Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32795.t1 | XP_013461938.1 | 99.6 | 532 | 2 | 0 | 1 | 532 | 1 | 532 | 1.20E-277 | 965.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32795.t1 | Q9LV21 | 85.6 | 536 | 73 | 1 | 1 | 532 | 1 | 536 | 3.6e-251 | 868.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32795.t1 | A0A072V3N8 | 99.6 | 532 | 2 | 0 | 1 | 532 | 1 | 532 | 8.4e-278 | 965.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32795.t1 | MTR_3g109925 | 99.624 | 532 | 2 | 0 | 1 | 532 | 1 | 532 | 0.0 | 1068 |
| MS.gene32795.t1 | MTR_3g109925 | 85.150 | 532 | 22 | 5 | 1 | 532 | 1 | 475 | 0.0 | 877 |
| MS.gene32795.t1 | MTR_8g105970 | 73.475 | 377 | 40 | 7 | 124 | 495 | 32 | 353 | 0.0 | 517 |
| MS.gene32795.t1 | MTR_3g086330 | 37.094 | 523 | 315 | 8 | 14 | 530 | 17 | 531 | 9.32e-103 | 319 |
| MS.gene32795.t1 | MTR_7g113470 | 35.010 | 517 | 317 | 7 | 20 | 530 | 14 | 517 | 7.57e-90 | 285 |
| MS.gene32795.t1 | MTR_7g067470 | 35.225 | 511 | 312 | 7 | 26 | 530 | 20 | 517 | 4.78e-89 | 283 |
| MS.gene32795.t1 | MTR_8g088270 | 34.286 | 525 | 317 | 9 | 24 | 529 | 19 | 534 | 1.08e-83 | 270 |
| MS.gene32795.t1 | MTR_5g087560 | 32.681 | 511 | 324 | 8 | 28 | 529 | 27 | 526 | 1.64e-78 | 257 |
| MS.gene32795.t1 | MTR_2g013540 | 30.528 | 511 | 344 | 7 | 25 | 530 | 20 | 524 | 1.81e-72 | 241 |
| MS.gene32795.t1 | MTR_6g032870 | 28.571 | 511 | 351 | 5 | 23 | 529 | 20 | 520 | 2.42e-68 | 229 |
| MS.gene32795.t1 | MTR_1g030650 | 27.626 | 514 | 358 | 5 | 23 | 532 | 23 | 526 | 3.98e-68 | 229 |
| MS.gene32795.t1 | MTR_7g406870 | 27.519 | 516 | 347 | 10 | 29 | 529 | 22 | 525 | 3.69e-51 | 183 |
| MS.gene32795.t1 | MTR_2g013540 | 28.534 | 382 | 259 | 8 | 154 | 530 | 3 | 375 | 2.28e-35 | 137 |
| MS.gene32795.t1 | MTR_4g057020 | 57.658 | 111 | 13 | 1 | 294 | 404 | 54 | 130 | 9.12e-29 | 111 |
| MS.gene32795.t1 | MTR_7g406870 | 25.647 | 425 | 289 | 10 | 120 | 529 | 1 | 413 | 4.63e-28 | 116 |
| MS.gene32795.t1 | MTR_8g010750 | 25.122 | 410 | 207 | 12 | 27 | 383 | 30 | 392 | 9.81e-14 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32795.t1 | AT3G18190 | 87.687 | 536 | 62 | 1 | 1 | 532 | 1 | 536 | 0.0 | 962 |
| MS.gene32795.t1 | AT1G24510 | 38.281 | 512 | 303 | 7 | 24 | 530 | 28 | 531 | 1.50e-103 | 321 |
| MS.gene32795.t1 | AT1G24510 | 37.342 | 474 | 284 | 7 | 62 | 530 | 13 | 478 | 1.35e-88 | 281 |
| MS.gene32795.t1 | AT1G24510 | 36.717 | 463 | 280 | 7 | 73 | 530 | 1 | 455 | 6.13e-83 | 265 |
| MS.gene32795.t1 | AT5G20890 | 33.849 | 517 | 323 | 7 | 20 | 530 | 14 | 517 | 2.15e-82 | 266 |
| MS.gene32795.t1 | AT3G20050 | 33.710 | 531 | 324 | 9 | 18 | 529 | 13 | 534 | 8.17e-82 | 265 |
| MS.gene32795.t1 | AT3G11830 | 32.290 | 511 | 326 | 8 | 28 | 529 | 27 | 526 | 1.19e-75 | 249 |
| MS.gene32795.t1 | AT3G11830 | 32.290 | 511 | 324 | 9 | 28 | 529 | 27 | 524 | 6.11e-74 | 244 |
| MS.gene32795.t1 | AT3G03960 | 29.008 | 524 | 356 | 7 | 14 | 532 | 17 | 529 | 3.34e-71 | 237 |
| MS.gene32795.t1 | AT5G26360 | 31.311 | 511 | 340 | 7 | 25 | 530 | 20 | 524 | 6.75e-71 | 237 |
| MS.gene32795.t1 | AT5G16070 | 29.594 | 517 | 324 | 13 | 30 | 520 | 23 | 525 | 3.05e-53 | 189 |
| MS.gene32795.t1 | AT3G02530 | 28.794 | 514 | 333 | 11 | 30 | 520 | 23 | 526 | 1.15e-51 | 185 |
Find 119 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAAGATTGTGAAGATTTC+TGG | 0.204894 | 3.1:-82615297 | MS.gene32795:CDS |
| TGTGAAGATTTCTGGTATTA+AGG | 0.209465 | 3.1:-82615289 | MS.gene32795:CDS |
| TCTTGCTAAAGCTAAGATTT+TGG | 0.234466 | 3.1:-82615457 | MS.gene32795:CDS |
| GATTTCTGGTATTAAGGATA+TGG | 0.239423 | 3.1:-82615283 | MS.gene32795:CDS |
| ATCGTCTTTGCGTTTGTTAT+CGG | 0.257624 | 3.1:+82616337 | None:intergenic |
| AGGGATGATTAAGAAGATTA+AGG | 0.275419 | 3.1:-82615553 | MS.gene32795:CDS |
| GCATTCTCAGCAAGGGTATA+TGG | 0.307049 | 3.1:+82615024 | None:intergenic |
| CTCTGTTCTATATCCGTCTT+AGG | 0.334855 | 3.1:+82615639 | None:intergenic |
| CTTGTGGAAGAGCTTTCTCT+TGG | 0.336541 | 3.1:-82615324 | MS.gene32795:CDS |
| TCACGGAGATCCACCATTTC+CGG | 0.339036 | 3.1:+82615813 | None:intergenic |
| AGCAGCGGAGTCTTGAGATT+TGG | 0.347607 | 3.1:+82616127 | None:intergenic |
| TGTCAAGGCAATTGGGTGCT+TGG | 0.354279 | 3.1:-82615113 | MS.gene32795:CDS |
| ATCGGTGTAGGATTCGGTTT+TGG | 0.362816 | 3.1:+82616355 | None:intergenic |
| TCTCACCGCCATGGCTGTTC+CGG | 0.362983 | 3.1:-82615970 | MS.gene32795:CDS |
| GATAGAGCTGTCAAGGCAAT+TGG | 0.370145 | 3.1:-82615121 | MS.gene32795:CDS |
| TTGTGGAAGAGCTTTCTCTT+GGG | 0.371995 | 3.1:-82615323 | MS.gene32795:CDS |
| ATGATGCTTTGTGTGTTGTT+AGG | 0.372583 | 3.1:-82615191 | MS.gene32795:CDS |
| TTTGTTATCGGTGTAGGATT+CGG | 0.375261 | 3.1:+82616349 | None:intergenic |
| CATACCTTTGGGGCCGAGAC+TGG | 0.392090 | 3.1:+82616262 | None:intergenic |
| AATCTTAGCATTCTCCATTC+TGG | 0.394765 | 3.1:+82615689 | None:intergenic |
| GGAGGATCGGTGAGGGGCTG+CGG | 0.401126 | 3.1:+82616376 | None:intergenic |
| ACCACAACTGTTCTTGTTCG+TGG | 0.413477 | 3.1:-82615255 | MS.gene32795:CDS |
| GTCAAGGCAATTGGGTGCTT+GGG | 0.415529 | 3.1:-82615112 | MS.gene32795:CDS |
| CGATCCCGCTAGGCCGGAAA+TGG | 0.417675 | 3.1:-82615826 | MS.gene32795:CDS |
| AGAACTGAATCAACAGCAAT+AGG | 0.421556 | 3.1:+82615858 | None:intergenic |
| AGCTCAGTAACAATTGCAAT+CGG | 0.423035 | 3.1:+82614991 | None:intergenic |
| TTTGTGTGTTGTTAGGTGTT+TGG | 0.427682 | 3.1:-82615184 | MS.gene32795:CDS |
| AAATGCTCAATATTAGCAAT+AGG | 0.434996 | 3.1:+82615375 | None:intergenic |
| TCACGATCAGTGAGTGCAAC+CGG | 0.437467 | 3.1:+82615951 | None:intergenic |
| ATTTCTGGTATTAAGGATAT+GGG | 0.441434 | 3.1:-82615282 | MS.gene32795:CDS |
| TTTGCGTTTGTTATCGGTGT+AGG | 0.444094 | 3.1:+82616343 | None:intergenic |
| TAGCACTTCGTTGAATAGTA+AGG | 0.456781 | 3.1:-82615910 | MS.gene32795:CDS |
| AACGCCGTTCGCACCAGTCT+CGG | 0.462746 | 3.1:-82616275 | MS.gene32795:CDS |
| TACTGAGCTTGTGAAGGGCT+TGG | 0.463815 | 3.1:-82615751 | MS.gene32795:CDS |
| GTGATTATTCTCAGATGGAT+AGG | 0.464278 | 3.1:-82615605 | MS.gene32795:CDS |
| CAAGACTCCGCTGCTGGTGA+TGG | 0.468281 | 3.1:-82616119 | MS.gene32795:CDS |
| ATTAAGAAGATTAAGGCAAC+CGG | 0.476085 | 3.1:-82615546 | MS.gene32795:CDS |
| GAATGTGGTGCAGCCATTGC+TGG | 0.481414 | 3.1:-82614890 | MS.gene32795:CDS |
| GAAGAGCTTTCTCTTGGGGA+TGG | 0.486289 | 3.1:-82615318 | MS.gene32795:CDS |
| TCCACCATTTCCGGCCTAGC+GGG | 0.488011 | 3.1:+82615822 | None:intergenic |
| GCAATTGGGTGCTTGGGCTA+AGG | 0.488468 | 3.1:-82615106 | MS.gene32795:CDS |
| AGGCAAACAATTAAGAGTCT+TGG | 0.489277 | 3.1:+82615395 | None:intergenic |
| TGTCTCCTCCTTCTCTCTCA+TGG | 0.491398 | 3.1:-82616053 | MS.gene32795:CDS |
| TGTGGAAGAGCTTTCTCTTG+GGG | 0.491536 | 3.1:-82615322 | MS.gene32795:CDS |
| TATACCCTTGCTGAGAATGC+AGG | 0.493053 | 3.1:-82615021 | MS.gene32795:CDS |
| CAGTCTCGGCCCCAAAGGTA+TGG | 0.493521 | 3.1:-82616261 | MS.gene32795:CDS |
| AATCAACAACACATTACAAC+CGG | 0.494792 | 3.1:+82615527 | None:intergenic |
| CTGAGGAATCGTCATGCTAA+AGG | 0.500255 | 3.1:-82614970 | MS.gene32795:CDS |
| AACGGCGTTAGCGACGGAAC+GGG | 0.500736 | 3.1:+82616289 | None:intergenic |
| TGTCATCGATCCCGCTAGGC+CGG | 0.501041 | 3.1:-82615832 | MS.gene32795:CDS |
| TCAAATTTCGCCTCCTAAGA+CGG | 0.506515 | 3.1:-82615652 | MS.gene32795:CDS |
| TCAACACTGGAATCAATGTC+AGG | 0.507995 | 3.1:-82614942 | MS.gene32795:CDS |
| AAATCTCAAGACTCCGCTGC+TGG | 0.512750 | 3.1:-82616125 | MS.gene32795:CDS |
| ATAGAGCTGTCAAGGCAATT+GGG | 0.513984 | 3.1:-82615120 | MS.gene32795:CDS |
| GATTGCAGGTGGTGGTGCTC+CGG | 0.514051 | 3.1:-82615145 | MS.gene32795:CDS |
| TGCCTTGACAGCTCTATCTC+CGG | 0.516484 | 3.1:+82615126 | None:intergenic |
| GTTGGTGATGATAACTTCGT+TGG | 0.525584 | 3.1:+82616217 | None:intergenic |
| GGAACGGGCGGCGATGATGT+TGG | 0.529719 | 3.1:+82616304 | None:intergenic |
| TCCCGCTAGGCCGGAAATGG+TGG | 0.531201 | 3.1:-82615823 | MS.gene32795:CDS |
| AAGAGCTTTCTCTTGGGGAT+GGG | 0.531234 | 3.1:-82615317 | MS.gene32795:CDS |
| AACTTGCATCTTGTTGAGGA+TGG | 0.540091 | 3.1:+82616184 | None:intergenic |
| GGTTAGTGATTATTCTCAGA+TGG | 0.543811 | 3.1:-82615610 | MS.gene32795:CDS |
| ACATTTCTCGAGAAGTGCTC+CGG | 0.552049 | 3.1:+82616073 | None:intergenic |
| CTGTATTCGTGCATTTGCTG+AGG | 0.558420 | 3.1:-82615061 | MS.gene32795:CDS |
| GATGAATACCATGAGAGAGA+AGG | 0.558756 | 3.1:+82616045 | None:intergenic |
| CGGCGATGATGTTGGATTGA+CGG | 0.559941 | 3.1:+82616312 | None:intergenic |
| GATGATAACTTCGTTGGAAG+AGG | 0.560445 | 3.1:+82616223 | None:intergenic |
| GAATACCATGAGAGAGAAGG+AGG | 0.561831 | 3.1:+82616048 | None:intergenic |
| CTCCGGAGATAGAGCTGTCA+AGG | 0.563162 | 3.1:-82615128 | MS.gene32795:CDS |
| GAACGGCGTTAGCGACGGAA+CGG | 0.564350 | 3.1:+82616288 | None:intergenic |
| GGGGCCGAGACTGGTGCGAA+CGG | 0.565754 | 3.1:+82616271 | None:intergenic |
| AAGGTTAGTCATGCTGCTGG+TGG | 0.570337 | 3.1:-82615717 | MS.gene32795:CDS |
| GGCGATGACAACAACGGTGG+TGG | 0.571260 | 3.1:+82616094 | None:intergenic |
| CGCACCAGTCTCGGCCCCAA+AGG | 0.572245 | 3.1:-82616266 | MS.gene32795:CDS |
| CCTCACACACTCTGTTGCCA+AGG | 0.573445 | 3.1:+82614849 | None:intergenic |
| GAGTGCAACCGGAACAGCCA+TGG | 0.575703 | 3.1:+82615962 | None:intergenic |
| GCTCAGTAACAATTGCAATC+GGG | 0.575791 | 3.1:+82614992 | None:intergenic |
| TCTCTGTCATCGATCCCGCT+AGG | 0.576821 | 3.1:-82615836 | MS.gene32795:CDS |
| ACCACCGTTGTTGTCATCGC+CGG | 0.577312 | 3.1:-82616092 | MS.gene32795:CDS |
| GAAGAACTTGCATCTTGTTG+AGG | 0.580248 | 3.1:+82616180 | None:intergenic |
| GGCGTTAGCGACGGAACGGG+CGG | 0.589560 | 3.1:+82616292 | None:intergenic |
| GTTGGGTTATGCTGATCTTG+TGG | 0.590393 | 3.1:-82615340 | MS.gene32795:CDS |
| TGTTCTATATCCGTCTTAGG+AGG | 0.591195 | 3.1:+82615642 | None:intergenic |
| GGTGGTTCCATCACCAGCAG+CGG | 0.591723 | 3.1:+82616112 | None:intergenic |
| GCACTTGTGCTAACCAGCAA+TGG | 0.592202 | 3.1:+82614877 | None:intergenic |
| TCAAACCTGCATTCTCAGCA+AGG | 0.593910 | 3.1:+82615016 | None:intergenic |
| GGTGCGAACGGCGTTAGCGA+CGG | 0.594895 | 3.1:+82616283 | None:intergenic |
| TGATGATACTGAGCTTGTGA+AGG | 0.595971 | 3.1:-82615757 | MS.gene32795:CDS |
| TTAGCATTCTCCATTCTGGT+AGG | 0.596904 | 3.1:+82615693 | None:intergenic |
| ACACTCTGTTGCCAAGGTGA+TGG | 0.598855 | 3.1:+82614855 | None:intergenic |
| TGCTGGTGGACCTACCAGAA+TGG | 0.600235 | 3.1:-82615703 | MS.gene32795:CDS |
| GCTAAAGGTGAGATCAACAC+TGG | 0.604820 | 3.1:-82614955 | MS.gene32795:CDS |
| GAGGATGGTAGCGCCGTCGT+TGG | 0.607730 | 3.1:+82616199 | None:intergenic |
| GATGATACTGAGCTTGTGAA+GGG | 0.610892 | 3.1:-82615756 | MS.gene32795:CDS |
| TTGCAATTGTTACTGAGCTG+AGG | 0.612866 | 3.1:-82614987 | MS.gene32795:CDS |
| GCTGCACCACATTCTCCTCA+AGG | 0.613760 | 3.1:+82614899 | None:intergenic |
| ATGCAAAGACAAATCAGTAA+CGG | 0.617235 | 3.1:+82615482 | None:intergenic |
| TAGCACAAGTGCCATCACCT+TGG | 0.618089 | 3.1:-82614866 | MS.gene32795:CDS |
| TCAAATTACAAACATCCTTG+AGG | 0.621720 | 3.1:-82614914 | MS.gene32795:CDS |
| AAGAAGGTTAGTCATGCTGC+TGG | 0.624743 | 3.1:-82615720 | MS.gene32795:CDS |
| ACTGGAATCAATGTCAGGAA+AGG | 0.625427 | 3.1:-82614937 | MS.gene32795:CDS |
| AGTGAATCAGAGATAACAGT+AGG | 0.627838 | 3.1:+82616023 | None:intergenic |
| AAACATCCTTGAGGAGAATG+TGG | 0.628033 | 3.1:-82614905 | MS.gene32795:CDS |
| TCTTAACAATCTTCACATCA+CGG | 0.628490 | 3.1:+82615796 | None:intergenic |
| TGTTGATGTTCTCACCGCCA+TGG | 0.628840 | 3.1:-82615979 | MS.gene32795:CDS |
| AACATCAACAGCTTTAACAG+AGG | 0.629483 | 3.1:+82615992 | None:intergenic |
| GTGAAGATTGTTAAGAAGCT+CGG | 0.630785 | 3.1:-82615789 | MS.gene32795:CDS |
| TTAGGTGTTTGGTTGCCAAG+AGG | 0.631658 | 3.1:-82615173 | MS.gene32795:CDS |
| TCCACGAACAAGAACAGTTG+TGG | 0.638056 | 3.1:+82615254 | None:intergenic |
| ATCCACCATTTCCGGCCTAG+CGG | 0.644279 | 3.1:+82615821 | None:intergenic |
| CCTTGGCAACAGAGTGTGTG+AGG | 0.652881 | 3.1:-82614849 | MS.gene32795:CDS |
| CAAACCTGCATTCTCAGCAA+GGG | 0.653006 | 3.1:+82615017 | None:intergenic |
| GGATATAGAACAGAGTATTG+TGG | 0.674097 | 3.1:-82615631 | MS.gene32795:CDS |
| TGCAACCGGAACAGCCATGG+CGG | 0.674230 | 3.1:+82615965 | None:intergenic |
| GAAGTTATCATCACCAACGA+CGG | 0.680075 | 3.1:-82616212 | MS.gene32795:CDS |
| AAGATTGTTAAGAAGCTCGG+TGG | 0.695277 | 3.1:-82615786 | MS.gene32795:CDS |
| TGCTCCGGCGATGACAACAA+CGG | 0.714797 | 3.1:+82616088 | None:intergenic |
| TCCGGCGATGACAACAACGG+TGG | 0.732056 | 3.1:+82616091 | None:intergenic |
| TTGATGATATTGTAACTGTG+AGG | 0.759737 | 3.1:-82614813 | MS.gene32795:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAATGCTCAATATTAGCAAT+AGG | + | chr3.1:82615824-82615843 | None:intergenic | 25.0% |
| !!! | ATTTCTGGTATTAAGGATAT+GGG | - | chr3.1:82615914-82615933 | MS.gene32795:CDS | 25.0% |
| AATCAACAACACATTACAAC+CGG | + | chr3.1:82615672-82615691 | None:intergenic | 30.0% | |
| AGGGATGATTAAGAAGATTA+AGG | - | chr3.1:82615643-82615662 | MS.gene32795:CDS | 30.0% | |
| ATGCAAAGACAAATCAGTAA+CGG | + | chr3.1:82615717-82615736 | None:intergenic | 30.0% | |
| ATTAAGAAGATTAAGGCAAC+CGG | - | chr3.1:82615650-82615669 | MS.gene32795:CDS | 30.0% | |
| TCAAATTACAAACATCCTTG+AGG | - | chr3.1:82616282-82616301 | MS.gene32795:CDS | 30.0% | |
| TCTTAACAATCTTCACATCA+CGG | + | chr3.1:82615403-82615422 | None:intergenic | 30.0% | |
| ! | AAGAGAGGAGTTACATTTTA+GGG | - | chr3.1:82615624-82615643 | MS.gene32795:CDS | 30.0% |
| ! | ATCATTTTGTCCATACCTTT+GGG | + | chr3.1:82614948-82614967 | None:intergenic | 30.0% |
| ! | TCTTGCTAAAGCTAAGATTT+TGG | - | chr3.1:82615739-82615758 | MS.gene32795:CDS | 30.0% |
| ! | TTGATGATATTGTAACTGTG+AGG | - | chr3.1:82616383-82616402 | MS.gene32795:CDS | 30.0% |
| !! | GATTTCTGGTATTAAGGATA+TGG | - | chr3.1:82615913-82615932 | MS.gene32795:CDS | 30.0% |
| !! | TGTGAAGATTTCTGGTATTA+AGG | - | chr3.1:82615907-82615926 | MS.gene32795:CDS | 30.0% |
| AATCTTAGCATTCTCCATTC+TGG | + | chr3.1:82615510-82615529 | None:intergenic | 35.0% | |
| AGAACTGAATCAACAGCAAT+AGG | + | chr3.1:82615341-82615360 | None:intergenic | 35.0% | |
| AGCTCAGTAACAATTGCAAT+CGG | + | chr3.1:82616208-82616227 | None:intergenic | 35.0% | |
| AGGCAAACAATTAAGAGTCT+TGG | + | chr3.1:82615804-82615823 | None:intergenic | 35.0% | |
| AGTGAATCAGAGATAACAGT+AGG | + | chr3.1:82615176-82615195 | None:intergenic | 35.0% | |
| GGTTAGTGATTATTCTCAGA+TGG | - | chr3.1:82615586-82615605 | MS.gene32795:CDS | 35.0% | |
| GTGAAGATTGTTAAGAAGCT+CGG | - | chr3.1:82615407-82615426 | MS.gene32795:CDS | 35.0% | |
| GTGATTATTCTCAGATGGAT+AGG | - | chr3.1:82615591-82615610 | MS.gene32795:CDS | 35.0% | |
| TAGCACTTCGTTGAATAGTA+AGG | - | chr3.1:82615286-82615305 | MS.gene32795:CDS | 35.0% | |
| ! | AACATCAACAGCTTTAACAG+AGG | + | chr3.1:82615207-82615226 | None:intergenic | 35.0% |
| ! | ATGATGCTTTGTGTGTTGTT+AGG | - | chr3.1:82616005-82616024 | MS.gene32795:CDS | 35.0% |
| ! | GAAGAGAGGAGTTACATTTT+AGG | - | chr3.1:82615623-82615642 | MS.gene32795:CDS | 35.0% |
| ! | GATCATTTTGTCCATACCTT+TGG | + | chr3.1:82614949-82614968 | None:intergenic | 35.0% |
| ! | TCAGATGGATAGGATTTTGA+AGG | - | chr3.1:82615601-82615620 | MS.gene32795:CDS | 35.0% |
| ! | TCATTTTGTCCATACCTTTG+GGG | + | chr3.1:82614947-82614966 | None:intergenic | 35.0% |
| ! | TTTGTGTGTTGTTAGGTGTT+TGG | - | chr3.1:82616012-82616031 | MS.gene32795:CDS | 35.0% |
| ! | TTTGTTATCGGTGTAGGATT+CGG | + | chr3.1:82614850-82614869 | None:intergenic | 35.0% |
| !! | ATAGGATTTTGAAGGAAGAG+AGG | - | chr3.1:82615609-82615628 | MS.gene32795:CDS | 35.0% |
| !! | ATCGTCTTTGCGTTTGTTAT+CGG | + | chr3.1:82614862-82614881 | None:intergenic | 35.0% |
| !! | GGATATAGAACAGAGTATTG+TGG | - | chr3.1:82615565-82615584 | MS.gene32795:CDS | 35.0% |
| AAACATCCTTGAGGAGAATG+TGG | - | chr3.1:82616291-82616310 | MS.gene32795:CDS | 40.0% | |
| AACTTGCATCTTGTTGAGGA+TGG | + | chr3.1:82615015-82615034 | None:intergenic | 40.0% | |
| AAGATTGTTAAGAAGCTCGG+TGG | - | chr3.1:82615410-82615429 | MS.gene32795:CDS | 40.0% | |
| ACCTGCAATCAAAAACCTCT+TGG | + | chr3.1:82616041-82616060 | None:intergenic | 40.0% | |
| ACTGGAATCAATGTCAGGAA+AGG | - | chr3.1:82616259-82616278 | MS.gene32795:CDS | 40.0% | |
| ATAGAGCTGTCAAGGCAATT+GGG | - | chr3.1:82616076-82616095 | MS.gene32795:CDS | 40.0% | |
| CTCTGTTCTATATCCGTCTT+AGG | + | chr3.1:82615560-82615579 | None:intergenic | 40.0% | |
| GAAGAACTTGCATCTTGTTG+AGG | + | chr3.1:82615019-82615038 | None:intergenic | 40.0% | |
| GAAGTTATCATCACCAACGA+CGG | - | chr3.1:82614984-82615003 | MS.gene32795:CDS | 40.0% | |
| GATGAATACCATGAGAGAGA+AGG | + | chr3.1:82615154-82615173 | None:intergenic | 40.0% | |
| GATGATAACTTCGTTGGAAG+AGG | + | chr3.1:82614976-82614995 | None:intergenic | 40.0% | |
| GATGATACTGAGCTTGTGAA+GGG | - | chr3.1:82615440-82615459 | MS.gene32795:CDS | 40.0% | |
| GCTCAGTAACAATTGCAATC+GGG | + | chr3.1:82616207-82616226 | None:intergenic | 40.0% | |
| GGGAAGATTGTGAAGATTTC+TGG | - | chr3.1:82615899-82615918 | MS.gene32795:CDS | 40.0% | |
| TCAAATTTCGCCTCCTAAGA+CGG | - | chr3.1:82615544-82615563 | MS.gene32795:CDS | 40.0% | |
| TCAACACTGGAATCAATGTC+AGG | - | chr3.1:82616254-82616273 | MS.gene32795:CDS | 40.0% | |
| TGATGATACTGAGCTTGTGA+AGG | - | chr3.1:82615439-82615458 | MS.gene32795:CDS | 40.0% | |
| TGTTCTATATCCGTCTTAGG+AGG | + | chr3.1:82615557-82615576 | None:intergenic | 40.0% | |
| TTAGCATTCTCCATTCTGGT+AGG | + | chr3.1:82615506-82615525 | None:intergenic | 40.0% | |
| TTGCAATTGTTACTGAGCTG+AGG | - | chr3.1:82616209-82616228 | MS.gene32795:CDS | 40.0% | |
| TTGTGGAAGAGCTTTCTCTT+GGG | - | chr3.1:82615873-82615892 | MS.gene32795:CDS | 40.0% | |
| ! | CATTTTCGTGCTGAGAAGTT+GGG | - | chr3.1:82615839-82615858 | MS.gene32795:CDS | 40.0% |
| ! | GAGTTCAACGAGCATTTTAG+CGG | + | chr3.1:82615048-82615067 | None:intergenic | 40.0% |
| !! | AAGAGGTTTTTGATTGCAGG+TGG | - | chr3.1:82616040-82616059 | MS.gene32795:CDS | 40.0% |
| !! | GGGCTTGGTTTTTGATAAGA+AGG | - | chr3.1:82615460-82615479 | MS.gene32795:CDS | 40.0% |
| !! | GTTGGTGATGATAACTTCGT+TGG | + | chr3.1:82614982-82615001 | None:intergenic | 40.0% |
| !! | TTTGCGTTTGTTATCGGTGT+AGG | + | chr3.1:82614856-82614875 | None:intergenic | 40.0% |
| AAGAGCTTTCTCTTGGGGAT+GGG | - | chr3.1:82615879-82615898 | MS.gene32795:CDS | 45.0% | |
| ACCACAACTGTTCTTGTTCG+TGG | - | chr3.1:82615941-82615960 | MS.gene32795:CDS | 45.0% | |
| CAAACCTGCATTCTCAGCAA+GGG | + | chr3.1:82616182-82616201 | None:intergenic | 45.0% | |
| CTGAGGAATCGTCATGCTAA+AGG | - | chr3.1:82616226-82616245 | MS.gene32795:CDS | 45.0% | |
| CTTGTGGAAGAGCTTTCTCT+TGG | - | chr3.1:82615872-82615891 | MS.gene32795:CDS | 45.0% | |
| GAATACCATGAGAGAGAAGG+AGG | + | chr3.1:82615151-82615170 | None:intergenic | 45.0% | |
| GATAGAGCTGTCAAGGCAAT+TGG | - | chr3.1:82616075-82616094 | MS.gene32795:CDS | 45.0% | |
| GCTAAAGGTGAGATCAACAC+TGG | - | chr3.1:82616241-82616260 | MS.gene32795:CDS | 45.0% | |
| GTTGGGTTATGCTGATCTTG+TGG | - | chr3.1:82615856-82615875 | MS.gene32795:CDS | 45.0% | |
| TATACCCTTGCTGAGAATGC+AGG | - | chr3.1:82616175-82616194 | MS.gene32795:CDS | 45.0% | |
| TCAAACCTGCATTCTCAGCA+AGG | + | chr3.1:82616183-82616202 | None:intergenic | 45.0% | |
| TCCACGAACAAGAACAGTTG+TGG | + | chr3.1:82615945-82615964 | None:intergenic | 45.0% | |
| TGTGGAAGAGCTTTCTCTTG+GGG | - | chr3.1:82615874-82615893 | MS.gene32795:CDS | 45.0% | |
| TTAGGTGTTTGGTTGCCAAG+AGG | - | chr3.1:82616023-82616042 | MS.gene32795:CDS | 45.0% | |
| ! | AAGAAGGTTAGTCATGCTGC+TGG | - | chr3.1:82615476-82615495 | MS.gene32795:CDS | 45.0% |
| ! | AAGGTTTTGCATGGGATGGA+GGG | - | chr3.1:82616109-82616128 | MS.gene32795:CDS | 45.0% |
| ! | CTGTATTCGTGCATTTGCTG+AGG | - | chr3.1:82616135-82616154 | MS.gene32795:CDS | 45.0% |
| ! | CTTGGGCTAAGGTTTTGCAT+GGG | - | chr3.1:82616101-82616120 | MS.gene32795:CDS | 45.0% |
| ! | GCATTCTCAGCAAGGGTATA+TGG | + | chr3.1:82616175-82616194 | None:intergenic | 45.0% |
| ! | GCATTTTCGTGCTGAGAAGT+TGG | - | chr3.1:82615838-82615857 | MS.gene32795:CDS | 45.0% |
| ! | TAAGGTTTTGCATGGGATGG+AGG | - | chr3.1:82616108-82616127 | MS.gene32795:CDS | 45.0% |
| !! | ACATTTCTCGAGAAGTGCTC+CGG | + | chr3.1:82615126-82615145 | None:intergenic | 45.0% |
| !! | AGGTTTTTGATTGCAGGTGG+TGG | - | chr3.1:82616043-82616062 | MS.gene32795:CDS | 45.0% |
| !! | ATCGGTGTAGGATTCGGTTT+TGG | + | chr3.1:82614844-82614863 | None:intergenic | 45.0% |
| !! | GCCAAGAGGTTTTTGATTGC+AGG | - | chr3.1:82616037-82616056 | MS.gene32795:CDS | 45.0% |
| !! | TTCAACGAGCATTTTAGCGG+CGG | + | chr3.1:82615045-82615064 | None:intergenic | 45.0% |
| !!! | AGGATTCGGTTTTGGAGGAT+CGG | + | chr3.1:82614836-82614855 | None:intergenic | 45.0% |
| AAATCTCAAGACTCCGCTGC+TGG | - | chr3.1:82615071-82615090 | MS.gene32795:CDS | 50.0% | |
| ACACTCTGTTGCCAAGGTGA+TGG | + | chr3.1:82616344-82616363 | None:intergenic | 50.0% | |
| AGCAGCGGAGTCTTGAGATT+TGG | + | chr3.1:82615072-82615091 | None:intergenic | 50.0% | |
| CGGCGATGATGTTGGATTGA+CGG | + | chr3.1:82614887-82614906 | None:intergenic | 50.0% | |
| GAAGAGCTTTCTCTTGGGGA+TGG | - | chr3.1:82615878-82615897 | MS.gene32795:CDS | 50.0% | |
| GCACTTGTGCTAACCAGCAA+TGG | + | chr3.1:82616322-82616341 | None:intergenic | 50.0% | |
| GTCAAGGCAATTGGGTGCTT+GGG | - | chr3.1:82616084-82616103 | MS.gene32795:CDS | 50.0% | |
| TACTGAGCTTGTGAAGGGCT+TGG | - | chr3.1:82615445-82615464 | MS.gene32795:CDS | 50.0% | |
| TAGCACAAGTGCCATCACCT+TGG | - | chr3.1:82616330-82616349 | MS.gene32795:CDS | 50.0% | |
| TCACGATCAGTGAGTGCAAC+CGG | + | chr3.1:82615248-82615267 | None:intergenic | 50.0% | |
| TCACGGAGATCCACCATTTC+CGG | + | chr3.1:82615386-82615405 | None:intergenic | 50.0% | |
| TGCCTTGACAGCTCTATCTC+CGG | + | chr3.1:82616073-82616092 | None:intergenic | 50.0% | |
| TGTCAAGGCAATTGGGTGCT+TGG | - | chr3.1:82616083-82616102 | MS.gene32795:CDS | 50.0% | |
| TGTCTCCTCCTTCTCTCTCA+TGG | - | chr3.1:82615143-82615162 | MS.gene32795:CDS | 50.0% | |
| TGTTGATGTTCTCACCGCCA+TGG | - | chr3.1:82615217-82615236 | MS.gene32795:CDS | 50.0% | |
| ! | AAGGTTAGTCATGCTGCTGG+TGG | - | chr3.1:82615479-82615498 | MS.gene32795:CDS | 50.0% |
| ! | GCTTGGGCTAAGGTTTTGCA+TGG | - | chr3.1:82616100-82616119 | MS.gene32795:CDS | 50.0% |
| ! | GGCTAAGGTTTTGCATGGGA+TGG | - | chr3.1:82616105-82616124 | MS.gene32795:CDS | 50.0% |
| !! | GGTGTAGGATTCGGTTTTGG+AGG | + | chr3.1:82614841-82614860 | None:intergenic | 50.0% |
| !! | TCAACGAGCATTTTAGCGGC+GGG | + | chr3.1:82615044-82615063 | None:intergenic | 50.0% |
| ACCACCGTTGTTGTCATCGC+CGG | - | chr3.1:82615104-82615123 | MS.gene32795:CDS | 55.0% | |
| ATCCACCATTTCCGGCCTAG+CGG | + | chr3.1:82615378-82615397 | None:intergenic | 55.0% | |
| CCTCACACACTCTGTTGCCA+AGG | + | chr3.1:82616350-82616369 | None:intergenic | 55.0% | |
| CCTTGGCAACAGAGTGTGTG+AGG | - | chr3.1:82616347-82616366 | MS.gene32795:CDS | 55.0% | |
| CTCCGGAGATAGAGCTGTCA+AGG | - | chr3.1:82616068-82616087 | MS.gene32795:CDS | 55.0% | |
| GAATGTGGTGCAGCCATTGC+TGG | - | chr3.1:82616306-82616325 | MS.gene32795:CDS | 55.0% | |
| GCAATTGGGTGCTTGGGCTA+AGG | - | chr3.1:82616090-82616109 | MS.gene32795:CDS | 55.0% | |
| GCTGCACCACATTCTCCTCA+AGG | + | chr3.1:82616300-82616319 | None:intergenic | 55.0% | |
| TCTCTGTCATCGATCCCGCT+AGG | - | chr3.1:82615360-82615379 | MS.gene32795:CDS | 55.0% | |
| TGCTCCGGCGATGACAACAA+CGG | + | chr3.1:82615111-82615130 | None:intergenic | 55.0% | |
| ! | TGCTGGTGGACCTACCAGAA+TGG | - | chr3.1:82615493-82615512 | MS.gene32795:CDS | 55.0% |
| !!! | CGGTTTTGGAGGATCGGTGA+GGG | + | chr3.1:82614830-82614849 | None:intergenic | 55.0% |
| !!! | GGTTTTGGAGGATCGGTGAG+GGG | + | chr3.1:82614829-82614848 | None:intergenic | 55.0% |
| !!! | TCGGTTTTGGAGGATCGGTG+AGG | + | chr3.1:82614831-82614850 | None:intergenic | 55.0% |
| AACGCCGTTCGCACCAGTCT+CGG | - | chr3.1:82614921-82614940 | MS.gene32795:CDS | 60.0% | |
| AACGGCGTTAGCGACGGAAC+GGG | + | chr3.1:82614910-82614929 | None:intergenic | 60.0% | |
| CAAGACTCCGCTGCTGGTGA+TGG | - | chr3.1:82615077-82615096 | MS.gene32795:CDS | 60.0% | |
| CAGTCTCGGCCCCAAAGGTA+TGG | - | chr3.1:82614935-82614954 | MS.gene32795:CDS | 60.0% | |
| GAACGGCGTTAGCGACGGAA+CGG | + | chr3.1:82614911-82614930 | None:intergenic | 60.0% | |
| GAGTGCAACCGGAACAGCCA+TGG | + | chr3.1:82615237-82615256 | None:intergenic | 60.0% | |
| GGCGATGACAACAACGGTGG+TGG | + | chr3.1:82615105-82615124 | None:intergenic | 60.0% | |
| GGTGGTTCCATCACCAGCAG+CGG | + | chr3.1:82615087-82615106 | None:intergenic | 60.0% | |
| TCCACCATTTCCGGCCTAGC+GGG | + | chr3.1:82615377-82615396 | None:intergenic | 60.0% | |
| TCCGGCGATGACAACAACGG+TGG | + | chr3.1:82615108-82615127 | None:intergenic | 60.0% | |
| TCTCACCGCCATGGCTGTTC+CGG | - | chr3.1:82615226-82615245 | MS.gene32795:CDS | 60.0% | |
| TGCAACCGGAACAGCCATGG+CGG | + | chr3.1:82615234-82615253 | None:intergenic | 60.0% | |
| TGTCATCGATCCCGCTAGGC+CGG | - | chr3.1:82615364-82615383 | MS.gene32795:CDS | 60.0% | |
| ! | GATTGCAGGTGGTGGTGCTC+CGG | - | chr3.1:82616051-82616070 | MS.gene32795:CDS | 60.0% |
| !! | CATACCTTTGGGGCCGAGAC+TGG | + | chr3.1:82614937-82614956 | None:intergenic | 60.0% |
| CGATCCCGCTAGGCCGGAAA+TGG | - | chr3.1:82615370-82615389 | MS.gene32795:CDS | 65.0% | |
| GGAACGGGCGGCGATGATGT+TGG | + | chr3.1:82614895-82614914 | None:intergenic | 65.0% | |
| GGTGCGAACGGCGTTAGCGA+CGG | + | chr3.1:82614916-82614935 | None:intergenic | 65.0% | |
| TCCCGCTAGGCCGGAAATGG+TGG | - | chr3.1:82615373-82615392 | MS.gene32795:CDS | 65.0% | |
| ! | GAGGATGGTAGCGCCGTCGT+TGG | + | chr3.1:82615000-82615019 | None:intergenic | 65.0% |
| CGCACCAGTCTCGGCCCCAA+AGG | - | chr3.1:82614930-82614949 | MS.gene32795:CDS | 70.0% | |
| GGAGGATCGGTGAGGGGCTG+CGG | + | chr3.1:82614823-82614842 | None:intergenic | 70.0% | |
| GGCGTTAGCGACGGAACGGG+CGG | + | chr3.1:82614907-82614926 | None:intergenic | 70.0% | |
| GGGGCCGAGACTGGTGCGAA+CGG | + | chr3.1:82614928-82614947 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 82614810 | 82616408 | 82614810 | ID=MS.gene32795 |
| chr3.1 | mRNA | 82614810 | 82616408 | 82614810 | ID=MS.gene32795.t1;Parent=MS.gene32795 |
| chr3.1 | exon | 82614810 | 82616408 | 82614810 | ID=MS.gene32795.t1.exon1;Parent=MS.gene32795.t1 |
| chr3.1 | CDS | 82614810 | 82616408 | 82614810 | ID=cds.MS.gene32795.t1;Parent=MS.gene32795.t1 |
| Gene Sequence |
| Protein sequence |
