AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene32978

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32978.t1 MTR_1g016490 97.175 531 8 1 1 531 1 524 0.0 1063
MS.gene32978.t1 MTR_4g051532 35.739 291 157 7 250 523 217 494 8.19e-48 177
MS.gene32978.t1 MTR_3g112300 38.462 260 150 5 247 500 159 414 2.47e-44 164
MS.gene32978.t1 MTR_3g112300 38.462 260 150 5 247 500 159 414 5.16e-44 164
MS.gene32978.t1 MTR_1g023050 37.548 261 144 5 252 500 172 425 1.27e-43 164
MS.gene32978.t1 MTR_7g106320 43.005 193 96 4 318 500 239 427 6.40e-43 162
MS.gene32978.t1 MTR_8g078480 38.739 222 120 5 306 517 447 662 1.17e-41 160
MS.gene32978.t1 MTR_1g057790 35.915 284 152 5 251 517 162 432 3.86e-41 157
MS.gene32978.t1 MTR_3g112290 36.842 266 146 7 247 500 162 417 8.71e-41 153
MS.gene32978.t1 MTR_5g018860 38.739 222 117 6 306 518 394 605 3.79e-40 155
MS.gene32978.t1 MTR_8g098815 41.899 179 95 4 325 494 254 432 8.47e-39 150
MS.gene32978.t1 MTR_4g019450 31.541 279 167 7 247 522 193 450 5.69e-37 144
MS.gene32978.t1 MTR_7g065050 37.624 202 117 5 329 525 200 397 2.32e-36 142
MS.gene32978.t1 MTR_2g095050 36.923 195 105 3 322 498 312 506 1.56e-33 135
MS.gene32978.t1 MTR_3g112300 34.874 238 145 5 247 478 159 392 1.93e-29 120
MS.gene32978.t1 MTR_3g112300 31.797 217 138 5 247 457 159 371 1.39e-19 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32978.t1 AT4G32980 54.674 353 134 8 155 505 118 446 8.44e-112 340
MS.gene32978.t1 AT4G32980 54.674 353 134 8 155 505 118 446 8.44e-112 340
MS.gene32978.t1 AT2G16400 36.918 279 149 7 247 517 111 370 2.38e-43 160
MS.gene32978.t1 AT2G27220 41.622 185 82 5 324 500 131 297 4.84e-42 156
MS.gene32978.t1 AT2G27220 41.622 185 82 5 324 500 131 297 4.84e-42 156
MS.gene32978.t1 AT1G19700 34.799 273 145 7 247 500 162 420 6.83e-42 158
MS.gene32978.t1 AT1G19700 34.799 273 145 7 247 500 162 420 6.83e-42 158
MS.gene32978.t1 AT1G19700 34.799 273 145 7 247 500 162 420 6.83e-42 158
MS.gene32978.t1 AT1G19700 34.799 273 145 7 247 500 162 420 6.83e-42 158
MS.gene32978.t1 AT1G19700 34.799 273 145 7 247 500 162 420 6.83e-42 158
MS.gene32978.t1 AT4G34610 42.246 187 104 3 318 500 197 383 1.39e-41 157
MS.gene32978.t1 AT4G34610 42.246 187 104 3 318 500 197 383 1.39e-41 157
MS.gene32978.t1 AT4G34610 42.246 187 104 3 318 500 197 383 1.39e-41 157
MS.gene32978.t1 AT4G34610 42.246 187 104 3 318 500 197 383 1.39e-41 157
MS.gene32978.t1 AT1G75410 35.632 261 152 6 247 500 164 415 2.35e-41 156
MS.gene32978.t1 AT1G75410 35.632 261 152 6 247 500 164 415 2.35e-41 156
MS.gene32978.t1 AT2G35940 43.158 190 89 4 318 492 261 446 4.88e-41 157
MS.gene32978.t1 AT2G35940 43.158 190 89 4 318 492 261 446 4.88e-41 157
MS.gene32978.t1 AT2G35940 43.158 190 89 4 318 492 261 446 4.88e-41 157
MS.gene32978.t1 AT2G27220 42.941 170 71 5 339 500 164 315 1.64e-38 147
MS.gene32978.t1 AT1G75430 40.314 191 99 3 323 500 83 271 6.22e-38 141
MS.gene32978.t1 AT4G36870 36.538 208 114 4 305 500 366 567 2.50e-37 147
MS.gene32978.t1 AT4G36870 36.538 208 114 4 305 500 366 567 2.50e-37 147
MS.gene32978.t1 AT2G23760 37.255 204 110 4 307 498 294 491 4.87e-36 142
MS.gene32978.t1 AT2G23760 37.255 204 110 4 307 498 294 491 4.87e-36 142
MS.gene32978.t1 AT2G23760 37.255 204 110 4 307 498 294 491 4.87e-36 142
MS.gene32978.t1 AT5G41410 39.899 198 105 5 319 503 267 463 2.65e-35 140
MS.gene32978.t1 AT2G27990 40.462 173 99 3 328 499 323 492 1.69e-34 137
MS.gene32978.t1 AT5G02030 36.813 182 100 3 332 498 234 415 1.21e-29 123
MS.gene32978.t1 AT2G23760 29.688 256 110 5 307 498 294 543 1.16e-27 117
MS.gene32978.t1 AT1G75410 30.962 239 149 6 247 478 164 393 9.11e-26 109
MS.gene32978.t1 AT4G36870 31.551 187 110 4 305 479 366 546 1.06e-22 102
MS.gene32978.t1 AT4G36870 30.811 185 110 4 305 477 366 544 1.12e-21 99.0
MS.gene32978.t1 AT1G75430 31.081 148 87 3 323 457 83 228 1.48e-13 71.6
MS.gene32978.t1 AT2G27990 32.824 131 84 3 328 457 323 450 1.08e-12 70.5

Find 91 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCGTACATATTCAATAAT+TGG 0.188620 1.1:-5690754 MS.gene32978:CDS
AATGGAATTCCAATACTTTC+TGG 0.223215 1.1:-5690959 MS.gene32978:CDS
ATCTTTCTGGCAAGCCCCTT+TGG 0.227378 1.1:+5689166 None:intergenic
AACCAAAACAACATCATAAA+TGG 0.230798 1.1:-5690977 MS.gene32978:CDS
ATGGAACTTTCTATGAGTTT+AGG 0.232674 1.1:-5690401 MS.gene32978:CDS
TCTTTCTGGCAAGCCCCTTT+GGG 0.243439 1.1:+5689167 None:intergenic
AAATGCTTCTCTGCATCTTT+AGG 0.274049 1.1:+5688859 None:intergenic
TCTTGATGAGATAAACTATT+CGG 0.288114 1.1:-5690276 MS.gene32978:CDS
TTCCATTTATGATGTTGTTT+TGG 0.288436 1.1:+5690975 None:intergenic
TGGAACTTTCTATGAGTTTA+GGG 0.292728 1.1:-5690400 MS.gene32978:CDS
AACGGTTTCTCGACTATATA+AGG 0.297571 1.1:-5689346 MS.gene32978:CDS
CTGTTTCCGTTCTACGTGAT+TGG 0.305984 1.1:-5689143 MS.gene32978:CDS
AACCCTTTGTGTGCAACTTT+TGG 0.309541 1.1:-5690713 MS.gene32978:CDS
TATTCGGGTTCTGGTGTTAG+AGG 0.338538 1.1:-5690260 MS.gene32978:CDS
GAGATAAACTATTCGGGTTC+TGG 0.339602 1.1:-5690269 MS.gene32978:CDS
AAGCTCATTGCTACAATTAG+AGG 0.372015 1.1:+5690541 None:intergenic
ACAAGCCTCATGTAGTAGTA+TGG 0.375487 1.1:-5690420 MS.gene32978:CDS
TTTGATGATTGCCATCCATT+TGG 0.376214 1.1:+5690596 None:intergenic
GAATGGAACAAGATCGGGTT+TGG 0.377735 1.1:-5690444 MS.gene32978:CDS
AAGATACCTTGCTGTAATTC+AGG 0.388861 1.1:-5690336 MS.gene32978:CDS
CTTGCAACATCTCCAACTTC+AGG 0.394246 1.1:-5690509 MS.gene32978:CDS
GGTTTATAAATGCGCGTGTT+CGG 0.404462 1.1:-5688470 MS.gene32978:CDS
CTTGATGAGATAAACTATTC+GGG 0.413238 1.1:-5690275 MS.gene32978:CDS
AGAACGGAAACAGATCTTTC+TGG 0.415143 1.1:+5689153 None:intergenic
TAAATGCGCGTGTTCGGCTA+TGG 0.423300 1.1:-5688464 MS.gene32978:CDS
TTCATTCATTCAAAAGCAAT+GGG 0.425095 1.1:-5689229 MS.gene32978:CDS
TATCTTGATCCTAATATTGC+GGG 0.429149 1.1:+5690353 None:intergenic
GCATACATTTCCTCAATCAA+TGG 0.431572 1.1:+5688438 None:intergenic
AAATGTTTAATATGAATTGA+AGG 0.435021 1.1:-5688335 None:intergenic
CACCAAAAGTTGCACACAAA+GGG 0.441669 1.1:+5690711 None:intergenic
TAGCAAACATATTCTTTCCA+TGG 0.443732 1.1:-5689307 MS.gene32978:CDS
GGGCTCTTCAACAGTTGAAA+AGG 0.453231 1.1:-5689209 MS.gene32978:CDS
CAGTCAATATAGTCAATGTT+TGG 0.454449 1.1:-5689448 MS.gene32978:CDS
TTATTAACAATGAGATTTGA+GGG 0.454533 1.1:+5690833 None:intergenic
TGCACACTTTGCTGTCAAAA+CGG 0.454758 1.1:-5689364 MS.gene32978:CDS
TGAAAAGGAAAGATCAGTTA+TGG 0.458634 1.1:-5689194 MS.gene32978:CDS
GTTATTAACAATGAGATTTG+AGG 0.462088 1.1:+5690832 None:intergenic
CTTCATTCATTCAAAAGCAA+TGG 0.463764 1.1:-5689230 MS.gene32978:CDS
TGTTCTCCACCAGAAAGTAT+TGG 0.466176 1.1:+5690950 None:intergenic
GCAAAGTGTGCATGTATTTG+TGG 0.466187 1.1:+5689375 None:intergenic
AGCATGAATGGAACAAGATC+GGG 0.483225 1.1:-5690449 MS.gene32978:CDS
AAAGCTCAAGAGAGTAATGT+TGG 0.486264 1.1:-5690659 MS.gene32978:CDS
ATTTATTCCTATCCTTCGCT+TGG 0.489525 1.1:+5690205 None:intergenic
TTCATGGTCAGAAGAGGATA+AGG 0.491594 1.1:-5689268 MS.gene32978:CDS
AGCAAACATATTCTTTCCAT+GGG 0.494717 1.1:-5689306 MS.gene32978:CDS
TCAGCATAAGCCTCTGACAT+AGG 0.495314 1.1:+5690170 None:intergenic
ACTGTTAAAATTTGATCCCA+TGG 0.497477 1.1:+5689290 None:intergenic
GACTTAACTCATAGCATGAA+TGG 0.499550 1.1:-5690461 MS.gene32978:CDS
ATGAGAGCAGTGAAAGAAGC+AGG 0.499804 1.1:-5688374 MS.gene32978:CDS
TCTGAGCATTGACCTGAAGT+TGG 0.501236 1.1:+5690497 None:intergenic
ATAGGGAACATCGGTCCAAA+TGG 0.503828 1.1:-5690611 MS.gene32978:CDS
GGTTCTGGTGTTAGAGGCCG+AGG 0.503924 1.1:-5690254 MS.gene32978:CDS
TGGTTGTGTAGGTATCAAAC+TGG 0.504145 1.1:-5688491 MS.gene32978:intron
AAGTGGGTTGACTAGAAGTC+AGG 0.504398 1.1:-5688824 MS.gene32978:intron
AACAAATGAATTATCAGCTA+TGG 0.505083 1.1:+5690889 None:intergenic
TCTTGAAGACCAATTCTAGC+AGG 0.505334 1.1:+5690794 None:intergenic
AGAAAAGCTTGTCGAAATGA+AGG 0.508701 1.1:-5688402 MS.gene32978:CDS
ATCAGTTATGGAGGCCCCAA+AGG 0.509828 1.1:-5689182 MS.gene32978:CDS
CTTTCTGGCAAGCCCCTTTG+GGG 0.514861 1.1:+5689168 None:intergenic
TCAGTTATGGAGGCCCCAAA+GGG 0.515348 1.1:-5689181 MS.gene32978:CDS
TAGCATGAATGGAACAAGAT+CGG 0.530199 1.1:-5690450 MS.gene32978:CDS
ACAAAGTTGATTTATTTCCT+CGG 0.530630 1.1:+5690237 None:intergenic
TGCCAATTATTGAATATGTA+CGG 0.533743 1.1:+5690752 None:intergenic
ATGCTGATTCTTCATTGCAA+AGG 0.542693 1.1:-5690154 MS.gene32978:CDS
TCATGTCATATTCGCCGATA+GGG 0.549107 1.1:-5690628 MS.gene32978:CDS
GCTATGGAAACCATTGATTG+AGG 0.555071 1.1:-5688448 MS.gene32978:CDS
GTATCTTGATCCTAATATTG+CGG 0.575599 1.1:+5690352 None:intergenic
TAACAGTTCATGGTCAGAAG+AGG 0.576067 1.1:-5689274 MS.gene32978:CDS
GGAACATCGGTCCAAATGGA+TGG 0.576190 1.1:-5690607 MS.gene32978:CDS
GGAATTCCAATACTTTCTGG+TGG 0.576914 1.1:-5690956 MS.gene32978:CDS
ACTCTTGATGCTTCTACAGA+TGG 0.577737 1.1:-5690105 MS.gene32978:intron
ACTGCTCAAATGAACATGGC+TGG 0.584941 1.1:-5691079 MS.gene32978:CDS
AACACAACCAAGCGAAGGAT+AGG 0.588145 1.1:-5690212 MS.gene32978:CDS
TTGTTACATCACAACATGGA+AGG 0.589701 1.1:-5690871 MS.gene32978:CDS
AATGAATAGCAATGAATGAG+TGG 0.594918 1.1:+5691010 None:intergenic
AAACATCCAATCACGTAGAA+CGG 0.600137 1.1:+5689137 None:intergenic
TCACCAAAAGTTGCACACAA+AGG 0.603199 1.1:+5690710 None:intergenic
ACAACATGGAAGGACTATTG+TGG 0.614360 1.1:-5690861 MS.gene32978:CDS
TTTGGACCGATGTTCCCTAT+CGG 0.616890 1.1:+5690614 None:intergenic
TAGATAATACTTACGGATGG+AGG 0.617974 1.1:+5689106 None:intergenic
TATATAAGGACTTGAGAGAG+AGG 0.620065 1.1:-5689332 MS.gene32978:CDS
AAGTTCCATACTACTACATG+AGG 0.620943 1.1:+5690415 None:intergenic
TTCATGTCATATTCGCCGAT+AGG 0.623576 1.1:-5690629 MS.gene32978:CDS
CGATGAGAGTCCTATGTCAG+AGG 0.633802 1.1:-5690180 MS.gene32978:CDS
TCATTTGTTACATCACAACA+TGG 0.664816 1.1:-5690875 MS.gene32978:CDS
AAAGGAAAGATCAGTTATGG+AGG 0.667219 1.1:-5689191 MS.gene32978:CDS
TGTCGAACACAACCAAGCGA+AGG 0.672572 1.1:-5690217 MS.gene32978:CDS
GTACACTGCTCAAATGAACA+TGG 0.673477 1.1:-5691083 MS.gene32978:CDS
GTATTTCCTGAATTACAGCA+AGG 0.683112 1.1:+5690330 None:intergenic
TATTCGCCGATAGGGAACAT+CGG 0.714269 1.1:-5690620 MS.gene32978:CDS
CAGTTATGGAGGCCCCAAAG+GGG 0.731077 1.1:-5689180 MS.gene32978:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATCTTATTATTATAGATAA+AGG + chr1.1:5690507-5690526 None:intergenic 15.0%
!! TGAATTTAATGTAATCTAAA+TGG + chr1.1:5689367-5689386 None:intergenic 15.0%
!!! TAACCAAAGTTTTAATATAA+AGG - chr1.1:5690364-5690383 MS.gene32978:CDS 15.0%
!!! TAATAACTTTTATACGATAA+GGG + chr1.1:5690882-5690901 None:intergenic 15.0%
!!! TTAATAACTTTTATACGATA+AGG + chr1.1:5690883-5690902 None:intergenic 15.0%
!! AGACCTTTATATTAAAACTT+TGG + chr1.1:5690370-5690389 None:intergenic 20.0%
!! AGTGATTAGAGTTATATTTA+TGG - chr1.1:5690920-5690939 MS.gene32978:CDS 20.0%
!! ATTAGAGTTATATTTATGGT+TGG - chr1.1:5690924-5690943 MS.gene32978:CDS 20.0%
!! ATTTACTTGCAATAAAAAGT+GGG - chr1.1:5690595-5690614 MS.gene32978:CDS 20.0%
!! TCGATTATAGATAATACTTA+CGG + chr1.1:5690339-5690358 None:intergenic 20.0%
!! TTATTAACAATGAGATTTGA+GGG + chr1.1:5688605-5688624 None:intergenic 20.0%
!! TTTCAACTGATAAATAATCT+TGG + chr1.1:5690780-5690799 None:intergenic 20.0%
!!! ACTTTTCCAAGTAAAATTTA+TGG - chr1.1:5689743-5689762 MS.gene32978:intron 20.0%
!!! CATGTAAATTGATTTATGTT+TGG + chr1.1:5689619-5689638 None:intergenic 20.0%
!!! TTAAAACTGATTTTGGTATT+TGG - chr1.1:5690723-5690742 MS.gene32978:CDS 20.0%
! AACAAATGAATTATCAGCTA+TGG + chr1.1:5688549-5688568 None:intergenic 25.0%
! AACCAAAACAACATCATAAA+TGG - chr1.1:5688458-5688477 MS.gene32978:CDS 25.0%
! ATTTATCAGTTGAAAACATG+TGG - chr1.1:5690785-5690804 MS.gene32978:CDS 25.0%
! CATTTACTTGCAATAAAAAG+TGG - chr1.1:5690594-5690613 MS.gene32978:CDS 25.0%
! GTTATTAACAATGAGATTTG+AGG + chr1.1:5688606-5688625 None:intergenic 25.0%
! TCTTGATGAGATAAACTATT+CGG - chr1.1:5689159-5689178 MS.gene32978:CDS 25.0%
! TGCCAATTATTGAATATGTA+CGG + chr1.1:5688686-5688705 None:intergenic 25.0%
! TTATAGATAATACTTACGGA+TGG + chr1.1:5690335-5690354 None:intergenic 25.0%
! TTCATTCATTCAAAAGCAAT+GGG - chr1.1:5690206-5690225 MS.gene32978:CDS 25.0%
! TTCCAAGTAAAATTTATGGA+TGG - chr1.1:5689747-5689766 MS.gene32978:intron 25.0%
! TTCCGTACATATTCAATAAT+TGG - chr1.1:5688681-5688700 MS.gene32978:intron 25.0%
! TTGATTTCTGATGTTTAGAA+TGG - chr1.1:5689465-5689484 MS.gene32978:intron 25.0%
!! AACCATCCATAAATTTTACT+TGG + chr1.1:5689752-5689771 None:intergenic 25.0%
!! ACAAAGTTGATTTATTTCCT+CGG + chr1.1:5689201-5689220 None:intergenic 25.0%
!!! AGAATGGATTTTGACATTTT+TGG - chr1.1:5689481-5689500 MS.gene32978:intron 25.0%
!!! GATCAAATTTTAACAGTTCA+TGG - chr1.1:5690151-5690170 MS.gene32978:CDS 25.0%
!!! GTCACATACATATTTTGATT+CGG - chr1.1:5690643-5690662 MS.gene32978:CDS 25.0%
!!! TAGTAGTCTTTATTTTACTC+AGG - chr1.1:5689960-5689979 MS.gene32978:intron 25.0%
!!! TTCCATTTATGATGTTGTTT+TGG + chr1.1:5688463-5688482 None:intergenic 25.0%
AAACATACACTAATTCGATC+AGG + chr1.1:5689417-5689436 None:intergenic 30.0%
AATGAATAGCAATGAATGAG+TGG + chr1.1:5688428-5688447 None:intergenic 30.0%
AATGGAATTCCAATACTTTC+TGG - chr1.1:5688476-5688495 MS.gene32978:CDS 30.0%
ACTGTTAAAATTTGATCCCA+TGG + chr1.1:5690148-5690167 None:intergenic 30.0%
AGCAAACATATTCTTTCCAT+GGG - chr1.1:5690129-5690148 MS.gene32978:CDS 30.0%
AGGCTAAAAATCAATTGTAG+AGG + chr1.1:5689559-5689578 None:intergenic 30.0%
ATGGAACTTTCTATGAGTTT+AGG - chr1.1:5689034-5689053 MS.gene32978:intron 30.0%
CAAGGATTAAGTAATGTCTA+CGG + chr1.1:5690821-5690840 None:intergenic 30.0%
CAGTCAATATAGTCAATGTT+TGG - chr1.1:5689987-5690006 MS.gene32978:intron 30.0%
CTTCATTCATTCAAAAGCAA+TGG - chr1.1:5690205-5690224 MS.gene32978:CDS 30.0%
CTTGATGAGATAAACTATTC+GGG - chr1.1:5689160-5689179 MS.gene32978:CDS 30.0%
GATAAAAAACCTTGATACTG+TGG + chr1.1:5690409-5690428 None:intergenic 30.0%
GCAAATTGTATGATGTTGAA+TGG - chr1.1:5689810-5689829 MS.gene32978:intron 30.0%
GTATCTTGATCCTAATATTG+CGG + chr1.1:5689086-5689105 None:intergenic 30.0%
TAGCAAACATATTCTTTCCA+TGG - chr1.1:5690128-5690147 MS.gene32978:CDS 30.0%
TATCTTGATCCTAATATTGC+GGG + chr1.1:5689085-5689104 None:intergenic 30.0%
TGAAAAGGAAAGATCAGTTA+TGG - chr1.1:5690241-5690260 MS.gene32978:CDS 30.0%
TGGAACTTTCTATGAGTTTA+GGG - chr1.1:5689035-5689054 MS.gene32978:intron 30.0%
TTGATTGAGCGATAAATTCA+AGG + chr1.1:5689579-5689598 None:intergenic 30.0%
! AAGTGAACAATTTTGCATCT+AGG + chr1.1:5689714-5689733 None:intergenic 30.0%
! ATATTTATGGTTGGTTGTGT+AGG - chr1.1:5690933-5690952 MS.gene32978:CDS 30.0%
! CCTGACTATTAATTTGGAAT+CGG + chr1.1:5690693-5690712 None:intergenic 30.0%
! GATAAGGGCTACATTTTTAA+TGG + chr1.1:5690867-5690886 None:intergenic 30.0%
! GTCATTAATTTGAGATCGAA+TGG + chr1.1:5690758-5690777 None:intergenic 30.0%
! TCATTTGTTACATCACAACA+TGG - chr1.1:5688560-5688579 MS.gene32978:intron 30.0%
! TCGAATTAGTGTATGTTTTC+TGG - chr1.1:5689419-5689438 MS.gene32978:CDS 30.0%
!!! TAGTCTTTATTTTACTCAGG+TGG - chr1.1:5689963-5689982 MS.gene32978:intron 30.0%
!!! TGATGTTGTTTTGGTTGTTA+AGG + chr1.1:5688454-5688473 None:intergenic 30.0%
AAACATCCAATCACGTAGAA+CGG + chr1.1:5690301-5690320 None:intergenic 35.0%
AAAGCTCAAGAGAGTAATGT+TGG - chr1.1:5688776-5688795 MS.gene32978:intron 35.0%
AAAGGAAAGATCAGTTATGG+AGG - chr1.1:5690244-5690263 MS.gene32978:CDS 35.0%
AAATGCTTCTCTGCATCTTT+AGG + chr1.1:5690579-5690598 None:intergenic 35.0%
AACGGTTTCTCGACTATATA+AGG - chr1.1:5690089-5690108 MS.gene32978:intron 35.0%
AAGCTCATTGCTACAATTAG+AGG + chr1.1:5688897-5688916 None:intergenic 35.0%
AAGTTACACACAAGGATCAA+AGG - chr1.1:5689880-5689899 MS.gene32978:intron 35.0%
AAGTTCCATACTACTACATG+AGG + chr1.1:5689023-5689042 None:intergenic 35.0%
AATTCGATCAGGACTATGAA+CGG + chr1.1:5689406-5689425 None:intergenic 35.0%
ACAATGATGTGATGCATTTC+AGG - chr1.1:5690550-5690569 MS.gene32978:CDS 35.0%
ACATTCCAAAGTTACACACA+AGG - chr1.1:5689872-5689891 MS.gene32978:intron 35.0%
AGAAAAGCTTGTCGAAATGA+AGG - chr1.1:5691033-5691052 MS.gene32978:CDS 35.0%
AGATCATTGATGAATGCATG+TGG - chr1.1:5690522-5690541 MS.gene32978:CDS 35.0%
ATTAATAGTCAGGTCAGGAT+CGG - chr1.1:5690700-5690719 MS.gene32978:CDS 35.0%
ATTTATTCCTATCCTTCGCT+TGG + chr1.1:5689233-5689252 None:intergenic 35.0%
CCGATTCCAAATTAATAGTC+AGG - chr1.1:5690690-5690709 MS.gene32978:CDS 35.0%
GACTTAACTCATAGCATGAA+TGG - chr1.1:5688974-5688993 MS.gene32978:intron 35.0%
GCATACATTTCCTCAATCAA+TGG + chr1.1:5691000-5691019 None:intergenic 35.0%
GTATTTCCTGAATTACAGCA+AGG + chr1.1:5689108-5689127 None:intergenic 35.0%
TAGATAATACTTACGGATGG+AGG + chr1.1:5690332-5690351 None:intergenic 35.0%
TAGCATGAATGGAACAAGAT+CGG - chr1.1:5688985-5689004 MS.gene32978:intron 35.0%
TATATAAGGACTTGAGAGAG+AGG - chr1.1:5690103-5690122 MS.gene32978:intron 35.0%
TCCAAATTAATAGTCAGGTC+AGG - chr1.1:5690695-5690714 MS.gene32978:CDS 35.0%
TCCTGACCTGACTATTAATT+TGG + chr1.1:5690699-5690718 None:intergenic 35.0%
TTAAGTAATGTCTACGGATC+CGG + chr1.1:5690815-5690834 None:intergenic 35.0%
TTGATCCTTGTGTGTAACTT+TGG + chr1.1:5689880-5689899 None:intergenic 35.0%
TTGTTACATCACAACATGGA+AGG - chr1.1:5688564-5688583 MS.gene32978:intron 35.0%
TTTACATGCAACACACTCTT+AGG - chr1.1:5689631-5689650 MS.gene32978:intron 35.0%
! AAATTTTCGCCCGCAATATT+AGG - chr1.1:5689073-5689092 MS.gene32978:intron 35.0%
! AAGATACCTTGCTGTAATTC+AGG - chr1.1:5689099-5689118 MS.gene32978:intron 35.0%
! GTTGAAAACATGTGGTTTTC+CGG - chr1.1:5690793-5690812 MS.gene32978:CDS 35.0%
! TCTGGTTTCATTCTTGAACA+TGG - chr1.1:5689437-5689456 MS.gene32978:CDS 35.0%
! TTTGATGATTGCCATCCATT+TGG + chr1.1:5688842-5688861 None:intergenic 35.0%
! TTTTCAGTTCCTGCTAGAAT+TGG - chr1.1:5688632-5688651 MS.gene32978:intron 35.0%
!! ATGCTGATTCTTCATTGCAA+AGG - chr1.1:5689281-5689300 MS.gene32978:CDS 35.0%
!! GGATCGGTTAAAACTGATTT+TGG - chr1.1:5690716-5690735 MS.gene32978:CDS 35.0%
!!! AGGTTTTTTATCCCCAATTC+CGG - chr1.1:5690417-5690436 MS.gene32978:CDS 35.0%
!!! TAATCCTTGCTTGTTTTGAG+AGG - chr1.1:5690832-5690851 MS.gene32978:CDS 35.0%
ACAACATGGAAGGACTATTG+TGG - chr1.1:5688574-5688593 MS.gene32978:intron 40.0%
ACAAGCCTCATGTAGTAGTA+TGG - chr1.1:5689015-5689034 MS.gene32978:intron 40.0%
ACTCTTGATGCTTCTACAGA+TGG - chr1.1:5689330-5689349 MS.gene32978:CDS 40.0%
AGAACGGAAACAGATCTTTC+TGG + chr1.1:5690285-5690304 None:intergenic 40.0%
AGCATGAATGGAACAAGATC+GGG - chr1.1:5688986-5689005 MS.gene32978:intron 40.0%
AGTTCCTCTCAAAACAAGCA+AGG + chr1.1:5690839-5690858 None:intergenic 40.0%
CACCAAAAGTTGCACACAAA+GGG + chr1.1:5688727-5688746 None:intergenic 40.0%
GCAAAGTGTGCATGTATTTG+TGG + chr1.1:5690063-5690082 None:intergenic 40.0%
GGAATTCCAATACTTTCTGG+TGG - chr1.1:5688479-5688498 MS.gene32978:CDS 40.0%
GGTTTATAAATGCGCGTGTT+CGG - chr1.1:5690965-5690984 MS.gene32978:CDS 40.0%
GTACACTGCTCAAATGAACA+TGG - chr1.1:5688352-5688371 MS.gene32978:CDS 40.0%
TAACAGTTCATGGTCAGAAG+AGG - chr1.1:5690161-5690180 MS.gene32978:CDS 40.0%
TCACCAAAAGTTGCACACAA+AGG + chr1.1:5688728-5688747 None:intergenic 40.0%
TCATGTCATATTCGCCGATA+GGG - chr1.1:5688807-5688826 MS.gene32978:intron 40.0%
TCTTGAAGACCAATTCTAGC+AGG + chr1.1:5688644-5688663 None:intergenic 40.0%
TGGTTGTGTAGGTATCAAAC+TGG - chr1.1:5690944-5690963 MS.gene32978:CDS 40.0%
TTCATGGTCAGAAGAGGATA+AGG - chr1.1:5690167-5690186 MS.gene32978:CDS 40.0%
TTCATGTCATATTCGCCGAT+AGG - chr1.1:5688806-5688825 MS.gene32978:intron 40.0%
! AACCCTTTGTGTGCAACTTT+TGG - chr1.1:5688722-5688741 MS.gene32978:intron 40.0%
! GAGATAAACTATTCGGGTTC+TGG - chr1.1:5689166-5689185 MS.gene32978:CDS 40.0%
! GCTATGGAAACCATTGATTG+AGG - chr1.1:5690987-5691006 MS.gene32978:CDS 40.0%
! TGCACACTTTGCTGTCAAAA+CGG - chr1.1:5690071-5690090 MS.gene32978:intron 40.0%
! TGTTCTCCACCAGAAAGTAT+TGG + chr1.1:5688488-5688507 None:intergenic 40.0%
AACACAACCAAGCGAAGGAT+AGG - chr1.1:5689223-5689242 MS.gene32978:CDS 45.0%
ACTGCTCAAATGAACATGGC+TGG - chr1.1:5688356-5688375 MS.gene32978:CDS 45.0%
ATAGGGAACATCGGTCCAAA+TGG - chr1.1:5688824-5688843 MS.gene32978:intron 45.0%
ATGAGAGCAGTGAAAGAAGC+AGG - chr1.1:5691061-5691080 MS.gene32978:CDS 45.0%
CTGTTTCCGTTCTACGTGAT+TGG - chr1.1:5690292-5690311 MS.gene32978:CDS 45.0%
CTTGCAACATCTCCAACTTC+AGG - chr1.1:5688926-5688945 MS.gene32978:intron 45.0%
GAATGGAACAAGATCGGGTT+TGG - chr1.1:5688991-5689010 MS.gene32978:intron 45.0%
GGGCTCTTCAACAGTTGAAA+AGG - chr1.1:5690226-5690245 MS.gene32978:CDS 45.0%
TATTCGCCGATAGGGAACAT+CGG - chr1.1:5688815-5688834 MS.gene32978:intron 45.0%
TCAGCATAAGCCTCTGACAT+AGG + chr1.1:5689268-5689287 None:intergenic 45.0%
TTTGGACCGATGTTCCCTAT+CGG + chr1.1:5688824-5688843 None:intergenic 45.0%
! TATTCGGGTTCTGGTGTTAG+AGG - chr1.1:5689175-5689194 MS.gene32978:CDS 45.0%
!! AAGTGGGTTGACTAGAAGTC+AGG - chr1.1:5690611-5690630 MS.gene32978:CDS 45.0%
!! TCTGAGCATTGACCTGAAGT+TGG + chr1.1:5688941-5688960 None:intergenic 45.0%
ATCAGTTATGGAGGCCCCAA+AGG - chr1.1:5690253-5690272 MS.gene32978:CDS 50.0%
CGATGAGAGTCCTATGTCAG+AGG - chr1.1:5689255-5689274 MS.gene32978:CDS 50.0%
CGATTGCAGCCACAGTATCA+AGG - chr1.1:5690397-5690416 MS.gene32978:CDS 50.0%
GGAACATCGGTCCAAATGGA+TGG - chr1.1:5688828-5688847 MS.gene32978:CDS 50.0%
TAAATGCGCGTGTTCGGCTA+TGG - chr1.1:5690971-5690990 MS.gene32978:CDS 50.0%
TCAGTTATGGAGGCCCCAAA+GGG - chr1.1:5690254-5690273 MS.gene32978:CDS 50.0%
TGTCGAACACAACCAAGCGA+AGG - chr1.1:5689218-5689237 MS.gene32978:CDS 50.0%
! ATCTTTCTGGCAAGCCCCTT+TGG + chr1.1:5690272-5690291 None:intergenic 50.0%
! TCTTTCTGGCAAGCCCCTTT+GGG + chr1.1:5690271-5690290 None:intergenic 50.0%
AGCTGATGCAGCCGGAATTG+GGG + chr1.1:5690431-5690450 None:intergenic 55.0%
CAGCTGATGCAGCCGGAATT+GGG + chr1.1:5690432-5690451 None:intergenic 55.0%
CAGTTATGGAGGCCCCAAAG+GGG - chr1.1:5690255-5690274 MS.gene32978:CDS 55.0%
CGAAATGCAGCTGATGCAGC+CGG + chr1.1:5690439-5690458 None:intergenic 55.0%
! CTTTCTGGCAAGCCCCTTTG+GGG + chr1.1:5690270-5690289 None:intergenic 55.0%
GCAGCTGATGCAGCCGGAAT+TGG + chr1.1:5690433-5690452 None:intergenic 60.0%
! GGTTCTGGTGTTAGAGGCCG+AGG - chr1.1:5689181-5689200 MS.gene32978:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 5688338 5691119 5688338 ID=MS.gene32978
chr1.1 mRNA 5688338 5691119 5688338 ID=MS.gene32978.t1;Parent=MS.gene32978
chr1.1 exon 5690106 5691119 5690106 ID=MS.gene32978.t1.exon1;Parent=MS.gene32978.t1
chr1.1 CDS 5690106 5691119 5690106 ID=cds.MS.gene32978.t1;Parent=MS.gene32978.t1
chr1.1 exon 5689120 5689475 5689120 ID=MS.gene32978.t1.exon2;Parent=MS.gene32978.t1
chr1.1 CDS 5689120 5689475 5689120 ID=cds.MS.gene32978.t1;Parent=MS.gene32978.t1
chr1.1 exon 5688825 5688885 5688825 ID=MS.gene32978.t1.exon3;Parent=MS.gene32978.t1
chr1.1 CDS 5688825 5688885 5688825 ID=cds.MS.gene32978.t1;Parent=MS.gene32978.t1
chr1.1 exon 5688338 5688502 5688338 ID=MS.gene32978.t1.exon4;Parent=MS.gene32978.t1
chr1.1 CDS 5688338 5688502 5688338 ID=cds.MS.gene32978.t1;Parent=MS.gene32978.t1
Gene Sequence

>MS.gene32978

ATGGAGAATGATGTGTACACTGCTCAAATGAACATGGCTGGTCAAGTTTCAAATATAGAAGATATCACACAACATCTAACACAAAAGCCACTCATTCATTGCTATTCATTTGACCTTAACAACCAAAACAACATCATAAATGGAATTCCAATACTTTCTGGTGGAGAACAAGATCAACATGTTGATGCTAGTTTCATGAATCAAGTTACCATAGCTGATAATTCATTTGTTACATCACAACATGGAAGGACTATTGTGGAAAATCCCTCAAATCTCATTGTTAATAACAATGACTTTTCAGTTCCTGCTAGAATTGGTCTTCAAGAAAATTTAGAAGCAATAGTTCCGTACATATTCAATAATTGGCATGATACTTCAAACTCAAACCCTTTGTGTGCAACTTTTGGTGATAATAATAGCTATGTTAACAAGTTTTTGAAAGCTCAAGAGAGTAATGTTGGAACTGAGTTCATGTCATATTCGCCGATAGGGAACATCGGTCCAAATGGATGGCAATCATCAAATGTTGCTAACTTAACAAATCTTGCTTATAGTTCCTCTAATTGTAGCAATGAGCTTTCACTAAGTCTTGCAACATCTCCAACTTCAGGTCAATGCTCAGAGATTAGTTGTTCTGACTTAACTCATAGCATGAATGGAACAAGATCGGGTTTGGAACAAGCCTCATGTAGTAGTATGGAACTTTCTATGAGTTTAGGGAATGATAAACATGTCAAATTTTCGCCCGCAATATTAGGATCAAGATACCTTGCTGTAATTCAGGAAATACTTGTTCAAATTGCAACATATTCATTTGAAAATCTTGATGAGATAAACTATTCGGGTTCTGGTGTTAGAGGCCGAGGAAATAAATCAACTTTGTCGAACACAACCAAGCGAAGGATAGGAATAAATCGCGATGAGAGTCCTATGTCAGAGGCTTATGCTGATTCTTCATTGCAAAGGCATGCTGTTGAATCAAAGCAATCTCAACTCTTGATGCTTCTACAGATGGTACATTGCTAACCATTTAGATTACATTAAATTCATTTGATTTTCGTAAAGCCGTTCATAGTCCTGATCGAATTAGTGTATGTTTTCTGGTTTCATTCTTGAACATGGAAAAATTGATTTCTGATGTTTAGAATGGATTTTGACATTTTTGGATGTTTGTTTTCTAGTAGAGTTGATACTTTGAGCTAGAATTTTGAGCTTTTGCCTCTACAATTGATTTTTAGCCTTGAATTTATCGCTCAATCAACTTTTACATGAATCTATCCAAACATAAATCAATTTACATGCAACACACTCTTAGGCAGAATCAAATTTACTGAAATCAAATCAAAATTAATTTTTGTAATTGTAGAAGCAAACCTAGATGCAAAATTGTTCACTTTGCAATTTCACTTTTCCAAGTAAAATTTATGGATGGTTGAAAGTTCTTATACTAGTTCAGAACAAAACTTTGAAAAGCAAATTGTATGATGTTGAATGGTACTCTATGAACAGTTGTTATTTGAACATCAAAATAACTACATTCCAAAGTTACACACAAGGATCAAAGGAAATTTTGATGTTCGAAAATTATTTCTCTATATGAAAATTTTGTTCAAAAATGCTGATAGTAGTCTTTATTTTACTCAGGTGGACAGTCAATATAGTCAATGTTTGGATGAGATTCACACTGTCGTATCAGCATTTCATGCTGCTACTGAGCTCGATCCACAAATACATGCACACTTTGCTGTCAAAACGGTTTCTCGACTATATAAGGACTTGAGAGAGAGGATTAGCAAACATATTCTTTCCATGGGATCAAATTTTAACAGTTCATGGTCAGAAGAGGATAAGGAATTGTCTGTTGAAACTTCATTCATTCAAAAGCAATGGGCTCTTCAACAGTTGAAAAGGAAAGATCAGTTATGGAGGCCCCAAAGGGGCTTGCCAGAAAGATCTGTTTCCGTTCTACGTGATTGGATGTTTCAGAATTTCCTCCATCCGTAAGTATTATCTATAATCGAACATATAACCAAAGTTTTAATATAAAGGTCTTCAACTGCGATTGCAGCCACAGTATCAAGGTTTTTTATCCCCAATTCCGGCTGCATCAGCTGCATTTCGCTACATCATCAATGATTGCGATGCAACTGCGACTGCAATTTAGAACCTTTATCTATAATAATAAGATCATTGATGAATGCATGTGGATTTAACAATGATGTGATGCATTTCAGGTATCCTAAAGATGCAGAGAAGCATTTACTTGCAATAAAAAGTGGGTTGACTAGAAGTCAGGTATGCTATTGTCACATACATATTTTGATTCGGTGTAGTAACTACGCTACGCAGTTTCCGATTCCAAATTAATAGTCAGGTCAGGATCGGTTAAAACTGATTTTGGTATTTGGTAATCTAAACCATTCGATCTCAAATTAATGACCAAGATTATTTATCAGTTGAAAACATGTGGTTTTCCGGATCCGTAGACATTACTTAATCCTTGCTTGTTTTGAGAGGAACTATTTGCCATTAAAAATGTAGCCCTTATCGTATAAAAGTTATTAAACATATTATTTGTTGATAGTGATTAGAGTTATATTTATGGTTGGTTGTGTAGGTATCAAACTGGTTTATAAATGCGCGTGTTCGGCTATGGAAACCATTGATTGAGGAAATGTATGCTGAAATGAATAGAAGAAAAGCTTGTCGAAATGAAGGAGAAAATGAGAGCAGTGAAAGAAGCAGGATAAGCATTAACAATCAAATGTTTAATATGAATTGA
Protein sequence

>MS.gene32978.t1

MENDVYTAQMNMAGQVSNIEDITQHLTQKPLIHCYSFDLNNQNNIINGIPILSGGEQDQHVDASFMNQVTIADNSFVTSQHGRTIVENPSNLIVNNNDFSVPARIGLQENLEAIVPYIFNNWHDTSNSNPLCATFGDNNSYVNKFLKAQESNVGTEFMSYSPIGNIGPNGWQSSNVANLTNLAYSSSNCSNELSLSLATSPTSGQCSEISCSDLTHSMNGTRSGLEQASCSSMELSMSLGNDKHVKFSPAILGSRYLAVIQEILVQIATYSFENLDEINYSGSGVRGRGNKSTLSNTTKRRIGINRDESPMSEAYADSSLQRHAVESKQSQLLMLLQMVDSQYSQCLDEIHTVVSAFHAATELDPQIHAHFAVKTVSRLYKDLRERISKHILSMGSNFNSSWSEEDKELSVETSFIQKQWALQQLKRKDQLWRPQRGLPERSVSVLRDWMFQNFLHPYPKDAEKHLLAIKSGLTRSQVSNWFINARVRLWKPLIEEMYAEMNRRKACRNEGENESSERSRISINNQMFNMN