Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31317.t1 | XP_003609733.1 | 85.3 | 326 | 42 | 3 | 1 | 322 | 1 | 324 | 1.50E-150 | 542.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31317.t1 | Q9ZVT7 | 60.9 | 327 | 114 | 5 | 1 | 322 | 3 | 320 | 1.7e-107 | 390.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31317.t1 | B7FL19 | 85.3 | 326 | 42 | 3 | 1 | 322 | 1 | 324 | 1.1e-150 | 542.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene53118 | MS.gene31317 | PPI |
| MS.gene22316 | MS.gene31317 | PPI |
| MS.gene050621 | MS.gene31317 | PPI |
| MS.gene024073 | MS.gene31317 | PPI |
| MS.gene001670 | MS.gene31317 | PPI |
| MS.gene024674 | MS.gene31317 | PPI |
| MS.gene025936 | MS.gene31317 | PPI |
| MS.gene072735 | MS.gene31317 | PPI |
| MS.gene22822 | MS.gene31317 | PPI |
| MS.gene85900 | MS.gene31317 | PPI |
| MS.gene024471 | MS.gene31317 | PPI |
| MS.gene78555 | MS.gene31317 | PPI |
| MS.gene55323 | MS.gene31317 | PPI |
| MS.gene033519 | MS.gene31317 | PPI |
| MS.gene21656 | MS.gene31317 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31317.t1 | MTR_4g121550 | 85.276 | 326 | 42 | 3 | 1 | 322 | 1 | 324 | 0.0 | 567 |
| MS.gene31317.t1 | MTR_2g093790 | 76.852 | 324 | 27 | 4 | 1 | 324 | 1 | 276 | 7.23e-173 | 480 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31317.t1 | AT1G03360 | 61.162 | 327 | 113 | 6 | 1 | 322 | 3 | 320 | 5.11e-144 | 409 |
Find 54 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAGAGTATTGTCCACTTT+AGG | 0.290848 | 2.4:+8250697 | MS.gene31317:CDS |
| AAGGCTGGTGACATTGTTAT+AGG | 0.303613 | 2.4:+8247352 | MS.gene31317:CDS |
| CCTTGAGTACGCGATCTTCA+TGG | 0.346915 | 2.4:-8247219 | None:intergenic |
| ATCTTCTATCATGTCATCTC+TGG | 0.353592 | 2.4:-8250548 | None:intergenic |
| ACGCGATCTTCATGGTTGAT+AGG | 0.365746 | 2.4:-8247211 | None:intergenic |
| TGGTTCTGAGTTCTATGTTC+TGG | 0.394011 | 2.4:+8250798 | MS.gene31317:CDS |
| AAACCAACATTTCCATCATA+TGG | 0.395187 | 2.4:+8250459 | MS.gene31317:CDS |
| TATGGTATTGATTTAATACT+TGG | 0.403711 | 2.4:+8250487 | MS.gene31317:CDS |
| GATTTAATACTTGGCTGTAA+TGG | 0.406532 | 2.4:+8250496 | MS.gene31317:CDS |
| TTGGCTGTAATGGATTCATA+TGG | 0.413004 | 2.4:+8250506 | MS.gene31317:CDS |
| TATAACAATGTCACCAGCCT+TGG | 0.414901 | 2.4:-8247350 | None:intergenic |
| CATATGTATTCACTTGTCTC+TGG | 0.427412 | 2.4:-8250658 | None:intergenic |
| TGGTCAGAATCGTTGGAGAT+TGG | 0.435250 | 2.4:+8247482 | MS.gene31317:CDS |
| AGGCTGGTGACATTGTTATA+GGG | 0.439117 | 2.4:+8247353 | MS.gene31317:CDS |
| CGAGTGTAATAGAGATGAGA+GGG | 0.451668 | 2.4:+8247083 | None:intergenic |
| GTTGTATTGCAGCTTAGTAC+TGG | 0.459996 | 2.4:+8250397 | MS.gene31317:intron |
| TTTAACATTGGAAATCATCA+AGG | 0.462769 | 2.4:+8250726 | MS.gene31317:CDS |
| ATAACAATGTCACCAGCCTT+GGG | 0.467609 | 2.4:-8247349 | None:intergenic |
| TTCCATCATATGGAGCAGTA+TGG | 0.468455 | 2.4:+8250469 | MS.gene31317:CDS |
| CGCGATCTTCATGGTTGATA+GGG | 0.468771 | 2.4:-8247210 | None:intergenic |
| TGCTACTCTCTGTGGTGTTG+TGG | 0.476983 | 2.4:+8247276 | MS.gene31317:CDS |
| GAATATGCCCGATGGTCTAC+AGG | 0.480017 | 2.4:+8247548 | MS.gene31317:CDS |
| TTAAAGCTTGTGGATCAGAT+TGG | 0.485538 | 2.4:-8250579 | None:intergenic |
| ATCTTCTGATTCTTCTGTGA+CGG | 0.494275 | 2.4:+8247174 | MS.gene31317:CDS |
| TGTTAAAATGAATCCTAAAG+TGG | 0.495226 | 2.4:-8250710 | None:intergenic |
| AGACAAGTGAATACATATGC+AGG | 0.498234 | 2.4:+8250662 | MS.gene31317:CDS |
| TACCATACTGCTCCATATGA+TGG | 0.504131 | 2.4:-8250471 | None:intergenic |
| CAAAATACCTGTAGACCATC+GGG | 0.507180 | 2.4:-8247555 | None:intergenic |
| CTGAAAATCACGAACTACTT+CGG | 0.517598 | 2.4:-8250048 | None:intergenic |
| TGTAGGTTGGTCAGAATCGT+TGG | 0.520122 | 2.4:+8247475 | MS.gene31317:intron |
| CCATGAAGATCGCGTACTCA+AGG | 0.524287 | 2.4:+8247219 | MS.gene31317:CDS |
| GCGAGTGTAATAGAGATGAG+AGG | 0.530276 | 2.4:+8247082 | None:intergenic |
| TCAAGATACAAACCCAAGGC+TGG | 0.533344 | 2.4:+8247337 | MS.gene31317:CDS |
| ATCTTCATGGTTGATAGGGA+TGG | 0.535963 | 2.4:-8247206 | None:intergenic |
| CTTGATGTACACGACATGCT+TGG | 0.536719 | 2.4:+8250778 | MS.gene31317:CDS |
| CTTTCCATTGCTAGAGGCGA+AGG | 0.541185 | 2.4:+8249878 | MS.gene31317:intron |
| TTATTGGGAATTAAAGCTTG+TGG | 0.544595 | 2.4:-8250589 | None:intergenic |
| GCAAAATACCTGTAGACCAT+CGG | 0.552621 | 2.4:-8247556 | None:intergenic |
| GCTCCATATGATGGAAATGT+TGG | 0.555749 | 2.4:-8250462 | None:intergenic |
| GTTCCAGTGCCTTCTGTAGA+CGG | 0.559019 | 2.4:-8247138 | None:intergenic |
| TTAACATTGGAAATCATCAA+GGG | 0.564580 | 2.4:+8250727 | MS.gene31317:CDS |
| TGGCTGTAATGGATTCATAT+GGG | 0.574523 | 2.4:+8250507 | MS.gene31317:CDS |
| TGTTATAGGGCGTGTCATTG+AGG | 0.575935 | 2.4:+8247366 | MS.gene31317:CDS |
| GATCCGTCTACAGAAGGCAC+TGG | 0.590591 | 2.4:+8247135 | MS.gene31317:CDS |
| TGTAATGGATTCATATGGGT+CGG | 0.597510 | 2.4:+8250511 | MS.gene31317:CDS |
| CATGAAGATCGCGTACTCAA+GGG | 0.613406 | 2.4:+8247220 | MS.gene31317:CDS |
| TCAGAAGATCCGTCTACAGA+AGG | 0.616298 | 2.4:+8247129 | MS.gene31317:CDS |
| GACAAGTGAATACATATGCA+GGG | 0.623938 | 2.4:+8250663 | MS.gene31317:CDS |
| GATCGCGTACTCAAGGGACA+TGG | 0.633795 | 2.4:+8247226 | MS.gene31317:CDS |
| CATGGAACAGCTGATATCAA+CGG | 0.644757 | 2.4:+8247244 | MS.gene31317:CDS |
| TCTGCTATGAATATGCCCGA+TGG | 0.653631 | 2.4:+8247540 | MS.gene31317:CDS |
| GAAGTTGTTGCTACTCTCTG+TGG | 0.664301 | 2.4:+8247268 | MS.gene31317:CDS |
| GCGCTCAAGATACAAACCCA+AGG | 0.676543 | 2.4:+8247333 | MS.gene31317:CDS |
| GTACATCAAGATTCGCAGAG+AGG | 0.699952 | 2.4:-8250765 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTACTTACTTTTATTA+AGG | + | chr2.4:8249980-8249999 | MS.gene31317:intron | 10.0% |
| !!! | ATAAATAATCTTTAAGAAAT+AGG | + | chr2.4:8247725-8247744 | MS.gene31317:intron | 10.0% |
| !! | AAAAAATAGTAAAAATCTCT+AGG | + | chr2.4:8248220-8248239 | MS.gene31317:intron | 15.0% |
| !! | AAATTAATAGATAAAGATGA+GGG | + | chr2.4:8248431-8248450 | MS.gene31317:intron | 15.0% |
| !! | TCTAAATTATTAAGCTTAAT+TGG | - | chr2.4:8248631-8248650 | None:intergenic | 15.0% |
| !!! | AGAGATTTTTACTATTTTTT+CGG | - | chr2.4:8248220-8248239 | None:intergenic | 15.0% |
| !!! | TACTTTTATTAAGGAAATAA+CGG | + | chr2.4:8249989-8250008 | MS.gene31317:intron | 15.0% |
| !! | AAAACAAGAAATCTCTATAA+AGG | - | chr2.4:8247587-8247606 | None:intergenic | 20.0% |
| !! | AAACAAGAAATCTCTATAAA+GGG | - | chr2.4:8247586-8247605 | None:intergenic | 20.0% |
| !! | AAGAAATCAAATGTATGATA+TGG | - | chr2.4:8248607-8248626 | None:intergenic | 20.0% |
| !! | AATTTCAAGCTATTAGAATT+TGG | - | chr2.4:8249855-8249874 | None:intergenic | 20.0% |
| !! | ACTCAAATAATATTATGCTA+TGG | - | chr2.4:8247900-8247919 | None:intergenic | 20.0% |
| !! | ATAGCATAATATTATTTGAG+TGG | + | chr2.4:8247899-8247918 | MS.gene31317:intron | 20.0% |
| !! | ATTCCCAATAAAAATTATGT+CGG | + | chr2.4:8250601-8250620 | MS.gene31317:CDS | 20.0% |
| !! | ATTGATATCAACATTAACAT+CGG | - | chr2.4:8248115-8248134 | None:intergenic | 20.0% |
| !! | ATTTCAAGCTATTAGAATTT+GGG | - | chr2.4:8249854-8249873 | None:intergenic | 20.0% |
| !! | GAAATTAATAGATAAAGATG+AGG | + | chr2.4:8248430-8248449 | MS.gene31317:intron | 20.0% |
| !! | GATCTTATAAGAATCAAATA+TGG | + | chr2.4:8249471-8249490 | MS.gene31317:intron | 20.0% |
| !!! | GAAATAGGAAATTTTATAGT+AGG | + | chr2.4:8247740-8247759 | MS.gene31317:intron | 20.0% |
| !!! | TATGGTATTGATTTAATACT+TGG | + | chr2.4:8250487-8250506 | MS.gene31317:CDS | 20.0% |
| !!! | TGATAATGTGTTTATAAAGT+GGG | + | chr2.4:8249778-8249797 | MS.gene31317:intron | 20.0% |
| !!! | TTTAGGATTCATTTTAACAT+TGG | + | chr2.4:8250714-8250733 | MS.gene31317:CDS | 20.0% |
| ! | AAATCAAATGTATGATATGG+TGG | - | chr2.4:8248604-8248623 | None:intergenic | 25.0% |
| ! | AAGAAGTCAAAAATATGGAA+AGG | + | chr2.4:8250094-8250113 | MS.gene31317:CDS | 25.0% |
| ! | AGATCTTACAGAATCAAATA+TGG | - | chr2.4:8248915-8248934 | None:intergenic | 25.0% |
| ! | ATAAAAGAACTATGTTTCAC+AGG | - | chr2.4:8250137-8250156 | None:intergenic | 25.0% |
| ! | ATAATGTGTTTATAAAGTGG+GGG | + | chr2.4:8249780-8249799 | MS.gene31317:intron | 25.0% |
| ! | ATCAATAGTGTCATATCTTA+CGG | + | chr2.4:8248294-8248313 | MS.gene31317:intron | 25.0% |
| ! | CACTTTATAAACACATTATC+AGG | - | chr2.4:8249779-8249798 | None:intergenic | 25.0% |
| ! | GATAATGTGTTTATAAAGTG+GGG | + | chr2.4:8249779-8249798 | MS.gene31317:intron | 25.0% |
| ! | GTTAATGTTGATATCAATGT+TGG | + | chr2.4:8248117-8248136 | MS.gene31317:intron | 25.0% |
| ! | TAAAAGAACTATGTTTCACA+GGG | - | chr2.4:8250136-8250155 | None:intergenic | 25.0% |
| ! | TCTGATAGTAACTTTATGTA+TGG | + | chr2.4:8250281-8250300 | MS.gene31317:intron | 25.0% |
| ! | TGAAGTAGGTAAACTTATTT+AGG | + | chr2.4:8248377-8248396 | MS.gene31317:intron | 25.0% |
| ! | TGTTAAAATGAATCCTAAAG+TGG | - | chr2.4:8250713-8250732 | None:intergenic | 25.0% |
| ! | TTAACATTGGAAATCATCAA+GGG | + | chr2.4:8250727-8250746 | MS.gene31317:CDS | 25.0% |
| ! | TTATGTTTCATAAGTGTAAG+AGG | + | chr2.4:8247773-8247792 | MS.gene31317:intron | 25.0% |
| ! | TTCAAATCAAAAGCAGAAAA+CGG | - | chr2.4:8247416-8247435 | None:intergenic | 25.0% |
| ! | TTGATATCAACATTAACATC+GGG | - | chr2.4:8248114-8248133 | None:intergenic | 25.0% |
| ! | TTTAACATTGGAAATCATCA+AGG | + | chr2.4:8250726-8250745 | MS.gene31317:CDS | 25.0% |
| ! | TTTCAAGCTATTAGAATTTG+GGG | - | chr2.4:8249853-8249872 | None:intergenic | 25.0% |
| !! | AAGACCGACATAATTTTTAT+TGG | - | chr2.4:8250608-8250627 | None:intergenic | 25.0% |
| !! | AATGTATGTTTTCATGAAGT+AGG | + | chr2.4:8248363-8248382 | MS.gene31317:intron | 25.0% |
| !! | AGACCGACATAATTTTTATT+GGG | - | chr2.4:8250607-8250626 | None:intergenic | 25.0% |
| !! | CTGATAATGTGTTTATAAAG+TGG | + | chr2.4:8249777-8249796 | MS.gene31317:intron | 25.0% |
| !! | GAAATTTTATAGTAGGTACT+AGG | + | chr2.4:8247747-8247766 | MS.gene31317:intron | 25.0% |
| !! | GCATTGAAAATTTTCTTCAA+CGG | - | chr2.4:8248799-8248818 | None:intergenic | 25.0% |
| !! | GTAACTTTGTACTACATTTT+GGG | + | chr2.4:8250313-8250332 | MS.gene31317:intron | 25.0% |
| !! | TCTTTTACTTCTGTTACTAA+TGG | + | chr2.4:8250368-8250387 | MS.gene31317:intron | 25.0% |
| !! | TGTAACTTTGTACTACATTT+TGG | + | chr2.4:8250312-8250331 | MS.gene31317:intron | 25.0% |
| !! | TTTTGTCTCTTCACTAAATA+TGG | - | chr2.4:8250442-8250461 | None:intergenic | 25.0% |
| !!! | AATTGTTTTTTGTGTTGTGT+AGG | + | chr2.4:8247458-8247477 | MS.gene31317:intron | 25.0% |
| !!! | ATTTTGATCAGCACATAAAT+AGG | + | chr2.4:8248517-8248536 | MS.gene31317:intron | 25.0% |
| !!! | CAAAGTTCTTTGGTTTTATA+GGG | + | chr2.4:8247622-8247641 | MS.gene31317:intron | 25.0% |
| AAACCAACATTTCCATCATA+TGG | + | chr2.4:8250459-8250478 | MS.gene31317:CDS | 30.0% | |
| AAATATGGAAGATGCTGAAA+CGG | - | chr2.4:8249313-8249294 | None:intergenic | 30.0% | |
| AACATCCAAGAAAAACAGAA+TGG | + | chr2.4:8247799-8247818 | MS.gene31317:intron | 30.0% | |
| AAGTATGTCTACAATGATTG+TGG | + | chr2.4:8249627-8249646 | MS.gene31317:intron | 30.0% | |
| AATAATCCACGAAAAGTTAC+AGG | + | chr2.4:8247692-8247711 | MS.gene31317:intron | 30.0% | |
| ACAAAAGGTTGTTCATGTAT+CGG | - | chr2.4:8248180-8248199 | None:intergenic | 30.0% | |
| AGCTACAAAATTTGTATGCT+TGG | - | chr2.4:8250256-8250275 | None:intergenic | 30.0% | |
| AGGAAGAAAAGAAAACAAGA+GGG | + | chr2.4:8249594-8249613 | MS.gene31317:intron | 30.0% | |
| AGTACTTTCAAAACTCAAGA+TGG | - | chr2.4:8248556-8248575 | None:intergenic | 30.0% | |
| ATAAGAATCAAATATGGACG+AGG | + | chr2.4:8249477-8249496 | MS.gene31317:intron | 30.0% | |
| ATAATCCACGAAAAGTTACA+GGG | + | chr2.4:8247693-8247712 | MS.gene31317:intron | 30.0% | |
| ATCATTGTAGACATACTTGT+TGG | - | chr2.4:8249625-8249644 | None:intergenic | 30.0% | |
| ATGTTGATATCAATGTTGGT+AGG | + | chr2.4:8248121-8248140 | MS.gene31317:intron | 30.0% | |
| CAAGCAAGAAGTCAAAAATA+TGG | + | chr2.4:8250089-8250108 | MS.gene31317:CDS | 30.0% | |
| CTTATTCTTTCCCTCAAAAA+TGG | + | chr2.4:8250167-8250186 | MS.gene31317:intron | 30.0% | |
| GATTTAATACTTGGCTGTAA+TGG | + | chr2.4:8250496-8250515 | MS.gene31317:CDS | 30.0% | |
| GGTCTTACAAGAATCAAATA+TGG | + | chr2.4:8249345-8249364 | MS.gene31317:intron | 30.0% | |
| GTTACGATGTAACAACATTA+AGG | + | chr2.4:8249086-8249105 | MS.gene31317:intron | 30.0% | |
| TAAATTATGTACATGTCCAC+AGG | + | chr2.4:8250025-8250044 | MS.gene31317:intron | 30.0% | |
| TACAGAATCAAATATGGATG+AGG | - | chr2.4:8248909-8248928 | None:intergenic | 30.0% | |
| TATGTCTACAATGATTGTAG+CGG | - | chr2.4:8248683-8248702 | None:intergenic | 30.0% | |
| TGTGGACATGTACATAATTT+AGG | - | chr2.4:8250026-8250045 | None:intergenic | 30.0% | |
| TTATTGGGAATTAAAGCTTG+TGG | - | chr2.4:8250592-8250611 | None:intergenic | 30.0% | |
| ! | AAGCAGTTCATAATGAGTTT+TGG | + | chr2.4:8247986-8248005 | MS.gene31317:intron | 30.0% |
| ! | AATCGAGAAAACTTTTCTGA+AGG | + | chr2.4:8249324-8249343 | MS.gene31317:intron | 30.0% |
| ! | GCATACAAATTTTGTAGCTA+TGG | + | chr2.4:8250257-8250276 | MS.gene31317:intron | 30.0% |
| ! | GTGCTGATCAAAATTTCAAA+AGG | - | chr2.4:8248511-8248530 | None:intergenic | 30.0% |
| ! | TGTTGGTTGTGAAACAAATA+TGG | + | chr2.4:8249279-8249298 | MS.gene31317:intron | 30.0% |
| ! | TGTTGGTTGTGAAACAAATA+TGG | - | chr2.4:8249298-8249279 | None:intergenic | 30.0% |
| ! | TTGTTGTTACATTCTGTTCT+GGG | - | chr2.4:8249025-8249044 | None:intergenic | 30.0% |
| !! | AAATATGCGCTGTATTTTTG+AGG | + | chr2.4:8249918-8249937 | MS.gene31317:CDS | 30.0% |
| !! | TGTGTCAACATTTGATTTGA+TGG | + | chr2.4:8248335-8248354 | MS.gene31317:intron | 30.0% |
| !! | TTTGTTGTTACATTCTGTTC+TGG | - | chr2.4:8249026-8249045 | None:intergenic | 30.0% |
| !!! | ATGCTTTTTTTCTGCAATCT+GGG | + | chr2.4:8248249-8248268 | MS.gene31317:intron | 30.0% |
| !!! | ATTTTTGACTTCTTGCTTGA+AGG | - | chr2.4:8250088-8250107 | None:intergenic | 30.0% |
| !!! | GCAAAGTTCTTTGGTTTTAT+AGG | + | chr2.4:8247621-8247640 | MS.gene31317:intron | 30.0% |
| AATAGTGTCATATCTTACGG+AGG | + | chr2.4:8248297-8248316 | MS.gene31317:intron | 35.0% | |
| ACAAGAATCAAATATGGACG+AGG | + | chr2.4:8249351-8249370 | MS.gene31317:intron | 35.0% | |
| AGACAAGTGAATACATATGC+AGG | + | chr2.4:8250662-8250681 | MS.gene31317:CDS | 35.0% | |
| ATCATCGTAGACATAGTTGT+TGG | - | chr2.4:8249557-8249576 | None:intergenic | 35.0% | |
| ATCTTCTATCATGTCATCTC+TGG | - | chr2.4:8250551-8250570 | None:intergenic | 35.0% | |
| ATCTTCTGATTCTTCTGTGA+CGG | + | chr2.4:8247174-8247193 | MS.gene31317:CDS | 35.0% | |
| ATGATCCAAGGTTCAAAAGT+AGG | - | chr2.4:8248882-8248901 | None:intergenic | 35.0% | |
| ATGTAGTCAGCAAAGTTCTT+TGG | + | chr2.4:8247612-8247631 | MS.gene31317:intron | 35.0% | |
| ATTGTTCTTTCCATTGCTAG+AGG | + | chr2.4:8249872-8249891 | MS.gene31317:intron | 35.0% | |
| CAGGAAGAAAAGAAAACAAG+AGG | + | chr2.4:8249593-8249612 | MS.gene31317:intron | 35.0% | |
| CATATGTATTCACTTGTCTC+TGG | - | chr2.4:8250661-8250680 | None:intergenic | 35.0% | |
| CTGAAAATCACGAACTACTT+CGG | - | chr2.4:8250051-8250070 | None:intergenic | 35.0% | |
| GACAAGTGAATACATATGCA+GGG | + | chr2.4:8250663-8250682 | MS.gene31317:CDS | 35.0% | |
| GATCAGCACATAAATAGGTA+TGG | + | chr2.4:8248522-8248541 | MS.gene31317:intron | 35.0% | |
| GTAACAACAAATTCACAGCA+AGG | + | chr2.4:8249035-8249054 | MS.gene31317:intron | 35.0% | |
| TATTTACACGCTGTATGTGT+TGG | + | chr2.4:8249262-8249281 | MS.gene31317:intron | 35.0% | |
| TGCCAATGGCAAAACAATTA+TGG | + | chr2.4:8248461-8248480 | MS.gene31317:intron | 35.0% | |
| TGTTGTTACATTCTGTTCTG+GGG | - | chr2.4:8249024-8249043 | None:intergenic | 35.0% | |
| TTAAAGCTTGTGGATCAGAT+TGG | - | chr2.4:8250582-8250601 | None:intergenic | 35.0% | |
| TTTCCCAATAGATCTTGGAT+AGG | - | chr2.4:8249684-8249703 | None:intergenic | 35.0% | |
| TTTCCCTCAAAAATGGTACT+CGG | + | chr2.4:8250174-8250193 | MS.gene31317:intron | 35.0% | |
| ! | AAGCTATTAGAATTTGGGGT+TGG | - | chr2.4:8249849-8249868 | None:intergenic | 35.0% |
| ! | AGCTATTAGAATTTGGGGTT+GGG | - | chr2.4:8249848-8249867 | None:intergenic | 35.0% |
| ! | ATTCGTAGTGAATCGATTCT+AGG | + | chr2.4:8248009-8248028 | MS.gene31317:intron | 35.0% |
| ! | GATACATGAACAACCTTTTG+TGG | + | chr2.4:8248179-8248198 | MS.gene31317:intron | 35.0% |
| ! | GATTGTGTCTTTTCTTCAAC+AGG | + | chr2.4:8249574-8249593 | MS.gene31317:intron | 35.0% |
| ! | TTCAATGCTTTTCTTCACCA+AGG | + | chr2.4:8248811-8248830 | MS.gene31317:intron | 35.0% |
| !! | ATAACCGAGTACCATTTTTG+AGG | - | chr2.4:8250181-8250200 | None:intergenic | 35.0% |
| !! | GACCATAATTGTTTTGCCAT+TGG | - | chr2.4:8248466-8248485 | None:intergenic | 35.0% |
| !! | GCAAACCATTCTGTTTTTCT+TGG | - | chr2.4:8247807-8247826 | None:intergenic | 35.0% |
| !! | GTTAGAGTATTGTCCACTTT+AGG | + | chr2.4:8250697-8250716 | MS.gene31317:CDS | 35.0% |
| !! | TAACCGAGTACCATTTTTGA+GGG | - | chr2.4:8250180-8250199 | None:intergenic | 35.0% |
| !! | TGGCTGTAATGGATTCATAT+GGG | + | chr2.4:8250507-8250526 | MS.gene31317:CDS | 35.0% |
| !! | TGTAATGGATTCATATGGGT+CGG | + | chr2.4:8250511-8250530 | MS.gene31317:CDS | 35.0% |
| !! | TTGGCTGTAATGGATTCATA+TGG | + | chr2.4:8250506-8250525 | MS.gene31317:CDS | 35.0% |
| !! | TTTTTCAACCTTTGATTCGC+AGG | - | chr2.4:8249172-8249191 | None:intergenic | 35.0% |
| !!! | GAGTTTTGAAAGTACTCGAT+TGG | + | chr2.4:8248560-8248579 | MS.gene31317:intron | 35.0% |
| !!! | GATGCTTTTTTTCTGCAATC+TGG | + | chr2.4:8248248-8248267 | MS.gene31317:intron | 35.0% |
| !!! | GTTTTTTGTGTTGTGTAGGT+TGG | + | chr2.4:8247462-8247481 | MS.gene31317:intron | 35.0% |
| AAAGGTTGTTCATGTATCGG+AGG | - | chr2.4:8248177-8248196 | None:intergenic | 40.0% | |
| AAATCCCCAAATATGTCCCA+AGG | - | chr2.4:8248062-8248081 | None:intergenic | 40.0% | |
| AAGGCCTATCCAAGATCTAT+TGG | + | chr2.4:8249677-8249696 | MS.gene31317:intron | 40.0% | |
| AAGGCTGGTGACATTGTTAT+AGG | + | chr2.4:8247352-8247371 | MS.gene31317:CDS | 40.0% | |
| AAGTAGGCTTCCAATGAACT+CGG | - | chr2.4:8248866-8248885 | None:intergenic | 40.0% | |
| ACATCGTAACTGTGAATCAG+AGG | - | chr2.4:8249076-8249095 | None:intergenic | 40.0% | |
| ACTTTGTACCTGCGAATCAA+AGG | + | chr2.4:8249161-8249180 | MS.gene31317:intron | 40.0% | |
| AGGCCTATCCAAGATCTATT+GGG | + | chr2.4:8249678-8249697 | MS.gene31317:intron | 40.0% | |
| AGGCTGCAATTGTAGAAGAT+GGG | + | chr2.4:8248029-8248048 | MS.gene31317:intron | 40.0% | |
| AGGCTGGTGACATTGTTATA+GGG | + | chr2.4:8247353-8247372 | MS.gene31317:CDS | 40.0% | |
| ATAACAATGTCACCAGCCTT+GGG | - | chr2.4:8247352-8247371 | None:intergenic | 40.0% | |
| ATCATGTGCATCACCACAAA+AGG | - | chr2.4:8248195-8248214 | None:intergenic | 40.0% | |
| ATGAGGGTTACAAATGCCAA+TGG | + | chr2.4:8248447-8248466 | MS.gene31317:intron | 40.0% | |
| ATGGAAGATGCTGAAACGAA+AGG | + | chr2.4:8249298-8249317 | MS.gene31317:intron | 40.0% | |
| CAAAATACCTGTAGACCATC+GGG | - | chr2.4:8247558-8247577 | None:intergenic | 40.0% | |
| CATGGAACAGCTGATATCAA+CGG | + | chr2.4:8247244-8247263 | MS.gene31317:CDS | 40.0% | |
| CCAGTATGAGACAGTACAAA+TGG | + | chr2.4:8250210-8250229 | MS.gene31317:intron | 40.0% | |
| CCATTTGTACTGTCTCATAC+TGG | - | chr2.4:8250213-8250232 | None:intergenic | 40.0% | |
| CCTTACAAAGTATGCTGGTA+AGG | - | chr2.4:8249815-8249834 | None:intergenic | 40.0% | |
| CCTTACCAGCATACTTTGTA+AGG | + | chr2.4:8249812-8249831 | MS.gene31317:intron | 40.0% | |
| CTATTGGGAAACCTGCTATT+AGG | + | chr2.4:8249693-8249712 | MS.gene31317:intron | 40.0% | |
| CTCAACCTTACAAAGTATGC+TGG | - | chr2.4:8249820-8249839 | None:intergenic | 40.0% | |
| GCAAAATACCTGTAGACCAT+CGG | - | chr2.4:8247559-8247578 | None:intergenic | 40.0% | |
| GTCATATCTTACGGAGGTTA+GGG | + | chr2.4:8248303-8248322 | MS.gene31317:intron | 40.0% | |
| GTCTCACGTTGGATAAGATA+TGG | + | chr2.4:8249753-8249772 | MS.gene31317:intron | 40.0% | |
| GTTGTATTGCAGCTTAGTAC+TGG | + | chr2.4:8250397-8250416 | MS.gene31317:intron | 40.0% | |
| TACCATACTGCTCCATATGA+TGG | - | chr2.4:8250474-8250493 | None:intergenic | 40.0% | |
| TAGGCTGCAATTGTAGAAGA+TGG | + | chr2.4:8248028-8248047 | MS.gene31317:intron | 40.0% | |
| TATAACAATGTCACCAGCCT+TGG | - | chr2.4:8247353-8247372 | None:intergenic | 40.0% | |
| TCATATCTTACGGAGGTTAG+GGG | + | chr2.4:8248304-8248323 | MS.gene31317:intron | 40.0% | |
| TGTATGCTTGGATCACAAAC+AGG | - | chr2.4:8250244-8250263 | None:intergenic | 40.0% | |
| TGTCATATCTTACGGAGGTT+AGG | + | chr2.4:8248302-8248321 | MS.gene31317:intron | 40.0% | |
| TTATTGCAAGCTTGGCATCA+AGG | + | chr2.4:8249658-8249677 | MS.gene31317:intron | 40.0% | |
| TTCCATCATATGGAGCAGTA+TGG | + | chr2.4:8250469-8250488 | MS.gene31317:CDS | 40.0% | |
| TTGAAACCGTGACAAAGTGA+CGG | - | chr2.4:8249123-8249142 | None:intergenic | 40.0% | |
| TTGCTGAAAAAGAGGCAGAA+AGG | + | chr2.4:8250821-8250840 | MS.gene31317:CDS | 40.0% | |
| ! | AAAGACCCTGTAACTTTTCG+TGG | - | chr2.4:8247701-8247720 | None:intergenic | 40.0% |
| ! | AAGTAGCCTTACAACGAACT+CGG | + | chr2.4:8249394-8249413 | MS.gene31317:intron | 40.0% |
| ! | GCTCCATATGATGGAAATGT+TGG | - | chr2.4:8250465-8250484 | None:intergenic | 40.0% |
| ! | GGGACATATTTGGGGATTTT+GGG | + | chr2.4:8248063-8248082 | MS.gene31317:intron | 40.0% |
| ! | GTTCGTGATTTTCAGCATGA+CGG | + | chr2.4:8250056-8250075 | MS.gene31317:CDS | 40.0% |
| ! | GTTCGTTGTAAGGCTACTTT+CGG | - | chr2.4:8249393-8249412 | None:intergenic | 40.0% |
| ! | TGGGACATATTTGGGGATTT+TGG | + | chr2.4:8248062-8248081 | MS.gene31317:intron | 40.0% |
| ! | TGTGCACTTCGTTCTGTTTT+GGG | + | chr2.4:8249234-8249253 | MS.gene31317:intron | 40.0% |
| ! | TGTTCTGGTTGCTGAAAAAG+AGG | + | chr2.4:8250813-8250832 | MS.gene31317:CDS | 40.0% |
| ! | TTGTGCACTTCGTTCTGTTT+TGG | + | chr2.4:8249233-8249252 | MS.gene31317:intron | 40.0% |
| !! | ATCTTCATGGTTGATAGGGA+TGG | - | chr2.4:8247209-8247228 | None:intergenic | 40.0% |
| !! | CAGTCTTGTTATTGCAAGCT+TGG | + | chr2.4:8249650-8249669 | MS.gene31317:intron | 40.0% |
| !! | TATGCGCTGTATTTTTGAGG+AGG | + | chr2.4:8249921-8249940 | MS.gene31317:CDS | 40.0% |
| !! | TGGTTCTGAGTTCTATGTTC+TGG | + | chr2.4:8250798-8250817 | MS.gene31317:CDS | 40.0% |
| AAAGCCTTGGTGAAGCAAAC+AGG | + | chr2.4:8249433-8249452 | MS.gene31317:intron | 45.0% | |
| AAGCCTTGGTGAAGCAAACA+GGG | + | chr2.4:8249434-8249453 | MS.gene31317:intron | 45.0% | |
| ACAGTGCCTTGGGACATATT+TGG | + | chr2.4:8248053-8248072 | MS.gene31317:intron | 45.0% | |
| ACGCGATCTTCATGGTTGAT+AGG | - | chr2.4:8247214-8247233 | None:intergenic | 45.0% | |
| AGTGCCTTGGGACATATTTG+GGG | + | chr2.4:8248055-8248074 | MS.gene31317:intron | 45.0% | |
| ATGGAAGATGCTGAAACGGA+AGG | - | chr2.4:8248961-8248980 | None:intergenic | 45.0% | |
| ATGTTTCCAGCTGTAGGTGT+TGG | - | chr2.4:8248997-8249016 | None:intergenic | 45.0% | |
| CAAAGTATGCTGGTAAGGTG+AGG | - | chr2.4:8249810-8249829 | None:intergenic | 45.0% | |
| CAGTGCCTTGGGACATATTT+GGG | + | chr2.4:8248054-8248073 | MS.gene31317:intron | 45.0% | |
| CATGAAGATCGCGTACTCAA+GGG | + | chr2.4:8247220-8247239 | MS.gene31317:CDS | 45.0% | |
| CTAGAGCATGACCTAATAGC+AGG | - | chr2.4:8249707-8249726 | None:intergenic | 45.0% | |
| CTTGATGTACACGACATGCT+TGG | + | chr2.4:8250778-8250797 | MS.gene31317:CDS | 45.0% | |
| GAAGTTGTTGCTACTCTCTG+TGG | + | chr2.4:8247268-8247287 | MS.gene31317:CDS | 45.0% | |
| GCAGCAACAAGAACAGCAAA+AGG | - | chr2.4:8248774-8248793 | None:intergenic | 45.0% | |
| GCAGGTTTCCCAATAGATCT+TGG | - | chr2.4:8249689-8249708 | None:intergenic | 45.0% | |
| GGATGAGGCTAAATGATCCA+AGG | - | chr2.4:8248894-8248913 | None:intergenic | 45.0% | |
| GTACATCAAGATTCGCAGAG+AGG | - | chr2.4:8250768-8250787 | None:intergenic | 45.0% | |
| TCAAGATACAAACCCAAGGC+TGG | + | chr2.4:8247337-8247356 | MS.gene31317:CDS | 45.0% | |
| TCAGAAGATCCGTCTACAGA+AGG | + | chr2.4:8247129-8247148 | MS.gene31317:CDS | 45.0% | |
| TCTGCTATGAATATGCCCGA+TGG | + | chr2.4:8247540-8247559 | MS.gene31317:CDS | 45.0% | |
| TCTTCAACAGCAGCTCAAAC+AGG | - | chr2.4:8248735-8248754 | None:intergenic | 45.0% | |
| TGAAACGGAAGGAAGAATCG+AGG | - | chr2.4:8248950-8248969 | None:intergenic | 45.0% | |
| TGAGACTCTTCAACACAAGC+AGG | - | chr2.4:8249739-8249758 | None:intergenic | 45.0% | |
| TGGTCAGAATCGTTGGAGAT+TGG | + | chr2.4:8247482-8247501 | MS.gene31317:CDS | 45.0% | |
| TGTGTTGAAGAGTCTCACGT+TGG | + | chr2.4:8249742-8249761 | MS.gene31317:intron | 45.0% | |
| TTGGGAAGCTCTTAGTTGCA+GGG | + | chr2.4:8248081-8248100 | MS.gene31317:intron | 45.0% | |
| TTTCCCTGTTTGCTTCACCA+AGG | - | chr2.4:8249440-8249459 | None:intergenic | 45.0% | |
| TTTGGGAAGCTCTTAGTTGC+AGG | + | chr2.4:8248080-8248099 | MS.gene31317:intron | 45.0% | |
| ! | AGTAGCCTTACAACGAACTC+GGG | + | chr2.4:8249395-8249414 | MS.gene31317:intron | 45.0% |
| ! | CGCGATCTTCATGGTTGATA+GGG | - | chr2.4:8247213-8247232 | None:intergenic | 45.0% |
| ! | CTGAAACCGTCACTTTGTCA+CGG | + | chr2.4:8249114-8249133 | MS.gene31317:intron | 45.0% |
| ! | GTGCACTTCGTTCTGTTTTG+GGG | + | chr2.4:8249235-8249254 | MS.gene31317:intron | 45.0% |
| ! | TCTGCAATCTGGGACTGATT+GGG | + | chr2.4:8248259-8248278 | MS.gene31317:intron | 45.0% |
| ! | TGTTATAGGGCGTGTCATTG+AGG | + | chr2.4:8247366-8247385 | MS.gene31317:CDS | 45.0% |
| ! | TTCTGCAATCTGGGACTGAT+TGG | + | chr2.4:8248258-8248277 | MS.gene31317:intron | 45.0% |
| !! | CTTTGAAGTGAGGCTGAGAT+AGG | + | chr2.4:8248834-8248853 | MS.gene31317:intron | 45.0% |
| !! | GGAAGCCTACTTTTGAACCT+TGG | + | chr2.4:8248874-8248893 | MS.gene31317:intron | 45.0% |
| !! | GGACTGATTGGGTTTTTGGA+GGG | + | chr2.4:8248270-8248289 | MS.gene31317:intron | 45.0% |
| !! | TCTGGGACTGATTGGGTTTT+TGG | + | chr2.4:8248266-8248285 | MS.gene31317:intron | 45.0% |
| !! | TGTAGGTTGGTCAGAATCGT+TGG | + | chr2.4:8247475-8247494 | MS.gene31317:intron | 45.0% |
| !! | TTCACCAAGGCTTTGAAGTG+AGG | + | chr2.4:8248824-8248843 | MS.gene31317:intron | 45.0% |
| !! | TTCACCAAGGCTTTGAAGTG+AGG | - | chr2.4:8248843-8248824 | None:intergenic | 45.0% |
| AGAAGATGGGAACAGTGCCT+TGG | + | chr2.4:8248042-8248061 | MS.gene31317:intron | 50.0% | |
| AGGATCGCGAGTTACCTTGT+GGG | + | chr2.4:8248141-8248160 | MS.gene31317:intron | 50.0% | |
| AGTGAGGCTGAGATAGGTTG+AGG | + | chr2.4:8248840-8248859 | MS.gene31317:intron | 50.0% | |
| CAACAGCAGCTCAAACAGGA+GGG | - | chr2.4:8248731-8248750 | None:intergenic | 50.0% | |
| CCATGAAGATCGCGTACTCA+AGG | + | chr2.4:8247219-8247238 | MS.gene31317:CDS | 50.0% | |
| CCTTGAGTACGCGATCTTCA+TGG | - | chr2.4:8247222-8247241 | None:intergenic | 50.0% | |
| CTCTTCAACACAAGCAGGAC+TGG | - | chr2.4:8249734-8249753 | None:intergenic | 50.0% | |
| CTTTCCATTGCTAGAGGCGA+AGG | + | chr2.4:8249878-8249897 | MS.gene31317:intron | 50.0% | |
| GAAGATGGGAACAGTGCCTT+GGG | + | chr2.4:8248043-8248062 | MS.gene31317:intron | 50.0% | |
| GAATATGCCCGATGGTCTAC+AGG | + | chr2.4:8247548-8247567 | MS.gene31317:CDS | 50.0% | |
| GAGGATCAAGCAATCCCACA+AGG | - | chr2.4:8248158-8248177 | None:intergenic | 50.0% | |
| GCGCTCAAGATACAAACCCA+AGG | + | chr2.4:8247333-8247352 | MS.gene31317:CDS | 50.0% | |
| GTTCCAGTGCCTTCTGTAGA+CGG | - | chr2.4:8247141-8247160 | None:intergenic | 50.0% | |
| TAGGATCGCGAGTTACCTTG+TGG | + | chr2.4:8248140-8248159 | MS.gene31317:intron | 50.0% | |
| TCAACAGCAGCTCAAACAGG+AGG | - | chr2.4:8248732-8248751 | None:intergenic | 50.0% | |
| TCACAACCAACACCTACAGC+TGG | + | chr2.4:8248988-8249007 | MS.gene31317:intron | 50.0% | |
| TCAGCCTCACTTCAAAGCCT+TGG | + | chr2.4:8249420-8249439 | MS.gene31317:intron | 50.0% | |
| TCAGCCTCACTTCAAAGCCT+TGG | - | chr2.4:8249439-8249420 | None:intergenic | 50.0% | |
| ! | GTAAGGCTACTTTCGGACCT+TGG | - | chr2.4:8249386-8249405 | None:intergenic | 50.0% |
| ! | TAGGTTGAGGCCGAGTTCAT+TGG | + | chr2.4:8248853-8248872 | MS.gene31317:intron | 50.0% |
| ! | TGCTACTCTCTGTGGTGTTG+TGG | + | chr2.4:8247276-8247295 | MS.gene31317:CDS | 50.0% |
| !! | AAGGCTTTGAAGTGAGGCTG+AGG | - | chr2.4:8248849-8248830 | None:intergenic | 50.0% |
| !! | GGGACTGATTGGGTTTTTGG+AGG | + | chr2.4:8248269-8248288 | MS.gene31317:intron | 50.0% |
| CTGTCCTTCGCCTCTAGCAA+TGG | - | chr2.4:8249885-8249904 | None:intergenic | 55.0% | |
| GATCGCGTACTCAAGGGACA+TGG | + | chr2.4:8247226-8247245 | MS.gene31317:CDS | 55.0% | |
| GGACGAGGCTACAGAATCCA+AGG | + | chr2.4:8249366-8249385 | MS.gene31317:intron | 55.0% | |
| GGCTGCATGTTTCCAGCTGT+AGG | - | chr2.4:8249003-8249022 | None:intergenic | 55.0% | |
| TCACGAACTACTTCGGCCTG+TGG | - | chr2.4:8250044-8250063 | None:intergenic | 55.0% | |
| TGAGGCCCGAGTTCGTTGTA+AGG | - | chr2.4:8249403-8249422 | None:intergenic | 55.0% | |
| ! | GATCCGTCTACAGAAGGCAC+TGG | + | chr2.4:8247135-8247154 | MS.gene31317:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 8247097 | 8250867 | 8247097 | ID=MS.gene31317 |
| chr2.4 | mRNA | 8247097 | 8250867 | 8247097 | ID=MS.gene31317.t1;Parent=MS.gene31317 |
| chr2.4 | exon | 8247097 | 8247387 | 8247097 | ID=MS.gene31317.t1.exon1;Parent=MS.gene31317.t1 |
| chr2.4 | CDS | 8247097 | 8247387 | 8247097 | ID=cds.MS.gene31317.t1;Parent=MS.gene31317.t1 |
| chr2.4 | exon | 8247480 | 8247569 | 8247480 | ID=MS.gene31317.t1.exon2;Parent=MS.gene31317.t1 |
| chr2.4 | CDS | 8247480 | 8247569 | 8247480 | ID=cds.MS.gene31317.t1;Parent=MS.gene31317.t1 |
| chr2.4 | exon | 8249892 | 8249957 | 8249892 | ID=MS.gene31317.t1.exon3;Parent=MS.gene31317.t1 |
| chr2.4 | CDS | 8249892 | 8249957 | 8249892 | ID=cds.MS.gene31317.t1;Parent=MS.gene31317.t1 |
| chr2.4 | exon | 8250047 | 8250115 | 8250047 | ID=MS.gene31317.t1.exon4;Parent=MS.gene31317.t1 |
| chr2.4 | CDS | 8250047 | 8250115 | 8250047 | ID=cds.MS.gene31317.t1;Parent=MS.gene31317.t1 |
| chr2.4 | exon | 8250409 | 8250867 | 8250409 | ID=MS.gene31317.t1.exon5;Parent=MS.gene31317.t1 |
| chr2.4 | CDS | 8250409 | 8250867 | 8250409 | ID=cds.MS.gene31317.t1;Parent=MS.gene31317.t1 |
| Gene Sequence |
| Protein sequence |
