Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34507.t1 | AES86339.2 | 96.6 | 290 | 10 | 0 | 1 | 290 | 1 | 290 | 1.30E-134 | 489.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34507.t1 | Q8VC52 | 46.5 | 86 | 46 | 0 | 29 | 114 | 18 | 103 | 1.0e-13 | 79.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34507.t1 | G7JVK2 | 96.6 | 290 | 10 | 0 | 1 | 290 | 1 | 290 | 9.6e-135 | 489.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049680 | MS.gene34507 | -0.829564 | 4.80E-55 | -1.69E-46 |
MS.gene05029 | MS.gene34507 | -0.823642 | 1.24E-53 | -1.69E-46 |
MS.gene050752 | MS.gene34507 | -0.825302 | 5.05E-54 | -1.69E-46 |
MS.gene050838 | MS.gene34507 | -0.805443 | 1.33E-49 | -1.69E-46 |
MS.gene050955 | MS.gene34507 | -0.831234 | 1.87E-55 | -1.69E-46 |
MS.gene051003 | MS.gene34507 | -0.803555 | 3.30E-49 | -1.69E-46 |
MS.gene051033 | MS.gene34507 | 0.838321 | 3.08E-57 | -1.69E-46 |
MS.gene051903 | MS.gene34507 | -0.814332 | 1.63E-51 | -1.69E-46 |
MS.gene052296 | MS.gene34507 | -0.811332 | 7.38E-51 | -1.69E-46 |
MS.gene054403 | MS.gene34507 | -0.830111 | 3.53E-55 | -1.69E-46 |
MS.gene055555 | MS.gene34507 | -0.806563 | 7.74E-50 | -1.69E-46 |
MS.gene057102 | MS.gene34507 | -0.820929 | 5.29E-53 | -1.69E-46 |
MS.gene057130 | MS.gene34507 | -0.812716 | 3.69E-51 | -1.69E-46 |
MS.gene057705 | MS.gene34507 | -0.816624 | 5.02E-52 | -1.69E-46 |
MS.gene057999 | MS.gene34507 | -0.816705 | 4.82E-52 | -1.69E-46 |
MS.gene058074 | MS.gene34507 | -0.805738 | 1.15E-49 | -1.69E-46 |
MS.gene058592 | MS.gene34507 | -0.802511 | 5.42E-49 | -1.69E-46 |
MS.gene05985 | MS.gene34507 | 0.812838 | 3.47E-51 | -1.69E-46 |
MS.gene059901 | MS.gene34507 | 0.823551 | 1.30E-53 | -1.69E-46 |
MS.gene06011 | MS.gene34507 | -0.821608 | 3.69E-53 | -1.69E-46 |
MS.gene060763 | MS.gene34507 | -0.815143 | 1.08E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34507.t1 | MTR_4g005900 | 98.966 | 290 | 3 | 0 | 1 | 290 | 1 | 290 | 0.0 | 592 |
MS.gene34507.t1 | MTR_4g005900 | 98.276 | 290 | 3 | 1 | 1 | 290 | 1 | 288 | 0.0 | 583 |
MS.gene34507.t1 | MTR_8g016140 | 32.950 | 261 | 143 | 6 | 35 | 284 | 20 | 259 | 1.67e-35 | 129 |
MS.gene34507.t1 | MTR_5g016680 | 34.601 | 263 | 163 | 4 | 27 | 284 | 71 | 329 | 2.37e-35 | 130 |
MS.gene34507.t1 | MTR_5g016680 | 35.227 | 264 | 159 | 6 | 27 | 284 | 71 | 328 | 1.44e-34 | 128 |
MS.gene34507.t1 | MTR_5g016680 | 42.857 | 112 | 59 | 3 | 27 | 133 | 71 | 182 | 2.81e-19 | 85.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34507.t1 | AT3G21215 | 64.952 | 311 | 86 | 1 | 1 | 288 | 1 | 311 | 1.73e-127 | 365 |
MS.gene34507.t1 | AT3G21215 | 65.147 | 307 | 84 | 1 | 1 | 284 | 1 | 307 | 1.17e-124 | 359 |
MS.gene34507.t1 | AT3G21215 | 65.147 | 307 | 84 | 1 | 1 | 284 | 1 | 307 | 1.17e-124 | 359 |
MS.gene34507.t1 | AT3G21215 | 65.147 | 307 | 84 | 1 | 1 | 284 | 1 | 307 | 1.17e-124 | 359 |
MS.gene34507.t1 | AT2G42240 | 37.313 | 268 | 144 | 8 | 24 | 288 | 38 | 284 | 6.27e-40 | 141 |
MS.gene34507.t1 | AT2G42240 | 36.742 | 264 | 143 | 8 | 24 | 284 | 38 | 280 | 1.68e-38 | 137 |
MS.gene34507.t1 | AT2G42240 | 36.502 | 263 | 143 | 8 | 24 | 283 | 38 | 279 | 1.94e-37 | 134 |
MS.gene34507.t1 | AT3G13700 | 31.293 | 294 | 167 | 8 | 9 | 284 | 3 | 279 | 1.79e-32 | 121 |
MS.gene34507.t1 | AT3G13700 | 29.260 | 311 | 167 | 8 | 9 | 283 | 3 | 296 | 7.25e-28 | 109 |
Find 98 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTGCAACACCCTGTTTAT+TGG | 0.156343 | 4.2:-93341108 | MS.gene34507:CDS |
TCCTCCGCCACCACCTGTTT+GGG | 0.218443 | 4.2:-93342608 | MS.gene34507:CDS |
CTTGCAACACCCTGTTTATT+GGG | 0.228971 | 4.2:-93341107 | MS.gene34507:CDS |
TCTCTCTCTTTAACATCTTC+TGG | 0.236900 | 4.2:+93343422 | None:intergenic |
TGGAAGACCCGTTATAAATA+TGG | 0.265459 | 4.2:+93343442 | None:intergenic |
AAAGCCATTCTCACCTGAAT+TGG | 0.289777 | 4.2:+93342166 | None:intergenic |
ATCCTCCGCCACCACCTGTT+TGG | 0.292096 | 4.2:-93342609 | MS.gene34507:CDS |
CGGCGGCGGGAGGCCATTGC+TGG | 0.300285 | 4.2:+93343593 | None:intergenic |
CACCCTGTTTATTGGGAACT+TGG | 0.308237 | 4.2:-93341100 | MS.gene34507:CDS |
TAGCAGTTATGTTCCAATTC+AGG | 0.309823 | 4.2:-93342179 | MS.gene34507:intron |
TTAAGCAAATGAAGATTATA+AGG | 0.318083 | 4.2:-93340915 | MS.gene34507:CDS |
GAAGGAATAGCGGTGGGTTG+AGG | 0.329734 | 4.2:+93343559 | None:intergenic |
CTCCCAAGTTCCCAATAAAC+AGG | 0.342043 | 4.2:+93341097 | None:intergenic |
GGTGCTGTTATCCCAAGTTC+TGG | 0.347584 | 4.2:-93340722 | MS.gene34507:CDS |
ATAGCGGTGGGTTGAGGAGG+AGG | 0.368075 | 4.2:+93343565 | None:intergenic |
GGAGGAGGAACGGCGGCGGG+AGG | 0.370600 | 4.2:+93343583 | None:intergenic |
ATCCCAAGTTCTGGTTCAAT+TGG | 0.381310 | 4.2:-93340713 | MS.gene34507:CDS |
GGAGGCCATTGCTGGTGGTA+AGG | 0.381880 | 4.2:+93343601 | None:intergenic |
TGCTGCTAAAGATATTCTTC+AGG | 0.389765 | 4.2:-93343291 | MS.gene34507:CDS |
GGCATTGGTACTTGTGCAAC+AGG | 0.393304 | 4.2:+93342223 | None:intergenic |
ATGCCAATTGAACCAGAACT+TGG | 0.417682 | 4.2:+93340710 | None:intergenic |
TACCCATGTGGTCCCCAAAC+AGG | 0.424369 | 4.2:+93342595 | None:intergenic |
GGTTCGAACCATATTTATAA+CGG | 0.432197 | 4.2:-93343450 | MS.gene34507:CDS |
TTTCAAAGCCGAAAAGCCTA+TGG | 0.434501 | 4.2:-93343348 | MS.gene34507:CDS |
GGAATAGCGGTGGGTTGAGG+AGG | 0.444814 | 4.2:+93343562 | None:intergenic |
CCCCAAACAGGTGGTGGCGG+AGG | 0.452926 | 4.2:+93342607 | None:intergenic |
ACCCTGTTTATTGGGAACTT+GGG | 0.453911 | 4.2:-93341099 | MS.gene34507:CDS |
GTTCGAACCATATTTATAAC+GGG | 0.455076 | 4.2:-93343449 | MS.gene34507:CDS |
GAGGCCATTGCTGGTGGTAA+GGG | 0.456679 | 4.2:+93343602 | None:intergenic |
AGGAGGAGGAGGAACGGCGG+CGG | 0.458543 | 4.2:+93343579 | None:intergenic |
GGATCATACGGAGGAGGAGG+TGG | 0.460265 | 4.2:+93342259 | None:intergenic |
GCCATTGCTGGTGGTAAGGG+TGG | 0.461353 | 4.2:+93343605 | None:intergenic |
AACCTTTGTCGATGGTTACC+TGG | 0.465772 | 4.2:-93343392 | MS.gene34507:CDS |
TCATACGGAGGAGGAGGTGG+TGG | 0.465780 | 4.2:+93342262 | None:intergenic |
GGAGGAGGAGGAACGGCGGC+GGG | 0.467366 | 4.2:+93343580 | None:intergenic |
GCTGGGGATTATAATCATAC+TGG | 0.472133 | 4.2:-93342655 | MS.gene34507:CDS |
ATCTTCATTTGCTTAAAGCC+AGG | 0.474830 | 4.2:+93340922 | None:intergenic |
AGTAAACGGTTACGAACAGC+TGG | 0.481756 | 4.2:-93342673 | MS.gene34507:CDS |
GCAACAGGATAGCCTGCATA+TGG | 0.482662 | 4.2:+93342238 | None:intergenic |
GTGGTAAGGGTGGATGCCGT+TGG | 0.484200 | 4.2:+93343615 | None:intergenic |
TGTGGTCCCCAAACAGGTGG+TGG | 0.492889 | 4.2:+93342601 | None:intergenic |
GCAAATGAAGATTATAAGGC+AGG | 0.500307 | 4.2:-93340911 | MS.gene34507:CDS |
GGTGGTGGCGGAGGATGAAA+AGG | 0.515482 | 4.2:+93342616 | None:intergenic |
AAATGTGCACCACAATCTGC+AGG | 0.517804 | 4.2:-93340744 | MS.gene34507:CDS |
GCTTTGTAATGCAGACAACC+TGG | 0.519392 | 4.2:-93340940 | MS.gene34507:intron |
AGTACTACCTCTTCGGAAGA+AGG | 0.521807 | 4.2:+93343535 | None:intergenic |
GGTCCCCAAACAGGTGGTGG+CGG | 0.523992 | 4.2:+93342604 | None:intergenic |
GGTGAGATAGACACAGGAGC+AGG | 0.526097 | 4.2:+93342202 | None:intergenic |
TGAAGGAAGTACTACCTCTT+CGG | 0.528081 | 4.2:+93343528 | None:intergenic |
CCACCTGTTTGGGGACCACA+TGG | 0.534905 | 4.2:-93342598 | MS.gene34507:CDS |
TCCACCCTTACCACCAGCAA+TGG | 0.538447 | 4.2:-93343606 | MS.gene34507:CDS |
AACTTCAAAACCTTTGTCGA+TGG | 0.541598 | 4.2:-93343400 | MS.gene34507:CDS |
TTGAGGAGGAGGAGGAACGG+CGG | 0.545717 | 4.2:+93343576 | None:intergenic |
TGAAGAACAGATTTAGCCTC+GGG | 0.546026 | 4.2:+93343254 | None:intergenic |
TCCTTCTCCTTCTTCCGAAG+AGG | 0.546449 | 4.2:-93343542 | MS.gene34507:intron |
TAGCCTGCATATGGATCATA+CGG | 0.548541 | 4.2:+93342247 | None:intergenic |
TAAACAGGGTGTTGCAAGGA+GGG | 0.548723 | 4.2:+93341112 | None:intergenic |
CGGCGGGAGGCCATTGCTGG+TGG | 0.549676 | 4.2:+93343596 | None:intergenic |
GCGGTGGGTTGAGGAGGAGG+AGG | 0.554704 | 4.2:+93343568 | None:intergenic |
CCTCCGCCACCACCTGTTTG+GGG | 0.555676 | 4.2:-93342607 | MS.gene34507:CDS |
AACTGAGAAGCTTCAAAACC+AGG | 0.556577 | 4.2:+93343374 | None:intergenic |
TTCAAAGCCGAAAAGCCTAT+GGG | 0.558458 | 4.2:-93343347 | MS.gene34507:CDS |
CCTCCGTATGATCCATATGC+AGG | 0.559113 | 4.2:-93342250 | MS.gene34507:CDS |
ATCTGTTCTTCATACTGAGA+TGG | 0.561919 | 4.2:-93343243 | MS.gene34507:CDS |
GAAGGAGAAGGAATAGCGGT+GGG | 0.564113 | 4.2:+93343553 | None:intergenic |
GATTCATTCATGGCAGCCAA+CGG | 0.570409 | 4.2:-93343631 | None:intergenic |
TAACAGCACCCTGCAGATTG+TGG | 0.570755 | 4.2:+93340735 | None:intergenic |
CATTAATGAGGAAGAAGTGA+GGG | 0.575202 | 4.2:-93341070 | MS.gene34507:CDS |
ATGAAGAACAGATTTAGCCT+CGG | 0.577945 | 4.2:+93343253 | None:intergenic |
TATGGATCATACGGAGGAGG+AGG | 0.580137 | 4.2:+93342256 | None:intergenic |
ATAGACACAGGAGCAGGCAT+TGG | 0.580929 | 4.2:+93342208 | None:intergenic |
GGGTTGAGGAGGAGGAGGAA+CGG | 0.583208 | 4.2:+93343573 | None:intergenic |
GGCGGAGGATGAAAAGGAGA+CGG | 0.593468 | 4.2:+93342622 | None:intergenic |
TGAATTGGAACATAACTGCT+AGG | 0.602093 | 4.2:+93342181 | None:intergenic |
ACCTCTTCGGAAGAAGGAGA+AGG | 0.602484 | 4.2:+93343541 | None:intergenic |
CCAATAAACAGGGTGTTGCA+AGG | 0.603873 | 4.2:+93341108 | None:intergenic |
CTTGGGAGAGAACATTAATG+AGG | 0.606113 | 4.2:-93341082 | MS.gene34507:CDS |
GCATATGGATCATACGGAGG+AGG | 0.606969 | 4.2:+93342253 | None:intergenic |
TGAAGATTATAAGGCAGGAG+AGG | 0.609049 | 4.2:-93340906 | MS.gene34507:CDS |
TGCCAATTGAACCAGAACTT+GGG | 0.610282 | 4.2:+93340711 | None:intergenic |
TTGAAGAGAGCAAAACCCAT+AGG | 0.622823 | 4.2:+93343332 | None:intergenic |
TTAGCAGCAATAGCTTGATG+AGG | 0.625830 | 4.2:+93343305 | None:intergenic |
ACATTAATGAGGAAGAAGTG+AGG | 0.646735 | 4.2:-93341071 | MS.gene34507:CDS |
AGAAGGAGAAGGAATAGCGG+TGG | 0.646815 | 4.2:+93343552 | None:intergenic |
CCATGTGGTCCCCAAACAGG+TGG | 0.654893 | 4.2:+93342598 | None:intergenic |
CACCTGTTTGGGGACCACAT+GGG | 0.665991 | 4.2:-93342597 | MS.gene34507:intron |
AACCAGGTAACCATCGACAA+AGG | 0.666576 | 4.2:+93343390 | None:intergenic |
TCCCAAGTTCCCAATAAACA+GGG | 0.668529 | 4.2:+93341098 | None:intergenic |
TTTGTGTTAGTTTACCCATG+TGG | 0.672879 | 4.2:+93342583 | None:intergenic |
GTTCTGGTTCAATTGGCATG+CGG | 0.674324 | 4.2:-93340706 | MS.gene34507:CDS |
AATGTGCACCACAATCTGCA+GGG | 0.681242 | 4.2:-93340743 | MS.gene34507:CDS |
GTAAACGGTTACGAACAGCT+GGG | 0.684153 | 4.2:-93342672 | MS.gene34507:CDS |
TAAACGGTTACGAACAGCTG+GGG | 0.691927 | 4.2:-93342671 | MS.gene34507:CDS |
CTGCTAGGTGAGATAGACAC+AGG | 0.695547 | 4.2:+93342196 | None:intergenic |
ATAAACAGGGTGTTGCAAGG+AGG | 0.695618 | 4.2:+93341111 | None:intergenic |
ATTAATGAGGAAGAAGTGAG+GGG | 0.716298 | 4.2:-93341069 | MS.gene34507:CDS |
GGAAGAAGGAGAAGGAATAG+CGG | 0.729192 | 4.2:+93343549 | None:intergenic |
CCTGCATATGGATCATACGG+AGG | 0.734736 | 4.2:+93342250 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GAAAAAATATGATGTTTAAA+GGG | - | chr4.2:93342967-93342986 | MS.gene34507:intron | 15.0% |
!! | TCATTGATAAACAATATTAA+CGG | + | chr4.2:93343106-93343125 | None:intergenic | 15.0% |
!!! | CTTATTTTGATTTTTTTTGT+AGG | - | chr4.2:93341568-93341587 | MS.gene34507:intron | 15.0% |
!!! | TCAATTTTTATTCAATTATG+TGG | - | chr4.2:93341130-93341149 | MS.gene34507:intron | 15.0% |
!! | AATAAATAATAGAAGAGTGA+AGG | + | chr4.2:93340787-93340806 | None:intergenic | 20.0% |
!! | CAAACTTTCAGTTAATAATA+TGG | + | chr4.2:93341985-93342004 | None:intergenic | 20.0% |
!! | GGAAAAAATATGATGTTTAA+AGG | - | chr4.2:93342966-93342985 | MS.gene34507:intron | 20.0% |
!! | TTAAGCAAATGAAGATTATA+AGG | - | chr4.2:93343380-93343399 | MS.gene34507:CDS | 20.0% |
!! | TTTAGACTAAATTATGGTAT+TGG | - | chr4.2:93341414-93341433 | MS.gene34507:intron | 20.0% |
!!! | AATTCAATTATGCTTTTTTC+AGG | - | chr4.2:93340824-93340843 | MS.gene34507:intron | 20.0% |
!!! | TACAATATCCTTTTTTATTG+TGG | - | chr4.2:93343613-93343632 | MS.gene34507:CDS | 20.0% |
!!! | TGAAAGTTTGTTTGTTTTTA+TGG | - | chr4.2:93341995-93342014 | MS.gene34507:intron | 20.0% |
!!! | TTGATTTTTTTTGTAGGAAT+AGG | - | chr4.2:93341574-93341593 | MS.gene34507:intron | 20.0% |
!!! | TTTAAAATAATCACATGTGT+CGG | + | chr4.2:93341287-93341306 | None:intergenic | 20.0% |
! | AAAAATCTCTTTGTTAAACG+AGG | - | chr4.2:93341080-93341099 | MS.gene34507:CDS | 25.0% |
! | AAAACAATGTTGTCAAATAG+TGG | - | chr4.2:93341774-93341793 | MS.gene34507:intron | 25.0% |
! | AAAAGTTGGAGTAATTATTG+AGG | + | chr4.2:93342427-93342446 | None:intergenic | 25.0% |
! | AAAGTTGGAGTAATTATTGA+GGG | + | chr4.2:93342426-93342445 | None:intergenic | 25.0% |
! | ATCAATTTCTAACAGTTGAA+TGG | + | chr4.2:93342663-93342682 | None:intergenic | 25.0% |
! | ATTGTATCTCAAAGTGAATA+TGG | - | chr4.2:93342758-93342777 | MS.gene34507:intron | 25.0% |
! | GATTAATCCAATATATGACA+CGG | + | chr4.2:93343324-93343343 | None:intergenic | 25.0% |
! | GTCTTTCTCTAATAAAGTAA+GGG | - | chr4.2:93342478-93342497 | MS.gene34507:intron | 25.0% |
! | TGTCTTTCTCTAATAAAGTA+AGG | - | chr4.2:93342477-93342496 | MS.gene34507:intron | 25.0% |
! | TTGTATCTCAAAGTGAATAT+GGG | - | chr4.2:93342759-93342778 | MS.gene34507:intron | 25.0% |
!! | GTTTTTATGGTCTAGATATA+TGG | - | chr4.2:93342008-93342027 | MS.gene34507:intron | 25.0% |
!! | TTAAACTGTTAATGCTACTT+TGG | - | chr4.2:93342150-93342169 | MS.gene34507:intron | 25.0% |
!!! | AACATCATATTTTTTCCAGT+AGG | + | chr4.2:93342963-93342982 | None:intergenic | 25.0% |
!!! | TCTATTTTAACTACCAAAGA+AGG | - | chr4.2:93342875-93342894 | MS.gene34507:intron | 25.0% |
!!! | TTGCTTTTGATCAAAGTAAA+CGG | - | chr4.2:93341608-93341627 | MS.gene34507:intron | 25.0% |
AAGTGACACTCATTATGAAA+CGG | + | chr4.2:93342326-93342345 | None:intergenic | 30.0% | |
ACATTCATTCAGCAATTTAG+AGG | + | chr4.2:93342921-93342940 | None:intergenic | 30.0% | |
ATTACAGAGCTTATAGCTAA+CGG | + | chr4.2:93342272-93342291 | None:intergenic | 30.0% | |
CGGTGATTTAGACTAAATTA+TGG | - | chr4.2:93341408-93341427 | MS.gene34507:intron | 30.0% | |
CGTGATTTATAAAGATAAGG+CGG | - | chr4.2:93342232-93342251 | MS.gene34507:CDS | 30.0% | |
CTTAATTGCTATATTCTGCT+TGG | - | chr4.2:93342823-93342842 | MS.gene34507:intron | 30.0% | |
CTTATGTTTACGCTAATACT+TGG | - | chr4.2:93343491-93343510 | MS.gene34507:intron | 30.0% | |
GAAAAGATCCAGACAATAAA+AGG | + | chr4.2:93343468-93343487 | None:intergenic | 30.0% | |
GCTCGTGATTTATAAAGATA+AGG | - | chr4.2:93342229-93342248 | MS.gene34507:CDS | 30.0% | |
GGTTCGAACCATATTTATAA+CGG | - | chr4.2:93340845-93340864 | MS.gene34507:intron | 30.0% | |
GTTCGAACCATATTTATAAC+GGG | - | chr4.2:93340846-93340865 | MS.gene34507:intron | 30.0% | |
GTTCGAAGTATATTCATAGT+TGG | - | chr4.2:93343009-93343028 | MS.gene34507:intron | 30.0% | |
GTTGTGAAATAGTTGCTATA+GGG | - | chr4.2:93341860-93341879 | MS.gene34507:intron | 30.0% | |
TCACTGCATGATAATAACTA+AGG | + | chr4.2:93343040-93343059 | None:intergenic | 30.0% | |
TCTTAATCTATGTGCCAAAA+TGG | - | chr4.2:93342545-93342564 | MS.gene34507:intron | 30.0% | |
TGTTGTGAAATAGTTGCTAT+AGG | - | chr4.2:93341859-93341878 | MS.gene34507:intron | 30.0% | |
TTGGATTAATCTGTTGAACT+TGG | - | chr4.2:93343333-93343352 | MS.gene34507:CDS | 30.0% | |
TTGGCACATAGATTAAGAAA+TGG | + | chr4.2:93342543-93342562 | None:intergenic | 30.0% | |
TTGTGAAATAGTTGCTATAG+GGG | - | chr4.2:93341861-93341880 | MS.gene34507:intron | 30.0% | |
TTTGAATTCGGAGTTAAGTT+TGG | + | chr4.2:93341509-93341528 | None:intergenic | 30.0% | |
! | GAAAATTCTGAGAGAAAAGT+TGG | + | chr4.2:93342441-93342460 | None:intergenic | 30.0% |
! | GTTTTACATACACACTGAAA+AGG | + | chr4.2:93343252-93343271 | None:intergenic | 30.0% |
! | TATTTGTGCCTTTTATTGTC+TGG | - | chr4.2:93343457-93343476 | MS.gene34507:intron | 30.0% |
!! | TCATAATGAGTGTCACTTTA+GGG | - | chr4.2:93342328-93342347 | MS.gene34507:intron | 30.0% |
!! | TTCATAATGAGTGTCACTTT+AGG | - | chr4.2:93342327-93342346 | MS.gene34507:intron | 30.0% |
!!! | AGCATTTGTCTTTGTTTTGT+CGG | - | chr4.2:93342788-93342807 | MS.gene34507:intron | 30.0% |
AAACGACACTCATTGTGAAA+TGG | - | chr4.2:93342586-93342605 | MS.gene34507:intron | 35.0% | |
AACTTCAAAACCTTTGTCGA+TGG | - | chr4.2:93340895-93340914 | MS.gene34507:CDS | 35.0% | |
AATCTATGTGCCAAAATGGA+GGG | - | chr4.2:93342549-93342568 | MS.gene34507:intron | 35.0% | |
ACATTAATGAGGAAGAAGTG+AGG | - | chr4.2:93343224-93343243 | MS.gene34507:CDS | 35.0% | |
ATCTCAAAGTGAATATGGGA+GGG | - | chr4.2:93342763-93342782 | MS.gene34507:intron | 35.0% | |
ATCTGTTCTTCATACTGAGA+TGG | - | chr4.2:93341052-93341071 | MS.gene34507:intron | 35.0% | |
ATCTTCATTTGCTTAAAGCC+AGG | + | chr4.2:93343376-93343395 | None:intergenic | 35.0% | |
ATGAAGAACAGATTTAGCCT+CGG | + | chr4.2:93341045-93341064 | None:intergenic | 35.0% | |
ATGTGTTATGTACATCCTAC+TGG | - | chr4.2:93342945-93342964 | MS.gene34507:intron | 35.0% | |
ATTAATGAGGAAGAAGTGAG+GGG | - | chr4.2:93343226-93343245 | MS.gene34507:CDS | 35.0% | |
ATTTGAACAAACCTCTACCT+TGG | + | chr4.2:93341463-93341482 | None:intergenic | 35.0% | |
CAGATGCTCCACAATAAAAA+AGG | + | chr4.2:93343624-93343643 | None:intergenic | 35.0% | |
CATTAATGAGGAAGAAGTGA+GGG | - | chr4.2:93343225-93343244 | MS.gene34507:CDS | 35.0% | |
CTAATTGCACTGAACAATAG+TGG | + | chr4.2:93341893-93341912 | None:intergenic | 35.0% | |
GCAAATGAAGATTATAAGGC+AGG | - | chr4.2:93343384-93343403 | MS.gene34507:CDS | 35.0% | |
GTAATTATTGAGGGCAAAGT+TGG | + | chr4.2:93342417-93342436 | None:intergenic | 35.0% | |
TAATCTATGTGCCAAAATGG+AGG | - | chr4.2:93342548-93342567 | MS.gene34507:intron | 35.0% | |
TAGCAGTTATGTTCCAATTC+AGG | - | chr4.2:93342116-93342135 | MS.gene34507:intron | 35.0% | |
TATCTCAAAGTGAATATGGG+AGG | - | chr4.2:93342762-93342781 | MS.gene34507:intron | 35.0% | |
TCAACTATGAATCACGTACA+AGG | + | chr4.2:93341359-93341378 | None:intergenic | 35.0% | |
TCTCACAATAAGTGCATGTT+TGG | - | chr4.2:93341380-93341399 | MS.gene34507:intron | 35.0% | |
TCTCTCTCTTTAACATCTTC+TGG | + | chr4.2:93340876-93340895 | None:intergenic | 35.0% | |
TCTTAGTGCGTGTTTGAATT+CGG | + | chr4.2:93341521-93341540 | None:intergenic | 35.0% | |
TGAATTGGAACATAACTGCT+AGG | + | chr4.2:93342117-93342136 | None:intergenic | 35.0% | |
TGCTGCTAAAGATATTCTTC+AGG | - | chr4.2:93341004-93341023 | MS.gene34507:intron | 35.0% | |
TGCTTTAATCTTGCCTTCTT+TGG | + | chr4.2:93342891-93342910 | None:intergenic | 35.0% | |
TGGAAGACCCGTTATAAATA+TGG | + | chr4.2:93340856-93340875 | None:intergenic | 35.0% | |
TTATGTGTCTGTGTCATGTT+TGG | - | chr4.2:93341330-93341349 | MS.gene34507:intron | 35.0% | |
TTCTATGCCGTGTCATATAT+TGG | - | chr4.2:93343314-93343333 | MS.gene34507:CDS | 35.0% | |
! | AGAAAAACCGATATTTTCCG+CGG | - | chr4.2:93341911-93341930 | MS.gene34507:intron | 35.0% |
! | GGCTTGATATTTTCTCTTGT+TGG | - | chr4.2:93342626-93342645 | MS.gene34507:CDS | 35.0% |
! | GTAGAGGTTTGTTCAAATCA+TGG | - | chr4.2:93341465-93341484 | MS.gene34507:intron | 35.0% |
! | TAAGTGCATGTTTGGAATGA+CGG | - | chr4.2:93341388-93341407 | MS.gene34507:intron | 35.0% |
! | TTTGTGTTAGTTTACCCATG+TGG | + | chr4.2:93341715-93341734 | None:intergenic | 35.0% |
!! | TGTGATTTGTTGAAACTCCA+AGG | - | chr4.2:93341443-93341462 | MS.gene34507:intron | 35.0% |
!! | TTCACAATGAGTGTCGTTTA+AGG | + | chr4.2:93342585-93342604 | None:intergenic | 35.0% |
AAAGCCATTCTCACCTGAAT+TGG | + | chr4.2:93342132-93342151 | None:intergenic | 40.0% | |
AACTGAGAAGCTTCAAAACC+AGG | + | chr4.2:93340924-93340943 | None:intergenic | 40.0% | |
AATGGAGGGAGTAGTTGAAA+AGG | - | chr4.2:93342604-93342623 | MS.gene34507:CDS | 40.0% | |
ACCCTGTTTATTGGGAACTT+GGG | - | chr4.2:93343196-93343215 | MS.gene34507:intron | 40.0% | |
ATGCCAATTGAACCAGAACT+TGG | + | chr4.2:93343588-93343607 | None:intergenic | 40.0% | |
ATGGAGGGAGTAGTTGAAAA+GGG | - | chr4.2:93342605-93342624 | MS.gene34507:CDS | 40.0% | |
CACATCCTGCAATAGGTTAT+TGG | + | chr4.2:93343520-93343539 | None:intergenic | 40.0% | |
CACTATTCACATCCTGCAAT+AGG | + | chr4.2:93343527-93343546 | None:intergenic | 40.0% | |
CTTGCAACACCCTGTTTATT+GGG | - | chr4.2:93343188-93343207 | MS.gene34507:intron | 40.0% | |
CTTGGGAGAGAACATTAATG+AGG | - | chr4.2:93343213-93343232 | MS.gene34507:intron | 40.0% | |
GACACTCATTGTGAAATGGA+GGG | - | chr4.2:93342590-93342609 | MS.gene34507:intron | 40.0% | |
GCTGGGGATTATAATCATAC+TGG | - | chr4.2:93341640-93341659 | MS.gene34507:intron | 40.0% | |
GGTATCCAATAACCTATTGC+AGG | - | chr4.2:93343512-93343531 | MS.gene34507:intron | 40.0% | |
TAGCCTGCATATGGATCATA+CGG | + | chr4.2:93342051-93342070 | None:intergenic | 40.0% | |
TCCCAAGTTCCCAATAAACA+GGG | + | chr4.2:93343200-93343219 | None:intergenic | 40.0% | |
TCTCAAAGTGAATATGGGAG+GGG | - | chr4.2:93342764-93342783 | MS.gene34507:intron | 40.0% | |
TGAAGAACAGATTTAGCCTC+GGG | + | chr4.2:93341044-93341063 | None:intergenic | 40.0% | |
TGAAGATTATAAGGCAGGAG+AGG | - | chr4.2:93343389-93343408 | MS.gene34507:CDS | 40.0% | |
TGCCAATTGAACCAGAACTT+GGG | + | chr4.2:93343587-93343606 | None:intergenic | 40.0% | |
TGTCAATGTCGGTATTGTGA+AGG | + | chr4.2:93341212-93341231 | None:intergenic | 40.0% | |
TGTTCCAATTCAGGTGAGAA+TGG | - | chr4.2:93342125-93342144 | MS.gene34507:intron | 40.0% | |
TTAGCAGCAATAGCTTGATG+AGG | + | chr4.2:93340993-93341012 | None:intergenic | 40.0% | |
TTCAAAGCCGAAAAGCCTAT+GGG | - | chr4.2:93340948-93340967 | MS.gene34507:intron | 40.0% | |
TTGAAGAGAGCAAAACCCAT+AGG | + | chr4.2:93340966-93340985 | None:intergenic | 40.0% | |
TTGTTGAAACTCCAAGGTAG+AGG | - | chr4.2:93341449-93341468 | MS.gene34507:intron | 40.0% | |
TTTCAAAGCCGAAAAGCCTA+TGG | - | chr4.2:93340947-93340966 | MS.gene34507:intron | 40.0% | |
! | AGCAAAACCCATAGGCTTTT+CGG | + | chr4.2:93340958-93340977 | None:intergenic | 40.0% |
!! | ATCAGCAGAAGTGTCAATGT+CGG | + | chr4.2:93341223-93341242 | None:intergenic | 40.0% |
!! | ATCCCAAGTTCTGGTTCAAT+TGG | - | chr4.2:93343582-93343601 | MS.gene34507:CDS | 40.0% |
!! | TGAAGGAAGTACTACCTCTT+CGG | + | chr4.2:93340770-93340789 | None:intergenic | 40.0% |
AAATGTGCACCACAATCTGC+AGG | - | chr4.2:93343551-93343570 | MS.gene34507:CDS | 45.0% | |
AACCAGGTAACCATCGACAA+AGG | + | chr4.2:93340908-93340927 | None:intergenic | 45.0% | |
AACCTTTGTCGATGGTTACC+TGG | - | chr4.2:93340903-93340922 | MS.gene34507:CDS | 45.0% | |
AATGTGCACCACAATCTGCA+GGG | - | chr4.2:93343552-93343571 | MS.gene34507:CDS | 45.0% | |
ACTGTCCTTGAAGTCCTGAA+CGG | - | chr4.2:93342717-93342736 | MS.gene34507:intron | 45.0% | |
AGTAAACGGTTACGAACAGC+TGG | - | chr4.2:93341622-93341641 | MS.gene34507:intron | 45.0% | |
AGTACTACCTCTTCGGAAGA+AGG | + | chr4.2:93340763-93340782 | None:intergenic | 45.0% | |
ATGTTGACAATTGCAGACCG+CGG | + | chr4.2:93341931-93341950 | None:intergenic | 45.0% | |
CACCCTGTTTATTGGGAACT+TGG | - | chr4.2:93343195-93343214 | MS.gene34507:intron | 45.0% | |
CCTTGCAACACCCTGTTTAT+TGG | - | chr4.2:93343187-93343206 | MS.gene34507:intron | 45.0% | |
CGACACTCATTGTGAAATGG+AGG | - | chr4.2:93342589-93342608 | MS.gene34507:intron | 45.0% | |
CTCCCAAGTTCCCAATAAAC+AGG | + | chr4.2:93343201-93343220 | None:intergenic | 45.0% | |
GAACAGAAGAGCTGTGTCAA+AGG | + | chr4.2:93343279-93343298 | None:intergenic | 45.0% | |
GACATTGACACTTCTGCTGA+TGG | - | chr4.2:93341222-93341241 | MS.gene34507:intron | 45.0% | |
GAGCTCAAAATTGCACACGA+AGG | + | chr4.2:93342213-93342232 | None:intergenic | 45.0% | |
GCTTTGTAATGCAGACAACC+TGG | - | chr4.2:93343355-93343374 | MS.gene34507:CDS | 45.0% | |
GGAAGAAGGAGAAGGAATAG+CGG | + | chr4.2:93340749-93340768 | None:intergenic | 45.0% | |
GTAAACGGTTACGAACAGCT+GGG | - | chr4.2:93341623-93341642 | MS.gene34507:intron | 45.0% | |
TAAACGGTTACGAACAGCTG+GGG | - | chr4.2:93341624-93341643 | MS.gene34507:intron | 45.0% | |
TTGCAGACCGCGGAAAATAT+CGG | + | chr4.2:93341921-93341940 | None:intergenic | 45.0% | |
! | TTGTCTTTCGCCCTCCATTT+TGG | + | chr4.2:93342562-93342581 | None:intergenic | 45.0% |
!! | ATAAACAGGGTGTTGCAAGG+AGG | + | chr4.2:93343187-93343206 | None:intergenic | 45.0% |
!! | CCAATAAACAGGGTGTTGCA+AGG | + | chr4.2:93343190-93343209 | None:intergenic | 45.0% |
!! | GGATATGCTTTTTGATCCCG+AGG | - | chr4.2:93341025-93341044 | MS.gene34507:intron | 45.0% |
!! | GTTCTGGTTCAATTGGCATG+CGG | - | chr4.2:93343589-93343608 | MS.gene34507:CDS | 45.0% |
!! | TAAACAGGGTGTTGCAAGGA+GGG | + | chr4.2:93343186-93343205 | None:intergenic | 45.0% |
ACCTCTTCGGAAGAAGGAGA+AGG | + | chr4.2:93340757-93340776 | None:intergenic | 50.0% | |
AGAAGGAGAAGGAATAGCGG+TGG | + | chr4.2:93340746-93340765 | None:intergenic | 50.0% | |
ATAGACACAGGAGCAGGCAT+TGG | + | chr4.2:93342090-93342109 | None:intergenic | 50.0% | |
CCTCCGTATGATCCATATGC+AGG | - | chr4.2:93342045-93342064 | MS.gene34507:intron | 50.0% | |
CCTGCATATGGATCATACGG+AGG | + | chr4.2:93342048-93342067 | None:intergenic | 50.0% | |
CTGCTAGGTGAGATAGACAC+AGG | + | chr4.2:93342102-93342121 | None:intergenic | 50.0% | |
CTGTCCTTGAAGTCCTGAAC+GGG | - | chr4.2:93342718-93342737 | MS.gene34507:intron | 50.0% | |
GAAGGAGAAGGAATAGCGGT+GGG | + | chr4.2:93340745-93340764 | None:intergenic | 50.0% | |
GCAACAGGATAGCCTGCATA+TGG | + | chr4.2:93342060-93342079 | None:intergenic | 50.0% | |
GCATATGGATCATACGGAGG+AGG | + | chr4.2:93342045-93342064 | None:intergenic | 50.0% | |
TAACAGCACCCTGCAGATTG+TGG | + | chr4.2:93343563-93343582 | None:intergenic | 50.0% | |
TATGGATCATACGGAGGAGG+AGG | + | chr4.2:93342042-93342061 | None:intergenic | 50.0% | |
TCCTTCTCCTTCTTCCGAAG+AGG | - | chr4.2:93340753-93340772 | MS.gene34507:CDS | 50.0% | |
!! | GGCATTGGTACTTGTGCAAC+AGG | + | chr4.2:93342075-93342094 | None:intergenic | 50.0% |
!! | GGTGCTGTTATCCCAAGTTC+TGG | - | chr4.2:93343573-93343592 | MS.gene34507:CDS | 50.0% |
CACCTGTTTGGGGACCACAT+GGG | - | chr4.2:93341698-93341717 | MS.gene34507:intron | 55.0% | |
CTGCTGATGGCAGATGTGTC+TGG | - | chr4.2:93341235-93341254 | MS.gene34507:intron | 55.0% | |
GAACTCTTCTGTGCCCGTTC+AGG | + | chr4.2:93342734-93342753 | None:intergenic | 55.0% | |
GAGGCCATTGCTGGTGGTAA+GGG | + | chr4.2:93340696-93340715 | None:intergenic | 55.0% | |
GGCGGAGGATGAAAAGGAGA+CGG | + | chr4.2:93341676-93341695 | None:intergenic | 55.0% | |
GGTGAGATAGACACAGGAGC+AGG | + | chr4.2:93342096-93342115 | None:intergenic | 55.0% | |
TACCCATGTGGTCCCCAAAC+AGG | + | chr4.2:93341703-93341722 | None:intergenic | 55.0% | |
TCCACCCTTACCACCAGCAA+TGG | - | chr4.2:93340689-93340708 | MS.gene34507:CDS | 55.0% | |
TGTGCCCGTTCAGGACTTCA+AGG | + | chr4.2:93342725-93342744 | None:intergenic | 55.0% | |
!! | GAAGGAATAGCGGTGGGTTG+AGG | + | chr4.2:93340739-93340758 | None:intergenic | 55.0% |
ATCCTCCGCCACCACCTGTT+TGG | - | chr4.2:93341686-93341705 | MS.gene34507:intron | 60.0% | |
CCACCTGTTTGGGGACCACA+TGG | - | chr4.2:93341697-93341716 | MS.gene34507:intron | 60.0% | |
CCATGTGGTCCCCAAACAGG+TGG | + | chr4.2:93341700-93341719 | None:intergenic | 60.0% | |
GCCATTGCTGGTGGTAAGGG+TGG | + | chr4.2:93340693-93340712 | None:intergenic | 60.0% | |
GGAGGCCATTGCTGGTGGTA+AGG | + | chr4.2:93340697-93340716 | None:intergenic | 60.0% | |
GGATCATACGGAGGAGGAGG+TGG | + | chr4.2:93342039-93342058 | None:intergenic | 60.0% | |
GGGTTGAGGAGGAGGAGGAA+CGG | + | chr4.2:93340725-93340744 | None:intergenic | 60.0% | |
GTGGTAAGGGTGGATGCCGT+TGG | + | chr4.2:93340683-93340702 | None:intergenic | 60.0% | |
TCATACGGAGGAGGAGGTGG+TGG | + | chr4.2:93342036-93342055 | None:intergenic | 60.0% | |
TCCTCCGCCACCACCTGTTT+GGG | - | chr4.2:93341687-93341706 | MS.gene34507:intron | 60.0% | |
TGTGGTCCCCAAACAGGTGG+TGG | + | chr4.2:93341697-93341716 | None:intergenic | 60.0% | |
TTGAGGAGGAGGAGGAACGG+CGG | + | chr4.2:93340722-93340741 | None:intergenic | 60.0% | |
!! | ATAGCGGTGGGTTGAGGAGG+AGG | + | chr4.2:93340733-93340752 | None:intergenic | 60.0% |
!! | GGAATAGCGGTGGGTTGAGG+AGG | + | chr4.2:93340736-93340755 | None:intergenic | 60.0% |
!! | GGTGGTGGCGGAGGATGAAA+AGG | + | chr4.2:93341682-93341701 | None:intergenic | 60.0% |
CCTCCGCCACCACCTGTTTG+GGG | - | chr4.2:93341688-93341707 | MS.gene34507:intron | 65.0% | |
! | GGTCCCCAAACAGGTGGTGG+CGG | + | chr4.2:93341694-93341713 | None:intergenic | 65.0% |
AGGAGGAGGAGGAACGGCGG+CGG | + | chr4.2:93340719-93340738 | None:intergenic | 70.0% | |
!! | CCCCAAACAGGTGGTGGCGG+AGG | + | chr4.2:93341691-93341710 | None:intergenic | 70.0% |
!! | GCGGTGGGTTGAGGAGGAGG+AGG | + | chr4.2:93340730-93340749 | None:intergenic | 70.0% |
CGGCGGGAGGCCATTGCTGG+TGG | + | chr4.2:93340702-93340721 | None:intergenic | 75.0% | |
GGAGGAGGAGGAACGGCGGC+GGG | + | chr4.2:93340718-93340737 | None:intergenic | 75.0% | |
! | CGGCGGCGGGAGGCCATTGC+TGG | + | chr4.2:93340705-93340724 | None:intergenic | 80.0% |
! | GGAGGAGGAACGGCGGCGGG+AGG | + | chr4.2:93340715-93340734 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 93340673 | 93343644 | 93340673 | ID=MS.gene34507 |
chr4.2 | mRNA | 93340673 | 93343644 | 93340673 | ID=MS.gene34507.t1;Parent=MS.gene34507 |
chr4.2 | exon | 93343543 | 93343644 | 93343543 | ID=MS.gene34507.t1.exon1;Parent=MS.gene34507.t1 |
chr4.2 | CDS | 93343543 | 93343644 | 93343543 | ID=cds.MS.gene34507.t1;Parent=MS.gene34507.t1 |
chr4.2 | exon | 93343216 | 93343471 | 93343216 | ID=MS.gene34507.t1.exon2;Parent=MS.gene34507.t1 |
chr4.2 | CDS | 93343216 | 93343471 | 93343216 | ID=cds.MS.gene34507.t1;Parent=MS.gene34507.t1 |
chr4.2 | exon | 93342598 | 93342727 | 93342598 | ID=MS.gene34507.t1.exon3;Parent=MS.gene34507.t1 |
chr4.2 | CDS | 93342598 | 93342727 | 93342598 | ID=cds.MS.gene34507.t1;Parent=MS.gene34507.t1 |
chr4.2 | exon | 93342180 | 93342294 | 93342180 | ID=MS.gene34507.t1.exon4;Parent=MS.gene34507.t1 |
chr4.2 | CDS | 93342180 | 93342294 | 93342180 | ID=cds.MS.gene34507.t1;Parent=MS.gene34507.t1 |
chr4.2 | exon | 93341057 | 93341148 | 93341057 | ID=MS.gene34507.t1.exon5;Parent=MS.gene34507.t1 |
chr4.2 | CDS | 93341057 | 93341148 | 93341057 | ID=cds.MS.gene34507.t1;Parent=MS.gene34507.t1 |
chr4.2 | exon | 93340879 | 93340948 | 93340879 | ID=MS.gene34507.t1.exon6;Parent=MS.gene34507.t1 |
chr4.2 | CDS | 93340879 | 93340948 | 93340879 | ID=cds.MS.gene34507.t1;Parent=MS.gene34507.t1 |
chr4.2 | exon | 93340673 | 93340783 | 93340673 | ID=MS.gene34507.t1.exon7;Parent=MS.gene34507.t1 |
chr4.2 | CDS | 93340673 | 93340783 | 93340673 | ID=cds.MS.gene34507.t1;Parent=MS.gene34507.t1 |
Gene Sequence |
Protein sequence |