Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30247.t1 | XP_003630965.1 | 100 | 616 | 0 | 0 | 1 | 616 | 1 | 616 | 0.00E+00 | 1183.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30247.t1 | Q8LF21 | 86.7 | 617 | 78 | 2 | 1 | 616 | 1 | 614 | 2.3e-310 | 1065.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30247.t1 | G7LBF4 | 100.0 | 616 | 0 | 0 | 1 | 616 | 1 | 616 | 0.0e+00 | 1183.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049251 | MS.gene30247 | 0.833018 | 6.79E-56 | -1.69E-46 |
| MS.gene049261 | MS.gene30247 | 0.809951 | 1.47E-50 | -1.69E-46 |
| MS.gene049596 | MS.gene30247 | 0.801632 | 8.21E-49 | -1.69E-46 |
| MS.gene050297 | MS.gene30247 | 0.810617 | 1.05E-50 | -1.69E-46 |
| MS.gene050338 | MS.gene30247 | 0.812683 | 3.75E-51 | -1.69E-46 |
| MS.gene050818 | MS.gene30247 | 0.841036 | 6.06E-58 | -1.69E-46 |
| MS.gene050894 | MS.gene30247 | 0.852291 | 5.08E-61 | -1.69E-46 |
| MS.gene052143 | MS.gene30247 | 0.817511 | 3.18E-52 | -1.69E-46 |
| MS.gene052367 | MS.gene30247 | 0.814986 | 1.17E-51 | -1.69E-46 |
| MS.gene052494 | MS.gene30247 | 0.828702 | 7.76E-55 | -1.69E-46 |
| MS.gene053173 | MS.gene30247 | 0.810088 | 1.37E-50 | -1.69E-46 |
| MS.gene054585 | MS.gene30247 | 0.826718 | 2.33E-54 | -1.69E-46 |
| MS.gene055251 | MS.gene30247 | 0.844404 | 7.72E-59 | -1.69E-46 |
| MS.gene055729 | MS.gene30247 | 0.814621 | 1.40E-51 | -1.69E-46 |
| MS.gene055730 | MS.gene30247 | 0.817321 | 3.50E-52 | -1.69E-46 |
| MS.gene055731 | MS.gene30247 | 0.80967 | 1.69E-50 | -1.69E-46 |
| MS.gene056266 | MS.gene30247 | -0.840762 | 7.15E-58 | -1.69E-46 |
| MS.gene056526 | MS.gene30247 | 0.822342 | 2.49E-53 | -1.69E-46 |
| MS.gene056700 | MS.gene30247 | 0.801069 | 1.07E-48 | -1.69E-46 |
| MS.gene05732 | MS.gene30247 | 0.813676 | 2.27E-51 | -1.69E-46 |
| MS.gene058550 | MS.gene30247 | 0.857112 | 2.04E-62 | -1.69E-46 |
| MS.gene059304 | MS.gene30247 | 0.825789 | 3.87E-54 | -1.69E-46 |
| MS.gene060076 | MS.gene30247 | 0.836083 | 1.15E-56 | -1.69E-46 |
| MS.gene060077 | MS.gene30247 | 0.81772 | 2.85E-52 | -1.69E-46 |
| MS.gene061044 | MS.gene30247 | 0.839636 | 1.41E-57 | -1.69E-46 |
| MS.gene061260 | MS.gene30247 | 0.833766 | 4.42E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene30247 | MS.gene064542 | PPI |
| MS.gene035805 | MS.gene30247 | PPI |
| MS.gene30247 | MS.gene73119 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30247.t1 | MTR_8g105580 | 100.000 | 616 | 0 | 0 | 1 | 616 | 1 | 616 | 0.0 | 1273 |
| MS.gene30247.t1 | MTR_8g105580 | 100.000 | 575 | 0 | 0 | 1 | 575 | 1 | 575 | 0.0 | 1189 |
| MS.gene30247.t1 | MTR_1g032550 | 88.006 | 617 | 71 | 2 | 1 | 616 | 1 | 615 | 0.0 | 1123 |
| MS.gene30247.t1 | MTR_8g009510 | 76.220 | 635 | 131 | 5 | 1 | 615 | 1 | 635 | 0.0 | 983 |
| MS.gene30247.t1 | MTR_7g451010 | 78.135 | 622 | 122 | 5 | 1 | 615 | 1 | 615 | 0.0 | 979 |
| MS.gene30247.t1 | MTR_4g098920 | 71.707 | 615 | 161 | 4 | 4 | 615 | 1 | 605 | 0.0 | 932 |
| MS.gene30247.t1 | MTR_8g099550 | 66.505 | 618 | 191 | 4 | 4 | 615 | 1 | 608 | 0.0 | 890 |
| MS.gene30247.t1 | MTR_5g009150 | 66.074 | 619 | 193 | 4 | 4 | 615 | 1 | 609 | 0.0 | 884 |
| MS.gene30247.t1 | MTR_8g027675 | 66.450 | 614 | 197 | 3 | 4 | 615 | 1 | 607 | 0.0 | 871 |
| MS.gene30247.t1 | MTR_8g009510 | 76.281 | 527 | 111 | 3 | 103 | 615 | 2 | 528 | 0.0 | 822 |
| MS.gene30247.t1 | MTR_2g009690 | 38.337 | 493 | 284 | 6 | 5 | 487 | 22 | 504 | 2.92e-97 | 316 |
| MS.gene30247.t1 | MTR_4g093750 | 38.134 | 493 | 285 | 6 | 5 | 487 | 13 | 495 | 2.93e-94 | 305 |
| MS.gene30247.t1 | MTR_4g093750 | 38.057 | 494 | 286 | 6 | 5 | 487 | 13 | 497 | 3.05e-93 | 303 |
| MS.gene30247.t1 | MTR_4g030140 | 31.262 | 515 | 320 | 9 | 1 | 495 | 1 | 501 | 1.38e-66 | 234 |
| MS.gene30247.t1 | MTR_4g134680 | 29.746 | 511 | 330 | 9 | 1 | 495 | 1 | 498 | 5.00e-65 | 228 |
| MS.gene30247.t1 | MTR_4g134680 | 29.746 | 511 | 330 | 9 | 1 | 495 | 1 | 498 | 2.72e-64 | 227 |
| MS.gene30247.t1 | MTR_4g134680 | 29.746 | 511 | 330 | 9 | 1 | 495 | 1 | 498 | 8.86e-64 | 226 |
| MS.gene30247.t1 | MTR_4g134680 | 36.869 | 198 | 125 | 0 | 295 | 492 | 1 | 198 | 1.52e-37 | 148 |
| MS.gene30247.t1 | MTR_8g087770 | 35.816 | 282 | 162 | 6 | 35 | 310 | 68 | 336 | 1.02e-33 | 137 |
| MS.gene30247.t1 | MTR_8g087750 | 35.714 | 294 | 166 | 8 | 35 | 320 | 71 | 349 | 1.57e-33 | 136 |
| MS.gene30247.t1 | MTR_8g463270 | 25.698 | 358 | 222 | 9 | 12 | 341 | 31 | 372 | 1.30e-17 | 87.4 |
| MS.gene30247.t1 | MTR_4g022340 | 26.552 | 290 | 158 | 9 | 38 | 302 | 32 | 291 | 1.52e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30247.t1 | AT1G14830 | 87.702 | 618 | 70 | 3 | 1 | 616 | 1 | 614 | 0.0 | 1130 |
| MS.gene30247.t1 | AT3G60190 | 77.244 | 624 | 131 | 4 | 1 | 615 | 1 | 622 | 0.0 | 1015 |
| MS.gene30247.t1 | AT2G44590 | 74.351 | 616 | 148 | 3 | 4 | 615 | 1 | 610 | 0.0 | 966 |
| MS.gene30247.t1 | AT2G44590 | 71.591 | 616 | 148 | 4 | 4 | 615 | 1 | 593 | 0.0 | 922 |
| MS.gene30247.t1 | AT2G44590 | 71.475 | 617 | 148 | 5 | 4 | 615 | 1 | 594 | 0.0 | 919 |
| MS.gene30247.t1 | AT3G61760 | 66.829 | 615 | 194 | 5 | 4 | 615 | 1 | 608 | 0.0 | 881 |
| MS.gene30247.t1 | AT5G42080 | 66.829 | 615 | 194 | 4 | 4 | 615 | 1 | 608 | 0.0 | 879 |
| MS.gene30247.t1 | AT5G42080 | 66.829 | 615 | 194 | 4 | 4 | 615 | 1 | 608 | 0.0 | 879 |
| MS.gene30247.t1 | AT5G42080 | 66.179 | 615 | 192 | 5 | 4 | 615 | 1 | 602 | 0.0 | 864 |
| MS.gene30247.t1 | AT3G61760 | 67.652 | 575 | 176 | 5 | 4 | 575 | 1 | 568 | 0.0 | 830 |
| MS.gene30247.t1 | AT3G61760 | 72.297 | 444 | 120 | 3 | 4 | 444 | 1 | 444 | 0.0 | 695 |
| MS.gene30247.t1 | AT5G42080 | 73.660 | 429 | 110 | 2 | 4 | 429 | 1 | 429 | 0.0 | 681 |
| MS.gene30247.t1 | AT2G14120 | 38.477 | 499 | 281 | 8 | 5 | 487 | 19 | 507 | 1.97e-97 | 314 |
| MS.gene30247.t1 | AT2G14120 | 38.477 | 499 | 281 | 8 | 5 | 487 | 19 | 507 | 9.73e-97 | 313 |
| MS.gene30247.t1 | AT2G14120 | 38.477 | 499 | 281 | 8 | 5 | 487 | 19 | 507 | 9.83e-97 | 313 |
| MS.gene30247.t1 | AT4G33650 | 38.229 | 497 | 284 | 8 | 5 | 487 | 35 | 522 | 4.50e-93 | 304 |
| MS.gene30247.t1 | AT4G33650 | 38.229 | 497 | 284 | 8 | 5 | 487 | 35 | 522 | 4.74e-93 | 304 |
| MS.gene30247.t1 | AT2G14120 | 36.742 | 528 | 279 | 9 | 5 | 487 | 19 | 536 | 7.89e-93 | 303 |
| MS.gene30247.t1 | AT1G10290 | 30.934 | 514 | 320 | 10 | 1 | 495 | 1 | 498 | 6.29e-66 | 232 |
| MS.gene30247.t1 | AT1G59610 | 32.558 | 473 | 289 | 10 | 38 | 495 | 41 | 498 | 1.84e-64 | 228 |
| MS.gene30247.t1 | AT1G60500 | 24.355 | 620 | 410 | 15 | 35 | 614 | 65 | 665 | 1.98e-40 | 157 |
| MS.gene30247.t1 | AT1G60530 | 42.703 | 185 | 105 | 1 | 35 | 219 | 62 | 245 | 4.99e-39 | 145 |
| MS.gene30247.t1 | AT1G53140 | 26.741 | 359 | 209 | 11 | 12 | 334 | 47 | 387 | 1.21e-18 | 90.9 |
Find 156 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGACATTTGGCGCATAAAA+TGG | 0.173187 | 4.2:-1358211 | MS.gene30247:CDS |
| CGACTCTGTGGCTTGGAAAT+AGG | 0.183632 | 4.2:-1354494 | None:intergenic |
| ATCAATTGTCTTGTTTATTA+AGG | 0.199022 | 4.2:+1357982 | None:intergenic |
| GGAGCATTCCGGTTTGAATT+TGG | 0.210028 | 4.2:+1356118 | None:intergenic |
| TGATACACAGAAGGAGAAAT+TGG | 0.249728 | 4.2:-1354608 | MS.gene30247:intron |
| GTGGCGAAGGTTTATCTCTT+TGG | 0.255931 | 4.2:-1362511 | MS.gene30247:CDS |
| GGTTACAAAACTTGATCTTA+TGG | 0.260054 | 4.2:-1358522 | MS.gene30247:CDS |
| TGCGCCAAATGTCCATATTC+TGG | 0.263377 | 4.2:+1358219 | None:intergenic |
| CAACTTCATAAGACCGAAAA+TGG | 0.274604 | 4.2:-1361678 | MS.gene30247:CDS |
| TGCACGACACATTTCTAAAA+TGG | 0.282163 | 4.2:+1357793 | None:intergenic |
| GATGAAACAGATCGAATAAC+TGG | 0.291503 | 4.2:-1361148 | MS.gene30247:CDS |
| TTTGAATTTGGTGGTCCATT+TGG | 0.308876 | 4.2:+1356130 | None:intergenic |
| GACTCTGTGGCTTGGAAATA+GGG | 0.314338 | 4.2:-1354493 | None:intergenic |
| TGACAATGGACTACGGCTTT+TGG | 0.316072 | 4.2:+1355308 | None:intergenic |
| TTTGAGACAAGTCCAGAATA+TGG | 0.316914 | 4.2:-1358231 | MS.gene30247:CDS |
| AGGCCGATTGCAGTGGATTC+CGG | 0.317259 | 4.2:-1357929 | MS.gene30247:CDS |
| GGCCGATTGCAGTGGATTCC+GGG | 0.320029 | 4.2:-1357928 | MS.gene30247:CDS |
| TTGAATTTGGTGGTCCATTT+GGG | 0.329073 | 4.2:+1356131 | None:intergenic |
| TCAGTAAAATTATCATTGTT+GGG | 0.334634 | 4.2:+1356094 | None:intergenic |
| AGTTACGCGGCTGGTTGATA+TGG | 0.336032 | 4.2:-1356212 | MS.gene30247:CDS |
| ATCTAACAGCAGAATTCTTT+AGG | 0.338181 | 4.2:-1356180 | MS.gene30247:CDS |
| TTTCTAAAATGGTGTATAGT+TGG | 0.343193 | 4.2:+1357804 | None:intergenic |
| CAAGTTCCTTCAAAACAAAA+TGG | 0.346063 | 4.2:+1356712 | None:intergenic |
| GCATCCACGGAGGCTTCTGC+TGG | 0.348132 | 4.2:+1357398 | None:intergenic |
| GTCAGTAAAATTATCATTGT+TGG | 0.352098 | 4.2:+1356093 | None:intergenic |
| TTCTTGAAGGGCGGCAATAC+AGG | 0.352799 | 4.2:-1358350 | MS.gene30247:CDS |
| AAGTCGGTGAATCTCTTTCT+TGG | 0.356235 | 4.2:+1361627 | None:intergenic |
| AGCATTTGGAGCAAGTTATC+AGG | 0.360469 | 4.2:-1358027 | MS.gene30247:CDS |
| AAACTTGATCTTATGGATAA+AGG | 0.363059 | 4.2:-1358515 | MS.gene30247:CDS |
| ATTTCAGGTGAAAGAACATT+TGG | 0.368040 | 4.2:-1358548 | MS.gene30247:intron |
| TGGCGAAGGTTTATCTCTTT+GGG | 0.372210 | 4.2:-1362510 | MS.gene30247:CDS |
| TTCTAAAATGGTGTATAGTT+GGG | 0.382131 | 4.2:+1357805 | None:intergenic |
| CCTGGTGGGGACCGGATATA+CGG | 0.382856 | 4.2:-1357596 | MS.gene30247:CDS |
| GACTTTCTTCCTCGTGGATC+TGG | 0.386806 | 4.2:-1362410 | MS.gene30247:intron |
| GAATAAATGCTGAGTTGAAT+AGG | 0.388151 | 4.2:+1361100 | None:intergenic |
| GTAGTTTAGCAATGATCTCT+TGG | 0.401450 | 4.2:+1355274 | None:intergenic |
| GCAAAAGAAGTCGATCCTTC+AGG | 0.402730 | 4.2:-1358695 | MS.gene30247:intron |
| GAAGAAACTCAGCATATTCC+TGG | 0.407055 | 4.2:+1361655 | None:intergenic |
| GTCGTCGGTGGACAGAGTTC+AGG | 0.407717 | 4.2:-1362467 | MS.gene30247:CDS |
| TGTTCAAGATATTGAACAAA+TGG | 0.409474 | 4.2:-1360129 | MS.gene30247:CDS |
| TGTAAGTGCTTATATCAATA+TGG | 0.415690 | 4.2:-1355357 | MS.gene30247:CDS |
| TTTATTAAGGCAATGATACT+AGG | 0.426555 | 4.2:+1357995 | None:intergenic |
| GACAATCACCTCCGCAAGAT+TGG | 0.428586 | 4.2:-1356073 | MS.gene30247:intron |
| TCTTGCTAGGCTTCTATCTC+AGG | 0.429303 | 4.2:-1358178 | MS.gene30247:intron |
| GGATGAAGACCCATCCCTAA+TGG | 0.431010 | 4.2:-1354575 | MS.gene30247:CDS |
| CTCAGCATTTATTCTCCAAA+TGG | 0.434296 | 4.2:-1361091 | MS.gene30247:intron |
| CTTGTACAATTCAAGCCTCT+TGG | 0.436298 | 4.2:+1354534 | None:intergenic |
| TTAACCCTCATAGATCTTCC+TGG | 0.442577 | 4.2:-1360303 | MS.gene30247:CDS |
| TTCAGGAAAATCCTCTGTCT+TGG | 0.443738 | 4.2:-1362450 | MS.gene30247:CDS |
| GGACATTTGGCGCATAAAAT+GGG | 0.448357 | 4.2:-1358210 | MS.gene30247:CDS |
| TCATCTGATTGCTCCAGAGC+AGG | 0.454372 | 4.2:-1357465 | MS.gene30247:CDS |
| TCTGTCTTGGAAAGTGTTGT+TGG | 0.456396 | 4.2:-1362437 | MS.gene30247:CDS |
| ATCTTGATTGGCGGGAGAGA+TGG | 0.457501 | 4.2:+1358745 | None:intergenic |
| TTATGTTCAAGTTGGAAAGA+AGG | 0.468501 | 4.2:-1355249 | MS.gene30247:CDS |
| AAGTCCAGAATATGGACATT+TGG | 0.470149 | 4.2:-1358223 | MS.gene30247:CDS |
| ACCCCGGAATCCACTGCAAT+CGG | 0.472822 | 4.2:+1357926 | None:intergenic |
| TGAAGTGGCAATATCTTGAT+TGG | 0.475261 | 4.2:+1358733 | None:intergenic |
| CTGTCTTCTTGCTTTCGTCT+CGG | 0.478922 | 4.2:+1356233 | None:intergenic |
| TTAGGTGATCACGGTGGCGA+AGG | 0.483199 | 4.2:-1362524 | MS.gene30247:CDS |
| GCGAAAATGAAGGTTCTTGA+AGG | 0.491969 | 4.2:-1358363 | MS.gene30247:intron |
| CTTCCTTCCGTCGCCGTCGT+CGG | 0.492244 | 4.2:-1362482 | MS.gene30247:CDS |
| AAGGAAAGATGGCGATCAAA+GGG | 0.493239 | 4.2:+1357533 | None:intergenic |
| GCATTCCGGTTTGAATTTGG+TGG | 0.498132 | 4.2:+1356121 | None:intergenic |
| CAGAGTTAGACCGCATTGGC+AGG | 0.501137 | 4.2:-1357949 | MS.gene30247:CDS |
| AATACAGGCTGCAGCATCCA+TGG | 0.504183 | 4.2:-1358335 | MS.gene30247:CDS |
| GAACCAGAAAAGAACCCAAA+TGG | 0.505929 | 4.2:-1356145 | MS.gene30247:CDS |
| TCAGACGTCCTGGTGGGGAC+CGG | 0.509636 | 4.2:-1357604 | MS.gene30247:intron |
| CAGTAAAATTATCATTGTTG+GGG | 0.514716 | 4.2:+1356095 | None:intergenic |
| AGTCTTCTATAACCCTGCTC+TGG | 0.517134 | 4.2:+1357452 | None:intergenic |
| AACTTCTATTTCAGACGTCC+TGG | 0.519751 | 4.2:-1357614 | MS.gene30247:intron |
| CAAGAAGACAGTTACGCGGC+TGG | 0.521076 | 4.2:-1356221 | MS.gene30247:CDS |
| CCGTATATCCGGTCCCCACC+AGG | 0.521654 | 4.2:+1357596 | None:intergenic |
| TAAGGAAAGATGGCGATCAA+AGG | 0.525558 | 4.2:+1357532 | None:intergenic |
| CATCCACGGAGGCTTCTGCT+GGG | 0.526525 | 4.2:+1357399 | None:intergenic |
| GGAAGAGACTTTCTTCCTCG+TGG | 0.528185 | 4.2:-1362416 | MS.gene30247:CDS |
| ATGGACCACCAAATTCAAAC+CGG | 0.530820 | 4.2:-1356126 | MS.gene30247:CDS |
| GATACACAGAAGGAGAAATT+GGG | 0.530963 | 4.2:-1354607 | MS.gene30247:intron |
| AAAGTTGTCACTGAAGCTGA+TGG | 0.531731 | 4.2:-1357497 | MS.gene30247:CDS |
| GTGGCAATATCTTGATTGGC+GGG | 0.532340 | 4.2:+1358737 | None:intergenic |
| CATTGGCAGGCCGATTGCAG+TGG | 0.533531 | 4.2:-1357936 | MS.gene30247:CDS |
| CTGCAATCGGCCTGCCAATG+CGG | 0.540716 | 4.2:+1357939 | None:intergenic |
| AGAAAGAGATTCACCGACTT+CGG | 0.540723 | 4.2:-1361624 | MS.gene30247:intron |
| TCAGCCCAGGAAGATCTATG+AGG | 0.540894 | 4.2:+1360298 | None:intergenic |
| GCGACGATGACGAGCTTGAT+CGG | 0.541831 | 4.2:-1362581 | MS.gene30247:CDS |
| ACGATATCGACTCTGTGGCT+TGG | 0.542824 | 4.2:-1354501 | MS.gene30247:CDS |
| AGGCTGCAGCATCCATGGGT+TGG | 0.551004 | 4.2:-1358330 | MS.gene30247:CDS |
| TGGGATCAGAATATCTTGCT+AGG | 0.551156 | 4.2:-1358191 | MS.gene30247:CDS |
| GGAGAAATTGGGTGCCATGT+TGG | 0.551512 | 4.2:-1354596 | MS.gene30247:CDS |
| CCTTCCGTCGCCGTCGTCGG+TGG | 0.552612 | 4.2:-1362479 | MS.gene30247:CDS |
| GAAACTTCAGTTACCGAAGT+CGG | 0.553424 | 4.2:+1361611 | None:intergenic |
| TGTTCAAGTTGGAAAGAAGG+AGG | 0.554198 | 4.2:-1355246 | MS.gene30247:intron |
| ACCGCACTTACCCTCCATCC+AGG | 0.555227 | 4.2:+1357747 | None:intergenic |
| TCATAAGACCGAAAATGGCC+AGG | 0.558470 | 4.2:-1361673 | MS.gene30247:CDS |
| GCCACCGTGATCACCTAAAA+CGG | 0.560290 | 4.2:+1362529 | None:intergenic |
| GGTTATAGAAGACTCATTGA+AGG | 0.563512 | 4.2:-1357443 | MS.gene30247:CDS |
| TATTGTTACGCGGAGGCCGC+TGG | 0.566066 | 4.2:-1361706 | MS.gene30247:CDS |
| TTTAAAGAGCACCTGGATGG+AGG | 0.566959 | 4.2:-1357758 | MS.gene30247:CDS |
| TATTAATATCAGCTTGTGAA+CGG | 0.567091 | 4.2:+1358298 | None:intergenic |
| TAAAGTATTTAAAGAGCACC+TGG | 0.567215 | 4.2:-1357765 | MS.gene30247:CDS |
| CGAAAATGAAGGTTCTTGAA+GGG | 0.572722 | 4.2:-1358362 | MS.gene30247:intron |
| CATGATTGTTGCTCGAAGGA+AGG | 0.574494 | 4.2:-1358265 | MS.gene30247:CDS |
| TCTAACTTGACAATGGACTA+CGG | 0.575000 | 4.2:+1355301 | None:intergenic |
| CTAAAACGGTACAAGCTCGT+TGG | 0.575495 | 4.2:+1362543 | None:intergenic |
| GGTCCGTTCGTATGTTGAGA+AGG | 0.575952 | 4.2:-1360108 | MS.gene30247:intron |
| TAACCCTCATAGATCTTCCT+GGG | 0.576713 | 4.2:-1360302 | MS.gene30247:CDS |
| GCAATGTCATTTGAAAGCGT+TGG | 0.577613 | 4.2:+1356286 | None:intergenic |
| TGGCTTCTCTAACTTGACAA+TGG | 0.578361 | 4.2:+1355294 | None:intergenic |
| AATGCAGAGTTAGACCGCAT+TGG | 0.578744 | 4.2:-1357953 | MS.gene30247:CDS |
| CGGTTCACAATTCCAACCCA+TGG | 0.581424 | 4.2:+1358318 | None:intergenic |
| CCACCGACGACGGCGACGGA+AGG | 0.582483 | 4.2:+1362479 | None:intergenic |
| CCATGCAGCTGCTGTGAGGA+AGG | 0.584586 | 4.2:-1361179 | MS.gene30247:intron |
| ATCCAGTGCTTCATTTGCAG+CGG | 0.584720 | 4.2:+1356261 | None:intergenic |
| ATGGCTAAGATAATGCAGTT+CGG | 0.585285 | 4.2:+1358764 | None:intergenic |
| AGTGGCAATATCTTGATTGG+CGG | 0.585927 | 4.2:+1358736 | None:intergenic |
| CTATTTCAGACGTCCTGGTG+GGG | 0.587055 | 4.2:-1357609 | MS.gene30247:intron |
| CTGTCCACCGACGACGGCGA+CGG | 0.587559 | 4.2:+1362475 | None:intergenic |
| TTCTATTTCAGACGTCCTGG+TGG | 0.588961 | 4.2:-1357611 | MS.gene30247:intron |
| CATCTGATTGCTCCAGAGCA+GGG | 0.591556 | 4.2:-1357464 | MS.gene30247:CDS |
| AGATCTTCCTGGGCTGACAA+AGG | 0.592661 | 4.2:-1360292 | MS.gene30247:CDS |
| TTAAAGAGCACCTGGATGGA+GGG | 0.592992 | 4.2:-1357757 | MS.gene30247:intron |
| CAAGAAGATTACAGCATCCA+CGG | 0.593135 | 4.2:+1357385 | None:intergenic |
| AACCGCTGCAAATGAAGCAC+TGG | 0.596471 | 4.2:-1356263 | MS.gene30247:CDS |
| AGTAAAATTATCATTGTTGG+GGG | 0.597465 | 4.2:+1356096 | None:intergenic |
| GCCGATTGCAGTGGATTCCG+GGG | 0.599749 | 4.2:-1357927 | MS.gene30247:intron |
| ACTGCAACCTTTGTCAGCCC+AGG | 0.602242 | 4.2:+1360285 | None:intergenic |
| GTATTTAAAGAGCACCTGGA+TGG | 0.604835 | 4.2:-1357761 | MS.gene30247:CDS |
| TCTATTTCAGACGTCCTGGT+GGG | 0.606106 | 4.2:-1357610 | MS.gene30247:intron |
| GGGCTGACAAAGGTTGCAGT+AGG | 0.607376 | 4.2:-1360282 | MS.gene30247:intron |
| AACAACACTTTCCAAGACAG+AGG | 0.607579 | 4.2:+1362439 | None:intergenic |
| TGCTCTGGAGCAATCAGATG+AGG | 0.607841 | 4.2:+1357467 | None:intergenic |
| GTTATAGAAGACTCATTGAA+GGG | 0.609274 | 4.2:-1357442 | MS.gene30247:CDS |
| ATACAGGCTGCAGCATCCAT+GGG | 0.610950 | 4.2:-1358334 | MS.gene30247:CDS |
| GGGTCTATCAGCTATTTCAA+AGG | 0.611791 | 4.2:-1357422 | MS.gene30247:CDS |
| AAGTTGTCACTGAAGCTGAT+GGG | 0.616414 | 4.2:-1357496 | MS.gene30247:CDS |
| CAGCCCAGGAAGATCTATGA+GGG | 0.621732 | 4.2:+1360299 | None:intergenic |
| AAAATTACGTACCAATCTTG+CGG | 0.622307 | 4.2:+1356062 | None:intergenic |
| AGGTGAAAGAACATTTGGAG+TGG | 0.629893 | 4.2:-1358543 | MS.gene30247:CDS |
| TCGACATGATTGTTGCTCGA+AGG | 0.630142 | 4.2:-1358269 | MS.gene30247:CDS |
| AGGCCCAGCAGAAGCCTCCG+TGG | 0.632406 | 4.2:-1357402 | MS.gene30247:CDS |
| TTACCTTCTCAACATACGAA+CGG | 0.640976 | 4.2:+1360105 | None:intergenic |
| GGATGGGTCTTCATCCAACA+TGG | 0.649372 | 4.2:+1354582 | None:intergenic |
| AGAGAAATCAAATAGCCAAG+AGG | 0.661464 | 4.2:-1354549 | MS.gene30247:CDS |
| TTATGAAGTTGCAGTACCAG+CGG | 0.662429 | 4.2:+1361690 | None:intergenic |
| ATGAAACAGATCGAATAACT+GGG | 0.663724 | 4.2:-1361147 | MS.gene30247:CDS |
| TAAGTCAATTGCAGAAACAG+AGG | 0.664329 | 4.2:-1356685 | MS.gene30247:intron |
| ATTTACAAGGTATTGTTACG+CGG | 0.666912 | 4.2:-1361716 | MS.gene30247:intron |
| GTAAAATTATCATTGTTGGG+GGG | 0.668430 | 4.2:+1356097 | None:intergenic |
| AAATGAAGGTTCTTGAAGGG+CGG | 0.668784 | 4.2:-1358359 | MS.gene30247:intron |
| TACAAGGTATTGTTACGCGG+AGG | 0.681922 | 4.2:-1361713 | MS.gene30247:intron |
| TGAACTCTGTCCACCGACGA+CGG | 0.684385 | 4.2:+1362469 | None:intergenic |
| ATTACGTACCAATCTTGCGG+AGG | 0.697717 | 4.2:+1356065 | None:intergenic |
| TAGAGACGATATCGACTCTG+TGG | 0.698748 | 4.2:-1354506 | MS.gene30247:CDS |
| ATGCCCATGCAGCTGCTGTG+AGG | 0.716543 | 4.2:-1361183 | MS.gene30247:intron |
| GAAGATTACAGCATCCACGG+AGG | 0.775671 | 4.2:+1357388 | None:intergenic |
| AAAGCAAGAAGACAGTTACG+CGG | 0.786445 | 4.2:-1356225 | MS.gene30247:CDS |
| AAATGAATACCAGATCCACG+AGG | 0.806447 | 4.2:+1362401 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 1354495 | 1362606 | 1354495 | ID=MS.gene30247 |
| chr4.2 | mRNA | 1354495 | 1362606 | 1354495 | ID=MS.gene30247.t1;Parent=MS.gene30247 |
| chr4.2 | exon | 1362411 | 1362606 | 1362411 | ID=MS.gene30247.t1.exon1;Parent=MS.gene30247.t1 |
| chr4.2 | CDS | 1362411 | 1362606 | 1362411 | ID=cds.MS.gene30247.t1;Parent=MS.gene30247.t1 |
| chr4.2 | exon | 1361625 | 1361729 | 1361625 | ID=MS.gene30247.t1.exon2;Parent=MS.gene30247.t1 |
| chr4.2 | CDS | 1361625 | 1361729 | 1361625 | ID=cds.MS.gene30247.t1;Parent=MS.gene30247.t1 |
| chr4.2 | exon | 1361092 | 1361193 | 1361092 | ID=MS.gene30247.t1.exon3;Parent=MS.gene30247.t1 |
| chr4.2 | CDS | 1361092 | 1361193 | 1361092 | ID=cds.MS.gene30247.t1;Parent=MS.gene30247.t1 |
| chr4.2 | exon | 1360283 | 1360333 | 1360283 | ID=MS.gene30247.t1.exon4;Parent=MS.gene30247.t1 |
| chr4.2 | CDS | 1360283 | 1360333 | 1360283 | ID=cds.MS.gene30247.t1;Parent=MS.gene30247.t1 |
| chr4.2 | exon | 1360109 | 1360170 | 1360109 | ID=MS.gene30247.t1.exon5;Parent=MS.gene30247.t1 |
| chr4.2 | CDS | 1360109 | 1360170 | 1360109 | ID=cds.MS.gene30247.t1;Parent=MS.gene30247.t1 |
| chr4.2 | exon | 1358696 | 1358786 | 1358696 | ID=MS.gene30247.t1.exon6;Parent=MS.gene30247.t1 |
| chr4.2 | CDS | 1358696 | 1358786 | 1358696 | ID=cds.MS.gene30247.t1;Parent=MS.gene30247.t1 |
| chr4.2 | exon | 1358499 | 1358563 | 1358499 | ID=MS.gene30247.t1.exon7;Parent=MS.gene30247.t1 |
| chr4.2 | CDS | 1358499 | 1358563 | 1358499 | ID=cds.MS.gene30247.t1;Parent=MS.gene30247.t1 |
| chr4.2 | exon | 1358179 | 1358373 | 1358179 | ID=MS.gene30247.t1.exon8;Parent=MS.gene30247.t1 |
| chr4.2 | CDS | 1358179 | 1358373 | 1358179 | ID=cds.MS.gene30247.t1;Parent=MS.gene30247.t1 |
| chr4.2 | exon | 1357928 | 1358047 | 1357928 | ID=MS.gene30247.t1.exon9;Parent=MS.gene30247.t1 |
| chr4.2 | CDS | 1357928 | 1358047 | 1357928 | ID=cds.MS.gene30247.t1;Parent=MS.gene30247.t1 |
| chr4.2 | exon | 1357758 | 1357828 | 1357758 | ID=MS.gene30247.t1.exon10;Parent=MS.gene30247.t1 |
| chr4.2 | CDS | 1357758 | 1357828 | 1357758 | ID=cds.MS.gene30247.t1;Parent=MS.gene30247.t1 |
| chr4.2 | exon | 1357397 | 1357622 | 1357397 | ID=MS.gene30247.t1.exon11;Parent=MS.gene30247.t1 |
| chr4.2 | CDS | 1357397 | 1357622 | 1357397 | ID=cds.MS.gene30247.t1;Parent=MS.gene30247.t1 |
| chr4.2 | exon | 1356686 | 1356736 | 1356686 | ID=MS.gene30247.t1.exon12;Parent=MS.gene30247.t1 |
| chr4.2 | CDS | 1356686 | 1356736 | 1356686 | ID=cds.MS.gene30247.t1;Parent=MS.gene30247.t1 |
| chr4.2 | exon | 1356074 | 1356323 | 1356074 | ID=MS.gene30247.t1.exon13;Parent=MS.gene30247.t1 |
| chr4.2 | CDS | 1356074 | 1356323 | 1356074 | ID=cds.MS.gene30247.t1;Parent=MS.gene30247.t1 |
| chr4.2 | exon | 1355247 | 1355386 | 1355247 | ID=MS.gene30247.t1.exon14;Parent=MS.gene30247.t1 |
| chr4.2 | CDS | 1355247 | 1355386 | 1355247 | ID=cds.MS.gene30247.t1;Parent=MS.gene30247.t1 |
| chr4.2 | exon | 1354495 | 1354620 | 1354495 | ID=MS.gene30247.t1.exon15;Parent=MS.gene30247.t1 |
| chr4.2 | CDS | 1354495 | 1354620 | 1354495 | ID=cds.MS.gene30247.t1;Parent=MS.gene30247.t1 |
| Gene Sequence |
| Protein sequence |
