AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34507


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34507.t1 MTR_4g005900 98.966 290 3 0 1 290 1 290 0.0 592
MS.gene34507.t1 MTR_4g005900 98.276 290 3 1 1 290 1 288 0.0 583
MS.gene34507.t1 MTR_8g016140 32.950 261 143 6 35 284 20 259 1.67e-35 129
MS.gene34507.t1 MTR_5g016680 34.601 263 163 4 27 284 71 329 2.37e-35 130
MS.gene34507.t1 MTR_5g016680 35.227 264 159 6 27 284 71 328 1.44e-34 128
MS.gene34507.t1 MTR_5g016680 42.857 112 59 3 27 133 71 182 2.81e-19 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34507.t1 AT3G21215 64.952 311 86 1 1 288 1 311 1.73e-127 365
MS.gene34507.t1 AT3G21215 65.147 307 84 1 1 284 1 307 1.17e-124 359
MS.gene34507.t1 AT3G21215 65.147 307 84 1 1 284 1 307 1.17e-124 359
MS.gene34507.t1 AT3G21215 65.147 307 84 1 1 284 1 307 1.17e-124 359
MS.gene34507.t1 AT2G42240 37.313 268 144 8 24 288 38 284 6.27e-40 141
MS.gene34507.t1 AT2G42240 36.742 264 143 8 24 284 38 280 1.68e-38 137
MS.gene34507.t1 AT2G42240 36.502 263 143 8 24 283 38 279 1.94e-37 134
MS.gene34507.t1 AT3G13700 31.293 294 167 8 9 284 3 279 1.79e-32 121
MS.gene34507.t1 AT3G13700 29.260 311 167 8 9 283 3 296 7.25e-28 109

Find 98 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGCAACACCCTGTTTAT+TGG 0.156343 4.2:-93341108 MS.gene34507:CDS
TCCTCCGCCACCACCTGTTT+GGG 0.218443 4.2:-93342608 MS.gene34507:CDS
CTTGCAACACCCTGTTTATT+GGG 0.228971 4.2:-93341107 MS.gene34507:CDS
TCTCTCTCTTTAACATCTTC+TGG 0.236900 4.2:+93343422 None:intergenic
TGGAAGACCCGTTATAAATA+TGG 0.265459 4.2:+93343442 None:intergenic
AAAGCCATTCTCACCTGAAT+TGG 0.289777 4.2:+93342166 None:intergenic
ATCCTCCGCCACCACCTGTT+TGG 0.292096 4.2:-93342609 MS.gene34507:CDS
CGGCGGCGGGAGGCCATTGC+TGG 0.300285 4.2:+93343593 None:intergenic
CACCCTGTTTATTGGGAACT+TGG 0.308237 4.2:-93341100 MS.gene34507:CDS
TAGCAGTTATGTTCCAATTC+AGG 0.309823 4.2:-93342179 MS.gene34507:intron
TTAAGCAAATGAAGATTATA+AGG 0.318083 4.2:-93340915 MS.gene34507:CDS
GAAGGAATAGCGGTGGGTTG+AGG 0.329734 4.2:+93343559 None:intergenic
CTCCCAAGTTCCCAATAAAC+AGG 0.342043 4.2:+93341097 None:intergenic
GGTGCTGTTATCCCAAGTTC+TGG 0.347584 4.2:-93340722 MS.gene34507:CDS
ATAGCGGTGGGTTGAGGAGG+AGG 0.368075 4.2:+93343565 None:intergenic
GGAGGAGGAACGGCGGCGGG+AGG 0.370600 4.2:+93343583 None:intergenic
ATCCCAAGTTCTGGTTCAAT+TGG 0.381310 4.2:-93340713 MS.gene34507:CDS
GGAGGCCATTGCTGGTGGTA+AGG 0.381880 4.2:+93343601 None:intergenic
TGCTGCTAAAGATATTCTTC+AGG 0.389765 4.2:-93343291 MS.gene34507:CDS
GGCATTGGTACTTGTGCAAC+AGG 0.393304 4.2:+93342223 None:intergenic
ATGCCAATTGAACCAGAACT+TGG 0.417682 4.2:+93340710 None:intergenic
TACCCATGTGGTCCCCAAAC+AGG 0.424369 4.2:+93342595 None:intergenic
GGTTCGAACCATATTTATAA+CGG 0.432197 4.2:-93343450 MS.gene34507:CDS
TTTCAAAGCCGAAAAGCCTA+TGG 0.434501 4.2:-93343348 MS.gene34507:CDS
GGAATAGCGGTGGGTTGAGG+AGG 0.444814 4.2:+93343562 None:intergenic
CCCCAAACAGGTGGTGGCGG+AGG 0.452926 4.2:+93342607 None:intergenic
ACCCTGTTTATTGGGAACTT+GGG 0.453911 4.2:-93341099 MS.gene34507:CDS
GTTCGAACCATATTTATAAC+GGG 0.455076 4.2:-93343449 MS.gene34507:CDS
GAGGCCATTGCTGGTGGTAA+GGG 0.456679 4.2:+93343602 None:intergenic
AGGAGGAGGAGGAACGGCGG+CGG 0.458543 4.2:+93343579 None:intergenic
GGATCATACGGAGGAGGAGG+TGG 0.460265 4.2:+93342259 None:intergenic
GCCATTGCTGGTGGTAAGGG+TGG 0.461353 4.2:+93343605 None:intergenic
AACCTTTGTCGATGGTTACC+TGG 0.465772 4.2:-93343392 MS.gene34507:CDS
TCATACGGAGGAGGAGGTGG+TGG 0.465780 4.2:+93342262 None:intergenic
GGAGGAGGAGGAACGGCGGC+GGG 0.467366 4.2:+93343580 None:intergenic
GCTGGGGATTATAATCATAC+TGG 0.472133 4.2:-93342655 MS.gene34507:CDS
ATCTTCATTTGCTTAAAGCC+AGG 0.474830 4.2:+93340922 None:intergenic
AGTAAACGGTTACGAACAGC+TGG 0.481756 4.2:-93342673 MS.gene34507:CDS
GCAACAGGATAGCCTGCATA+TGG 0.482662 4.2:+93342238 None:intergenic
GTGGTAAGGGTGGATGCCGT+TGG 0.484200 4.2:+93343615 None:intergenic
TGTGGTCCCCAAACAGGTGG+TGG 0.492889 4.2:+93342601 None:intergenic
GCAAATGAAGATTATAAGGC+AGG 0.500307 4.2:-93340911 MS.gene34507:CDS
GGTGGTGGCGGAGGATGAAA+AGG 0.515482 4.2:+93342616 None:intergenic
AAATGTGCACCACAATCTGC+AGG 0.517804 4.2:-93340744 MS.gene34507:CDS
GCTTTGTAATGCAGACAACC+TGG 0.519392 4.2:-93340940 MS.gene34507:intron
AGTACTACCTCTTCGGAAGA+AGG 0.521807 4.2:+93343535 None:intergenic
GGTCCCCAAACAGGTGGTGG+CGG 0.523992 4.2:+93342604 None:intergenic
GGTGAGATAGACACAGGAGC+AGG 0.526097 4.2:+93342202 None:intergenic
TGAAGGAAGTACTACCTCTT+CGG 0.528081 4.2:+93343528 None:intergenic
CCACCTGTTTGGGGACCACA+TGG 0.534905 4.2:-93342598 MS.gene34507:CDS
TCCACCCTTACCACCAGCAA+TGG 0.538447 4.2:-93343606 MS.gene34507:CDS
AACTTCAAAACCTTTGTCGA+TGG 0.541598 4.2:-93343400 MS.gene34507:CDS
TTGAGGAGGAGGAGGAACGG+CGG 0.545717 4.2:+93343576 None:intergenic
TGAAGAACAGATTTAGCCTC+GGG 0.546026 4.2:+93343254 None:intergenic
TCCTTCTCCTTCTTCCGAAG+AGG 0.546449 4.2:-93343542 MS.gene34507:intron
TAGCCTGCATATGGATCATA+CGG 0.548541 4.2:+93342247 None:intergenic
TAAACAGGGTGTTGCAAGGA+GGG 0.548723 4.2:+93341112 None:intergenic
CGGCGGGAGGCCATTGCTGG+TGG 0.549676 4.2:+93343596 None:intergenic
GCGGTGGGTTGAGGAGGAGG+AGG 0.554704 4.2:+93343568 None:intergenic
CCTCCGCCACCACCTGTTTG+GGG 0.555676 4.2:-93342607 MS.gene34507:CDS
AACTGAGAAGCTTCAAAACC+AGG 0.556577 4.2:+93343374 None:intergenic
TTCAAAGCCGAAAAGCCTAT+GGG 0.558458 4.2:-93343347 MS.gene34507:CDS
CCTCCGTATGATCCATATGC+AGG 0.559113 4.2:-93342250 MS.gene34507:CDS
ATCTGTTCTTCATACTGAGA+TGG 0.561919 4.2:-93343243 MS.gene34507:CDS
GAAGGAGAAGGAATAGCGGT+GGG 0.564113 4.2:+93343553 None:intergenic
GATTCATTCATGGCAGCCAA+CGG 0.570409 4.2:-93343631 None:intergenic
TAACAGCACCCTGCAGATTG+TGG 0.570755 4.2:+93340735 None:intergenic
CATTAATGAGGAAGAAGTGA+GGG 0.575202 4.2:-93341070 MS.gene34507:CDS
ATGAAGAACAGATTTAGCCT+CGG 0.577945 4.2:+93343253 None:intergenic
TATGGATCATACGGAGGAGG+AGG 0.580137 4.2:+93342256 None:intergenic
ATAGACACAGGAGCAGGCAT+TGG 0.580929 4.2:+93342208 None:intergenic
GGGTTGAGGAGGAGGAGGAA+CGG 0.583208 4.2:+93343573 None:intergenic
GGCGGAGGATGAAAAGGAGA+CGG 0.593468 4.2:+93342622 None:intergenic
TGAATTGGAACATAACTGCT+AGG 0.602093 4.2:+93342181 None:intergenic
ACCTCTTCGGAAGAAGGAGA+AGG 0.602484 4.2:+93343541 None:intergenic
CCAATAAACAGGGTGTTGCA+AGG 0.603873 4.2:+93341108 None:intergenic
CTTGGGAGAGAACATTAATG+AGG 0.606113 4.2:-93341082 MS.gene34507:CDS
GCATATGGATCATACGGAGG+AGG 0.606969 4.2:+93342253 None:intergenic
TGAAGATTATAAGGCAGGAG+AGG 0.609049 4.2:-93340906 MS.gene34507:CDS
TGCCAATTGAACCAGAACTT+GGG 0.610282 4.2:+93340711 None:intergenic
TTGAAGAGAGCAAAACCCAT+AGG 0.622823 4.2:+93343332 None:intergenic
TTAGCAGCAATAGCTTGATG+AGG 0.625830 4.2:+93343305 None:intergenic
ACATTAATGAGGAAGAAGTG+AGG 0.646735 4.2:-93341071 MS.gene34507:CDS
AGAAGGAGAAGGAATAGCGG+TGG 0.646815 4.2:+93343552 None:intergenic
CCATGTGGTCCCCAAACAGG+TGG 0.654893 4.2:+93342598 None:intergenic
CACCTGTTTGGGGACCACAT+GGG 0.665991 4.2:-93342597 MS.gene34507:intron
AACCAGGTAACCATCGACAA+AGG 0.666576 4.2:+93343390 None:intergenic
TCCCAAGTTCCCAATAAACA+GGG 0.668529 4.2:+93341098 None:intergenic
TTTGTGTTAGTTTACCCATG+TGG 0.672879 4.2:+93342583 None:intergenic
GTTCTGGTTCAATTGGCATG+CGG 0.674324 4.2:-93340706 MS.gene34507:CDS
AATGTGCACCACAATCTGCA+GGG 0.681242 4.2:-93340743 MS.gene34507:CDS
GTAAACGGTTACGAACAGCT+GGG 0.684153 4.2:-93342672 MS.gene34507:CDS
TAAACGGTTACGAACAGCTG+GGG 0.691927 4.2:-93342671 MS.gene34507:CDS
CTGCTAGGTGAGATAGACAC+AGG 0.695547 4.2:+93342196 None:intergenic
ATAAACAGGGTGTTGCAAGG+AGG 0.695618 4.2:+93341111 None:intergenic
ATTAATGAGGAAGAAGTGAG+GGG 0.716298 4.2:-93341069 MS.gene34507:CDS
GGAAGAAGGAGAAGGAATAG+CGG 0.729192 4.2:+93343549 None:intergenic
CCTGCATATGGATCATACGG+AGG 0.734736 4.2:+93342250 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAAATATGATGTTTAAA+GGG - chr4.2:93342967-93342986 MS.gene34507:intron 15.0%
!! TCATTGATAAACAATATTAA+CGG + chr4.2:93343106-93343125 None:intergenic 15.0%
!!! CTTATTTTGATTTTTTTTGT+AGG - chr4.2:93341568-93341587 MS.gene34507:intron 15.0%
!!! TCAATTTTTATTCAATTATG+TGG - chr4.2:93341130-93341149 MS.gene34507:intron 15.0%
!! AATAAATAATAGAAGAGTGA+AGG + chr4.2:93340787-93340806 None:intergenic 20.0%
!! CAAACTTTCAGTTAATAATA+TGG + chr4.2:93341985-93342004 None:intergenic 20.0%
!! GGAAAAAATATGATGTTTAA+AGG - chr4.2:93342966-93342985 MS.gene34507:intron 20.0%
!! TTAAGCAAATGAAGATTATA+AGG - chr4.2:93343380-93343399 MS.gene34507:CDS 20.0%
!! TTTAGACTAAATTATGGTAT+TGG - chr4.2:93341414-93341433 MS.gene34507:intron 20.0%
!!! AATTCAATTATGCTTTTTTC+AGG - chr4.2:93340824-93340843 MS.gene34507:intron 20.0%
!!! TACAATATCCTTTTTTATTG+TGG - chr4.2:93343613-93343632 MS.gene34507:CDS 20.0%
!!! TGAAAGTTTGTTTGTTTTTA+TGG - chr4.2:93341995-93342014 MS.gene34507:intron 20.0%
!!! TTGATTTTTTTTGTAGGAAT+AGG - chr4.2:93341574-93341593 MS.gene34507:intron 20.0%
!!! TTTAAAATAATCACATGTGT+CGG + chr4.2:93341287-93341306 None:intergenic 20.0%
! AAAAATCTCTTTGTTAAACG+AGG - chr4.2:93341080-93341099 MS.gene34507:CDS 25.0%
! AAAACAATGTTGTCAAATAG+TGG - chr4.2:93341774-93341793 MS.gene34507:intron 25.0%
! AAAAGTTGGAGTAATTATTG+AGG + chr4.2:93342427-93342446 None:intergenic 25.0%
! AAAGTTGGAGTAATTATTGA+GGG + chr4.2:93342426-93342445 None:intergenic 25.0%
! ATCAATTTCTAACAGTTGAA+TGG + chr4.2:93342663-93342682 None:intergenic 25.0%
! ATTGTATCTCAAAGTGAATA+TGG - chr4.2:93342758-93342777 MS.gene34507:intron 25.0%
! GATTAATCCAATATATGACA+CGG + chr4.2:93343324-93343343 None:intergenic 25.0%
! GTCTTTCTCTAATAAAGTAA+GGG - chr4.2:93342478-93342497 MS.gene34507:intron 25.0%
! TGTCTTTCTCTAATAAAGTA+AGG - chr4.2:93342477-93342496 MS.gene34507:intron 25.0%
! TTGTATCTCAAAGTGAATAT+GGG - chr4.2:93342759-93342778 MS.gene34507:intron 25.0%
!! GTTTTTATGGTCTAGATATA+TGG - chr4.2:93342008-93342027 MS.gene34507:intron 25.0%
!! TTAAACTGTTAATGCTACTT+TGG - chr4.2:93342150-93342169 MS.gene34507:intron 25.0%
!!! AACATCATATTTTTTCCAGT+AGG + chr4.2:93342963-93342982 None:intergenic 25.0%
!!! TCTATTTTAACTACCAAAGA+AGG - chr4.2:93342875-93342894 MS.gene34507:intron 25.0%
!!! TTGCTTTTGATCAAAGTAAA+CGG - chr4.2:93341608-93341627 MS.gene34507:intron 25.0%
AAGTGACACTCATTATGAAA+CGG + chr4.2:93342326-93342345 None:intergenic 30.0%
ACATTCATTCAGCAATTTAG+AGG + chr4.2:93342921-93342940 None:intergenic 30.0%
ATTACAGAGCTTATAGCTAA+CGG + chr4.2:93342272-93342291 None:intergenic 30.0%
CGGTGATTTAGACTAAATTA+TGG - chr4.2:93341408-93341427 MS.gene34507:intron 30.0%
CGTGATTTATAAAGATAAGG+CGG - chr4.2:93342232-93342251 MS.gene34507:CDS 30.0%
CTTAATTGCTATATTCTGCT+TGG - chr4.2:93342823-93342842 MS.gene34507:intron 30.0%
CTTATGTTTACGCTAATACT+TGG - chr4.2:93343491-93343510 MS.gene34507:intron 30.0%
GAAAAGATCCAGACAATAAA+AGG + chr4.2:93343468-93343487 None:intergenic 30.0%
GCTCGTGATTTATAAAGATA+AGG - chr4.2:93342229-93342248 MS.gene34507:CDS 30.0%
GGTTCGAACCATATTTATAA+CGG - chr4.2:93340845-93340864 MS.gene34507:intron 30.0%
GTTCGAACCATATTTATAAC+GGG - chr4.2:93340846-93340865 MS.gene34507:intron 30.0%
GTTCGAAGTATATTCATAGT+TGG - chr4.2:93343009-93343028 MS.gene34507:intron 30.0%
GTTGTGAAATAGTTGCTATA+GGG - chr4.2:93341860-93341879 MS.gene34507:intron 30.0%
TCACTGCATGATAATAACTA+AGG + chr4.2:93343040-93343059 None:intergenic 30.0%
TCTTAATCTATGTGCCAAAA+TGG - chr4.2:93342545-93342564 MS.gene34507:intron 30.0%
TGTTGTGAAATAGTTGCTAT+AGG - chr4.2:93341859-93341878 MS.gene34507:intron 30.0%
TTGGATTAATCTGTTGAACT+TGG - chr4.2:93343333-93343352 MS.gene34507:CDS 30.0%
TTGGCACATAGATTAAGAAA+TGG + chr4.2:93342543-93342562 None:intergenic 30.0%
TTGTGAAATAGTTGCTATAG+GGG - chr4.2:93341861-93341880 MS.gene34507:intron 30.0%
TTTGAATTCGGAGTTAAGTT+TGG + chr4.2:93341509-93341528 None:intergenic 30.0%
! GAAAATTCTGAGAGAAAAGT+TGG + chr4.2:93342441-93342460 None:intergenic 30.0%
! GTTTTACATACACACTGAAA+AGG + chr4.2:93343252-93343271 None:intergenic 30.0%
! TATTTGTGCCTTTTATTGTC+TGG - chr4.2:93343457-93343476 MS.gene34507:intron 30.0%
!! TCATAATGAGTGTCACTTTA+GGG - chr4.2:93342328-93342347 MS.gene34507:intron 30.0%
!! TTCATAATGAGTGTCACTTT+AGG - chr4.2:93342327-93342346 MS.gene34507:intron 30.0%
!!! AGCATTTGTCTTTGTTTTGT+CGG - chr4.2:93342788-93342807 MS.gene34507:intron 30.0%
AAACGACACTCATTGTGAAA+TGG - chr4.2:93342586-93342605 MS.gene34507:intron 35.0%
AACTTCAAAACCTTTGTCGA+TGG - chr4.2:93340895-93340914 MS.gene34507:CDS 35.0%
AATCTATGTGCCAAAATGGA+GGG - chr4.2:93342549-93342568 MS.gene34507:intron 35.0%
ACATTAATGAGGAAGAAGTG+AGG - chr4.2:93343224-93343243 MS.gene34507:CDS 35.0%
ATCTCAAAGTGAATATGGGA+GGG - chr4.2:93342763-93342782 MS.gene34507:intron 35.0%
ATCTGTTCTTCATACTGAGA+TGG - chr4.2:93341052-93341071 MS.gene34507:intron 35.0%
ATCTTCATTTGCTTAAAGCC+AGG + chr4.2:93343376-93343395 None:intergenic 35.0%
ATGAAGAACAGATTTAGCCT+CGG + chr4.2:93341045-93341064 None:intergenic 35.0%
ATGTGTTATGTACATCCTAC+TGG - chr4.2:93342945-93342964 MS.gene34507:intron 35.0%
ATTAATGAGGAAGAAGTGAG+GGG - chr4.2:93343226-93343245 MS.gene34507:CDS 35.0%
ATTTGAACAAACCTCTACCT+TGG + chr4.2:93341463-93341482 None:intergenic 35.0%
CAGATGCTCCACAATAAAAA+AGG + chr4.2:93343624-93343643 None:intergenic 35.0%
CATTAATGAGGAAGAAGTGA+GGG - chr4.2:93343225-93343244 MS.gene34507:CDS 35.0%
CTAATTGCACTGAACAATAG+TGG + chr4.2:93341893-93341912 None:intergenic 35.0%
GCAAATGAAGATTATAAGGC+AGG - chr4.2:93343384-93343403 MS.gene34507:CDS 35.0%
GTAATTATTGAGGGCAAAGT+TGG + chr4.2:93342417-93342436 None:intergenic 35.0%
TAATCTATGTGCCAAAATGG+AGG - chr4.2:93342548-93342567 MS.gene34507:intron 35.0%
TAGCAGTTATGTTCCAATTC+AGG - chr4.2:93342116-93342135 MS.gene34507:intron 35.0%
TATCTCAAAGTGAATATGGG+AGG - chr4.2:93342762-93342781 MS.gene34507:intron 35.0%
TCAACTATGAATCACGTACA+AGG + chr4.2:93341359-93341378 None:intergenic 35.0%
TCTCACAATAAGTGCATGTT+TGG - chr4.2:93341380-93341399 MS.gene34507:intron 35.0%
TCTCTCTCTTTAACATCTTC+TGG + chr4.2:93340876-93340895 None:intergenic 35.0%
TCTTAGTGCGTGTTTGAATT+CGG + chr4.2:93341521-93341540 None:intergenic 35.0%
TGAATTGGAACATAACTGCT+AGG + chr4.2:93342117-93342136 None:intergenic 35.0%
TGCTGCTAAAGATATTCTTC+AGG - chr4.2:93341004-93341023 MS.gene34507:intron 35.0%
TGCTTTAATCTTGCCTTCTT+TGG + chr4.2:93342891-93342910 None:intergenic 35.0%
TGGAAGACCCGTTATAAATA+TGG + chr4.2:93340856-93340875 None:intergenic 35.0%
TTATGTGTCTGTGTCATGTT+TGG - chr4.2:93341330-93341349 MS.gene34507:intron 35.0%
TTCTATGCCGTGTCATATAT+TGG - chr4.2:93343314-93343333 MS.gene34507:CDS 35.0%
! AGAAAAACCGATATTTTCCG+CGG - chr4.2:93341911-93341930 MS.gene34507:intron 35.0%
! GGCTTGATATTTTCTCTTGT+TGG - chr4.2:93342626-93342645 MS.gene34507:CDS 35.0%
! GTAGAGGTTTGTTCAAATCA+TGG - chr4.2:93341465-93341484 MS.gene34507:intron 35.0%
! TAAGTGCATGTTTGGAATGA+CGG - chr4.2:93341388-93341407 MS.gene34507:intron 35.0%
! TTTGTGTTAGTTTACCCATG+TGG + chr4.2:93341715-93341734 None:intergenic 35.0%
!! TGTGATTTGTTGAAACTCCA+AGG - chr4.2:93341443-93341462 MS.gene34507:intron 35.0%
!! TTCACAATGAGTGTCGTTTA+AGG + chr4.2:93342585-93342604 None:intergenic 35.0%
AAAGCCATTCTCACCTGAAT+TGG + chr4.2:93342132-93342151 None:intergenic 40.0%
AACTGAGAAGCTTCAAAACC+AGG + chr4.2:93340924-93340943 None:intergenic 40.0%
AATGGAGGGAGTAGTTGAAA+AGG - chr4.2:93342604-93342623 MS.gene34507:CDS 40.0%
ACCCTGTTTATTGGGAACTT+GGG - chr4.2:93343196-93343215 MS.gene34507:intron 40.0%
ATGCCAATTGAACCAGAACT+TGG + chr4.2:93343588-93343607 None:intergenic 40.0%
ATGGAGGGAGTAGTTGAAAA+GGG - chr4.2:93342605-93342624 MS.gene34507:CDS 40.0%
CACATCCTGCAATAGGTTAT+TGG + chr4.2:93343520-93343539 None:intergenic 40.0%
CACTATTCACATCCTGCAAT+AGG + chr4.2:93343527-93343546 None:intergenic 40.0%
CTTGCAACACCCTGTTTATT+GGG - chr4.2:93343188-93343207 MS.gene34507:intron 40.0%
CTTGGGAGAGAACATTAATG+AGG - chr4.2:93343213-93343232 MS.gene34507:intron 40.0%
GACACTCATTGTGAAATGGA+GGG - chr4.2:93342590-93342609 MS.gene34507:intron 40.0%
GCTGGGGATTATAATCATAC+TGG - chr4.2:93341640-93341659 MS.gene34507:intron 40.0%
GGTATCCAATAACCTATTGC+AGG - chr4.2:93343512-93343531 MS.gene34507:intron 40.0%
TAGCCTGCATATGGATCATA+CGG + chr4.2:93342051-93342070 None:intergenic 40.0%
TCCCAAGTTCCCAATAAACA+GGG + chr4.2:93343200-93343219 None:intergenic 40.0%
TCTCAAAGTGAATATGGGAG+GGG - chr4.2:93342764-93342783 MS.gene34507:intron 40.0%
TGAAGAACAGATTTAGCCTC+GGG + chr4.2:93341044-93341063 None:intergenic 40.0%
TGAAGATTATAAGGCAGGAG+AGG - chr4.2:93343389-93343408 MS.gene34507:CDS 40.0%
TGCCAATTGAACCAGAACTT+GGG + chr4.2:93343587-93343606 None:intergenic 40.0%
TGTCAATGTCGGTATTGTGA+AGG + chr4.2:93341212-93341231 None:intergenic 40.0%
TGTTCCAATTCAGGTGAGAA+TGG - chr4.2:93342125-93342144 MS.gene34507:intron 40.0%
TTAGCAGCAATAGCTTGATG+AGG + chr4.2:93340993-93341012 None:intergenic 40.0%
TTCAAAGCCGAAAAGCCTAT+GGG - chr4.2:93340948-93340967 MS.gene34507:intron 40.0%
TTGAAGAGAGCAAAACCCAT+AGG + chr4.2:93340966-93340985 None:intergenic 40.0%
TTGTTGAAACTCCAAGGTAG+AGG - chr4.2:93341449-93341468 MS.gene34507:intron 40.0%
TTTCAAAGCCGAAAAGCCTA+TGG - chr4.2:93340947-93340966 MS.gene34507:intron 40.0%
! AGCAAAACCCATAGGCTTTT+CGG + chr4.2:93340958-93340977 None:intergenic 40.0%
!! ATCAGCAGAAGTGTCAATGT+CGG + chr4.2:93341223-93341242 None:intergenic 40.0%
!! ATCCCAAGTTCTGGTTCAAT+TGG - chr4.2:93343582-93343601 MS.gene34507:CDS 40.0%
!! TGAAGGAAGTACTACCTCTT+CGG + chr4.2:93340770-93340789 None:intergenic 40.0%
AAATGTGCACCACAATCTGC+AGG - chr4.2:93343551-93343570 MS.gene34507:CDS 45.0%
AACCAGGTAACCATCGACAA+AGG + chr4.2:93340908-93340927 None:intergenic 45.0%
AACCTTTGTCGATGGTTACC+TGG - chr4.2:93340903-93340922 MS.gene34507:CDS 45.0%
AATGTGCACCACAATCTGCA+GGG - chr4.2:93343552-93343571 MS.gene34507:CDS 45.0%
ACTGTCCTTGAAGTCCTGAA+CGG - chr4.2:93342717-93342736 MS.gene34507:intron 45.0%
AGTAAACGGTTACGAACAGC+TGG - chr4.2:93341622-93341641 MS.gene34507:intron 45.0%
AGTACTACCTCTTCGGAAGA+AGG + chr4.2:93340763-93340782 None:intergenic 45.0%
ATGTTGACAATTGCAGACCG+CGG + chr4.2:93341931-93341950 None:intergenic 45.0%
CACCCTGTTTATTGGGAACT+TGG - chr4.2:93343195-93343214 MS.gene34507:intron 45.0%
CCTTGCAACACCCTGTTTAT+TGG - chr4.2:93343187-93343206 MS.gene34507:intron 45.0%
CGACACTCATTGTGAAATGG+AGG - chr4.2:93342589-93342608 MS.gene34507:intron 45.0%
CTCCCAAGTTCCCAATAAAC+AGG + chr4.2:93343201-93343220 None:intergenic 45.0%
GAACAGAAGAGCTGTGTCAA+AGG + chr4.2:93343279-93343298 None:intergenic 45.0%
GACATTGACACTTCTGCTGA+TGG - chr4.2:93341222-93341241 MS.gene34507:intron 45.0%
GAGCTCAAAATTGCACACGA+AGG + chr4.2:93342213-93342232 None:intergenic 45.0%
GCTTTGTAATGCAGACAACC+TGG - chr4.2:93343355-93343374 MS.gene34507:CDS 45.0%
GGAAGAAGGAGAAGGAATAG+CGG + chr4.2:93340749-93340768 None:intergenic 45.0%
GTAAACGGTTACGAACAGCT+GGG - chr4.2:93341623-93341642 MS.gene34507:intron 45.0%
TAAACGGTTACGAACAGCTG+GGG - chr4.2:93341624-93341643 MS.gene34507:intron 45.0%
TTGCAGACCGCGGAAAATAT+CGG + chr4.2:93341921-93341940 None:intergenic 45.0%
! TTGTCTTTCGCCCTCCATTT+TGG + chr4.2:93342562-93342581 None:intergenic 45.0%
!! ATAAACAGGGTGTTGCAAGG+AGG + chr4.2:93343187-93343206 None:intergenic 45.0%
!! CCAATAAACAGGGTGTTGCA+AGG + chr4.2:93343190-93343209 None:intergenic 45.0%
!! GGATATGCTTTTTGATCCCG+AGG - chr4.2:93341025-93341044 MS.gene34507:intron 45.0%
!! GTTCTGGTTCAATTGGCATG+CGG - chr4.2:93343589-93343608 MS.gene34507:CDS 45.0%
!! TAAACAGGGTGTTGCAAGGA+GGG + chr4.2:93343186-93343205 None:intergenic 45.0%
ACCTCTTCGGAAGAAGGAGA+AGG + chr4.2:93340757-93340776 None:intergenic 50.0%
AGAAGGAGAAGGAATAGCGG+TGG + chr4.2:93340746-93340765 None:intergenic 50.0%
ATAGACACAGGAGCAGGCAT+TGG + chr4.2:93342090-93342109 None:intergenic 50.0%
CCTCCGTATGATCCATATGC+AGG - chr4.2:93342045-93342064 MS.gene34507:intron 50.0%
CCTGCATATGGATCATACGG+AGG + chr4.2:93342048-93342067 None:intergenic 50.0%
CTGCTAGGTGAGATAGACAC+AGG + chr4.2:93342102-93342121 None:intergenic 50.0%
CTGTCCTTGAAGTCCTGAAC+GGG - chr4.2:93342718-93342737 MS.gene34507:intron 50.0%
GAAGGAGAAGGAATAGCGGT+GGG + chr4.2:93340745-93340764 None:intergenic 50.0%
GCAACAGGATAGCCTGCATA+TGG + chr4.2:93342060-93342079 None:intergenic 50.0%
GCATATGGATCATACGGAGG+AGG + chr4.2:93342045-93342064 None:intergenic 50.0%
TAACAGCACCCTGCAGATTG+TGG + chr4.2:93343563-93343582 None:intergenic 50.0%
TATGGATCATACGGAGGAGG+AGG + chr4.2:93342042-93342061 None:intergenic 50.0%
TCCTTCTCCTTCTTCCGAAG+AGG - chr4.2:93340753-93340772 MS.gene34507:CDS 50.0%
!! GGCATTGGTACTTGTGCAAC+AGG + chr4.2:93342075-93342094 None:intergenic 50.0%
!! GGTGCTGTTATCCCAAGTTC+TGG - chr4.2:93343573-93343592 MS.gene34507:CDS 50.0%
CACCTGTTTGGGGACCACAT+GGG - chr4.2:93341698-93341717 MS.gene34507:intron 55.0%
CTGCTGATGGCAGATGTGTC+TGG - chr4.2:93341235-93341254 MS.gene34507:intron 55.0%
GAACTCTTCTGTGCCCGTTC+AGG + chr4.2:93342734-93342753 None:intergenic 55.0%
GAGGCCATTGCTGGTGGTAA+GGG + chr4.2:93340696-93340715 None:intergenic 55.0%
GGCGGAGGATGAAAAGGAGA+CGG + chr4.2:93341676-93341695 None:intergenic 55.0%
GGTGAGATAGACACAGGAGC+AGG + chr4.2:93342096-93342115 None:intergenic 55.0%
TACCCATGTGGTCCCCAAAC+AGG + chr4.2:93341703-93341722 None:intergenic 55.0%
TCCACCCTTACCACCAGCAA+TGG - chr4.2:93340689-93340708 MS.gene34507:CDS 55.0%
TGTGCCCGTTCAGGACTTCA+AGG + chr4.2:93342725-93342744 None:intergenic 55.0%
!! GAAGGAATAGCGGTGGGTTG+AGG + chr4.2:93340739-93340758 None:intergenic 55.0%
ATCCTCCGCCACCACCTGTT+TGG - chr4.2:93341686-93341705 MS.gene34507:intron 60.0%
CCACCTGTTTGGGGACCACA+TGG - chr4.2:93341697-93341716 MS.gene34507:intron 60.0%
CCATGTGGTCCCCAAACAGG+TGG + chr4.2:93341700-93341719 None:intergenic 60.0%
GCCATTGCTGGTGGTAAGGG+TGG + chr4.2:93340693-93340712 None:intergenic 60.0%
GGAGGCCATTGCTGGTGGTA+AGG + chr4.2:93340697-93340716 None:intergenic 60.0%
GGATCATACGGAGGAGGAGG+TGG + chr4.2:93342039-93342058 None:intergenic 60.0%
GGGTTGAGGAGGAGGAGGAA+CGG + chr4.2:93340725-93340744 None:intergenic 60.0%
GTGGTAAGGGTGGATGCCGT+TGG + chr4.2:93340683-93340702 None:intergenic 60.0%
TCATACGGAGGAGGAGGTGG+TGG + chr4.2:93342036-93342055 None:intergenic 60.0%
TCCTCCGCCACCACCTGTTT+GGG - chr4.2:93341687-93341706 MS.gene34507:intron 60.0%
TGTGGTCCCCAAACAGGTGG+TGG + chr4.2:93341697-93341716 None:intergenic 60.0%
TTGAGGAGGAGGAGGAACGG+CGG + chr4.2:93340722-93340741 None:intergenic 60.0%
!! ATAGCGGTGGGTTGAGGAGG+AGG + chr4.2:93340733-93340752 None:intergenic 60.0%
!! GGAATAGCGGTGGGTTGAGG+AGG + chr4.2:93340736-93340755 None:intergenic 60.0%
!! GGTGGTGGCGGAGGATGAAA+AGG + chr4.2:93341682-93341701 None:intergenic 60.0%
CCTCCGCCACCACCTGTTTG+GGG - chr4.2:93341688-93341707 MS.gene34507:intron 65.0%
! GGTCCCCAAACAGGTGGTGG+CGG + chr4.2:93341694-93341713 None:intergenic 65.0%
AGGAGGAGGAGGAACGGCGG+CGG + chr4.2:93340719-93340738 None:intergenic 70.0%
!! CCCCAAACAGGTGGTGGCGG+AGG + chr4.2:93341691-93341710 None:intergenic 70.0%
!! GCGGTGGGTTGAGGAGGAGG+AGG + chr4.2:93340730-93340749 None:intergenic 70.0%
CGGCGGGAGGCCATTGCTGG+TGG + chr4.2:93340702-93340721 None:intergenic 75.0%
GGAGGAGGAGGAACGGCGGC+GGG + chr4.2:93340718-93340737 None:intergenic 75.0%
! CGGCGGCGGGAGGCCATTGC+TGG + chr4.2:93340705-93340724 None:intergenic 80.0%
! GGAGGAGGAACGGCGGCGGG+AGG + chr4.2:93340715-93340734 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 93340673 93343644 93340673 ID=MS.gene34507
chr4.2 mRNA 93340673 93343644 93340673 ID=MS.gene34507.t1;Parent=MS.gene34507
chr4.2 exon 93343543 93343644 93343543 ID=MS.gene34507.t1.exon1;Parent=MS.gene34507.t1
chr4.2 CDS 93343543 93343644 93343543 ID=cds.MS.gene34507.t1;Parent=MS.gene34507.t1
chr4.2 exon 93343216 93343471 93343216 ID=MS.gene34507.t1.exon2;Parent=MS.gene34507.t1
chr4.2 CDS 93343216 93343471 93343216 ID=cds.MS.gene34507.t1;Parent=MS.gene34507.t1
chr4.2 exon 93342598 93342727 93342598 ID=MS.gene34507.t1.exon3;Parent=MS.gene34507.t1
chr4.2 CDS 93342598 93342727 93342598 ID=cds.MS.gene34507.t1;Parent=MS.gene34507.t1
chr4.2 exon 93342180 93342294 93342180 ID=MS.gene34507.t1.exon4;Parent=MS.gene34507.t1
chr4.2 CDS 93342180 93342294 93342180 ID=cds.MS.gene34507.t1;Parent=MS.gene34507.t1
chr4.2 exon 93341057 93341148 93341057 ID=MS.gene34507.t1.exon5;Parent=MS.gene34507.t1
chr4.2 CDS 93341057 93341148 93341057 ID=cds.MS.gene34507.t1;Parent=MS.gene34507.t1
chr4.2 exon 93340879 93340948 93340879 ID=MS.gene34507.t1.exon6;Parent=MS.gene34507.t1
chr4.2 CDS 93340879 93340948 93340879 ID=cds.MS.gene34507.t1;Parent=MS.gene34507.t1
chr4.2 exon 93340673 93340783 93340673 ID=MS.gene34507.t1.exon7;Parent=MS.gene34507.t1
chr4.2 CDS 93340673 93340783 93340673 ID=cds.MS.gene34507.t1;Parent=MS.gene34507.t1
Gene Sequence

>MS.gene34507

ATGGCAGCCAACGGCATCCACCCTTACCACCAGCAATGGCCTCCCGCCGCCGTTCCTCCTCCTCCTCAACCCACCGCTATTCCTTCTCCTTCTTCCGAAGAGGTAGTACTTCCTTCACTCTTCTATTATTTATTTCAATTCAATTCAATTCAATTCAATTATGCTTTTTTCAGGTTCGAACCATATTTATAACGGGTCTTCCAGAAGATGTTAAAGAGAGAGAACTTCAAAACCTTTGTCGATGGTTACCTGGTTTTGAAGCTTCTCAGTTGAATTTCAAAGCCGAAAAGCCTATGGGTTTTGCTCTCTTCAATTCTCCTCATCAAGCTATTGCTGCTAAAGATATTCTTCAGGATATGCTTTTTGATCCCGAGGCTAAATCTGTTCTTCATACTGAGATGGCTAAGAAAAATCTCTTTGTTAAACGAGGTCATAATTCAATTCAATTCAATTCAATTCAATTTTTATTCAATTATGTGGCACTGTTACTACTTCTGATCGAAGACATGACTCAAGTGTCTAGTGTCTGACAATCACCTTCACAATACCGACATTGACACTTCTGCTGATGGCAGATGTGTCTGGTTTTTGACATGTATCACTGTCTCATACCGACACATGTGATTATTTTAAATTAAATTATGTTATTTTCTCAAATTATGTGTCTGTGTCATGTTTGGTTTCCTTGTACGTGATTCATAGTTGAATCTCACAATAAGTGCATGTTTGGAATGACGGTGATTTAGACTAAATTATGGTATTGGTGATACTGTGATTTGTTGAAACTCCAAGGTAGAGGTTTGTTCAAATCATGGTGACACACTGTGATTCTGCCAAACTTAACTCCGAATTCAAACACGCACTAAGACATTTCATTGTAAATTATATAAGTTTACTTATTTTGATTTTTTTTGTAGGAATAGGAGCTGATGCAGTTGCTTTTGATCAAAGTAAACGGTTACGAACAGCTGGGGATTATAATCATACTGGTTATGTAACTCCGTCTCCTTTTCATCCTCCGCCACCACCTGTTTGGGGACCACATGGGTAAACTAACACAAACATCATCTATATATGTGTGTGTGTGACATATGATATGTAAAAACAATGTTGTCAAATAGTGGCTATAGCGTAGCAGAATTTGAACAACTCACTATTGTTTCGTGATTTGCTATTTAGTACAAAATGTTGTGAAATAGTTGCTATAGGGGATTATACCACTATTGTTCAGTGCAATTAGAAAAACCGATATTTTCCGCGGTCTGCAATTGTCAACATTGATAAAAAAAAAAAAAAATTGTTTGTTTCTCCATATTATTAACTGAAAGTTTGTTTGTTTTTATGGTCTAGATATATGGCTCCACCACCTCCTCCTCCGTATGATCCATATGCAGGCTATCCTGTTGCACAAGTACCAATGCCTGCTCCTGTGTCTATCTCACCTAGCAGTTATGTTCCAATTCAGGTGAGAATGGCTTTAAACTGTTAATGCTACTTTGGTTTCACTCATCTTCATGTCAATTGTTATATCATTACTCCTTCGTGTGCAATTTTGAGCTCGTGATTTATAAAGATAAGGCGGAATTTTTTAATATTCCGTTAGCTATAAGCTCTGTAATGTTTGCTTGTATGTCTTTTGTTTTACTCTTTCCGTTTCATAATGAGTGTCACTTTAGGGAAAAAAAATTTGTTTCAAAATGAATGTCACTTTACATTTTCAATGCAACTTTAATTTATTTTTCCAACTTTGCCCTCAATAATTACTCCAACTTTTCTCTCAGAATTTTCAATGCAACTTTAAGTTTGTCTTTCTCTAATAAAGTAAGGGTAGTTTAGTAAAAGTGTTATGTCTATTAATTATTTCATTCCATTTCTTAATCTATGTGCCAAAATGGAGGGCGAAAGACAACCTTAAACGACACTCATTGTGAAATGGAGGGAGTAGTTGAAAAGGGCTTGATATTTTCTCTTGTTGGTATAATTATTACCATTCAACTGTTAGAAATTGATCACGCAACTTATCTACTTATTAATGTGCTCATGAACTGTCCTTGAAGTCCTGAACGGGCACAGAAGAGTTCTAAAATTGTATCTCAAAGTGAATATGGGAGGGGAAGCATTTGTCTTTGTTTTGTCGGATGTCTTGTTGACTTAATTGCTATATTCTGCTTGGATTTAGAATCATATTTTAAAGATTACATCTCTATTTTAACTACCAAAGAAGGCAAGATTAAAGCAACTAATACCTCTAAATTGCTGAATGAATGTTTAAATGTGTTATGTACATCCTACTGGAAAAAATATGATGTTTAAAGGGTCAAACAGAAGTATTATTTGTTCGAAGTATATTCATAGTTGGTTTTACCTTAGTTATTATCATGCAGTGATGTTTGTTTTGCTCTGTTATCTAATAAATGTTTTTTTATACTTCCGTTAATATTGTTTATCAATGATAGATATTGAATGCAATGTGTTAACATTAAATTTTCTGTACAGAACACTAAAGATAACCCTCCTTGCAACACCCTGTTTATTGGGAACTTGGGAGAGAACATTAATGAGGAAGAAGTGAGGGGCCTTTTCAGTGTGTATGTAAAACTTATCCTTTGACACAGCTCTTCTGTTCAGTTTATGTAGCATTTTCTATGCCGTGTCATATATTGGATTAATCTGTTGAACTTGGCTTTGTAATGCAGACAACCTGGCTTTAAGCAAATGAAGATTATAAGGCAGGAGAGGCATACAGTTTGCTTCATTGAGTTTGAAGTCTGTAAACTTTGTTCATATTTGTGCCTTTTATTGTCTGGATCTTTTCTGACTTATGTTTACGCTAATACTTGGTATCCAATAACCTATTGCAGGATGTGAATAGTGCTACAAATGTGCACCACAATCTGCAGGGTGCTGTTATCCCAAGTTCTGGTTCAATTGGCATGCGGATACAATATCCTTTTTTATTGTGGAGCATCTGA

Protein sequence

>MS.gene34507.t1

MAANGIHPYHQQWPPAAVPPPPQPTAIPSPSSEEVRTIFITGLPEDVKERELQNLCRWLPGFEASQLNFKAEKPMGFALFNSPHQAIAAKDILQDMLFDPEAKSVLHTEMAKKNLFVKRGIGADAVAFDQSKRLRTAGDYNHTGYVTPSPFHPPPPPVWGPHGYMAPPPPPPYDPYAGYPVAQVPMPAPVSISPSSYVPIQNTKDNPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKIIRQERHTVCFIEFEDVNSATNVHHNLQGAVIPSSGSIGMRIQYPFLLWSI