AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33091

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33091.t1 MTR_1g013450 94.357 319 15 2 1 319 1 316 0.0 622
MS.gene33091.t1 MTR_3g105710 54.375 320 115 7 1 319 1 290 1.10e-101 300
MS.gene33091.t1 MTR_4g128930 46.389 360 143 8 4 318 20 374 1.44e-93 283
MS.gene33091.t1 MTR_7g018170 62.500 88 33 0 4 91 24 111 5.98e-35 131
MS.gene33091.t1 MTR_7g018170 66.216 74 17 1 253 318 322 395 3.83e-23 99.0
MS.gene33091.t1 MTR_1g023260 46.392 97 42 1 6 92 5 101 1.73e-22 95.1
MS.gene33091.t1 MTR_1g023260 46.392 97 42 1 6 92 5 101 3.76e-22 92.4
MS.gene33091.t1 MTR_5g069480 32.749 171 105 3 5 172 4 167 4.78e-21 91.7
MS.gene33091.t1 MTR_5g069480 32.749 171 105 3 5 172 4 167 5.55e-21 92.8
MS.gene33091.t1 MTR_5g021580 44.565 92 41 2 5 88 4 93 4.14e-19 84.0
MS.gene33091.t1 MTR_5g021580 44.211 95 43 2 5 91 4 96 4.67e-19 84.0
MS.gene33091.t1 MTR_4g071200 43.299 97 45 1 6 92 5 101 7.72e-19 84.0
MS.gene33091.t1 MTR_2g073370 41.667 96 47 1 6 92 5 100 4.60e-18 83.2
MS.gene33091.t1 MTR_4g067320 42.391 92 44 1 6 88 5 96 6.32e-18 82.0
MS.gene33091.t1 MTR_4g067320 42.391 92 44 1 6 88 5 96 6.60e-18 81.6
MS.gene33091.t1 MTR_3g082630 37.500 104 64 1 5 108 4 106 6.90e-18 84.0
MS.gene33091.t1 MTR_3g117320 41.237 97 47 1 6 92 5 101 2.06e-17 80.1
MS.gene33091.t1 MTR_7g108150 39.326 89 53 1 6 94 20 107 9.02e-17 80.5
MS.gene33091.t1 MTR_3g113070 37.864 103 53 1 6 97 5 107 2.92e-16 77.0
MS.gene33091.t1 MTR_2g099010 40.217 92 46 1 6 88 5 96 8.90e-16 75.9
MS.gene33091.t1 MTR_2g099010 40.217 92 46 1 6 88 5 96 9.22e-16 75.9
MS.gene33091.t1 MTR_7g083540 38.710 93 52 1 6 98 5 92 2.36e-14 73.6
MS.gene33091.t1 MTR_3g034680 60.000 45 18 0 50 94 11 55 7.31e-14 67.0
MS.gene33091.t1 MTR_2g088900 39.560 91 52 1 5 95 100 187 3.48e-13 70.5
MS.gene33091.t1 MTR_1g109350 36.486 74 47 0 4 77 3 76 1.75e-12 67.8
MS.gene33091.t1 MTR_1g110870 47.561 82 36 2 224 303 351 427 2.08e-12 67.8
MS.gene33091.t1 MTR_8g104190 70.455 44 13 0 258 301 358 401 3.03e-12 67.4
MS.gene33091.t1 MTR_5g072780 47.826 69 33 1 235 300 148 216 8.46e-12 63.9
MS.gene33091.t1 MTR_2g096080 42.188 64 37 0 247 310 144 207 6.46e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33091.t1 AT5G24930 53.977 352 103 14 1 304 1 341 2.18e-97 292
MS.gene33091.t1 AT2G24790 52.733 311 104 11 2 306 4 277 6.61e-94 281
MS.gene33091.t1 AT3G02380 43.195 338 164 7 4 318 14 346 9.09e-83 254
MS.gene33091.t1 AT5G57660 43.182 352 150 12 2 318 18 354 1.11e-71 226
MS.gene33091.t1 AT5G15850 39.943 348 169 7 6 318 12 354 1.67e-69 220
MS.gene33091.t1 AT5G15840 38.904 365 159 14 6 318 20 372 1.80e-68 218
MS.gene33091.t1 AT2G24790 49.765 213 75 7 2 210 4 188 1.53e-57 185
MS.gene33091.t1 AT5G15840 44.681 141 54 3 6 126 20 156 1.74e-34 127
MS.gene33091.t1 AT2G47890 29.254 335 187 10 4 302 11 331 1.06e-29 115
MS.gene33091.t1 AT2G21320 44.211 95 43 2 5 91 4 96 4.90e-19 83.2
MS.gene33091.t1 AT4G38960 43.158 95 44 2 5 91 4 96 8.53e-19 82.8
MS.gene33091.t1 AT4G38960 43.158 95 44 2 5 91 4 96 8.53e-19 82.8
MS.gene33091.t1 AT1G78600 42.708 96 46 1 6 92 5 100 1.67e-18 84.7
MS.gene33091.t1 AT1G78600 42.708 96 46 1 6 92 5 100 2.57e-18 84.3
MS.gene33091.t1 AT1G75540 40.404 99 47 1 6 92 5 103 1.37e-17 82.4
MS.gene33091.t1 AT2G47890 40.659 91 52 1 4 94 11 99 1.76e-17 81.6
MS.gene33091.t1 AT2G47890 40.659 91 52 1 4 94 11 99 3.22e-17 79.7
MS.gene33091.t1 AT2G33500 40.449 89 53 0 6 94 12 100 4.85e-17 81.6
MS.gene33091.t1 AT2G33500 40.449 89 53 0 6 94 12 100 5.01e-17 81.6
MS.gene33091.t1 AT1G06040 43.478 92 43 1 6 88 5 96 1.20e-16 78.6
MS.gene33091.t1 AT1G06040 43.478 92 43 1 6 88 5 96 2.10e-16 76.3
MS.gene33091.t1 AT5G48250 42.667 75 43 0 5 79 4 78 2.22e-16 79.3
MS.gene33091.t1 AT1G28050 40.449 89 53 0 6 94 9 97 2.32e-16 79.7
MS.gene33091.t1 AT2G31380 29.798 198 80 6 6 144 5 202 1.14e-15 75.5
MS.gene33091.t1 AT3G07650 42.466 73 42 0 5 77 4 76 2.34e-15 76.3
MS.gene33091.t1 AT3G07650 42.466 73 42 0 5 77 4 76 2.34e-15 76.3
MS.gene33091.t1 AT3G07650 42.466 73 42 0 5 77 4 76 2.34e-15 76.3
MS.gene33091.t1 AT3G07650 42.466 73 42 0 5 77 4 76 2.34e-15 76.3
MS.gene33091.t1 AT4G15250 40.476 84 50 0 6 89 5 88 3.32e-15 75.5
MS.gene33091.t1 AT4G39070 38.776 98 50 1 5 92 4 101 2.10e-14 72.0
MS.gene33091.t1 AT1G68190 38.961 77 47 0 4 80 12 88 6.61e-14 72.0
MS.gene33091.t1 AT1G68190 38.961 77 47 0 4 80 12 88 6.61e-14 72.0
MS.gene33091.t1 AT1G68190 38.961 77 47 0 4 80 41 117 7.61e-14 72.0
MS.gene33091.t1 AT1G49130 53.968 63 29 0 239 301 259 321 1.77e-13 70.5
MS.gene33091.t1 AT4G10240 36.275 102 46 2 6 92 5 102 1.98e-13 67.8
MS.gene33091.t1 AT1G49130 53.968 63 29 0 239 301 252 314 2.00e-13 70.1
MS.gene33091.t1 AT3G21880 36.364 88 46 1 6 83 5 92 6.70e-13 68.9
MS.gene33091.t1 AT1G68520 66.667 48 16 0 258 305 357 404 6.89e-13 69.3
MS.gene33091.t1 AT3G21880 36.364 88 46 1 6 83 9 96 7.56e-13 68.9
MS.gene33091.t1 AT3G21880 36.364 88 46 1 6 83 9 96 7.56e-13 68.9
MS.gene33091.t1 AT1G73870 68.085 47 15 0 257 303 344 390 1.67e-12 68.2
MS.gene33091.t1 AT1G25440 72.093 43 12 0 258 300 361 403 4.34e-12 67.0
MS.gene33091.t1 AT5G41380 52.000 50 24 0 254 303 211 260 9.74e-11 62.4

Find 87 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTGAGATCAGGGAATTT+AGG 0.162993 1.1:-7100965 None:intergenic
AGCAGCTGCGTCGGCTTTGC+AGG 0.207136 1.1:-7100750 None:intergenic
GCGAACCTTCCTTTAATTCT+AGG 0.234127 1.1:-7101546 None:intergenic
GAAACTAGACCTAGAATTAA+AGG 0.239849 1.1:+7101537 MS.gene33091:CDS
ATTTAGGGTTTGAAGGAGTT+TGG 0.272290 1.1:-7100949 None:intergenic
AATTGAGATCAGGGAATTTA+GGG 0.282604 1.1:-7100964 None:intergenic
GTGACGAAATCGTCAATTTC+GGG 0.319268 1.1:-7101004 None:intergenic
TGTTGCTTTGGATGACTTGC+AGG 0.340517 1.1:-7100594 None:intergenic
AAGAAGCAGAAGCTGCTTCC+TGG 0.355450 1.1:+7100921 MS.gene33091:CDS
TCAGGGAATTTAGGGTTTGA+AGG 0.367060 1.1:-7100956 None:intergenic
AGTGACGAAATCGTCAATTT+CGG 0.368521 1.1:-7101005 None:intergenic
CCGGAGCTTGTTCGCAGACT+TGG 0.370945 1.1:-7100718 None:intergenic
GACGCCATCTGCGGTGGTGC+CGG 0.374473 1.1:-7101065 None:intergenic
CACCGCAGATGGCGTCGTTC+CGG 0.376246 1.1:+7101072 MS.gene33091:CDS
GTGGCGGGAGGCGAGTTTGT+TGG 0.388480 1.1:-7100678 None:intergenic
GTTGTTGTTGTGGTGGTGGA+AGG 0.394821 1.1:-7100849 None:intergenic
GAGTGTGACGCGGTGGTGGC+GGG 0.403622 1.1:-7100693 None:intergenic
TAGTGAGAGTAATTGAGATC+AGG 0.412297 1.1:-7100974 None:intergenic
ACGGCAGAATAGTGTTGCTT+TGG 0.415438 1.1:-7100606 None:intergenic
CAGAGAAGAATGATTGTTGT+TGG 0.418301 1.1:-7100874 None:intergenic
AGCTTCTGCTTCTTCGTTGG+TGG 0.421356 1.1:-7100912 None:intergenic
GGCTGTTGTTGTTGTGGTGG+TGG 0.426525 1.1:-7100853 None:intergenic
ACGCCATCTGCGGTGGTGCC+GGG 0.428709 1.1:-7101064 None:intergenic
CCGTCTCCGTCGCCGTCGTT+TGG 0.429025 1.1:-7101386 None:intergenic
AGAGTGTGACGCGGTGGTGG+CGG 0.429623 1.1:-7100694 None:intergenic
AGTGAACTTCATAGTTCAAC+AGG 0.432963 1.1:-7101628 None:intergenic
AGTGAGAGTAATTGAGATCA+GGG 0.433298 1.1:-7100973 None:intergenic
TCCGTCATCACGTTTCCGTC+TGG 0.440194 1.1:-7101345 None:intergenic
CGTTCGTGGCGGCGAGCTAG+TGG 0.441707 1.1:-7100812 None:intergenic
ATCGGAACCGCCACCGTCAT+CGG 0.447848 1.1:-7101411 None:intergenic
TTAGGTATCTTCGCCGTCGA+TGG 0.464857 1.1:+7101308 MS.gene33091:intron
TGGTGGTGGAAGGTGGTGAG+AGG 0.469506 1.1:-7100839 None:intergenic
TCTCTTTCCACCGCCGTCAT+CGG 0.470887 1.1:-7101429 None:intergenic
AGCAGCTTCTGCTTCTTCGT+TGG 0.474181 1.1:-7100915 None:intergenic
GCTTTGCAGGTGACGTGAGC+CGG 0.474575 1.1:-7100737 None:intergenic
GGCGGTTCCGATGACGGCGG+TGG 0.476197 1.1:+7101422 MS.gene33091:CDS
GACGGTGGCGGTTCCGATGA+CGG 0.482863 1.1:+7101416 MS.gene33091:CDS
TTCGTGTTCGTGTTCGTGTT+CGG 0.487884 1.1:-7101119 None:intergenic
CCAAGTCTGCGAACAAGCTC+CGG 0.494055 1.1:+7100718 MS.gene33091:CDS
TTAATTGCAGAGGATGAATA+CGG 0.494889 1.1:+7101594 MS.gene33091:CDS
TGAAGGAGTTTGGAGAAGCC+AGG 0.505414 1.1:-7100939 None:intergenic
GGCAGAGTGTGACGCGGTGG+TGG 0.506125 1.1:-7100697 None:intergenic
GTTGTTGTGGTGGTGGAAGG+TGG 0.511007 1.1:-7100846 None:intergenic
TGGTGAGAGGGACACGTTCG+TGG 0.516914 1.1:-7100826 None:intergenic
GTTGGCTGTTGTTGTTGTGG+TGG 0.517079 1.1:-7100856 None:intergenic
GGTATCTTCGCCGTCGATGG+AGG 0.526645 1.1:+7101311 MS.gene33091:intron
TTCGTGTTCGTGTTCGGTGG+TGG 0.532063 1.1:-7101113 None:intergenic
AAATATGAATTTAATTGCAG+AGG 0.534945 1.1:+7101584 MS.gene33091:CDS
AGTCCCGGCACCACCGCAGA+TGG 0.542153 1.1:+7101061 MS.gene33091:CDS
CGGCGGTGGAAAGAGAAGCT+AGG 0.543681 1.1:+7101436 MS.gene33091:CDS
AAAGAGAAGCTAGGGTTTCG+AGG 0.545550 1.1:+7101445 MS.gene33091:CDS
GTTCGTGGCGGCGAGCTAGT+GGG 0.545982 1.1:-7100811 None:intergenic
GTTGTTGGCTGTTGTTGTTG+TGG 0.546859 1.1:-7100859 None:intergenic
GGTGGTGGAAGGTGGTGAGA+GGG 0.548296 1.1:-7100838 None:intergenic
AGGCGAGTTTGTTGGCAGCA+TGG 0.549459 1.1:-7100670 None:intergenic
AGAGTGGATGTCATGATCAC+AGG 0.550527 1.1:-7100783 None:intergenic
TCTTCGCCGTCGATGGAGGT+TGG 0.551535 1.1:+7101315 MS.gene33091:CDS
ACGCCGGAGCAAAACAGTCC+CGG 0.553478 1.1:+7101046 MS.gene33091:CDS
CGGAACGACGCCATCTGCGG+TGG 0.553872 1.1:-7101071 None:intergenic
GACGGAGACGGCGCCGATGA+CGG 0.554357 1.1:+7101398 MS.gene33091:CDS
GGCGGTGGAAAGAGAAGCTA+GGG 0.558883 1.1:+7101437 MS.gene33091:CDS
GACGGCGCCGATGACGGTGG+CGG 0.560155 1.1:+7101404 MS.gene33091:CDS
ACCAGACGGAAACGTGATGA+CGG 0.572547 1.1:+7101344 MS.gene33091:CDS
TGATTGAAATTGTAAGTGAA+AGG 0.578430 1.1:-7101181 None:intergenic
TGTGACGCGGTGGTGGCGGG+AGG 0.581988 1.1:-7100690 None:intergenic
CCAAACGACGGCGACGGAGA+CGG 0.583977 1.1:+7101386 MS.gene33091:CDS
TTTGTTGGCAGCATGGATGT+TGG 0.587996 1.1:-7100663 None:intergenic
CACCGGAACGACGCCATCTG+CGG 0.589463 1.1:-7101074 None:intergenic
TGGAATCACATGTGAGACAA+AGG 0.606070 1.1:-7100643 None:intergenic
CGGTTACCAAACGACGGCGA+CGG 0.608475 1.1:+7101380 MS.gene33091:CDS
GATACATAGAGCAGCTGCGT+CGG 0.618915 1.1:-7100759 None:intergenic
CTAGACCTAGAATTAAAGGA+AGG 0.629185 1.1:+7101541 MS.gene33091:CDS
AAAGGAAAGCTGAATCAGAA+CGG 0.631900 1.1:-7100625 None:intergenic
ACAACTCCAACCTCCATCGA+CGG 0.637687 1.1:-7101321 None:intergenic
GAGCTAGTGGGTTAGCAGAG+TGG 0.641063 1.1:-7100799 None:intergenic
AACTTCATAGTTCAACAGGA+AGG 0.655940 1.1:-7101624 None:intergenic
GTGTTCGTGTTCGTGTTCGG+TGG 0.658446 1.1:-7101116 None:intergenic
GGAGACGGCGCCGATGACGG+TGG 0.675670 1.1:+7101401 MS.gene33091:CDS
GAGGTTGGAGTTGTACCAGA+CGG 0.695762 1.1:+7101330 MS.gene33091:CDS
CAACGCTAAAACAGACACGC+CGG 0.702951 1.1:+7101030 MS.gene33091:CDS
TGAGAGGGACACGTTCGTGG+CGG 0.705181 1.1:-7100823 None:intergenic
CTTGGCAGAGTGTGACGCGG+TGG 0.706255 1.1:-7100700 None:intergenic
AGACTTGGCAGAGTGTGACG+CGG 0.716379 1.1:-7100703 None:intergenic
TGACGAAATCGTCAATTTCG+GGG 0.717237 1.1:-7101003 None:intergenic
GTACTGCGGTTACCAAACGA+CGG 0.762753 1.1:+7101374 MS.gene33091:CDS
GGTGGCGGTTCCGATGACGG+CGG 0.772550 1.1:+7101419 MS.gene33091:CDS
ATGACGGAGATATCGTACTG+CGG 0.812252 1.1:+7101360 MS.gene33091:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCGTAATTTTTTTGAATTT+TGG - chr1.1:7101226-7101245 None:intergenic 15.0%
!! AAATATGAATTTAATTGCAG+AGG + chr1.1:7101584-7101603 MS.gene33091:CDS 20.0%
!!! ATTTCTTTTTTGTGTTGTTT+AGG + chr1.1:7101290-7101309 MS.gene33091:intron 20.0%
! TGATTGAAATTGTAAGTGAA+AGG - chr1.1:7101184-7101203 None:intergenic 25.0%
AATTGAGATCAGGGAATTTA+GGG - chr1.1:7100967-7100986 None:intergenic 30.0%
ATTCAGAGTTCAAATTGAAG+AGG - chr1.1:7101264-7101283 None:intergenic 30.0%
GAAACTAGACCTAGAATTAA+AGG + chr1.1:7101537-7101556 MS.gene33091:CDS 30.0%
TAATTGAGATCAGGGAATTT+AGG - chr1.1:7100968-7100987 None:intergenic 30.0%
TTAATTGCAGAGGATGAATA+CGG + chr1.1:7101594-7101613 MS.gene33091:CDS 30.0%
! TTTTGGATTTCTCGTTCTTA+CGG - chr1.1:7101209-7101228 None:intergenic 30.0%
AAAGGAAAGCTGAATCAGAA+CGG - chr1.1:7100628-7100647 None:intergenic 35.0%
AGTGACGAAATCGTCAATTT+CGG - chr1.1:7101008-7101027 None:intergenic 35.0%
AGTGAGAGTAATTGAGATCA+GGG - chr1.1:7100976-7100995 None:intergenic 35.0%
CAGAGAAGAATGATTGTTGT+TGG - chr1.1:7100877-7100896 None:intergenic 35.0%
CTAGACCTAGAATTAAAGGA+AGG + chr1.1:7101541-7101560 MS.gene33091:CDS 35.0%
TAGTGAGAGTAATTGAGATC+AGG - chr1.1:7100977-7100996 None:intergenic 35.0%
! ATTTAGGGTTTGAAGGAGTT+TGG - chr1.1:7100952-7100971 None:intergenic 35.0%
!!! GTAAGTGAAAGGTTTTGAGT+TGG - chr1.1:7101173-7101192 None:intergenic 35.0%
GCGAACCTTCCTTTAATTCT+AGG - chr1.1:7101549-7101568 None:intergenic 40.0%
GTGACGAAATCGTCAATTTC+GGG - chr1.1:7101007-7101026 None:intergenic 40.0%
TGACGAAATCGTCAATTTCG+GGG - chr1.1:7101006-7101025 None:intergenic 40.0%
TGGAATCACATGTGAGACAA+AGG - chr1.1:7100646-7100665 None:intergenic 40.0%
! TCAGGGAATTTAGGGTTTGA+AGG - chr1.1:7100959-7100978 None:intergenic 40.0%
AAAGAGAAGCTAGGGTTTCG+AGG + chr1.1:7101445-7101464 MS.gene33091:CDS 45.0%
AGAGTGGATGTCATGATCAC+AGG - chr1.1:7100786-7100805 None:intergenic 45.0%
TTCGTGTTCGTGTTCGTGTT+CGG - chr1.1:7101122-7101141 None:intergenic 45.0%
TTTGTTGGCAGCATGGATGT+TGG - chr1.1:7100666-7100685 None:intergenic 45.0%
! ATGACGGAGATATCGTACTG+CGG + chr1.1:7101360-7101379 MS.gene33091:CDS 45.0%
! GTTGTTGGCTGTTGTTGTTG+TGG - chr1.1:7100862-7100881 None:intergenic 45.0%
!! ACGGCAGAATAGTGTTGCTT+TGG - chr1.1:7100609-7100628 None:intergenic 45.0%
!! TGTTGCTTTGGATGACTTGC+AGG - chr1.1:7100597-7100616 None:intergenic 45.0%
AAGAAGCAGAAGCTGCTTCC+TGG + chr1.1:7100921-7100940 MS.gene33091:CDS 50.0%
ACAACTCCAACCTCCATCGA+CGG - chr1.1:7101324-7101343 None:intergenic 50.0%
ACCAGACGGAAACGTGATGA+CGG + chr1.1:7101344-7101363 MS.gene33091:CDS 50.0%
AGCAGCTTCTGCTTCTTCGT+TGG - chr1.1:7100918-7100937 None:intergenic 50.0%
AGCTTCTGCTTCTTCGTTGG+TGG - chr1.1:7100915-7100934 None:intergenic 50.0%
CAACGCTAAAACAGACACGC+CGG + chr1.1:7101030-7101049 MS.gene33091:CDS 50.0%
GAGGTTGGAGTTGTACCAGA+CGG + chr1.1:7101330-7101349 MS.gene33091:CDS 50.0%
GATACATAGAGCAGCTGCGT+CGG - chr1.1:7100762-7100781 None:intergenic 50.0%
GTACTGCGGTTACCAAACGA+CGG + chr1.1:7101374-7101393 MS.gene33091:CDS 50.0%
TGAAGGAGTTTGGAGAAGCC+AGG - chr1.1:7100942-7100961 None:intergenic 50.0%
TTAGGTATCTTCGCCGTCGA+TGG + chr1.1:7101308-7101327 MS.gene33091:intron 50.0%
! GTTGGCTGTTGTTGTTGTGG+TGG - chr1.1:7100859-7100878 None:intergenic 50.0%
!! GTTGTTGTTGTGGTGGTGGA+AGG - chr1.1:7100852-7100871 None:intergenic 50.0%
!!! GTTTTGCTCTGAGACTGCAC+CGG - chr1.1:7101094-7101113 None:intergenic 50.0%
AGACTTGGCAGAGTGTGACG+CGG - chr1.1:7100706-7100725 None:intergenic 55.0%
CCAAGTCTGCGAACAAGCTC+CGG + chr1.1:7100718-7100737 MS.gene33091:CDS 55.0%
GGCGGTGGAAAGAGAAGCTA+GGG + chr1.1:7101437-7101456 MS.gene33091:CDS 55.0%
GTGTTCGTGTTCGTGTTCGG+TGG - chr1.1:7101119-7101138 None:intergenic 55.0%
TCCGTCATCACGTTTCCGTC+TGG - chr1.1:7101348-7101367 None:intergenic 55.0%
TCTCTTTCCACCGCCGTCAT+CGG - chr1.1:7101432-7101451 None:intergenic 55.0%
! GGCTGTTGTTGTTGTGGTGG+TGG - chr1.1:7100856-7100875 None:intergenic 55.0%
! TTCGTGTTCGTGTTCGGTGG+TGG - chr1.1:7101116-7101135 None:intergenic 55.0%
!! AGGCGAGTTTGTTGGCAGCA+TGG - chr1.1:7100673-7100692 None:intergenic 55.0%
!! GAGCTAGTGGGTTAGCAGAG+TGG - chr1.1:7100802-7100821 None:intergenic 55.0%
!! GTTGTTGTGGTGGTGGAAGG+TGG - chr1.1:7100849-7100868 None:intergenic 55.0%
ACGCCGGAGCAAAACAGTCC+CGG + chr1.1:7101046-7101065 MS.gene33091:CDS 60.0%
ATCGGAACCGCCACCGTCAT+CGG - chr1.1:7101414-7101433 None:intergenic 60.0%
CGGCGGTGGAAAGAGAAGCT+AGG + chr1.1:7101436-7101455 MS.gene33091:CDS 60.0%
CGGTTACCAAACGACGGCGA+CGG + chr1.1:7101380-7101399 MS.gene33091:CDS 60.0%
GCTTTGCAGGTGACGTGAGC+CGG - chr1.1:7100740-7100759 None:intergenic 60.0%
GGTATCTTCGCCGTCGATGG+AGG + chr1.1:7101311-7101330 MS.gene33091:intron 60.0%
TCTTCGCCGTCGATGGAGGT+TGG + chr1.1:7101315-7101334 MS.gene33091:CDS 60.0%
TGAGAGGGACACGTTCGTGG+CGG - chr1.1:7100826-7100845 None:intergenic 60.0%
TGGTGAGAGGGACACGTTCG+TGG - chr1.1:7100829-7100848 None:intergenic 60.0%
! CCGGAGCTTGTTCGCAGACT+TGG - chr1.1:7100721-7100740 None:intergenic 60.0%
! GTGCCGGGACTGTTTTGCTC+CGG - chr1.1:7101052-7101071 None:intergenic 60.0%
!! GGTGGTGGAAGGTGGTGAGA+GGG - chr1.1:7100841-7100860 None:intergenic 60.0%
!! TGGTGGTGGAAGGTGGTGAG+AGG - chr1.1:7100842-7100861 None:intergenic 60.0%
CACCGCAGATGGCGTCGTTC+CGG + chr1.1:7101072-7101091 MS.gene33091:CDS 65.0%
CACCGGAACGACGCCATCTG+CGG - chr1.1:7101077-7101096 None:intergenic 65.0%
CCAAACGACGGCGACGGAGA+CGG + chr1.1:7101386-7101405 MS.gene33091:CDS 65.0%
CTTGGCAGAGTGTGACGCGG+TGG - chr1.1:7100703-7100722 None:intergenic 65.0%
GTTCGTGGCGGCGAGCTAGT+GGG - chr1.1:7100814-7100833 None:intergenic 65.0%
! AGAGTGTGACGCGGTGGTGG+CGG - chr1.1:7100697-7100716 None:intergenic 65.0%
! GACGGTGGCGGTTCCGATGA+CGG + chr1.1:7101416-7101435 MS.gene33091:CDS 65.0%
! GTGGCGGGAGGCGAGTTTGT+TGG - chr1.1:7100681-7100700 None:intergenic 65.0%
!! AGCAGCTGCGTCGGCTTTGC+AGG - chr1.1:7100753-7100772 None:intergenic 65.0%
ACGCCATCTGCGGTGGTGCC+GGG - chr1.1:7101067-7101086 None:intergenic 70.0%
AGTCCCGGCACCACCGCAGA+TGG + chr1.1:7101061-7101080 MS.gene33091:CDS 70.0%
CCGTCTCCGTCGCCGTCGTT+TGG - chr1.1:7101389-7101408 None:intergenic 70.0%
CGGAACGACGCCATCTGCGG+TGG - chr1.1:7101074-7101093 None:intergenic 70.0%
CGTTCGTGGCGGCGAGCTAG+TGG - chr1.1:7100815-7100834 None:intergenic 70.0%
GACGCCATCTGCGGTGGTGC+CGG - chr1.1:7101068-7101087 None:intergenic 70.0%
GGCAGAGTGTGACGCGGTGG+TGG - chr1.1:7100700-7100719 None:intergenic 70.0%
! GAGTGTGACGCGGTGGTGGC+GGG - chr1.1:7100696-7100715 None:intergenic 70.0%
! GGTGGCGGTTCCGATGACGG+CGG + chr1.1:7101419-7101438 MS.gene33091:CDS 70.0%
!! GACGGAGACGGCGCCGATGA+CGG + chr1.1:7101398-7101417 MS.gene33091:CDS 70.0%
! GGCGGTTCCGATGACGGCGG+TGG + chr1.1:7101422-7101441 MS.gene33091:CDS 75.0%
!! GACGGCGCCGATGACGGTGG+CGG + chr1.1:7101404-7101423 MS.gene33091:CDS 75.0%
!! GGAGACGGCGCCGATGACGG+TGG + chr1.1:7101401-7101420 MS.gene33091:CDS 75.0%
!! TGTGACGCGGTGGTGGCGGG+AGG - chr1.1:7100693-7100712 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 7100572 7101635 7100572 ID=MS.gene33091
chr1.1 mRNA 7100572 7101635 7100572 ID=MS.gene33091.t1;Parent=MS.gene33091
chr1.1 exon 7100572 7101207 7100572 ID=MS.gene33091.t1.exon1;Parent=MS.gene33091.t1
chr1.1 CDS 7100572 7101207 7100572 ID=cds.MS.gene33091.t1;Parent=MS.gene33091.t1
chr1.1 exon 7101312 7101635 7101312 ID=MS.gene33091.t1.exon2;Parent=MS.gene33091.t1
chr1.1 CDS 7101312 7101635 7101312 ID=cds.MS.gene33091.t1;Parent=MS.gene33091.t1
Gene Sequence

>MS.gene33091

ATGGCTACTAAGCTATGTGATTCCTGCAAGTCATCCAAAGCAACACTATTCTGCCGTTCTGATTCAGCTTTCCTTTGTCTCACATGTGATTCCAACATCCATGCTGCCAACAAACTCGCCTCCCGCCACCACCGCGTCACACTCTGCCAAGTCTGCGAACAAGCTCCGGCTCACGTCACCTGCAAAGCCGACGCAGCTGCTCTATGTATCTCCTGTGATCATGACATCCACTCTGCTAACCCACTAGCTCGCCGCCACGAACGTGTCCCTCTCACCACCTTCCACCACCACAACAACAACAGCCAACAACAATCATTCTTCTCTGAAAATGATCACGATGCCACCAACGAAGAAGCAGAAGCTGCTTCCTGGCTTCTCCAAACTCCTTCAAACCCTAAATTCCCTGATCTCAATTACTCTCACTACTCGTACCCCGAAATTGACGATTTCGTCACTGTCAACGCTAAAACAGACACGCCGGAGCAAAACAGTCCCGGCACCACCGCAGATGGCGTCGTTCCGGTGCAGTCTCAGAGCAAAACCACCACCGAACACGAACACGAACACGAACACTACTCAGATATCAACATCGATTTCTCCAACTCAAAACCTTTCACTTACAATTTCAATCACACCGTAAGAACGAGAAATCCAAAATTCAAAAAAATTACGATGAATCGTGAAATTTACCTCTTCAATTTGAACTCTGAATGTTCTTATTTCTTTTTTGTGTTGTTTAGGTATCTTCGCCGTCGATGGAGGTTGGAGTTGTACCAGACGGAAACGTGATGACGGAGATATCGTACTGCGGTTACCAAACGACGGCGACGGAGACGGCGCCGATGACGGTGGCGGTTCCGATGACGGCGGTGGAAAGAGAAGCTAGGGTTTCGAGGTACAGAGAGAAGAGAAAGAATAGAAAGTTCGAGAAGACAATTCGTTACGCTTCTAGAAAAGCGTATGCAGAAACTAGACCTAGAATTAAAGGAAGGTTCGCGAAACGTTCAGATTTAAATATGAATTTAATTGCAGAGGATGAATACGGCGTCGTTCCTTCCTGTTGA
Protein sequence

>MS.gene33091.t1

MATKLCDSCKSSKATLFCRSDSAFLCLTCDSNIHAANKLASRHHRVTLCQVCEQAPAHVTCKADAAALCISCDHDIHSANPLARRHERVPLTTFHHHNNNSQQQSFFSENDHDATNEEAEAASWLLQTPSNPKFPDLNYSHYSYPEIDDFVTVNAKTDTPEQNSPGTTADGVVPVQSQSKTTTEHEHEHEHYSDINIDFSNSKPFTYNFNHTVSSPSMEVGVVPDGNVMTEISYCGYQTTATETAPMTVAVPMTAVEREARVSRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSDLNMNLIAEDEYGVVPSC