Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35465.t1 | XP_013460946.1 | 96.3 | 482 | 17 | 1 | 1 | 482 | 1 | 481 | 1.20E-268 | 935.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35465.t1 | P73245 | 38.2 | 422 | 242 | 5 | 48 | 469 | 7 | 409 | 8.6e-79 | 295.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35465.t1 | A0A072V9X5 | 96.3 | 482 | 17 | 1 | 1 | 482 | 1 | 481 | 8.4e-269 | 935.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene35465 | 0.801323 | 9.51E-49 | -1.69E-46 |
| MS.gene049217 | MS.gene35465 | 0.82436 | 8.42E-54 | -1.69E-46 |
| MS.gene049285 | MS.gene35465 | 0.809915 | 1.49E-50 | -1.69E-46 |
| MS.gene049627 | MS.gene35465 | 0.803293 | 3.74E-49 | -1.69E-46 |
| MS.gene050163 | MS.gene35465 | 0.826059 | 3.34E-54 | -1.69E-46 |
| MS.gene050165 | MS.gene35465 | 0.820259 | 7.54E-53 | -1.69E-46 |
| MS.gene050333 | MS.gene35465 | 0.818303 | 2.10E-52 | -1.69E-46 |
| MS.gene050504 | MS.gene35465 | 0.814237 | 1.71E-51 | -1.69E-46 |
| MS.gene052605 | MS.gene35465 | 0.881915 | 1.61E-70 | -1.69E-46 |
| MS.gene052615 | MS.gene35465 | 0.807445 | 5.04E-50 | -1.69E-46 |
| MS.gene053632 | MS.gene35465 | 0.824391 | 8.28E-54 | -1.69E-46 |
| MS.gene055502 | MS.gene35465 | 0.818248 | 2.16E-52 | -1.69E-46 |
| MS.gene056692 | MS.gene35465 | 0.822514 | 2.27E-53 | -1.69E-46 |
| MS.gene058419 | MS.gene35465 | 0.802196 | 6.29E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene35465 | 0.805835 | 1.10E-49 | -1.69E-46 |
| MS.gene059023 | MS.gene35465 | 0.8076 | 4.67E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene35465 | 0.808469 | 3.05E-50 | -1.69E-46 |
| MS.gene059718 | MS.gene35465 | 0.825994 | 3.46E-54 | -1.69E-46 |
| MS.gene059801 | MS.gene35465 | 0.811103 | 8.28E-51 | -1.69E-46 |
| MS.gene06092 | MS.gene35465 | 0.801938 | 7.11E-49 | -1.69E-46 |
| MS.gene061150 | MS.gene35465 | 0.806293 | 8.83E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35465.t1 | MTR_3g075110 | 96.266 | 482 | 17 | 1 | 1 | 482 | 1 | 481 | 0.0 | 968 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35465.t1 | AT5G63290 | 59.016 | 488 | 174 | 6 | 1 | 468 | 1 | 482 | 0.0 | 604 |
Find 114 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAACAAGGCACAAAATT+TGG | 0.144991 | 3.4:+73744956 | MS.gene35465:CDS |
| GAGACATTGAAGATGAAATT+TGG | 0.164347 | 3.4:+73744608 | MS.gene35465:CDS |
| TCTGGGAGTTCAAGCGTTTC+AGG | 0.165044 | 3.4:+73744730 | MS.gene35465:CDS |
| CATGTACTCATTCACCTTCC+TGG | 0.233439 | 3.4:-73745542 | None:intergenic |
| CGACATCAACAATTCTCTTT+TGG | 0.234544 | 3.4:+73745810 | MS.gene35465:CDS |
| GATTTCATAATGGTTATAAT+TGG | 0.235080 | 3.4:-73745398 | None:intergenic |
| CTATTAACTCATTTGATAAA+AGG | 0.246147 | 3.4:-73745891 | None:intergenic |
| GAGTTAATAGCCCTTGCTTT+TGG | 0.270052 | 3.4:+73745904 | MS.gene35465:CDS |
| ATTAGGCGGGTTGATGGTTT+TGG | 0.273462 | 3.4:-73744248 | None:intergenic |
| CATGAAATTCGTGGAAAATC+TGG | 0.286286 | 3.4:+73745561 | MS.gene35465:CDS |
| AAGTATGGTTGGAACGGTTT+TGG | 0.291180 | 3.4:+73744586 | MS.gene35465:CDS |
| AGACATTGAAGATGAAATTT+GGG | 0.331218 | 3.4:+73744609 | MS.gene35465:CDS |
| CAGCTCTCTGGTTCTCTCTC+TGG | 0.344115 | 3.4:+73745711 | MS.gene35465:CDS |
| AAATGTGGGAGGAAAGTTTA+AGG | 0.354228 | 3.4:+73744885 | MS.gene35465:CDS |
| TACAAGCCTTTCTATGCCTT+TGG | 0.354998 | 3.4:+73745475 | MS.gene35465:CDS |
| GGGAGTGAATAGAGTTTCTC+TGG | 0.355835 | 3.4:+73744712 | MS.gene35465:CDS |
| TTCGTGGAAAATCTGGAAAA+TGG | 0.365028 | 3.4:+73745568 | MS.gene35465:CDS |
| TTTGATAAAAGGAAACCATT+TGG | 0.367470 | 3.4:-73745880 | None:intergenic |
| GAGAGCTGCCAAATGATTCT+TGG | 0.367558 | 3.4:-73745696 | None:intergenic |
| GTCCCTGGTTCCTCCAAGTA+TGG | 0.370338 | 3.4:+73744571 | MS.gene35465:CDS |
| TGGAGGTGGGACGCCGTCCC+TGG | 0.373141 | 3.4:+73744556 | MS.gene35465:CDS |
| TTTGTTATTAGGCGGGTTGA+TGG | 0.377434 | 3.4:-73744254 | None:intergenic |
| GTAGACACAACTTTACCTAT+TGG | 0.377880 | 3.4:+73745449 | MS.gene35465:CDS |
| CCTTTCTATGCCTTTGGCCT+CGG | 0.379342 | 3.4:+73745481 | MS.gene35465:CDS |
| AAAAGTGTGGGGTTGAGAAT+TGG | 0.383894 | 3.4:+73744822 | MS.gene35465:CDS |
| TTGGGGTTATTGACTCTTGG+AGG | 0.401602 | 3.4:+73745923 | MS.gene35465:CDS |
| ATGTACTCATTCACCTTCCT+GGG | 0.403580 | 3.4:-73745541 | None:intergenic |
| AGAAGTTGTTGAAGAGTTGT+GGG | 0.410136 | 3.4:+73744753 | MS.gene35465:CDS |
| AGTAGCTGCTGATTTCATAA+TGG | 0.410732 | 3.4:-73745408 | None:intergenic |
| TGCTGAAATTTCGATGGAAA+TGG | 0.412741 | 3.4:+73744643 | MS.gene35465:CDS |
| TACGTTTGATTGTAAGAAGA+TGG | 0.413518 | 3.4:+73744673 | MS.gene35465:CDS |
| TTGTGGGAGGGCACATGGTT+TGG | 0.414910 | 3.4:+73744769 | MS.gene35465:CDS |
| AAGCGTTACCAAGAATCATT+TGG | 0.417084 | 3.4:+73745688 | MS.gene35465:CDS |
| TCTGGTTCTCTCTCTGGTTG+AGG | 0.422048 | 3.4:+73745717 | MS.gene35465:CDS |
| CTGAAGAAGGGGTGATGGTT+GGG | 0.425240 | 3.4:-73744334 | None:intergenic |
| TGGATCACTTAGCCTCATAT+AGG | 0.428653 | 3.4:-73745860 | None:intergenic |
| GAGAAGTTGTTGAAGAGTTG+TGG | 0.438707 | 3.4:+73744752 | MS.gene35465:CDS |
| GAAAGGCTTGTACTTCCAAT+AGG | 0.443597 | 3.4:-73745464 | None:intergenic |
| AAAACCGTTCCAACCATACT+TGG | 0.446657 | 3.4:-73744584 | None:intergenic |
| AGAATCATTTGGCAGCTCTC+TGG | 0.455230 | 3.4:+73745699 | MS.gene35465:CDS |
| GATGGAAGAGATGATGTTGT+TGG | 0.466524 | 3.4:+73744691 | MS.gene35465:CDS |
| GAGGGCACATGGTTTGGATG+AGG | 0.485338 | 3.4:+73744775 | MS.gene35465:CDS |
| AAAAGTGTTTGTTATTAGGC+GGG | 0.488015 | 3.4:-73744261 | None:intergenic |
| AGGTGAATGTAAGCTGAAGA+AGG | 0.488519 | 3.4:-73744347 | None:intergenic |
| GCTGAAGAAGGGGTGATGGT+TGG | 0.488753 | 3.4:-73744335 | None:intergenic |
| TGGGGTTATTGACTCTTGGA+GGG | 0.489544 | 3.4:+73745924 | MS.gene35465:CDS |
| GCTTCATTGCCTCATCAGAC+TGG | 0.495628 | 3.4:+73744860 | MS.gene35465:CDS |
| CAACCATACTTGGAGGAACC+AGG | 0.499090 | 3.4:-73744574 | None:intergenic |
| CTGGTTCCTCCAAGTATGGT+TGG | 0.504709 | 3.4:+73744575 | MS.gene35465:CDS |
| ACATGTCCACTCTCAACATA+AGG | 0.504850 | 3.4:-73745748 | None:intergenic |
| TCCTCCAAGTATGGTTGGAA+CGG | 0.506169 | 3.4:+73744580 | MS.gene35465:CDS |
| GACTTCCCCATCGTCGCTCT+CGG | 0.508943 | 3.4:+73744401 | MS.gene35465:CDS |
| ATGGAAGAGATGATGTTGTT+GGG | 0.509834 | 3.4:+73744692 | MS.gene35465:CDS |
| GCGCAGCCGAGAGCGACGAT+GGG | 0.516001 | 3.4:-73744407 | None:intergenic |
| AAAAGAGAGTGGCCTATATG+AGG | 0.521359 | 3.4:+73745848 | MS.gene35465:CDS |
| AAGAGTTGTGGGAGGGCACA+TGG | 0.523910 | 3.4:+73744764 | MS.gene35465:CDS |
| AGCGCAGCCGAGAGCGACGA+TGG | 0.527821 | 3.4:-73744408 | None:intergenic |
| TGGCTCTGCAGAGAAATCAA+TGG | 0.537726 | 3.4:+73744476 | MS.gene35465:CDS |
| GTGTCATAAACTACATTCAA+TGG | 0.538852 | 3.4:+73744456 | MS.gene35465:CDS |
| GGTGAATGTAAGCTGAAGAA+GGG | 0.540772 | 3.4:-73744346 | None:intergenic |
| GTCAATAACCCCAAAAGCAA+GGG | 0.541226 | 3.4:-73745914 | None:intergenic |
| TAATAGCAAGGACAAAGCAT+TGG | 0.546969 | 3.4:+73745621 | MS.gene35465:CDS |
| TAGACCTCTTGCTGTTCTCA+AGG | 0.547538 | 3.4:-73745659 | None:intergenic |
| AAGTTTAAGGCTCGCCATTG+AGG | 0.549781 | 3.4:+73744898 | MS.gene35465:CDS |
| ATGAGTTGGCTGTGCCTCAA+TGG | 0.550891 | 3.4:-73744912 | None:intergenic |
| CCGAGGCCAAAGGCATAGAA+AGG | 0.554611 | 3.4:-73745481 | None:intergenic |
| TGGCAGCGTTTACGACAGAA+AGG | 0.557441 | 3.4:-73744371 | None:intergenic |
| TATAAACCTTATGTTGAGAG+TGG | 0.557941 | 3.4:+73745742 | MS.gene35465:CDS |
| ATGAGGCTAAGTGATCCAAA+TGG | 0.560677 | 3.4:+73745865 | MS.gene35465:CDS |
| GTAGCTTCTTGGAGTGCAGA+AGG | 0.561374 | 3.4:-73745952 | None:intergenic |
| ACCGTTCCAACCATACTTGG+AGG | 0.563000 | 3.4:-73744581 | None:intergenic |
| TTCTTACAATCAAACGTACC+CGG | 0.565207 | 3.4:-73744668 | None:intergenic |
| AGTCAATAACCCCAAAAGCA+AGG | 0.565995 | 3.4:-73745915 | None:intergenic |
| TGCAAAGACGCCGCTTCAGA+CGG | 0.568649 | 3.4:+73744526 | MS.gene35465:CDS |
| AGTTGTTGAAGAGTTGTGGG+AGG | 0.572758 | 3.4:+73744756 | MS.gene35465:CDS |
| AACAAGGCACAAAATTTGGA+AGG | 0.574125 | 3.4:+73744960 | MS.gene35465:CDS |
| GAAGGCAATGGAAATTCCCC+TGG | 0.579543 | 3.4:-73745322 | None:intergenic |
| AATTTCGATGGAAATGGACC+CGG | 0.583112 | 3.4:+73744649 | MS.gene35465:CDS |
| CGCAGCCGAGAGCGACGATG+GGG | 0.583563 | 3.4:-73744406 | None:intergenic |
| CTCATCAGACTGGTGAAATG+TGG | 0.586079 | 3.4:+73744870 | MS.gene35465:CDS |
| TCATAAACAGAAACATGAGT+TGG | 0.592813 | 3.4:-73744926 | None:intergenic |
| GAATGAGTACATGAAATTCG+TGG | 0.596236 | 3.4:+73745552 | MS.gene35465:CDS |
| ACTAGTAGAGCCGAGGCCAA+AGG | 0.596278 | 3.4:-73745491 | None:intergenic |
| TCAGCGGATTGTGTCTCAGA+AGG | 0.596735 | 3.4:-73745340 | None:intergenic |
| CTGTCCTTGAGAACAGCAAG+AGG | 0.597347 | 3.4:+73745655 | MS.gene35465:CDS |
| ATCAGCAGCTACTGTAAGAG+TGG | 0.597915 | 3.4:+73745418 | MS.gene35465:CDS |
| ATTTCGATGGAAATGGACCC+GGG | 0.599512 | 3.4:+73744650 | MS.gene35465:CDS |
| GTAAGCTGAAGAAGGGGTGA+TGG | 0.604094 | 3.4:-73744339 | None:intergenic |
| GATTGTGTCTCAGAAGGCAA+TGG | 0.604210 | 3.4:-73745334 | None:intergenic |
| GGAGTGAATAGAGTTTCTCT+GGG | 0.605409 | 3.4:+73744713 | MS.gene35465:CDS |
| CACATTTCACCAGTCTGATG+AGG | 0.607000 | 3.4:-73744869 | None:intergenic |
| AATGTTAACAGGTATTCACC+AGG | 0.607528 | 3.4:+73745304 | MS.gene35465:intron |
| TGAAAGTGCTGAAATTTCGA+TGG | 0.611357 | 3.4:+73744637 | MS.gene35465:CDS |
| TGGTTTGGATGAGGTTCATG+AGG | 0.613397 | 3.4:+73744784 | MS.gene35465:CDS |
| GTTGTTGAAGAGTTGTGGGA+GGG | 0.619959 | 3.4:+73744757 | MS.gene35465:CDS |
| TCTTACAATCAAACGTACCC+GGG | 0.621772 | 3.4:-73744667 | None:intergenic |
| GGCAGCGTTTACGACAGAAA+GGG | 0.622614 | 3.4:-73744370 | None:intergenic |
| ATACTTGGAGGAACCAGGGA+CGG | 0.624368 | 3.4:-73744569 | None:intergenic |
| TATGATCTGCAAATTGAACA+AGG | 0.624447 | 3.4:+73744944 | MS.gene35465:CDS |
| TGATGACAACATTAATAGCA+AGG | 0.635250 | 3.4:+73745609 | MS.gene35465:CDS |
| TGAATGTAGTTTATGACACG+CGG | 0.644338 | 3.4:-73744452 | None:intergenic |
| GTGAATGTAAGCTGAAGAAG+GGG | 0.649743 | 3.4:-73744345 | None:intergenic |
| TCATCAGACTGGTGAAATGT+GGG | 0.649858 | 3.4:+73744871 | MS.gene35465:CDS |
| AACCATACTTGGAGGAACCA+GGG | 0.649992 | 3.4:-73744573 | None:intergenic |
| AGCGTTTACGACAGAAAGGG+AGG | 0.660387 | 3.4:-73744367 | None:intergenic |
| CGATGGGGAAGTCACAGTAG+TGG | 0.663567 | 3.4:-73744391 | None:intergenic |
| CAATAAAACTAGTAGAGCCG+AGG | 0.664303 | 3.4:-73745498 | None:intergenic |
| TGTTAACAGGTATTCACCAG+GGG | 0.672471 | 3.4:+73745306 | MS.gene35465:intron |
| ATGTTAACAGGTATTCACCA+GGG | 0.678250 | 3.4:+73745305 | MS.gene35465:intron |
| TCAGACTGGTGAAATGTGGG+AGG | 0.678428 | 3.4:+73744874 | MS.gene35465:CDS |
| GACATTGAAGATGAAATTTG+GGG | 0.678951 | 3.4:+73744610 | MS.gene35465:CDS |
| TTATGTTGAGAGTGGACATG+TGG | 0.679713 | 3.4:+73745750 | MS.gene35465:CDS |
| GAATGTAGTTTATGACACGC+GGG | 0.684399 | 3.4:-73744451 | None:intergenic |
| AACTGACTTAGAAAAGAGAG+TGG | 0.701765 | 3.4:+73745837 | MS.gene35465:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTGGTTTAATTTTTA+AGG | + | chr3.4:73745240-73745259 | MS.gene35465:intron | 10.0% |
| !! | AAGTAAATACAAATAATAAG+TGG | - | chr3.4:73745145-73745164 | None:intergenic | 15.0% |
| !! | ATTGATATAGTTAAAAAGTG+TGG | + | chr3.4:73744809-73744828 | MS.gene35465:CDS | 20.0% |
| !! | CTATTAACTCATTTGATAAA+AGG | - | chr3.4:73745894-73745913 | None:intergenic | 20.0% |
| !! | GATTTCATAATGGTTATAAT+TGG | - | chr3.4:73745401-73745420 | None:intergenic | 20.0% |
| !! | TAATAAGTAATATTCCTAAC+AGG | + | chr3.4:73745082-73745101 | MS.gene35465:intron | 20.0% |
| !!! | TTATAATGATGATGATGATT+TGG | + | chr3.4:73745267-73745286 | MS.gene35465:intron | 20.0% |
| !!! | TTGAAAAAGTGTTTGTTATT+AGG | - | chr3.4:73744268-73744287 | None:intergenic | 20.0% |
| !!! | TTGATATAGTTAAAAAGTGT+GGG | + | chr3.4:73744810-73744829 | MS.gene35465:CDS | 20.0% |
| ! | AGACATTGAAGATGAAATTT+GGG | + | chr3.4:73744609-73744628 | MS.gene35465:CDS | 25.0% |
| ! | TGTAACTTTATCGATGAAAT+TGG | + | chr3.4:73745187-73745206 | MS.gene35465:intron | 25.0% |
| ! | TTTGATAAAAGGAAACCATT+TGG | - | chr3.4:73745883-73745902 | None:intergenic | 25.0% |
| !! | TGATATAGTTAAAAAGTGTG+GGG | + | chr3.4:73744811-73744830 | MS.gene35465:CDS | 25.0% |
| !!! | AAAAAGTGTTTGTTATTAGG+CGG | - | chr3.4:73744265-73744284 | None:intergenic | 25.0% |
| !!! | TAGCAGCATTGATAATTTTT+TGG | + | chr3.4:73745226-73745245 | MS.gene35465:intron | 25.0% |
| AACTTTATCGATGAAATTGG+TGG | + | chr3.4:73745190-73745209 | MS.gene35465:intron | 30.0% | |
| ATTGAACAAGGCACAAAATT+TGG | + | chr3.4:73744956-73744975 | MS.gene35465:CDS | 30.0% | |
| ATTTACTCGAGTGACAAAAT+AGG | - | chr3.4:73745057-73745076 | None:intergenic | 30.0% | |
| GACATTGAAGATGAAATTTG+GGG | + | chr3.4:73744610-73744629 | MS.gene35465:CDS | 30.0% | |
| GAGACATTGAAGATGAAATT+TGG | + | chr3.4:73744608-73744627 | MS.gene35465:CDS | 30.0% | |
| GAGTGACAAAATAGGAAAAA+GGG | - | chr3.4:73745049-73745068 | None:intergenic | 30.0% | |
| GTGTCATAAACTACATTCAA+TGG | + | chr3.4:73744456-73744475 | MS.gene35465:CDS | 30.0% | |
| TACGTTTGATTGTAAGAAGA+TGG | + | chr3.4:73744673-73744692 | MS.gene35465:CDS | 30.0% | |
| TAGTCGCTAGTGTAAAATAT+AGG | - | chr3.4:73744998-73745017 | None:intergenic | 30.0% | |
| TATAAACCTTATGTTGAGAG+TGG | + | chr3.4:73745742-73745761 | MS.gene35465:CDS | 30.0% | |
| TATGATCTGCAAATTGAACA+AGG | + | chr3.4:73744944-73744963 | MS.gene35465:CDS | 30.0% | |
| TATTTACTTAAGCGACAAGA+CGG | + | chr3.4:73745156-73745175 | MS.gene35465:intron | 30.0% | |
| TCATAAACAGAAACATGAGT+TGG | - | chr3.4:73744929-73744948 | None:intergenic | 30.0% | |
| TGATGACAACATTAATAGCA+AGG | + | chr3.4:73745609-73745628 | MS.gene35465:CDS | 30.0% | |
| ! | ATTTTTATACGATGGCTTCA+AGG | + | chr3.4:73745362-73745381 | MS.gene35465:CDS | 30.0% |
| !! | AAAAGTGTTTGTTATTAGGC+GGG | - | chr3.4:73744264-73744283 | None:intergenic | 30.0% |
| AAAATTTGGAAGGCTGTAAG+TGG | + | chr3.4:73744970-73744989 | MS.gene35465:intron | 35.0% | |
| AAATGTGGGAGGAAAGTTTA+AGG | + | chr3.4:73744885-73744904 | MS.gene35465:CDS | 35.0% | |
| AACAAGGCACAAAATTTGGA+AGG | + | chr3.4:73744960-73744979 | MS.gene35465:CDS | 35.0% | |
| AAGCGTTACCAAGAATCATT+TGG | + | chr3.4:73745688-73745707 | MS.gene35465:CDS | 35.0% | |
| AATGTTAACAGGTATTCACC+AGG | + | chr3.4:73745304-73745323 | MS.gene35465:intron | 35.0% | |
| AGAAGTTGTTGAAGAGTTGT+GGG | + | chr3.4:73744753-73744772 | MS.gene35465:CDS | 35.0% | |
| AGCCATCGTATAAAAATCAG+CGG | - | chr3.4:73745359-73745378 | None:intergenic | 35.0% | |
| ATGGAAGAGATGATGTTGTT+GGG | + | chr3.4:73744692-73744711 | MS.gene35465:CDS | 35.0% | |
| ATGTTAACAGGTATTCACCA+GGG | + | chr3.4:73745305-73745324 | MS.gene35465:intron | 35.0% | |
| CATGAAATTCGTGGAAAATC+TGG | + | chr3.4:73745561-73745580 | MS.gene35465:CDS | 35.0% | |
| CGAGTGACAAAATAGGAAAA+AGG | - | chr3.4:73745050-73745069 | None:intergenic | 35.0% | |
| CTGAAGGTGAAAATGTTAAC+AGG | + | chr3.4:73745293-73745312 | MS.gene35465:intron | 35.0% | |
| GAATGAGTACATGAAATTCG+TGG | + | chr3.4:73745552-73745571 | MS.gene35465:CDS | 35.0% | |
| GTAGACACAACTTTACCTAT+TGG | + | chr3.4:73745449-73745468 | MS.gene35465:CDS | 35.0% | |
| TAATAGCAAGGACAAAGCAT+TGG | + | chr3.4:73745621-73745640 | MS.gene35465:CDS | 35.0% | |
| TGAATGTAGTTTATGACACG+CGG | - | chr3.4:73744455-73744474 | None:intergenic | 35.0% | |
| TGCTGAAATTTCGATGGAAA+TGG | + | chr3.4:73744643-73744662 | MS.gene35465:CDS | 35.0% | |
| TTCGTGGAAAATCTGGAAAA+TGG | + | chr3.4:73745568-73745587 | MS.gene35465:CDS | 35.0% | |
| TTCTTACAATCAAACGTACC+CGG | - | chr3.4:73744671-73744690 | None:intergenic | 35.0% | |
| ! | AACTGACTTAGAAAAGAGAG+TGG | + | chr3.4:73745837-73745856 | MS.gene35465:CDS | 35.0% |
| ! | CGACATCAACAATTCTCTTT+TGG | + | chr3.4:73745810-73745829 | MS.gene35465:CDS | 35.0% |
| !! | AGTAGCTGCTGATTTCATAA+TGG | - | chr3.4:73745411-73745430 | None:intergenic | 35.0% |
| !! | AGTTAATAGCCCTTGCTTTT+GGG | + | chr3.4:73745905-73745924 | MS.gene35465:CDS | 35.0% |
| !! | TGAAAGTGCTGAAATTTCGA+TGG | + | chr3.4:73744637-73744656 | MS.gene35465:CDS | 35.0% |
| !!! | ATCCGCTGATTTTTATACGA+TGG | + | chr3.4:73745354-73745373 | MS.gene35465:CDS | 35.0% |
| !!! | CTAGTTTTATTGGTGGTTTG+AGG | + | chr3.4:73745509-73745528 | MS.gene35465:CDS | 35.0% |
| AAAACCGTTCCAACCATACT+TGG | - | chr3.4:73744587-73744606 | None:intergenic | 40.0% | |
| AAAAGAGAGTGGCCTATATG+AGG | + | chr3.4:73745848-73745867 | MS.gene35465:CDS | 40.0% | |
| AATTTCGATGGAAATGGACC+CGG | + | chr3.4:73744649-73744668 | MS.gene35465:CDS | 40.0% | |
| ACATGTCCACTCTCAACATA+AGG | - | chr3.4:73745751-73745770 | None:intergenic | 40.0% | |
| AGGTGAATGTAAGCTGAAGA+AGG | - | chr3.4:73744350-73744369 | None:intergenic | 40.0% | |
| AGTCAATAACCCCAAAAGCA+AGG | - | chr3.4:73745918-73745937 | None:intergenic | 40.0% | |
| ATGAGGCTAAGTGATCCAAA+TGG | + | chr3.4:73745865-73745884 | MS.gene35465:CDS | 40.0% | |
| ATGTACTCATTCACCTTCCT+GGG | - | chr3.4:73745544-73745563 | None:intergenic | 40.0% | |
| CAATAAAACTAGTAGAGCCG+AGG | - | chr3.4:73745501-73745520 | None:intergenic | 40.0% | |
| CGAATGTGACAAAACGCTAA+AGG | + | chr3.4:73745106-73745125 | MS.gene35465:intron | 40.0% | |
| GAAAGGCTTGTACTTCCAAT+AGG | - | chr3.4:73745467-73745486 | None:intergenic | 40.0% | |
| GAATGTAGTTTATGACACGC+GGG | - | chr3.4:73744454-73744473 | None:intergenic | 40.0% | |
| GAGAAGTTGTTGAAGAGTTG+TGG | + | chr3.4:73744752-73744771 | MS.gene35465:CDS | 40.0% | |
| GATGGAAGAGATGATGTTGT+TGG | + | chr3.4:73744691-73744710 | MS.gene35465:CDS | 40.0% | |
| GGAGTGAATAGAGTTTCTCT+GGG | + | chr3.4:73744713-73744732 | MS.gene35465:CDS | 40.0% | |
| GGTGAATGTAAGCTGAAGAA+GGG | - | chr3.4:73744349-73744368 | None:intergenic | 40.0% | |
| GTCAATAACCCCAAAAGCAA+GGG | - | chr3.4:73745917-73745936 | None:intergenic | 40.0% | |
| GTGAATGTAAGCTGAAGAAG+GGG | - | chr3.4:73744348-73744367 | None:intergenic | 40.0% | |
| TACAAGCCTTTCTATGCCTT+TGG | + | chr3.4:73745475-73745494 | MS.gene35465:CDS | 40.0% | |
| TCATCAGACTGGTGAAATGT+GGG | + | chr3.4:73744871-73744890 | MS.gene35465:CDS | 40.0% | |
| TCTTACAATCAAACGTACCC+GGG | - | chr3.4:73744670-73744689 | None:intergenic | 40.0% | |
| TGGATCACTTAGCCTCATAT+AGG | - | chr3.4:73745863-73745882 | None:intergenic | 40.0% | |
| TGTTAACAGGTATTCACCAG+GGG | + | chr3.4:73745306-73745325 | MS.gene35465:intron | 40.0% | |
| TTATGTTGAGAGTGGACATG+TGG | + | chr3.4:73745750-73745769 | MS.gene35465:CDS | 40.0% | |
| TTTGTCACATTCGTCCTGTT+AGG | - | chr3.4:73745099-73745118 | None:intergenic | 40.0% | |
| ! | AAAAGTGTGGGGTTGAGAAT+TGG | + | chr3.4:73744822-73744841 | MS.gene35465:CDS | 40.0% |
| ! | AAGTATGGTTGGAACGGTTT+TGG | + | chr3.4:73744586-73744605 | MS.gene35465:CDS | 40.0% |
| ! | AGGAAAAAGGGTGTGAGTTT+AGG | - | chr3.4:73745037-73745056 | None:intergenic | 40.0% |
| ! | GAGTTAATAGCCCTTGCTTT+TGG | + | chr3.4:73745904-73745923 | MS.gene35465:CDS | 40.0% |
| ! | GATGATGATTTGGAAGCTGA+AGG | + | chr3.4:73745277-73745296 | MS.gene35465:intron | 40.0% |
| !! | GTTAATAGCCCTTGCTTTTG+GGG | + | chr3.4:73745906-73745925 | MS.gene35465:CDS | 40.0% |
| !! | TTTGTTATTAGGCGGGTTGA+TGG | - | chr3.4:73744257-73744276 | None:intergenic | 40.0% |
| !!! | CTCGGCTCTACTAGTTTTAT+TGG | + | chr3.4:73745499-73745518 | MS.gene35465:CDS | 40.0% |
| !!! | CTTTTGGGGTTATTGACTCT+TGG | + | chr3.4:73745920-73745939 | MS.gene35465:CDS | 40.0% |
| !!! | GGCTCTACTAGTTTTATTGG+TGG | + | chr3.4:73745502-73745521 | MS.gene35465:CDS | 40.0% |
| AACCATACTTGGAGGAACCA+GGG | - | chr3.4:73744576-73744595 | None:intergenic | 45.0% | |
| AGAATCATTTGGCAGCTCTC+TGG | + | chr3.4:73745699-73745718 | MS.gene35465:CDS | 45.0% | |
| AGTTGTTGAAGAGTTGTGGG+AGG | + | chr3.4:73744756-73744775 | MS.gene35465:CDS | 45.0% | |
| ATCAGCAGCTACTGTAAGAG+TGG | + | chr3.4:73745418-73745437 | MS.gene35465:CDS | 45.0% | |
| ATTTCGATGGAAATGGACCC+GGG | + | chr3.4:73744650-73744669 | MS.gene35465:CDS | 45.0% | |
| CACATTTCACCAGTCTGATG+AGG | - | chr3.4:73744872-73744891 | None:intergenic | 45.0% | |
| CATGTACTCATTCACCTTCC+TGG | - | chr3.4:73745545-73745564 | None:intergenic | 45.0% | |
| CCAAAAAACACCGTCTGAAG+CGG | - | chr3.4:73744539-73744558 | None:intergenic | 45.0% | |
| CTCATCAGACTGGTGAAATG+TGG | + | chr3.4:73744870-73744889 | MS.gene35465:CDS | 45.0% | |
| GAGAGCTGCCAAATGATTCT+TGG | - | chr3.4:73745699-73745718 | None:intergenic | 45.0% | |
| GATTGTGTCTCAGAAGGCAA+TGG | - | chr3.4:73745337-73745356 | None:intergenic | 45.0% | |
| GGCGCTAGTGCACAAAAAAT+GGG | - | chr3.4:73744224-73744243 | None:intergenic | 45.0% | |
| GGGAGTGAATAGAGTTTCTC+TGG | + | chr3.4:73744712-73744731 | MS.gene35465:CDS | 45.0% | |
| GTTGTTGAAGAGTTGTGGGA+GGG | + | chr3.4:73744757-73744776 | MS.gene35465:CDS | 45.0% | |
| TCCTCCAAGTATGGTTGGAA+CGG | + | chr3.4:73744580-73744599 | MS.gene35465:CDS | 45.0% | |
| ! | AAGTTTAAGGCTCGCCATTG+AGG | + | chr3.4:73744898-73744917 | MS.gene35465:CDS | 45.0% |
| ! | GAGTGGACATGTGGTTTTCT+TGG | + | chr3.4:73745759-73745778 | MS.gene35465:CDS | 45.0% |
| ! | TGGCTCTGCAGAGAAATCAA+TGG | + | chr3.4:73744476-73744495 | MS.gene35465:CDS | 45.0% |
| ! | TGGTTTGGATGAGGTTCATG+AGG | + | chr3.4:73744784-73744803 | MS.gene35465:CDS | 45.0% |
| ! | TGGTTTTCTTGGACGAGCAA+AGG | + | chr3.4:73745770-73745789 | MS.gene35465:CDS | 45.0% |
| !! | GAGGAGTTTTGTCGAACAGT+TGG | - | chr3.4:73744299-73744318 | None:intergenic | 45.0% |
| !! | GTTTGAGGTTTTCAAGACCC+AGG | + | chr3.4:73745524-73745543 | MS.gene35465:CDS | 45.0% |
| !! | TAGACCTCTTGCTGTTCTCA+AGG | - | chr3.4:73745662-73745681 | None:intergenic | 45.0% |
| !! | TGGGGTTATTGACTCTTGGA+GGG | + | chr3.4:73745924-73745943 | MS.gene35465:CDS | 45.0% |
| !! | TTGGGGTTATTGACTCTTGG+AGG | + | chr3.4:73745923-73745942 | MS.gene35465:CDS | 45.0% |
| !!! | AGACGGTGTTTTTTGGAGGT+GGG | + | chr3.4:73744543-73744562 | MS.gene35465:CDS | 45.0% |
| !!! | ATTAGGCGGGTTGATGGTTT+TGG | - | chr3.4:73744251-73744270 | None:intergenic | 45.0% |
| !!! | CGGGTTGATGGTTTTGGTTT+GGG | - | chr3.4:73744245-73744264 | None:intergenic | 45.0% |
| !!! | CTTCAGACGGTGTTTTTTGG+AGG | + | chr3.4:73744539-73744558 | MS.gene35465:CDS | 45.0% |
| !!! | GGTTGGGTTGTTTTTGAGTG+AGG | - | chr3.4:73744321-73744340 | None:intergenic | 45.0% |
| !!! | TGGGTTGTTTTTGAGTGAGG+AGG | - | chr3.4:73744318-73744337 | None:intergenic | 45.0% |
| ACCGTTCCAACCATACTTGG+AGG | - | chr3.4:73744584-73744603 | None:intergenic | 50.0% | |
| AGCGTTTACGACAGAAAGGG+AGG | - | chr3.4:73744370-73744389 | None:intergenic | 50.0% | |
| ATACTTGGAGGAACCAGGGA+CGG | - | chr3.4:73744572-73744591 | None:intergenic | 50.0% | |
| CAACCATACTTGGAGGAACC+AGG | - | chr3.4:73744577-73744596 | None:intergenic | 50.0% | |
| CCTTTCTATGCCTTTGGCCT+CGG | + | chr3.4:73745481-73745500 | MS.gene35465:CDS | 50.0% | |
| CTGGTTCCTCCAAGTATGGT+TGG | + | chr3.4:73744575-73744594 | MS.gene35465:CDS | 50.0% | |
| CTGTCCTTGAGAACAGCAAG+AGG | + | chr3.4:73745655-73745674 | MS.gene35465:CDS | 50.0% | |
| GAAGGCAATGGAAATTCCCC+TGG | - | chr3.4:73745325-73745344 | None:intergenic | 50.0% | |
| GAGTTTAGGCGCGAAATCAC+TGG | - | chr3.4:73745023-73745042 | None:intergenic | 50.0% | |
| GCTTCATTGCCTCATCAGAC+TGG | + | chr3.4:73744860-73744879 | MS.gene35465:CDS | 50.0% | |
| GGCAGCGTTTACGACAGAAA+GGG | - | chr3.4:73744373-73744392 | None:intergenic | 50.0% | |
| GGGCGCTAGTGCACAAAAAA+TGG | - | chr3.4:73744225-73744244 | None:intergenic | 50.0% | |
| GTAAGCTGAAGAAGGGGTGA+TGG | - | chr3.4:73744342-73744361 | None:intergenic | 50.0% | |
| GTAGCTTCTTGGAGTGCAGA+AGG | - | chr3.4:73745955-73745974 | None:intergenic | 50.0% | |
| TCAGACTGGTGAAATGTGGG+AGG | + | chr3.4:73744874-73744893 | MS.gene35465:CDS | 50.0% | |
| TCTGGGAGTTCAAGCGTTTC+AGG | + | chr3.4:73744730-73744749 | MS.gene35465:CDS | 50.0% | |
| TGGCAGCGTTTACGACAGAA+AGG | - | chr3.4:73744374-73744393 | None:intergenic | 50.0% | |
| ! | ATGAGTTGGCTGTGCCTCAA+TGG | - | chr3.4:73744915-73744934 | None:intergenic | 50.0% |
| ! | CTGAAGAAGGGGTGATGGTT+GGG | - | chr3.4:73744337-73744356 | None:intergenic | 50.0% |
| !! | GAGGTTTTCAAGACCCAGGA+AGG | + | chr3.4:73745528-73745547 | MS.gene35465:CDS | 50.0% |
| !! | TCAGCGGATTGTGTCTCAGA+AGG | - | chr3.4:73745343-73745362 | None:intergenic | 50.0% |
| !! | TCTGGTTCTCTCTCTGGTTG+AGG | + | chr3.4:73745717-73745736 | MS.gene35465:CDS | 50.0% |
| !!! | CAGACGGTGTTTTTTGGAGG+TGG | + | chr3.4:73744542-73744561 | MS.gene35465:CDS | 50.0% |
| !!! | CCGCTTCAGACGGTGTTTTT+TGG | + | chr3.4:73744536-73744555 | MS.gene35465:CDS | 50.0% |
| !!! | GCGGGTTGATGGTTTTGGTT+TGG | - | chr3.4:73744246-73744265 | None:intergenic | 50.0% |
| ACTAGTAGAGCCGAGGCCAA+AGG | - | chr3.4:73745494-73745513 | None:intergenic | 55.0% | |
| CGATGGGGAAGTCACAGTAG+TGG | - | chr3.4:73744394-73744413 | None:intergenic | 55.0% | |
| GTCCCTGGTTCCTCCAAGTA+TGG | + | chr3.4:73744571-73744590 | MS.gene35465:CDS | 55.0% | |
| TGCAAAGACGCCGCTTCAGA+CGG | + | chr3.4:73744526-73744545 | MS.gene35465:CDS | 55.0% | |
| ! | AAGAGTTGTGGGAGGGCACA+TGG | + | chr3.4:73744764-73744783 | MS.gene35465:CDS | 55.0% |
| ! | CCGAGGCCAAAGGCATAGAA+AGG | - | chr3.4:73745484-73745503 | None:intergenic | 55.0% |
| ! | GAGGGCACATGGTTTGGATG+AGG | + | chr3.4:73744775-73744794 | MS.gene35465:CDS | 55.0% |
| ! | GCTGAAGAAGGGGTGATGGT+TGG | - | chr3.4:73744338-73744357 | None:intergenic | 55.0% |
| ! | TTGTGGGAGGGCACATGGTT+TGG | + | chr3.4:73744769-73744788 | MS.gene35465:CDS | 55.0% |
| !! | CAGCTCTCTGGTTCTCTCTC+TGG | + | chr3.4:73745711-73745730 | MS.gene35465:CDS | 55.0% |
| GACTTCCCCATCGTCGCTCT+CGG | + | chr3.4:73744401-73744420 | MS.gene35465:CDS | 60.0% | |
| AGCGCAGCCGAGAGCGACGA+TGG | - | chr3.4:73744411-73744430 | None:intergenic | 70.0% | |
| CGCAGCCGAGAGCGACGATG+GGG | - | chr3.4:73744409-73744428 | None:intergenic | 70.0% | |
| GCGCAGCCGAGAGCGACGAT+GGG | - | chr3.4:73744410-73744429 | None:intergenic | 70.0% | |
| TGGAGGTGGGACGCCGTCCC+TGG | + | chr3.4:73744556-73744575 | MS.gene35465:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 73744200 | 73745978 | 73744200 | ID=MS.gene35465 |
| chr3.4 | mRNA | 73744200 | 73745978 | 73744200 | ID=MS.gene35465.t1;Parent=MS.gene35465 |
| chr3.4 | exon | 73744200 | 73744984 | 73744200 | ID=MS.gene35465.t1.exon1;Parent=MS.gene35465.t1 |
| chr3.4 | CDS | 73744200 | 73744984 | 73744200 | ID=cds.MS.gene35465.t1;Parent=MS.gene35465.t1 |
| chr3.4 | exon | 73745315 | 73745978 | 73745315 | ID=MS.gene35465.t1.exon2;Parent=MS.gene35465.t1 |
| chr3.4 | CDS | 73745315 | 73745978 | 73745315 | ID=cds.MS.gene35465.t1;Parent=MS.gene35465.t1 |
| Gene Sequence |
| Protein sequence |
