-64814062 MS.gene28281:intron 40.0%
ACCCGAAAACCTTACAAACT+TGG - chr2.1:64813115-64813134 None:intergenic 40.0%
ACCTTTCGATCTTGATCCAA+CGG + chr2.1:64815535-64815554 MS.gene28281:intron 40.0%
AGCAGAAGACAGGGAATTAA+AGG + chr2.1:64814797-64814816 MS.gene28281:CDS 40.0%
AGCCTACATCAACTGTCAAA+AGG + chr2.1:64810607-64810626 MS.gene28281:CDS 40.0%
ATAACAGGAATCACAGAAGC+TGG + chr2.1:64815751-64815770 MS.gene28281:intron 40.0%
ATAACCGTACACTGCCTTTA+GGG + chr2.1:64811451-64811470 MS.gene28281:intron 40.0%
ATAGTAGAGTAGCTCCAAAG+AGG + chr2.1:64812144-64812163 MS.gene28281:intron 40.0%
ATGGACAACATCAACAACCA+TGG + chr2.1:64810509-64810528 MS.gene28281:CDS 40.0%
CAAGGCAACAATTGCTTGAA+TGG + chr2.1:64814910-64814929 MS.gene28281:CDS 40.0%
CAAGGGCAAGCTAATTACAA+GGG + chr2.1:64814042-64814061 MS.gene28281:intron 40.0%
CACATGAATAGAAGGCAAGT+TGG - chr2.1:64814373-64814392 None:intergenic 40.0%
CAGAAACTCTCAGATTTCAC+TGG + chr2.1:64811904-64811923 MS.gene28281:intron 40.0%
CATAGGCAATCACCTAGTTA+CGG + chr2.1:64815049-64815068 MS.gene28281:intron 40.0%
CATAGGGAGTAGTGTTTACA+CGG - chr2.1:64812379-64812398 None:intergenic 40.0%
CATCAAAACACTCCTGGTTT+AGG + chr2.1:64810476-64810495 MS.gene28281:CDS 40.0%
GAGAGGGATTGTCACTAATT+TGG - chr2.1:64814181-64814200 None:intergenic 40.0%
GATAAAAATGGTACTCCCTC+CGG - chr2.1:64813454-64813473 None:intergenic 40.0%
GATGCAGAAATCAAAACCAG+TGG - chr2.1:64813494-64813513 None:intergenic 40.0%
GCAGAAGACAGGGAATTAAA+GGG + chr2.1:64814798-64814817 MS.gene28281:CDS 40.0%
GTTTCTGTGACCTCATCAAA+AGG - chr2.1:64811891-64811910 None:intergenic 40.0%
TAAACACTACTCCCTATGGA+TGG + chr2.1:64812381-64812400 MS.gene28281:intron 40.0%
TAGCGTGACTTGAAAAACCA+TGG - chr2.1:64815266-64815285 None:intergenic 40.0%
TATCCATGCATGTCTGTGTT+TGG + chr2.1:64811279-64811298 MS.gene28281:intron 40.0%
TCTATCTAACACCATGCTCT+AGG + chr2.1:64815940-64815959 MS.gene28281:CDS 40.0%
TCTCAGCAATTCATATCCCA+TGG + chr2.1:64815916-64815935 MS.gene28281:CDS 40.0%
TCTTGTTAACAAGTGCCCTA+AGG + chr2.1:64811360-64811379 MS.gene28281:intron 40.0%
TGACAACTCATGTTTCGACT+TGG + chr2.1:64815097-64815116 MS.gene28281:intron 40.0%
TGATCCAACGGTCAATAATG+TGG + chr2.1:64815547-64815566 MS.gene28281:intron 40.0%
TGCAAATCGGATTGAAGAGT+AGG + chr2.1:64814570-64814589 MS.gene28281:intron 40.0%
TGCCCTAAGGACATTGTTTA+AGG + chr2.1:64811373-64811392 MS.gene28281:intron 40.0%
TGGTGAAGTATACATTCACG+AGG + chr2.1:64813575-64813594 MS.gene28281:intron 40.0%
TTGACCACATTATTGACCGT+TGG - chr2.1:64815554-64815573 None:intergenic 40.0%
TTGGCATTCAGTTACTTGGA+AGG - chr2.1:64814162-64814181 None:intergenic 40.0%
! AATTGTTGCCTTGCCTCTTT+TGG - chr2.1:64814903-64814922 None:intergenic 40.0%
! AGAGGTAAAGTACTTTCCTG+GGG + chr2.1:64812162-64812181 MS.gene28281:intron 40.0%
! CATAGCTTCCTTTAAGGGTT+TGG - chr2.1:64811073-64811092 None:intergenic 40.0%
! CATGGTGTTAGATAGATCCA+TGG - chr2.1:64815936-64815955 None:intergenic 40.0%
! GAAGATTGGTGGGTGAATTT+AGG + chr2.1:64812009-64812028 MS.gene28281:intron 40.0%
! GCAATAGCCTTTTCTTTGAG+TGG - chr2.1:64814127-64814146 None:intergenic 40.0%
! TCTTTTGGCCCATACATAGT+TGG - chr2.1:64812808-64812827 None:intergenic 40.0%
! TTCCGAAGTCCTCCAAATTT+TGG - chr2.1:64811986-64812005 None:intergenic 40.0%
!! AAAGGCATCATCATCATTGG+AGG - chr2.1:64810281-64810300 None:intergenic 40.0%
!! ACTTGGAAGGTATTTCATGG+AGG - chr2.1:64814149-64814168 None:intergenic 40.0%
!! CTTTTGGAGAAAACAGTGGT+GGG + chr2.1:64810249-64810268 MS.gene28281:CDS 40.0%
!! GACCTTTTGACAGTTGATGT+AGG - chr2.1:64810612-64810631 None:intergenic 40.0%
!! TGGTTAGGATTTTTGGACCA+TGG - chr2.1:64814234-64814253 None:intergenic 40.0%
!!! CTAAACCAGGAGTGTTTTGA+TGG - chr2.1:64810478-64810497 None:intergenic 40.0%
!!! TCTTATGTGATGGGTGCTTT+TGG + chr2.1:64810233-64810252 MS.gene28281:CDS 40.0%
AAAGTCACGTTGAACCACCA+TGG + chr2.1:64815246-64815265 MS.gene28281:intron 45.0%
AAGAGGAAGAAGAGCTTCCA+TGG - chr2.1:64810529-64810548 None:intergenic 45.0%
AATTCCCTGTCTTCTGCTTG+AGG - chr2.1:64814795-64814814 None:intergenic 45.0%
AATTTGGAGGACTTCGGAAC+AGG + chr2.1:64811987-64812006 MS.gene28281:intron 45.0%
ACAAACTGCATGTCCTCTGA+AGG - chr2.1:64815854-64815873 None:intergenic 45.0%
ACCGTTGGATCAAGATCGAA+AGG - chr2.1:64815539-64815558 None:intergenic 45.0%
ACCTCGCAATTACCACTTCT+GGG - chr2.1:64812081-64812100 None:intergenic 45.0%
ACTAGGGTCTCTTGTGTGTA+TGG + chr2.1:64813522-64813541 MS.gene28281:intron 45.0%
AGATCCTCAAGCAGAAGACA+GGG + chr2.1:64814788-64814807 MS.gene28281:CDS 45.0%
AGCTTGCCCTTGGTTGTATA+TGG - chr2.1:64814034-64814053 None:intergenic 45.0%
AGGTGCATAGGATAAAGAGC+CGG - chr2.1:64813716-64813735 None:intergenic 45.0%
AGTGAAGGTGGAGATAGGAA+TGG + chr2.1:64814723-64814742 MS.gene28281:CDS 45.0%
ATGTGCAACTGCAGTGAGAA+TGG + chr2.1:64810945-64810964 MS.gene28281:CDS 45.0%
CATAACCGTACACTGCCTTT+AGG + chr2.1:64811450-64811469 MS.gene28281:intron 45.0%
CCAAGGGCAAGCTAATTACA+AGG + chr2.1:64814041-64814060 MS.gene28281:intron 45.0%
CGGATTGAAGAGTAGGTCTT+GGG + chr2.1:64814577-64814596 MS.gene28281:intron 45.0%
CGTGACTTGAAAAACCATGG+TGG - chr2.1:64815263-64815282 None:intergenic 45.0%
CGTGTAAACACTACTCCCTA+TGG + chr2.1:64812377-64812396 MS.gene28281:intron 45.0%
CTTCCAAACACAGACATGCA+TGG - chr2.1:64811285-64811304 None:intergenic 45.0%
CTTGTAGTGAAGGTGGAGAT+AGG + chr2.1:64814718-64814737 MS.gene28281:CDS 45.0%
GAAAGCTTCCAAAAGAGGCA+AGG + chr2.1:64814892-64814911 MS.gene28281:CDS 45.0%
GATGCTAACAAGTGCCCTAA+AGG - chr2.1:64811468-64811487 None:intergenic 45.0%
GCATGGAGCCTTGGAAATAA+TGG + chr2.1:64813669-64813688 MS.gene28281:intron 45.0%
GGCAACAATTGCTTGAATGG+TGG + chr2.1:64814913-64814932 MS.gene28281:CDS 45.0%
GTGTAGATAATGTGCCTTCC+CGG + chr2.1:64813694-64813713 MS.gene28281:intron 45.0%
TACCTCGCAATTACCACTTC+TGG - chr2.1:64812082-64812101 None:intergenic 45.0%
TAGATCCTCAAGCAGAAGAC+AGG + chr2.1:64814787-64814806 MS.gene28281:CDS 45.0%
TAGTGGAATTAGGGATGGGA+AGG - chr2.1:64810391-64810410 None:intergenic 45.0%
TCAATCAAAGGAAACGGCAC+TGG + chr2.1:64815825-64815844 MS.gene28281:CDS 45.0%
TCGGATTGAAGAGTAGGTCT+TGG + chr2.1:64814576-64814595 MS.gene28281:intron 45.0%
TCTGCATCTAGGCTTGACTA+GGG + chr2.1:64813506-64813525 MS.gene28281:intron 45.0%
TGATCAGCTTGTAGTGAAGG+TGG + chr2.1:64814711-64814730 MS.gene28281:intron 45.0%
TGATCCAATGACCTTTGGTG+TGG - chr2.1:64815442-64815461 None:intergenic 45.0%
TGATGTAGGCTTCCAAGAGA+CGG - chr2.1:64810598-64810617 None:intergenic 45.0%
TGTGCAACTGCAGTGAGAAT+GGG + chr2.1:64810946-64810965 MS.gene28281:CDS 45.0%
TTCAGAGGACATGCAGTTTG+TGG + chr2.1:64815853-64815872 MS.gene28281:CDS 45.0%
TTCGGAACAGGAAGATTGGT+GGG + chr2.1:64811999-64812018 MS.gene28281:intron 45.0%
TTCTGCATCTAGGCTTGACT+AGG + chr2.1:64813505-64813524 MS.gene28281:intron 45.0%
! GCAGTTGGATCAGGTTGTTT+AGG + chr2.1:64810976-64810995 MS.gene28281:CDS 45.0%
! TCCATGAACTGATCTAGAGC+TGG - chr2.1:64811009-64811028 None:intergenic 45.0%
! TTTGTATATATGGGGGCGCA+AGG - chr2.1:64814208-64814227 None:intergenic 45.0%
!! CATTGGTGTTGGTGCATTGA+AGG + chr2.1:64811734-64811753 MS.gene28281:intron 45.0%
!! CCTTGTAATTAGCTTGCCCT+TGG - chr2.1:64814044-64814063 None:intergenic 45.0%
!! GCTTTTGGAGAAAACAGTGG+TGG + chr2.1:64810248-64810267 MS.gene28281:CDS 45.0%
!! GGTGCTTTTGGAGAAAACAG+TGG + chr2.1:64810245-64810264 MS.gene28281:CDS 45.0%
!! GTTTCGACTTGGTGCATGTT+TGG + chr2.1:64815108-64815127 MS.gene28281:intron 45.0%
!! TCCAGCTCTAGATCAGTTCA+TGG + chr2.1:64811005-64811024 MS.gene28281:CDS 45.0%
!! TTGATTATTAATTAATTAAA+GGG + chr2.1:64811337-64811356 MS.gene28281:intron 5.0%
!! TTTGATTATTAATTAATTAA+AGG + chr2.1:64811336-64811355 MS.gene28281:intron 5.0%
AACCTTGCCACCACTTCACT+TGG - chr2.1:64810916-64810935 None:intergenic 50.0%
AGAATGGGTGGAGATGCAGT+TGG + chr2.1:64810961-64810980 MS.gene28281:CDS 50.0%
AGTGCCCTAAAGGCAGTGTA+CGG - chr2.1:64811458-64811477 None:intergenic 50.0%
CACACCACACCAAAGGTCAT+TGG + chr2.1:64815435-64815454 MS.gene28281:intron 50.0%
CATAGGATAAAGAGCCGGGA+AGG - chr2.1:64813711-64813730 None:intergenic 50.0%
CTTCGGAACAGGAAGATTGG+TGG + chr2.1:64811998-64812017 MS.gene28281:intron 50.0%
GGACATGCAGTTTGTGGTGA+TGG + chr2.1:64815859-64815878 MS.gene28281:CDS 50.0%
GGACTTCGGAACAGGAAGAT+TGG + chr2.1:64811995-64812014 MS.gene28281:intron 50.0%
GGTGCATAGGATAAAGAGCC+GGG - chr2.1:64813715-64813734 None:intergenic 50.0%
GGTGGAGCAGACATTACAAG+TGG + chr2.1:64814931-64814950 MS.gene28281:CDS 50.0%
GGTTTAGATGCATGGAGCCT+TGG + chr2.1:64813660-64813679 MS.gene28281:intron 50.0%
GTGAGGATGAGCCATGATCT+TGG - chr2.1:64810570-64810589 None:intergenic 50.0%
GTGGTGCTTACAGATGGGTA+AGG - chr2.1:64814957-64814976 None:intergenic 50.0%
TCCCAGAAGTGGTAATTGCG+AGG + chr2.1:64812077-64812096 MS.gene28281:intron 50.0%
TCCTCACTATCACCGTCTCT+TGG + chr2.1:64810583-64810602 MS.gene28281:CDS 50.0%
TCTGCACTTGTTCCCAGAAG+TGG + chr2.1:64812066-64812085 MS.gene28281:intron 50.0%
! TCCAAGAGACGGTGATAGTG+AGG - chr2.1:64810587-64810606 None:intergenic 50.0%
! TTTGGTGTGGTGTGACTGCA+CGG - chr2.1:64815429-64815448 None:intergenic 50.0%
!! GCATGAGTTAAGGGCACCTT+TGG - chr2.1:64811660-64811679 None:intergenic 50.0%
CACCAAGTGAAGTGGTGGCA+AGG + chr2.1:64810911-64810930 MS.gene28281:CDS 55.0%
GCAACTGCAGTGAGAATGGG+TGG + chr2.1:64810949-64810968 MS.gene28281:CDS 55.0%
GGTGGAGATGCAGTTGGATC+AGG + chr2.1:64810967-64810986 MS.gene28281:CDS 55.0%
GTGCAGTCACACCACACCAA+AGG + chr2.1:64815428-64815447 MS.gene28281:intron 55.0%
TCCACTATGCACTTGTCCCC+AGG - chr2.1:64812181-64812200 None:intergenic 55.0%
TCCTGGGGACAAGTGCATAG+TGG + chr2.1:64812177-64812196 MS.gene28281:intron 55.0%
! GGTTGGAGCACCAAGTGAAG+TGG + chr2.1:64810903-64810922 MS.gene28281:intron 55.0%
! TGGAGCACCAAGTGAAGTGG+TGG + chr2.1:64810906-64810925 MS.gene28281:CDS 55.0%
!! CTGGCTCTAGCAGAGTCAAC+AGG + chr2.1:64815770-64815789 MS.gene28281:CDS 55.0%
! ACGGCACTGGAAGCCTTCAG+AGG + chr2.1:64815838-64815857 MS.gene28281:CDS 60.0%
! GGGGGCGCAAGGAAAAGAGA+GGG - chr2.1:64814197-64814216 None:intergenic 60.0%
! TGGGGGCGCAAGGAAAAGAG+AGG - chr2.1:64814198-64814217 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 64810200 64815961 64810200 ID=MS.gene28281
chr2.1 mRNA 64810200 64815961 64810200 ID=MS.gene28281.t1;Parent=MS.gene28281
chr2.1 exon 64810200 64810628 64810200 ID=MS.gene28281.t1.exon1;Parent=MS.gene28281.t1
chr2.1 CDS 64810200 64810628 64810200 ID=cds.MS.gene28281.t1;Parent=MS.gene28281.t1
chr2.1 exon 64810904 64811159 64810904 ID=MS.gene28281.t1.exon2;Parent=MS.gene28281.t1
chr2.1 CDS 64810904 64811159 64810904 ID=cds.MS.gene28281.t1;Parent=MS.gene28281.t1
chr2.1 exon 64814718 64814965 64814718 ID=MS.gene28281.t1.exon3;Parent=MS.gene28281.t1
chr2.1 CDS 64814718 64814965 64814718 ID=cds.MS.gene28281.t1;Parent=MS.gene28281.t1
chr2.1 exon 64815758 64815961 64815758 ID=MS.gene28281.t1.exon4;Parent=MS.gene28281.t1
chr2.1 CDS 64815758 64815961 64815758 ID=cds.MS.gene28281.t1;Parent=MS.gene28281.t1
Gene Sequence

>MS.gene28281

ATGGAGGGTAGTTCTAATGGAAGTTCTTCTTATTCTTATGTGATGGGTGCTTTTGGAGAAAACAGTGGTGGGCTATGTCCTCCAATGATGATGATGCCTTTAGTCACTTCATCTCATCATAATGCTCATCATCCAATAAATTCCAATAACCACAACAATATTAATGCAAACAACATAAGCGGTCTTTTCCTTCCCATCCCTAATTCCACTAACAATAATAACAATCACTACACCAACTGTAATAACAACACCTCTTCTATCATGCTTCAAAATAACCATCAAAACACTCCTGGTTTAGGTTACTATTTCATGGACAACATCAACAACCATGGAAGCTCTTCTTCCTCTTCTTCTTCTTCTGTCAAATCCAAGATCATGGCTCATCCTCACTATCACCGTCTCTTGGAAGCCTACATCAACTGTCAAAAGGTCAGAAAAAAAAAAAGATAATTATTTTGAAAACGATGTGTGTAATTAATTTCTTTGTACTTTTTTTGTTTGACAAGTTTGGATCTGACGAGCTGTGTTGTATAATTGTACTTTGAAACTGTGGGCTTTTGTTTTCATTTCCATTTATTACTAATATTGACAAACTATCATGTATATTATTGTAAGTCAAAACCCTTTTAAGCATAGATGATAAAGACACTTCATTTCATGACTATTTTTTTCATAAATTTTTTACTTCATGGATATTATTTTAGGTTGGAGCACCAAGTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCAACTGCAGTGAGAATGGGTGGAGATGCAGTTGGATCAGGTTGTTTAGGTGAAGATCCAGCTCTAGATCAGTTCATGGAAGCTTACTGTGAGATGCTTATCAAGTATGAGCAAGAACTTTCCAAACCCTTAAAGGAAGCTATGCTTTTTCTTCAAAGGATTGAAGTCCAGTTCAAAAATCTTACAGTTTCTTCTTCTTCAGATAATATTGGTGATAATAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAGAAAATACTATTCAGATTTTAAATCATAATCTTGATTGCTTGCTTGATATTTGTTGCTGTTTACATATGTATCCATGCATGTCTGTGTTTGGAAGAGTTTGTTAATTTTGTTAGTATGTAAAAGTGTTTGATTATTAATTAATTAAAGGGTCTTGTTAACAAGTGCCCTAAGGACATTGTTTAAGGAACCCAAAAAAAGAAACAATGTCTTGAAAATACAAGTCAAACATTTTTTAGAGTCATAACCGTACACTGCCTTTAGGGCACTTGTTAGCATCTTCCTTAATTAAATTAAATTGAAGTTAATGACAAGATCTACTTTTTCTTTGCAGCTTTTCATAAAAAAATTCTTAATTAGTCTTTCTCATTGATTTTTCATTTTATATTTCTAGCTTGTACTCTTTTTAATCTTCTTTGCCTAAATAAGTGAGTTCCAAATACTTGAAACCAAAGGTGCCCTTAACTCATGCATTTTTGTCTGAAAATAAAGGTAGATGGTGATGTTTAGTAGTACATATATATTTCATTGGTGTTGGTGCATTGAAGGAACTTAACTATATAGGTATCTTGTTAAATTCGTCGTTTCTTGTGTGTGTGTGTGTGCGCGCTTGATAGTATTGTTTTTATGGGAACTATAAGACTTACATCATCACATATATAGCTTTTTCTTAAAATTTCCCTTTTGATGAGGTCACAGAAACTCTCAGATTTCACTGGCTTTTGTAGTGTTCTTAATATATTAACATTATTAAAGAATCTACTTTGTAATGAATCCAAAATTTGGAGGACTTCGGAACAGGAAGATTGGTGGGTGAATTTAGGTTTTGTAAATAATAACCAATGAATTAGGGTTTCTTCTGCACTTGTTCCCAGAAGTGGTAATTGCGAGGTATATACTCACAAGTTTCTTTCTAAATTGGAATGCAAAATGCAGATAGTAGAGTAGCTCCAAAGAGGTAAAGTACTTTCCTGGGGACAAGTGCATAGTGGATTTTAGATTATGATATGGATCAATTAACATGAAAAAATCTTGCAAAGTTGATTGGATTTGATTAATGACCTAAAAAAGAGATTAAGCTATGATGTGTTAGTAGGTCCTTAAGAATAATGGTGAGTTTAATTGATTTGTTCTCTTGCTTCTTTTTCTCATTTGTCTCATCAAGGTTCCGTGTAAACACTACTCCCTATGGATGGAATATTTTATTAATTTGTATAATTTCATATAGATAGTGTGATTATATGTGTTGTCATCATTATGTATATTTTTGTGTCTGCAGGTATAGATGCATATTATAATGCTTGTAAAATTATGTTTGTGTGTTGATATTATTATATATATTTGATAAAAAACTTGTTTGCTTGTCTTTAACTAAAAATGGATATACATTGTCCTACATGCATTTTTCTATGATGTTCATTGTTGGTGCTTATCAAAAAACTGTGGCATCTATGTTGAATGAAGACTACAATTGAATTTGAGTCAAACTTTGCTGCTATAGAGTTAATGACTATGATGAAAATAAGCAGAACCTTATCACATAATGCATTGGATATAAACATGACCAAGCTTTTAGTGGATCATTGATTTCTAGCTTCCAACTATGTATGGGCCAAAAGAAGTATATAGTAGTAACTTTCCACATATTGATCCAAAGTTTTCAATTCAATGTTTCTTATCTTTATGTTCATGTTCCCCTCTATTTTTGTAGTATATCATCGTATGCTGGTTTTTCAATTATTGAAGTCTCCTTGTAGTAATGTACTGTCTTACCCTTCAAAACATAAAAAAACTTGAACTTCCACTTATCAATTATACATGTTTTTGTTTATGCTTTTGATGTGTTAATTTTGTTAAACTCTCCTATATAGAAAGATTATCTTAGGTTTTGGTTCTAACTAACTCCAAGTTTGTAAGGTTTTCGGGTGTCCATTTTATAAAGAAAATCGATCGATCTTCGACTTGAGTTTTTTCCATTTAGTTAAGCTATGCATTTTTCTTCGGCTTTGGCATGTGAAAACCTTCTCATTAAGATTACACTGTGTTAATTCTAATAATTAATAACAATGGCCTTTGATTATGTTTGAAGTAATATAATATATTGTACTCCCTCCGGTCCTTATTATAAGAAAAAGTTGACTTTTTAGGTTCATAGAATATTTAATGTATCTTATTGTAAATATAGACTAGATACATCACTTATACAATGAACCAAAAAAGTTAATTGTTTCTTATAATAAGGACCGGAGGGAGTACCATTTTTATCCCTATGATAATAGATTTCCACTGGTTTTGATTTCTGCATCTAGGCTTGACTAGGGTCTCTTGTGTGTATGGATTATGTTGCCCTTCATAAGTTAAGTATTTTGGTGAAGTATACATTCACGAGGAATAAACTTTATCATCTTTAACTTTGTCTTCTTTGAAGGAAAAGGAGTGTCCATTATTTCAGGGTTTAGATGCATGGAGCCTTGGAAATAATGGATGTGTAGATAATGTGCCTTCCCGGCTCTTTATCCTATGCACCTAGTTCAAATGTTAACCTTCAATGTGGTGAATCAATGATTTTCAATGATTGAAGATTGTACTTTTATCCTTTATTTAATTAAACATTCACCCTTGTGGTATCAAAATTTGTCCTAACCAATAATTTAGTAGCTTAGCTTGGCATTTAAATCCAACATATATGCTAGTTTCAGCTAGTTGAAATAGTATCATGGTTTAAAAAGTTAAGCTACTATGTTTGTTAACCTTATTGGTTTACTTTTATGTAAACAGCAAAGAAGAGTTCCAATTAAAAATAGGAGTACAAGGGGTACTCATCCATATACAACCAAGGGCAAGCTAATTACAAGGGGTACCCCCCACATATATTTGATTATAGGACCTAAGGATGCAATTCATATGACCTAAACACCACTCAAAGAAAAGGCTATTGCCTCCATGAAATACCTTCCAAGTAACTGAATGCCAAATTAGTGACAATCCCTCTCTTTTCCTTGCGCCCCCATATATACAAATATCCATGGTCCAAAAATCCTAACCATTTTGATTTCACTCCACATTGTTAATATTTTAACCTTTTTTTTAAATATATATATTTTCTTCCAATGTTAGATTTCTATATTTATTTTAATGTTCTGTTTACGAGGATTGGTTTTGCCAACTTGCCTTCTATTCATGTGTAAGTAATATTGATAGTAAATAAGAAGTCAAACAATAAAAAAAATTGTTACTGTTGTTTTAAAAAAAAAATGATGACTATAAATTGTTTTTACCGGTAGCAATTATTGTTGTTGGGTAAAAGCTCAAGTGTCACATTGCTTAGAAATGTCATAACATAGAACTTGGAATCAACTTTTTGCAAATCGGATTGAAGAGTAGGTCTTGGGATATACACAATACTATGTATTTTGAATACAACCTTTTATTTTCATATATTCAAAATATCCTTCTAATGTTATATTATTTGCAATCATCATAATTGATTTGATTCATATATATGATCAGCTTGTAGTGAAGGTGGAGATAGGAATGGATCATCTGAAGAAGATCATGTTGATATGTACAACAACATGATAGATCCTCAAGCAGAAGACAGGGAATTAAAGGGTCAGCTTTTGAGAAAATACAGTGGATACTTAGGCAGTCTGAAGCAAGAGTTTATGAAGAAAAGGAAAAAAGGAAAGCTTCCAAAAGAGGCAAGGCAACAATTGCTTGAATGGTGGAGCAGACATTACAAGTGGCCTTACCCATCTGTAAGCACCACTTTAAAAATTTGAATCCTTTTTCTTAATCTCTTGCCACAATATTTCTAATTAAATTTTGATTTCTTTCATTTCATAGGCAATCACCTAGTTACGGATTTTAATAAATTAATCAAAGATAATGACAACTCATGTTTCGACTTGGTGCATGTTTGGATTCACGAGTGATTTGCTAAAATTGTGTGGAGACCGTGATTTTTTTGTAGCTCCAATGTGTAGCTTTTGCAATAAGTCATGATCAACCAAGTCCACCATGATTTTTCAAATTTGCAAAGTCACGTTGAACCACCATGGTTTTTCAAGTCACGCTAAGCCGAACATGCATTTAGTATTTGAAGACTGATTTTTTAAGGTCAAAATGTGAGTTGTTTGCATTAATTTGAAGGTTTCGCATGACTATATTCTATATCAAATGTGTAAATTGGATTTGGGTTGTTGAGCAGTCACAATACCGTGCAGTCACACCACACCAAAGGTCATTGGATCAAAATCAGACGATTGGATTTAAAGTTTAGTGTGTTAGATTTTTTTTTTTAGTCAAAATCTGCATTGATATTTGGACCTTTCGATCTTGATCCAACGGTCAATAATGTGGTCAACTGTGTGACTTGACGATTTTGTGATTTCACACGCAATCCAAAACCCTAACCATATAAACATGTATTGTACAATTTACTTTTTTTGAAGGTAAGAATTTTACTTTATAATAACTAGCATGAAGACAAATTGATAATAAGTTGTCTCACACAATTCAAATGTACTACTATAATTTATGAATAACAGGAATCACAGAAGCTGGCTCTAGCAGAGTCAACAGGTCTTGATCAGAAGCAAATAAACAACTGGTTTATCAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGATGGATCCAAGTCATCCACACTATTACATGGATAATGTTCTCAGCAATTCATATCCCATGGATCTATCTAACACCATGCTCTAG
Protein sequence

>MS.gene28281.t1

MEGSSNGSSSYSYVMGAFGENSGGLCPPMMMMPLVTSSHHNAHHPINSNNHNNINANNISGLFLPIPNSTNNNNNHYTNCNNNTSSIMLQNNHQNTPGLGYYFMDNINNHGSSSSSSSSSVKSKIMAHPHYHRLLEAYINCQKVGAPSEVVARLEEACATAVRMGGDAVGSGCLGEDPALDQFMEAYCEMLIKYEQELSKPLKEAMLFLQRIEVQFKNLTVSSSSDNIACSEGGDRNGSSEEDHVDMYNNMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYMDNVLSNSYPMDLSNTML