Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33875.t1 | XP_013466252.1 | 97.2 | 678 | 15 | 3 | 1 | 678 | 1 | 674 | 0.00E+00 | 1236.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33875.t1 | Q8L860 | 54.0 | 700 | 275 | 16 | 1 | 678 | 1 | 675 | 9.7e-169 | 595.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33875.t1 | A0A072VFS3 | 97.2 | 678 | 15 | 3 | 1 | 678 | 1 | 674 | 0.0e+00 | 1236.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050359 | MS.gene33875 | 0.802107 | 6.56E-49 | -1.69E-46 |
MS.gene050752 | MS.gene33875 | 0.831655 | 1.48E-55 | -1.69E-46 |
MS.gene050838 | MS.gene33875 | 0.80035 | 1.50E-48 | -1.69E-46 |
MS.gene050955 | MS.gene33875 | 0.808207 | 3.47E-50 | -1.69E-46 |
MS.gene051234 | MS.gene33875 | 0.811177 | 7.98E-51 | -1.69E-46 |
MS.gene052072 | MS.gene33875 | 0.807675 | 4.50E-50 | -1.69E-46 |
MS.gene052242 | MS.gene33875 | -0.822957 | 1.79E-53 | -1.69E-46 |
MS.gene052296 | MS.gene33875 | 0.806142 | 9.50E-50 | -1.69E-46 |
MS.gene052479 | MS.gene33875 | 0.822216 | 2.67E-53 | -1.69E-46 |
MS.gene052818 | MS.gene33875 | -0.809356 | 1.97E-50 | -1.69E-46 |
MS.gene052932 | MS.gene33875 | 0.802263 | 6.10E-49 | -1.69E-46 |
MS.gene053058 | MS.gene33875 | 0.810399 | 1.18E-50 | -1.69E-46 |
MS.gene053879 | MS.gene33875 | 0.81103 | 8.58E-51 | -1.69E-46 |
MS.gene054403 | MS.gene33875 | 0.832235 | 1.06E-55 | -1.69E-46 |
MS.gene057102 | MS.gene33875 | 0.803886 | 2.81E-49 | -1.69E-46 |
MS.gene057576 | MS.gene33875 | 0.804806 | 1.81E-49 | -1.69E-46 |
MS.gene05781 | MS.gene33875 | 0.800855 | 1.19E-48 | -1.69E-46 |
MS.gene057999 | MS.gene33875 | 0.818846 | 1.58E-52 | -1.69E-46 |
MS.gene058074 | MS.gene33875 | 0.840258 | 9.69E-58 | -1.69E-46 |
MS.gene06018 | MS.gene33875 | 0.803923 | 2.77E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33875.t1 | MTR_1g026840 | 98.083 | 678 | 9 | 3 | 1 | 678 | 1 | 674 | 0.0 | 1357 |
MS.gene33875.t1 | MTR_3g110108 | 70.392 | 689 | 165 | 9 | 1 | 673 | 1 | 666 | 0.0 | 925 |
MS.gene33875.t1 | MTR_3g110108 | 71.789 | 475 | 105 | 5 | 1 | 462 | 1 | 459 | 0.0 | 694 |
MS.gene33875.t1 | MTR_3g088805 | 50.411 | 365 | 159 | 6 | 4 | 362 | 7 | 355 | 4.79e-106 | 332 |
MS.gene33875.t1 | MTR_7g072310 | 46.026 | 302 | 135 | 3 | 7 | 286 | 15 | 310 | 4.37e-89 | 293 |
MS.gene33875.t1 | MTR_3g097280 | 41.115 | 287 | 145 | 5 | 1 | 277 | 1 | 273 | 1.26e-59 | 208 |
MS.gene33875.t1 | MTR_7g072310 | 40.574 | 244 | 117 | 3 | 65 | 286 | 1 | 238 | 1.47e-57 | 206 |
MS.gene33875.t1 | MTR_8g095280 | 39.007 | 282 | 164 | 2 | 1 | 279 | 1 | 277 | 1.50e-57 | 200 |
MS.gene33875.t1 | MTR_8g095280 | 39.113 | 248 | 143 | 2 | 35 | 279 | 4 | 246 | 3.32e-49 | 177 |
MS.gene33875.t1 | MTR_5g007480 | 32.353 | 272 | 167 | 9 | 2 | 266 | 48 | 309 | 2.52e-34 | 135 |
MS.gene33875.t1 | MTR_4g077940 | 33.213 | 277 | 165 | 11 | 5 | 266 | 51 | 322 | 1.95e-22 | 100 |
MS.gene33875.t1 | MTR_4g077940 | 32.971 | 276 | 167 | 10 | 5 | 266 | 78 | 349 | 2.21e-22 | 100 |
MS.gene33875.t1 | MTR_7g097010 | 26.552 | 290 | 175 | 10 | 5 | 271 | 41 | 315 | 5.75e-20 | 93.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33875.t1 | AT4G32760 | 57.384 | 711 | 234 | 20 | 1 | 678 | 1 | 675 | 0.0 | 690 |
MS.gene33875.t1 | AT4G32760 | 57.042 | 710 | 239 | 18 | 1 | 678 | 1 | 676 | 0.0 | 687 |
MS.gene33875.t1 | AT4G32760 | 65.618 | 477 | 138 | 9 | 1 | 475 | 1 | 453 | 0.0 | 592 |
MS.gene33875.t1 | AT3G08790 | 48.373 | 707 | 236 | 28 | 1 | 678 | 1 | 607 | 0.0 | 531 |
MS.gene33875.t1 | AT1G21380 | 58.364 | 269 | 109 | 2 | 4 | 272 | 7 | 272 | 9.06e-105 | 328 |
MS.gene33875.t1 | AT1G76970 | 56.701 | 291 | 111 | 4 | 4 | 293 | 7 | 283 | 9.78e-104 | 323 |
MS.gene33875.t1 | AT1G76970 | 56.701 | 291 | 111 | 4 | 4 | 293 | 7 | 283 | 9.78e-104 | 323 |
MS.gene33875.t1 | AT1G76970 | 56.701 | 291 | 111 | 4 | 4 | 293 | 7 | 283 | 9.78e-104 | 323 |
MS.gene33875.t1 | AT1G76970 | 56.701 | 291 | 111 | 4 | 4 | 293 | 7 | 283 | 9.78e-104 | 323 |
MS.gene33875.t1 | AT1G76970 | 55.172 | 261 | 102 | 4 | 34 | 293 | 11 | 257 | 4.97e-84 | 271 |
MS.gene33875.t1 | AT1G76970 | 55.172 | 261 | 102 | 4 | 34 | 293 | 11 | 257 | 4.97e-84 | 271 |
MS.gene33875.t1 | AT2G38410 | 45.928 | 307 | 123 | 5 | 7 | 270 | 13 | 319 | 2.68e-76 | 258 |
MS.gene33875.t1 | AT5G01760 | 45.091 | 275 | 142 | 4 | 2 | 271 | 22 | 292 | 6.67e-75 | 251 |
MS.gene33875.t1 | AT5G63640 | 43.223 | 273 | 151 | 3 | 1 | 272 | 1 | 270 | 7.72e-66 | 224 |
MS.gene33875.t1 | AT5G63640 | 43.223 | 273 | 151 | 3 | 1 | 272 | 1 | 270 | 7.72e-66 | 224 |
MS.gene33875.t1 | AT1G76970 | 55.502 | 209 | 78 | 4 | 86 | 293 | 1 | 195 | 3.11e-63 | 214 |
MS.gene33875.t1 | AT5G16880 | 32.500 | 280 | 158 | 11 | 3 | 266 | 49 | 313 | 3.00e-33 | 132 |
MS.gene33875.t1 | AT5G16880 | 32.500 | 280 | 158 | 11 | 3 | 266 | 49 | 313 | 3.00e-33 | 132 |
MS.gene33875.t1 | AT5G16880 | 32.500 | 280 | 158 | 11 | 3 | 266 | 49 | 313 | 3.00e-33 | 132 |
MS.gene33875.t1 | AT5G16880 | 33.333 | 258 | 145 | 10 | 3 | 247 | 49 | 292 | 8.89e-31 | 123 |
MS.gene33875.t1 | AT1G06210 | 28.315 | 279 | 174 | 10 | 1 | 263 | 37 | 305 | 2.65e-21 | 97.1 |
MS.gene33875.t1 | AT1G06210 | 27.442 | 215 | 135 | 7 | 5 | 205 | 41 | 248 | 1.03e-12 | 69.7 |
Find 210 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAACTTACTTCTTTGTTGTT+AGG | 0.228067 | 1.2:+12907011 | None:intergenic |
TCAGGAACTTCTACTCAAAA+TGG | 0.249040 | 1.2:-12904457 | MS.gene33875:CDS |
CATTAGGTTGCTGGGCTGGC+TGG | 0.266398 | 1.2:+12903334 | None:intergenic |
CGTAGCCATAACCTGCAAAT+TGG | 0.286960 | 1.2:+12902483 | None:intergenic |
GCATCAACTGATTCAATGTT+TGG | 0.287115 | 1.2:+12903580 | None:intergenic |
ACAGAATGCACATGGTATTA+TGG | 0.289964 | 1.2:-12907066 | MS.gene33875:CDS |
GATACTTGGCAAGAAGCTTT+TGG | 0.303182 | 1.2:-12907807 | MS.gene33875:CDS |
TGTTGATATTGAGGAGTAAA+TGG | 0.311481 | 1.2:+12903294 | None:intergenic |
ACAGGAGGTTATTGTTGATT+TGG | 0.312747 | 1.2:-12905474 | MS.gene33875:CDS |
TCCTCTTCTGGTGCTGAAGC+AGG | 0.313482 | 1.2:-12903606 | MS.gene33875:CDS |
TTGCTGGGCTGGCTGGGTAT+TGG | 0.319150 | 1.2:+12903341 | None:intergenic |
AAGCCAGAGGATAAGTTATT+CGG | 0.322015 | 1.2:-12902326 | MS.gene33875:CDS |
GGAAACCAATTTGCAGGTTA+TGG | 0.323327 | 1.2:-12902488 | MS.gene33875:CDS |
CCTGCGCCAGCTACTTCTAA+TGG | 0.325063 | 1.2:-12903555 | MS.gene33875:CDS |
CCTAATGTTGGTGGCCAATC+TGG | 0.331093 | 1.2:-12903318 | MS.gene33875:CDS |
GATGCTCCTTTGGTTGATAC+TGG | 0.332313 | 1.2:-12904382 | MS.gene33875:CDS |
TTCTGCAACCTGACCATTCC+AGG | 0.335897 | 1.2:+12903158 | None:intergenic |
GTCCCACTTGGGATCAGCTT+TGG | 0.346784 | 1.2:+12903518 | None:intergenic |
AACTTACTTCTTTGTTGTTA+GGG | 0.355207 | 1.2:+12907012 | None:intergenic |
GGTGAAAATAGTAAAGAAAA+AGG | 0.355667 | 1.2:-12907965 | MS.gene33875:intron |
GCGAAACTCCAGTTCCAATC+AGG | 0.356777 | 1.2:-12902384 | MS.gene33875:CDS |
TTCTCTTTGACATGAAAATC+AGG | 0.358337 | 1.2:+12907846 | None:intergenic |
GCAAGTGAAGTATCTGCTTT+TGG | 0.360775 | 1.2:+12903468 | None:intergenic |
GGCCACCAACATTAGGTTGC+TGG | 0.362865 | 1.2:+12903325 | None:intergenic |
ATGAAGAAATATTACCATAA+GGG | 0.367323 | 1.2:+12903118 | None:intergenic |
CAACAACCAGCTTCCCCTTA+TGG | 0.367428 | 1.2:-12903132 | MS.gene33875:intron |
TATATGTGCAGGTCCTCTTC+TGG | 0.367659 | 1.2:-12903618 | MS.gene33875:intron |
TGTAGATATTGATGCTCCTT+TGG | 0.367957 | 1.2:-12904392 | MS.gene33875:CDS |
GGTTGAGCTTCCCAGGGAGG+CGG | 0.370824 | 1.2:+12902827 | None:intergenic |
GTTGAGCTTCCCAGGGAGGC+GGG | 0.373988 | 1.2:+12902828 | None:intergenic |
CAGCATATGCAAGGTGTTGC+AGG | 0.379990 | 1.2:-12902584 | MS.gene33875:CDS |
GTCGGCCGGTTGAGCTTCCC+AGG | 0.382699 | 1.2:+12902820 | None:intergenic |
ATGTATGGAAACCAATTTGC+AGG | 0.388230 | 1.2:-12902494 | MS.gene33875:CDS |
CCAGATTGGCCACCAACATT+AGG | 0.388416 | 1.2:+12903318 | None:intergenic |
AGCCAGAGGATAAGTTATTC+GGG | 0.389324 | 1.2:-12902325 | MS.gene33875:CDS |
GCCTCCCTGGGAAGCTCAAC+CGG | 0.390259 | 1.2:-12902825 | MS.gene33875:CDS |
CCAGGTTGGAAGCAATCAAT+TGG | 0.397618 | 1.2:-12902618 | MS.gene33875:CDS |
TACATTTGCTGCTCAATGTA+TGG | 0.403276 | 1.2:+12902437 | None:intergenic |
ACAGAGTTCCGCAAATCATC+AGG | 0.405602 | 1.2:-12902723 | MS.gene33875:CDS |
CTACGGTCAACAACAACAAC+AGG | 0.411293 | 1.2:-12902465 | MS.gene33875:CDS |
TACTGGTTCTTGTAGATACT+TGG | 0.411730 | 1.2:-12907821 | MS.gene33875:CDS |
TGCTGTTGTTGTTGATATTG+AGG | 0.412239 | 1.2:+12903285 | None:intergenic |
TCATGTCAAAGAGAAGATAC+TGG | 0.412710 | 1.2:-12907838 | MS.gene33875:CDS |
GCATTTGCCACATTTCCATT+GGG | 0.415690 | 1.2:+12903231 | None:intergenic |
GGGCCTCAAGCAATGGGTTA+TGG | 0.416438 | 1.2:-12902701 | MS.gene33875:CDS |
CCAACATTAGGTTGCTGGGC+TGG | 0.417611 | 1.2:+12903330 | None:intergenic |
ATTAGGTTGCTGGGCTGGCT+GGG | 0.420293 | 1.2:+12903335 | None:intergenic |
GAAGTCAATGGTTGTGTTTG+TGG | 0.430137 | 1.2:+12907475 | None:intergenic |
CTCGATGTTCATAGCCCAAT+CGG | 0.430614 | 1.2:+12910746 | None:intergenic |
CATCAACTGATTCAATGTTT+GGG | 0.430869 | 1.2:+12903581 | None:intergenic |
TCACTTGCTCTTGTTCCTCT+AGG | 0.432550 | 1.2:-12903453 | MS.gene33875:CDS |
TTGATAGGTGCGCAAAATAG+TGG | 0.434876 | 1.2:-12902860 | MS.gene33875:intron |
GACATATGGCCGTTAGCATT+TGG | 0.438245 | 1.2:+12902653 | None:intergenic |
GGATGAATCACTGCTATGCC+AGG | 0.440080 | 1.2:-12904536 | MS.gene33875:CDS |
CGTATAACCCTGATTGGAAC+TGG | 0.441053 | 1.2:+12902376 | None:intergenic |
TCTGTTTCAGGGGCTTAGAC+AGG | 0.441192 | 1.2:-12905492 | MS.gene33875:intron |
GTAGAGGTCTCAGCTGCGTC+TGG | 0.441395 | 1.2:+12907418 | None:intergenic |
ATCGGAGATGGTGAATTCTA+TGG | 0.441462 | 1.2:-12910802 | None:intergenic |
TATACGTCTTATGTTCCATC+GGG | 0.450942 | 1.2:-12902359 | MS.gene33875:CDS |
GCATCCGCATCACGTATGTT+TGG | 0.453144 | 1.2:+12907445 | None:intergenic |
AGCATTTGCCACATTTCCAT+TGG | 0.459100 | 1.2:+12903230 | None:intergenic |
TACATTGAGCAGCAAATGTA+TGG | 0.459475 | 1.2:-12902434 | MS.gene33875:CDS |
AACTTATCCTCTGGCTTGGA+AGG | 0.462554 | 1.2:+12902332 | None:intergenic |
TGAGCTTCCCAGGGAGGCGG+GGG | 0.463386 | 1.2:+12902830 | None:intergenic |
GGAGGTTATTGTTGATTTGG+TGG | 0.464547 | 1.2:-12905471 | MS.gene33875:CDS |
ATAAGACGTATAACCCTGAT+TGG | 0.464637 | 1.2:+12902370 | None:intergenic |
AGCTCCTGCCTGGAATGGTC+AGG | 0.464680 | 1.2:-12903166 | MS.gene33875:CDS |
CGCAAAGTACAGCTCCTGCC+TGG | 0.465640 | 1.2:-12903176 | MS.gene33875:CDS |
GACAATGGCAGTCCGGTGGC+AGG | 0.467628 | 1.2:-12902800 | MS.gene33875:CDS |
TATGCTCATCGGTCCCGATT+GGG | 0.469583 | 1.2:-12910760 | MS.gene33875:CDS |
GCCACCAACATTAGGTTGCT+GGG | 0.474480 | 1.2:+12903326 | None:intergenic |
TTGGTTGATACTGGAGATAC+TGG | 0.474645 | 1.2:-12904373 | MS.gene33875:CDS |
CACTTGGGATCAGCTTTGGC+AGG | 0.476176 | 1.2:+12903522 | None:intergenic |
CATACGTAGTTGAGTTTACA+AGG | 0.477206 | 1.2:+12905414 | None:intergenic |
ATCTGCAGCGTCTACTTGCC+AGG | 0.479242 | 1.2:-12904495 | MS.gene33875:CDS |
GACATGCTCAATCATGATCC+TGG | 0.479397 | 1.2:-12910717 | MS.gene33875:CDS |
CCAATTGATTGCTTCCAACC+TGG | 0.480702 | 1.2:+12902618 | None:intergenic |
ATGTATCCACAACAGATGTA+TGG | 0.480885 | 1.2:-12902509 | MS.gene33875:CDS |
GGTTATTGACTGCTGACATA+TGG | 0.481015 | 1.2:+12902639 | None:intergenic |
TGCCACCGGACTGCCATTGT+CGG | 0.482885 | 1.2:+12902802 | None:intergenic |
TAAACATTACCAGCAGTTCC+TGG | 0.483312 | 1.2:+12907745 | None:intergenic |
ACCACTGAGCAGGTCCCACT+TGG | 0.485032 | 1.2:+12903506 | None:intergenic |
GCCAGCTACTTCTAATGGTT+CGG | 0.489203 | 1.2:-12903550 | MS.gene33875:CDS |
TTGAGGCCCCTGATGATTTG+CGG | 0.494420 | 1.2:+12902715 | None:intergenic |
ATACATCTGTTGTGGATACA+TGG | 0.495242 | 1.2:+12902511 | None:intergenic |
AGGTGTTGCAGGGCACTACA+TGG | 0.496391 | 1.2:-12902573 | MS.gene33875:CDS |
ACCGGACTGCCATTGTCGGC+CGG | 0.498259 | 1.2:+12902806 | None:intergenic |
TCCCCGAATAACTTATCCTC+TGG | 0.499326 | 1.2:+12902323 | None:intergenic |
TCAAAATGGAAATCAGATAG+AGG | 0.499420 | 1.2:-12904443 | MS.gene33875:CDS |
TGCTGCATACCAGGAACTGC+TGG | 0.500884 | 1.2:-12907754 | MS.gene33875:intron |
TGGTTTCCATACATCTGTTG+TGG | 0.501498 | 1.2:+12902503 | None:intergenic |
ACAAGTTGCCGAGCAGATGC+AGG | 0.506068 | 1.2:+12904412 | None:intergenic |
GCAATGGGTTATGGCCAGGC+TGG | 0.509475 | 1.2:-12902692 | MS.gene33875:CDS |
CGAAACTCCAGTTCCAATCA+GGG | 0.509903 | 1.2:-12902383 | MS.gene33875:CDS |
CCTCTTCTGGTGCTGAAGCA+GGG | 0.511267 | 1.2:-12903605 | MS.gene33875:CDS |
ACCGGCCGACAATGGCAGTC+CGG | 0.511847 | 1.2:-12902807 | MS.gene33875:CDS |
TCAAGCAATGGGTTATGGCC+AGG | 0.512254 | 1.2:-12902696 | MS.gene33875:CDS |
TCATCAGGGGCCTCAAGCAA+TGG | 0.513105 | 1.2:-12902708 | MS.gene33875:CDS |
TTAGAAACATACCTTAGTGT+TGG | 0.513310 | 1.2:+12907382 | None:intergenic |
CATCAGGGGCCTCAAGCAAT+GGG | 0.515377 | 1.2:-12902707 | MS.gene33875:CDS |
TGTGGATACTGAGGTGGTAG+TGG | 0.515502 | 1.2:+12902767 | None:intergenic |
TGACTGAATTGAGGTGGTTG+TGG | 0.519401 | 1.2:+12902749 | None:intergenic |
ATATGCTCATCGGTCCCGAT+TGG | 0.523143 | 1.2:-12910761 | MS.gene33875:CDS |
TGATCAGATACAGGAGTGGC+AGG | 0.525801 | 1.2:+12903420 | None:intergenic |
AGGGCATTCTGATCAGATAC+AGG | 0.527497 | 1.2:+12903411 | None:intergenic |
TTGAGCTTCCCAGGGAGGCG+GGG | 0.527665 | 1.2:+12902829 | None:intergenic |
GAATAACTTATCCTCTGGCT+TGG | 0.531180 | 1.2:+12902328 | None:intergenic |
GTTTGTGGAGGAGTGAATAC+AGG | 0.534401 | 1.2:+12907490 | None:intergenic |
CAATTTGCAGGTTATGGCTA+CGG | 0.534873 | 1.2:-12902482 | MS.gene33875:CDS |
ACATACGTGATGCGGATGCT+CGG | 0.535203 | 1.2:-12907441 | MS.gene33875:CDS |
ATATTACCATAAGGGGAAGC+TGG | 0.535454 | 1.2:+12903126 | None:intergenic |
GCCCAGCAACCTAATGTTGG+TGG | 0.535587 | 1.2:-12903327 | MS.gene33875:CDS |
TCTCTGAGGGAATACTGCTC+CGG | 0.536339 | 1.2:+12907528 | None:intergenic |
TGAAGAAATATTACCATAAG+GGG | 0.538079 | 1.2:+12903119 | None:intergenic |
TCAATACTATGCTGCATACC+AGG | 0.541368 | 1.2:-12907763 | MS.gene33875:CDS |
AAAGGCATAAAGAAGCGGAT+TGG | 0.542432 | 1.2:-12910035 | MS.gene33875:CDS |
CATAGTTATCACCACTGAGC+AGG | 0.544400 | 1.2:+12903496 | None:intergenic |
CATCATTGAGAGCTAGTCCC+TGG | 0.544403 | 1.2:+12904518 | None:intergenic |
GGCTTGGAAGGCTTCCCCGA+TGG | 0.547370 | 1.2:+12902344 | None:intergenic |
TCGATGTTCATAGCCCAATC+GGG | 0.548956 | 1.2:+12910747 | None:intergenic |
AATGGAAATGTGGCAAATGC+TGG | 0.552770 | 1.2:-12903228 | MS.gene33875:CDS |
TGGTATTATGGATGTTCTTG+CGG | 0.553127 | 1.2:-12907054 | MS.gene33875:CDS |
TGCAGTGATTGCTCATACTG+AGG | 0.553972 | 1.2:+12903201 | None:intergenic |
TTATACGTCTTATGTTCCAT+CGG | 0.555460 | 1.2:-12902360 | MS.gene33875:CDS |
CAGGTTGGAAGCAATCAATT+GGG | 0.555583 | 1.2:-12902617 | MS.gene33875:CDS |
TCCGCATCACGTATGTTTGG+AGG | 0.557580 | 1.2:+12907448 | None:intergenic |
TAAGTTATTCGGGGATCTTG+TGG | 0.557924 | 1.2:-12902315 | MS.gene33875:CDS |
TGCAGGGCACTACATGGGCA+TGG | 0.559619 | 1.2:-12902567 | MS.gene33875:CDS |
TTTGGAGGGTATGAAGTCAA+TGG | 0.561502 | 1.2:+12907463 | None:intergenic |
CCCTGCTTCAGCACCAGAAG+AGG | 0.561683 | 1.2:+12903605 | None:intergenic |
TACATGCTACCAGCTCGACC+TGG | 0.562479 | 1.2:+12902263 | None:intergenic |
GAAGCTCAACCGGCCGACAA+TGG | 0.563209 | 1.2:-12902815 | MS.gene33875:CDS |
AAAACAACTCCAGGTCGAGC+TGG | 0.563885 | 1.2:-12902272 | MS.gene33875:CDS |
GAGGAGTAAATGGACCAGAT+TGG | 0.564498 | 1.2:+12903304 | None:intergenic |
GCCGAACCATTAGAAGTAGC+TGG | 0.571481 | 1.2:+12903549 | None:intergenic |
GTGAAGCCGAAAACAACTCC+AGG | 0.572576 | 1.2:-12902281 | MS.gene33875:CDS |
ATTTGCTTATTTCAGCGTGC+CGG | 0.572850 | 1.2:-12907547 | MS.gene33875:intron |
GTTTCAGGGGCTTAGACAGG+AGG | 0.574938 | 1.2:-12905489 | MS.gene33875:intron |
AGTACAGCTCCTGCCTGGAA+TGG | 0.575026 | 1.2:-12903171 | MS.gene33875:CDS |
CCATTAGAAGTAGCTGGCGC+AGG | 0.577223 | 1.2:+12903555 | None:intergenic |
GGATACTGACCACCTGCCAC+CGG | 0.577534 | 1.2:+12902788 | None:intergenic |
AGTCTGAATTTCCAACACTA+AGG | 0.578424 | 1.2:-12907393 | MS.gene33875:intron |
ATTCGGGGATCTTGTGGACA+TGG | 0.579335 | 1.2:-12902309 | MS.gene33875:CDS |
CAGATTGATCAGATCTCTGA+GGG | 0.581230 | 1.2:+12907515 | None:intergenic |
GCATGTACATACCACCAGCC+TGG | 0.582983 | 1.2:+12902678 | None:intergenic |
TGGTATGCAGCATAGTATTG+AGG | 0.583633 | 1.2:+12907765 | None:intergenic |
CAAGCAAAGGACGTTGTCAA+AGG | 0.585152 | 1.2:-12910053 | MS.gene33875:CDS |
TGACAAAATAGATTCATGCC+TGG | 0.586132 | 1.2:+12904477 | None:intergenic |
CCCTCCAAACATACGTGATG+CGG | 0.586421 | 1.2:-12907449 | MS.gene33875:CDS |
CAGCAGACATTCACATCTCA+AGG | 0.586696 | 1.2:-12903264 | MS.gene33875:CDS |
GGCCGACAATGGCAGTCCGG+TGG | 0.587262 | 1.2:-12902804 | MS.gene33875:CDS |
AGCATATGCAAGGTGTTGCA+GGG | 0.588258 | 1.2:-12902583 | MS.gene33875:CDS |
AATGGCAGTCCGGTGGCAGG+TGG | 0.589281 | 1.2:-12902797 | MS.gene33875:CDS |
GATACTGGCAAACAAACTGA+TGG | 0.591438 | 1.2:-12904358 | MS.gene33875:CDS |
TGTGGATACATGGAAGCCGC+AGG | 0.595377 | 1.2:+12902521 | None:intergenic |
CCGCATCACGTATGTTTGGA+GGG | 0.596322 | 1.2:+12907449 | None:intergenic |
CAGAGTTCCGCAAATCATCA+GGG | 0.596713 | 1.2:-12902722 | MS.gene33875:CDS |
CCAGCCCAGCAACCTAATGT+TGG | 0.596943 | 1.2:-12903330 | MS.gene33875:CDS |
ATGGGTTATGGCCAGGCTGG+TGG | 0.596992 | 1.2:-12902689 | MS.gene33875:CDS |
TGGCCATAACCCATTGCTTG+AGG | 0.597077 | 1.2:+12902698 | None:intergenic |
CTCTGTACATGACTGAATTG+AGG | 0.598943 | 1.2:+12902740 | None:intergenic |
ACCGATGAGCATATCGCTCG+TGG | 0.599653 | 1.2:+12910770 | None:intergenic |
GCAACCTGACCATTCCAGGC+AGG | 0.600024 | 1.2:+12903162 | None:intergenic |
TCGGCCGGTTGAGCTTCCCA+GGG | 0.600818 | 1.2:+12902821 | None:intergenic |
TCAGCAGTCAATAACCAGGT+TGG | 0.603323 | 1.2:-12902632 | MS.gene33875:CDS |
CATTTGCCACATTTCCATTG+GGG | 0.605378 | 1.2:+12903232 | None:intergenic |
TATTGAGGATATCTTGCCCT+CGG | 0.605821 | 1.2:+12907780 | None:intergenic |
TATGCTTATTAGGCAAGCAA+AGG | 0.611921 | 1.2:-12910066 | MS.gene33875:intron |
GAGAGATGTGCTTCATGAGA+TGG | 0.615658 | 1.2:-12907986 | MS.gene33875:CDS |
CAACACCTTGCATATGCTGA+GGG | 0.616302 | 1.2:+12902588 | None:intergenic |
TACATGCAGCCAAATGCTAA+CGG | 0.616828 | 1.2:-12902662 | MS.gene33875:CDS |
TGAGGTGGTTGTGGATACTG+AGG | 0.619141 | 1.2:+12902758 | None:intergenic |
CTTCACTTACAGTTAGTGCA+AGG | 0.620099 | 1.2:+12909988 | None:intergenic |
GGTGTTGCAGGGCACTACAT+GGG | 0.620377 | 1.2:-12902572 | MS.gene33875:CDS |
GTCAATGGTTGTGTTTGTGG+AGG | 0.621322 | 1.2:+12907478 | None:intergenic |
ATGCACCCTCAGCATATGCA+AGG | 0.632651 | 1.2:-12902593 | MS.gene33875:CDS |
ATACTGGCAAACAAACTGAT+GGG | 0.633087 | 1.2:-12904357 | MS.gene33875:CDS |
GCAACACCTTGCATATGCTG+AGG | 0.636896 | 1.2:+12902587 | None:intergenic |
TGGAAATTCAGACTCTGTAG+AGG | 0.638693 | 1.2:+12907402 | None:intergenic |
ATTCAAAGCCTGCATCTGCT+CGG | 0.639862 | 1.2:-12904420 | MS.gene33875:CDS |
GGTGGTTGTGGATACTGAGG+TGG | 0.641647 | 1.2:+12902761 | None:intergenic |
GCAGGTTGTTGTTCTCCTAG+AGG | 0.643273 | 1.2:+12903438 | None:intergenic |
TTGTCAAAGGCATAAAGAAG+CGG | 0.644081 | 1.2:-12910040 | MS.gene33875:CDS |
GATGAATCACTGCTATGCCA+GGG | 0.646115 | 1.2:-12904535 | MS.gene33875:CDS |
GCCACGAGCGATATGCTCAT+CGG | 0.646284 | 1.2:-12910771 | MS.gene33875:CDS |
GAAACAATCATAAAGAACTG+TGG | 0.650766 | 1.2:-12908036 | MS.gene33875:CDS |
CTGCCAAAGCTGATCCCAAG+TGG | 0.653739 | 1.2:-12903521 | MS.gene33875:CDS |
ACATGCTCAATCATGATCCT+GGG | 0.654067 | 1.2:-12910716 | MS.gene33875:intron |
CCACTGAGCAGGTCCCACTT+GGG | 0.655885 | 1.2:+12903507 | None:intergenic |
GCCGGTTGAGCTTCCCAGGG+AGG | 0.657704 | 1.2:+12902824 | None:intergenic |
TATGTCAGCAGTCAATAACC+AGG | 0.660036 | 1.2:-12902636 | MS.gene33875:CDS |
GTATCTCCAGTATCAACCAA+AGG | 0.662112 | 1.2:+12904376 | None:intergenic |
TCAAGCACAAGGTGGTCCTG+CGG | 0.662796 | 1.2:-12902537 | MS.gene33875:CDS |
TGCCAAAGCTGATCCCAAGT+GGG | 0.663726 | 1.2:-12903520 | MS.gene33875:CDS |
GGGGAAGCCTTCCAAGCCAG+AGG | 0.670946 | 1.2:-12902339 | MS.gene33875:CDS |
TAGAACATACAAGCAAAGAG+TGG | 0.671247 | 1.2:-12905441 | MS.gene33875:CDS |
GCAGATTGATCAGATCTCTG+AGG | 0.679477 | 1.2:+12907514 | None:intergenic |
GCCAGAGGATAAGTTATTCG+GGG | 0.692773 | 1.2:-12902324 | MS.gene33875:CDS |
GGCTGGGTATTGGCAGACGT+AGG | 0.693284 | 1.2:+12903351 | None:intergenic |
ATGGCTTCACATCAAGCACA+AGG | 0.694149 | 1.2:-12902548 | MS.gene33875:CDS |
CTGGCAAACAAACTGATGGG+AGG | 0.698540 | 1.2:-12904354 | MS.gene33875:intron |
AGAGTTCCGCAAATCATCAG+GGG | 0.699530 | 1.2:-12902721 | MS.gene33875:CDS |
TACGGTCAACAACAACAACA+GGG | 0.702741 | 1.2:-12902464 | MS.gene33875:CDS |
CCCAAGTGGGACCTGCTCAG+TGG | 0.703675 | 1.2:-12903507 | MS.gene33875:CDS |
ACTGAAATACAGAATGCACA+TGG | 0.716588 | 1.2:-12907074 | MS.gene33875:CDS |
CAGACATTCACATCTCAAGG+TGG | 0.719363 | 1.2:-12903261 | MS.gene33875:CDS |
ATTCTGATCAGATACAGGAG+TGG | 0.721539 | 1.2:+12903416 | None:intergenic |
TGTACATGACTGAATTGAGG+TGG | 0.724888 | 1.2:+12902743 | None:intergenic |
GCTTCACATCAAGCACAAGG+TGG | 0.737359 | 1.2:-12902545 | MS.gene33875:CDS |
ATACGTCTTATGTTCCATCG+GGG | 0.761345 | 1.2:-12902358 | MS.gene33875:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 12902262 | 12910817 | 12902262 | ID=MS.gene33875 |
chr1.2 | mRNA | 12902262 | 12910817 | 12902262 | ID=MS.gene33875.t1;Parent=MS.gene33875 |
chr1.2 | exon | 12910717 | 12910817 | 12910717 | ID=MS.gene33875.t1.exon1;Parent=MS.gene33875.t1 |
chr1.2 | CDS | 12910717 | 12910817 | 12910717 | ID=cds.MS.gene33875.t1;Parent=MS.gene33875.t1 |
chr1.2 | exon | 12909998 | 12910076 | 12909998 | ID=MS.gene33875.t1.exon2;Parent=MS.gene33875.t1 |
chr1.2 | CDS | 12909998 | 12910076 | 12909998 | ID=cds.MS.gene33875.t1;Parent=MS.gene33875.t1 |
chr1.2 | exon | 12907966 | 12908064 | 12907966 | ID=MS.gene33875.t1.exon3;Parent=MS.gene33875.t1 |
chr1.2 | CDS | 12907966 | 12908064 | 12907966 | ID=cds.MS.gene33875.t1;Parent=MS.gene33875.t1 |
chr1.2 | exon | 12907755 | 12907868 | 12907755 | ID=MS.gene33875.t1.exon4;Parent=MS.gene33875.t1 |
chr1.2 | CDS | 12907755 | 12907868 | 12907755 | ID=cds.MS.gene33875.t1;Parent=MS.gene33875.t1 |
chr1.2 | exon | 12907394 | 12907554 | 12907394 | ID=MS.gene33875.t1.exon5;Parent=MS.gene33875.t1 |
chr1.2 | CDS | 12907394 | 12907554 | 12907394 | ID=cds.MS.gene33875.t1;Parent=MS.gene33875.t1 |
chr1.2 | exon | 12907019 | 12907100 | 12907019 | ID=MS.gene33875.t1.exon6;Parent=MS.gene33875.t1 |
chr1.2 | CDS | 12907019 | 12907100 | 12907019 | ID=cds.MS.gene33875.t1;Parent=MS.gene33875.t1 |
chr1.2 | exon | 12905419 | 12905504 | 12905419 | ID=MS.gene33875.t1.exon7;Parent=MS.gene33875.t1 |
chr1.2 | CDS | 12905419 | 12905504 | 12905419 | ID=cds.MS.gene33875.t1;Parent=MS.gene33875.t1 |
chr1.2 | exon | 12904355 | 12904558 | 12904355 | ID=MS.gene33875.t1.exon8;Parent=MS.gene33875.t1 |
chr1.2 | CDS | 12904355 | 12904558 | 12904355 | ID=cds.MS.gene33875.t1;Parent=MS.gene33875.t1 |
chr1.2 | exon | 12903133 | 12903629 | 12903133 | ID=MS.gene33875.t1.exon9;Parent=MS.gene33875.t1 |
chr1.2 | CDS | 12903133 | 12903629 | 12903133 | ID=cds.MS.gene33875.t1;Parent=MS.gene33875.t1 |
chr1.2 | exon | 12902262 | 12902875 | 12902262 | ID=MS.gene33875.t1.exon10;Parent=MS.gene33875.t1 |
chr1.2 | CDS | 12902262 | 12902875 | 12902262 | ID=cds.MS.gene33875.t1;Parent=MS.gene33875.t1 |
Gene Sequence |
Protein sequence |