AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052605


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052605.t1 MTR_3g075110 96.266 482 17 1 1 482 1 481 0.0 969
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052605.t1 AT5G63290 59.016 488 174 6 1 468 1 482 0.0 604

Find 115 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAACAAGGCACAAAATT+TGG 0.144991 3.3:-64793783 MS.gene052605:CDS
GAGACATTGAAGATGAAATT+TGG 0.164347 3.3:-64794131 MS.gene052605:CDS
TCTGGGAGTTCAAGCGTTTC+AGG 0.165044 3.3:-64794009 MS.gene052605:CDS
CATGTACTCATTCACCTTCC+TGG 0.233439 3.3:+64793197 None:intergenic
CGACATCAACAATTCTCTTT+TGG 0.234544 3.3:-64792929 MS.gene052605:CDS
GATTTCATAATGGTTATAAT+TGG 0.235080 3.3:+64793341 None:intergenic
CTATTAACTCATTTGATAAA+AGG 0.246147 3.3:+64792848 None:intergenic
GAGTTAATAGCCCTTGCTTT+TGG 0.270052 3.3:-64792835 MS.gene052605:CDS
ATTAGGCGGGTTGATGGTTT+TGG 0.273462 3.3:+64794491 None:intergenic
CATGAAATTCGTGGAAAATC+TGG 0.286286 3.3:-64793178 MS.gene052605:CDS
AAGTATGGTTGGAACGGTTT+TGG 0.291180 3.3:-64794153 MS.gene052605:CDS
AGACATTGAAGATGAAATTT+GGG 0.331218 3.3:-64794130 MS.gene052605:CDS
CAGCTCTCTGGTTCTCTCTC+TGG 0.344115 3.3:-64793028 MS.gene052605:CDS
AAATGTGGGAGGAAAGTTTA+AGG 0.354228 3.3:-64793854 MS.gene052605:CDS
TACAAGCCTTTCTATGCCTT+TGG 0.354998 3.3:-64793264 MS.gene052605:CDS
GGGAGTGAATAGAGTTTCTC+TGG 0.355835 3.3:-64794027 MS.gene052605:CDS
TTCGTGGAAAATCTGGAAAA+TGG 0.365028 3.3:-64793171 MS.gene052605:CDS
TTTGATAAAAGGAAACCATT+TGG 0.367470 3.3:+64792859 None:intergenic
GAGAGCTGCCAAATGATTCT+TGG 0.367558 3.3:+64793043 None:intergenic
GTCCCTGGTTCCTCCAAGTA+TGG 0.370338 3.3:-64794168 MS.gene052605:CDS
TGGAGGTGGGACGCCGTCCC+TGG 0.373141 3.3:-64794183 MS.gene052605:CDS
TTTGTTATTAGGCGGGTTGA+TGG 0.377434 3.3:+64794485 None:intergenic
GTAGACACAACTTTACCTAT+TGG 0.377880 3.3:-64793290 MS.gene052605:CDS
CCTTTCTATGCCTTTGGCCT+CGG 0.379342 3.3:-64793258 MS.gene052605:CDS
AAAAGTGTGGGGTTGAGAAT+TGG 0.383894 3.3:-64793917 MS.gene052605:CDS
TTGGGGTTATTGACTCTTGG+AGG 0.401602 3.3:-64792816 MS.gene052605:CDS
ATGTACTCATTCACCTTCCT+GGG 0.403580 3.3:+64793198 None:intergenic
AGAAGTTGTTGAAGAGTTGT+GGG 0.410136 3.3:-64793986 MS.gene052605:CDS
AGTAGCTGCTGATTTCATAA+TGG 0.410732 3.3:+64793331 None:intergenic
TGCTGAAATTTCGATGGAAA+TGG 0.412741 3.3:-64794096 MS.gene052605:CDS
TACGTTTGATTGTAAGAAGA+TGG 0.413518 3.3:-64794066 MS.gene052605:CDS
TTGTGGGAGGGCACATGGTT+TGG 0.414910 3.3:-64793970 MS.gene052605:CDS
AAGCGTTACCAAGAATCATT+TGG 0.417084 3.3:-64793051 MS.gene052605:CDS
TCTGGTTCTCTCTCTGGTTG+AGG 0.422048 3.3:-64793022 MS.gene052605:CDS
CTGAAGAAGGGGTGATGGTT+GGG 0.425240 3.3:+64794405 None:intergenic
TGGATCACTTAGCCTCATAT+AGG 0.428653 3.3:+64792879 None:intergenic
GAGAAGTTGTTGAAGAGTTG+TGG 0.438707 3.3:-64793987 MS.gene052605:CDS
GAAAGGCTTGTACTTCCAAT+AGG 0.443597 3.3:+64793275 None:intergenic
AAAACCGTTCCAACCATACT+TGG 0.446657 3.3:+64794155 None:intergenic
AGAATCATTTGGCAGCTCTC+TGG 0.455230 3.3:-64793040 MS.gene052605:CDS
GATGGAAGAGATGATGTTGT+TGG 0.466524 3.3:-64794048 MS.gene052605:CDS
GAGGGCACATGGTTTGGATG+AGG 0.485338 3.3:-64793964 MS.gene052605:CDS
AAAAGTGTTTGTTATTAGGC+GGG 0.488015 3.3:+64794478 None:intergenic
AGGTGAATGTAAGCTGAAGA+AGG 0.488519 3.3:+64794392 None:intergenic
GCTGAAGAAGGGGTGATGGT+TGG 0.488753 3.3:+64794404 None:intergenic
TGGGGTTATTGACTCTTGGA+GGG 0.489544 3.3:-64792815 MS.gene052605:CDS
GCTTCATTGCCTCATCAGAC+TGG 0.495628 3.3:-64793879 MS.gene052605:CDS
CAACCATACTTGGAGGAACC+AGG 0.499090 3.3:+64794165 None:intergenic
CTGGTTCCTCCAAGTATGGT+TGG 0.504709 3.3:-64794164 MS.gene052605:CDS
ACATGTCCACTCTCAACATA+AGG 0.504850 3.3:+64792991 None:intergenic
TCCTCCAAGTATGGTTGGAA+CGG 0.506169 3.3:-64794159 MS.gene052605:CDS
ATGGAAGAGATGATGTTGTT+GGG 0.509834 3.3:-64794047 MS.gene052605:CDS
GCGGAGCCGAGAGCGACGAT+GGG 0.516001 3.3:+64794332 None:intergenic
AAAAGAGAGTGGCCTATATG+AGG 0.521359 3.3:-64792891 MS.gene052605:CDS
GACTTCCCCATCGTCGCTCT+CGG 0.522224 3.3:-64794338 MS.gene052605:CDS
AAGAGTTGTGGGAGGGCACA+TGG 0.523910 3.3:-64793975 MS.gene052605:CDS
AGCGGAGCCGAGAGCGACGA+TGG 0.527821 3.3:+64794331 None:intergenic
TGGCTCTGCAGAGAAATCAA+TGG 0.537726 3.3:-64794263 MS.gene052605:CDS
GTGTCATAAACTACATTCAA+TGG 0.538852 3.3:-64794283 MS.gene052605:CDS
GTCGTTTGTTTGCGTTGAAG+CGG 0.539866 3.3:+64794313 None:intergenic
GGTGAATGTAAGCTGAAGAA+GGG 0.540772 3.3:+64794393 None:intergenic
GTCAATAACCCCAAAAGCAA+GGG 0.541226 3.3:+64792825 None:intergenic
TAATAGCAAGGACAAAGCAT+TGG 0.546969 3.3:-64793118 MS.gene052605:CDS
TAGACCTCTTGCTGTTCTCA+AGG 0.547538 3.3:+64793080 None:intergenic
AAGTTTAAGGCTCGCCATTG+AGG 0.549781 3.3:-64793841 MS.gene052605:CDS
ATGAGTTGGCTGTGCCTCAA+TGG 0.550891 3.3:+64793827 None:intergenic
CCGAGGCCAAAGGCATAGAA+AGG 0.554611 3.3:+64793258 None:intergenic
TGGCAGCGTTTACGACAGAA+AGG 0.557441 3.3:+64794368 None:intergenic
TATAAACCTTATGTTGAGAG+TGG 0.557941 3.3:-64792997 MS.gene052605:CDS
ATGAGGCTAAGTGATCCAAA+TGG 0.560677 3.3:-64792874 MS.gene052605:CDS
GTAGCTTCTTGGAGTGCAGA+AGG 0.561374 3.3:+64792787 None:intergenic
ACCGTTCCAACCATACTTGG+AGG 0.563000 3.3:+64794158 None:intergenic
TTCTTACAATCAAACGTACC+CGG 0.565207 3.3:+64794071 None:intergenic
AGTCAATAACCCCAAAAGCA+AGG 0.565995 3.3:+64792824 None:intergenic
TGCAAAGACGCCGCTTCAGA+CGG 0.568649 3.3:-64794213 MS.gene052605:CDS
AGTTGTTGAAGAGTTGTGGG+AGG 0.572758 3.3:-64793983 MS.gene052605:CDS
AACAAGGCACAAAATTTGGA+AGG 0.574125 3.3:-64793779 MS.gene052605:CDS
GAAGGCAATGGAAATTCCCC+TGG 0.579543 3.3:+64793417 None:intergenic
AATTTCGATGGAAATGGACC+CGG 0.583112 3.3:-64794090 MS.gene052605:CDS
CTCATCAGACTGGTGAAATG+TGG 0.586079 3.3:-64793869 MS.gene052605:CDS
TCATAAACAGAAACATGAGT+TGG 0.592813 3.3:+64793813 None:intergenic
GAATGAGTACATGAAATTCG+TGG 0.596236 3.3:-64793187 MS.gene052605:CDS
ACTAGTAGAGCCGAGGCCAA+AGG 0.596278 3.3:+64793248 None:intergenic
TCAGCGGATTGTGTCTCAGA+AGG 0.596735 3.3:+64793399 None:intergenic
CTGTCCTTGAGAACAGCAAG+AGG 0.597347 3.3:-64793084 MS.gene052605:CDS
ATCAGCAGCTACTGTAAGAG+TGG 0.597915 3.3:-64793321 MS.gene052605:CDS
ATTTCGATGGAAATGGACCC+GGG 0.599512 3.3:-64794089 MS.gene052605:CDS
GTAAGCTGAAGAAGGGGTGA+TGG 0.604094 3.3:+64794400 None:intergenic
GATTGTGTCTCAGAAGGCAA+TGG 0.604210 3.3:+64793405 None:intergenic
GGAGTGAATAGAGTTTCTCT+GGG 0.605409 3.3:-64794026 MS.gene052605:CDS
CACATTTCACCAGTCTGATG+AGG 0.607000 3.3:+64793870 None:intergenic
AATGTTAACAGGTATTCACC+AGG 0.607528 3.3:-64793435 MS.gene052605:intron
TGAAAGTGCTGAAATTTCGA+TGG 0.611357 3.3:-64794102 MS.gene052605:CDS
TGGTTTGGATGAGGTTCATG+AGG 0.613397 3.3:-64793955 MS.gene052605:CDS
GTTGTTGAAGAGTTGTGGGA+GGG 0.619959 3.3:-64793982 MS.gene052605:CDS
TCTTACAATCAAACGTACCC+GGG 0.621772 3.3:+64794072 None:intergenic
GGCAGCGTTTACGACAGAAA+GGG 0.622614 3.3:+64794369 None:intergenic
CGGAGCCGAGAGCGACGATG+GGG 0.623355 3.3:+64794333 None:intergenic
ATACTTGGAGGAACCAGGGA+CGG 0.624368 3.3:+64794170 None:intergenic
TATGATCTGCAAATTGAACA+AGG 0.624447 3.3:-64793795 MS.gene052605:CDS
TGATGACAACATTAATAGCA+AGG 0.635250 3.3:-64793130 MS.gene052605:CDS
TGAATGTAGTTTATGACACG+CGG 0.644338 3.3:+64794287 None:intergenic
GTGAATGTAAGCTGAAGAAG+GGG 0.649743 3.3:+64794394 None:intergenic
TCATCAGACTGGTGAAATGT+GGG 0.649858 3.3:-64793868 MS.gene052605:CDS
AACCATACTTGGAGGAACCA+GGG 0.649992 3.3:+64794166 None:intergenic
AGCGTTTACGACAGAAAGGG+AGG 0.660387 3.3:+64794372 None:intergenic
CGATGGGGAAGTCACAGTAG+TGG 0.663567 3.3:+64794348 None:intergenic
CAATAAAACTAGTAGAGCCG+AGG 0.664303 3.3:+64793241 None:intergenic
TGTTAACAGGTATTCACCAG+GGG 0.672471 3.3:-64793433 MS.gene052605:intron
ATGTTAACAGGTATTCACCA+GGG 0.678250 3.3:-64793434 MS.gene052605:intron
TCAGACTGGTGAAATGTGGG+AGG 0.678428 3.3:-64793865 MS.gene052605:CDS
GACATTGAAGATGAAATTTG+GGG 0.678951 3.3:-64794129 MS.gene052605:CDS
TTATGTTGAGAGTGGACATG+TGG 0.679713 3.3:-64792989 MS.gene052605:CDS
GAATGTAGTTTATGACACGC+GGG 0.684399 3.3:+64794288 None:intergenic
AACTGACTTAGAAAAGAGAG+TGG 0.701765 3.3:-64792902 MS.gene052605:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTGGTTTAATTTTTA+AGG - chr3.3:64793823-64793842 MS.gene052605:CDS 10.0%
!! AAGTAAATACAAATAATAAG+TGG + chr3.3:64793728-64793747 None:intergenic 15.0%
!! ATTGATATAGTTAAAAAGTG+TGG - chr3.3:64793392-64793411 MS.gene052605:CDS 20.0%
!! CTATTAACTCATTTGATAAA+AGG + chr3.3:64794477-64794496 None:intergenic 20.0%
!! GATTTCATAATGGTTATAAT+TGG + chr3.3:64793984-64794003 None:intergenic 20.0%
!! TAATAAGTAATATTCCTAAC+AGG - chr3.3:64793665-64793684 MS.gene052605:intron 20.0%
!!! TTATAATGATGATGATGATT+TGG - chr3.3:64793850-64793869 MS.gene052605:CDS 20.0%
!!! TTGAAAAAGTGTTTGTTATT+AGG + chr3.3:64792851-64792870 None:intergenic 20.0%
!!! TTGATATAGTTAAAAAGTGT+GGG - chr3.3:64793393-64793412 MS.gene052605:CDS 20.0%
! AGACATTGAAGATGAAATTT+GGG - chr3.3:64793192-64793211 MS.gene052605:CDS 25.0%
! TGTAACTTTATCGATGAAAT+TGG - chr3.3:64793770-64793789 MS.gene052605:intron 25.0%
! TTTGATAAAAGGAAACCATT+TGG + chr3.3:64794466-64794485 None:intergenic 25.0%
!! TGATATAGTTAAAAAGTGTG+GGG - chr3.3:64793394-64793413 MS.gene052605:CDS 25.0%
!!! AAAAAGTGTTTGTTATTAGG+CGG + chr3.3:64792848-64792867 None:intergenic 25.0%
!!! TAGCAGCATTGATAATTTTT+TGG - chr3.3:64793809-64793828 MS.gene052605:CDS 25.0%
AACTTTATCGATGAAATTGG+TGG - chr3.3:64793773-64793792 MS.gene052605:intron 30.0%
ATTGAACAAGGCACAAAATT+TGG - chr3.3:64793539-64793558 MS.gene052605:intron 30.0%
ATTTACTCGAGTGACAAAAT+AGG + chr3.3:64793640-64793659 None:intergenic 30.0%
GACATTGAAGATGAAATTTG+GGG - chr3.3:64793193-64793212 MS.gene052605:CDS 30.0%
GAGACATTGAAGATGAAATT+TGG - chr3.3:64793191-64793210 MS.gene052605:CDS 30.0%
GAGTGACAAAATAGGAAAAA+GGG + chr3.3:64793632-64793651 None:intergenic 30.0%
GTGTCATAAACTACATTCAA+TGG - chr3.3:64793039-64793058 MS.gene052605:CDS 30.0%
TACGTTTGATTGTAAGAAGA+TGG - chr3.3:64793256-64793275 MS.gene052605:CDS 30.0%
TAGTCGCTAGTGTAAAATAT+AGG + chr3.3:64793581-64793600 None:intergenic 30.0%
TATAAACCTTATGTTGAGAG+TGG - chr3.3:64794325-64794344 MS.gene052605:CDS 30.0%
TATGATCTGCAAATTGAACA+AGG - chr3.3:64793527-64793546 MS.gene052605:intron 30.0%
TATTTACTTAAGCGACAAGA+CGG - chr3.3:64793739-64793758 MS.gene052605:intron 30.0%
TCATAAACAGAAACATGAGT+TGG + chr3.3:64793512-64793531 None:intergenic 30.0%
TGATGACAACATTAATAGCA+AGG - chr3.3:64794192-64794211 MS.gene052605:CDS 30.0%
! ATTTTTATACGATGGCTTCA+AGG - chr3.3:64793945-64793964 MS.gene052605:CDS 30.0%
!! AAAAGTGTTTGTTATTAGGC+GGG + chr3.3:64792847-64792866 None:intergenic 30.0%
AAAATTTGGAAGGCTGTAAG+TGG - chr3.3:64793553-64793572 MS.gene052605:intron 35.0%
AAATGTGGGAGGAAAGTTTA+AGG - chr3.3:64793468-64793487 MS.gene052605:intron 35.0%
AACAAGGCACAAAATTTGGA+AGG - chr3.3:64793543-64793562 MS.gene052605:intron 35.0%
AAGCGTTACCAAGAATCATT+TGG - chr3.3:64794271-64794290 MS.gene052605:CDS 35.0%
AATGTTAACAGGTATTCACC+AGG - chr3.3:64793887-64793906 MS.gene052605:CDS 35.0%
AGAAGTTGTTGAAGAGTTGT+GGG - chr3.3:64793336-64793355 MS.gene052605:CDS 35.0%
AGCCATCGTATAAAAATCAG+CGG + chr3.3:64793942-64793961 None:intergenic 35.0%
ATGGAAGAGATGATGTTGTT+GGG - chr3.3:64793275-64793294 MS.gene052605:CDS 35.0%
ATGTTAACAGGTATTCACCA+GGG - chr3.3:64793888-64793907 MS.gene052605:CDS 35.0%
CATGAAATTCGTGGAAAATC+TGG - chr3.3:64794144-64794163 MS.gene052605:CDS 35.0%
CGAGTGACAAAATAGGAAAA+AGG + chr3.3:64793633-64793652 None:intergenic 35.0%
CTGAAGGTGAAAATGTTAAC+AGG - chr3.3:64793876-64793895 MS.gene052605:CDS 35.0%
GAATGAGTACATGAAATTCG+TGG - chr3.3:64794135-64794154 MS.gene052605:CDS 35.0%
GTAGACACAACTTTACCTAT+TGG - chr3.3:64794032-64794051 MS.gene052605:CDS 35.0%
TAATAGCAAGGACAAAGCAT+TGG - chr3.3:64794204-64794223 MS.gene052605:CDS 35.0%
TGAATGTAGTTTATGACACG+CGG + chr3.3:64793038-64793057 None:intergenic 35.0%
TGCTGAAATTTCGATGGAAA+TGG - chr3.3:64793226-64793245 MS.gene052605:CDS 35.0%
TTCGTGGAAAATCTGGAAAA+TGG - chr3.3:64794151-64794170 MS.gene052605:CDS 35.0%
TTCTTACAATCAAACGTACC+CGG + chr3.3:64793254-64793273 None:intergenic 35.0%
! AACTGACTTAGAAAAGAGAG+TGG - chr3.3:64794420-64794439 MS.gene052605:CDS 35.0%
! CGACATCAACAATTCTCTTT+TGG - chr3.3:64794393-64794412 MS.gene052605:CDS 35.0%
!! AGTAGCTGCTGATTTCATAA+TGG + chr3.3:64793994-64794013 None:intergenic 35.0%
!! AGTTAATAGCCCTTGCTTTT+GGG - chr3.3:64794488-64794507 MS.gene052605:CDS 35.0%
!! TGAAAGTGCTGAAATTTCGA+TGG - chr3.3:64793220-64793239 MS.gene052605:CDS 35.0%
!!! ATCCGCTGATTTTTATACGA+TGG - chr3.3:64793937-64793956 MS.gene052605:CDS 35.0%
!!! CTAGTTTTATTGGTGGTTTG+AGG - chr3.3:64794092-64794111 MS.gene052605:CDS 35.0%
AAAACCGTTCCAACCATACT+TGG + chr3.3:64793170-64793189 None:intergenic 40.0%
AAAAGAGAGTGGCCTATATG+AGG - chr3.3:64794431-64794450 MS.gene052605:CDS 40.0%
AATTTCGATGGAAATGGACC+CGG - chr3.3:64793232-64793251 MS.gene052605:CDS 40.0%
ACATGTCCACTCTCAACATA+AGG + chr3.3:64794334-64794353 None:intergenic 40.0%
AGGTGAATGTAAGCTGAAGA+AGG + chr3.3:64792933-64792952 None:intergenic 40.0%
AGTCAATAACCCCAAAAGCA+AGG + chr3.3:64794501-64794520 None:intergenic 40.0%
ATGAGGCTAAGTGATCCAAA+TGG - chr3.3:64794448-64794467 MS.gene052605:CDS 40.0%
ATGTACTCATTCACCTTCCT+GGG + chr3.3:64794127-64794146 None:intergenic 40.0%
CAATAAAACTAGTAGAGCCG+AGG + chr3.3:64794084-64794103 None:intergenic 40.0%
CGAATGTGACAAAACGCTAA+AGG - chr3.3:64793689-64793708 MS.gene052605:intron 40.0%
GAAAGGCTTGTACTTCCAAT+AGG + chr3.3:64794050-64794069 None:intergenic 40.0%
GAATGTAGTTTATGACACGC+GGG + chr3.3:64793037-64793056 None:intergenic 40.0%
GAGAAGTTGTTGAAGAGTTG+TGG - chr3.3:64793335-64793354 MS.gene052605:CDS 40.0%
GATGGAAGAGATGATGTTGT+TGG - chr3.3:64793274-64793293 MS.gene052605:CDS 40.0%
GGAGTGAATAGAGTTTCTCT+GGG - chr3.3:64793296-64793315 MS.gene052605:CDS 40.0%
GGTGAATGTAAGCTGAAGAA+GGG + chr3.3:64792932-64792951 None:intergenic 40.0%
GTCAATAACCCCAAAAGCAA+GGG + chr3.3:64794500-64794519 None:intergenic 40.0%
GTGAATGTAAGCTGAAGAAG+GGG + chr3.3:64792931-64792950 None:intergenic 40.0%
TACAAGCCTTTCTATGCCTT+TGG - chr3.3:64794058-64794077 MS.gene052605:CDS 40.0%
TCATCAGACTGGTGAAATGT+GGG - chr3.3:64793454-64793473 MS.gene052605:intron 40.0%
TCTTACAATCAAACGTACCC+GGG + chr3.3:64793253-64793272 None:intergenic 40.0%
TGGATCACTTAGCCTCATAT+AGG + chr3.3:64794446-64794465 None:intergenic 40.0%
TGTTAACAGGTATTCACCAG+GGG - chr3.3:64793889-64793908 MS.gene052605:CDS 40.0%
TTATGTTGAGAGTGGACATG+TGG - chr3.3:64794333-64794352 MS.gene052605:CDS 40.0%
TTTGTCACATTCGTCCTGTT+AGG + chr3.3:64793682-64793701 None:intergenic 40.0%
! AAAAGTGTGGGGTTGAGAAT+TGG - chr3.3:64793405-64793424 MS.gene052605:CDS 40.0%
! AAGTATGGTTGGAACGGTTT+TGG - chr3.3:64793169-64793188 MS.gene052605:CDS 40.0%
! GAGTTAATAGCCCTTGCTTT+TGG - chr3.3:64794487-64794506 MS.gene052605:CDS 40.0%
! GATGATGATTTGGAAGCTGA+AGG - chr3.3:64793860-64793879 MS.gene052605:CDS 40.0%
!! GTTAATAGCCCTTGCTTTTG+GGG - chr3.3:64794489-64794508 MS.gene052605:CDS 40.0%
!! TTTGTTATTAGGCGGGTTGA+TGG + chr3.3:64792840-64792859 None:intergenic 40.0%
!!! CTCGGCTCTACTAGTTTTAT+TGG - chr3.3:64794082-64794101 MS.gene052605:CDS 40.0%
!!! CTTTTGGGGTTATTGACTCT+TGG - chr3.3:64794503-64794522 MS.gene052605:CDS 40.0%
!!! GGCTCTACTAGTTTTATTGG+TGG - chr3.3:64794085-64794104 MS.gene052605:CDS 40.0%
AACCATACTTGGAGGAACCA+GGG + chr3.3:64793159-64793178 None:intergenic 45.0%
AGAATCATTTGGCAGCTCTC+TGG - chr3.3:64794282-64794301 MS.gene052605:CDS 45.0%
AGTTGTTGAAGAGTTGTGGG+AGG - chr3.3:64793339-64793358 MS.gene052605:CDS 45.0%
ATCAGCAGCTACTGTAAGAG+TGG - chr3.3:64794001-64794020 MS.gene052605:CDS 45.0%
ATTTCGATGGAAATGGACCC+GGG - chr3.3:64793233-64793252 MS.gene052605:CDS 45.0%
CACATTTCACCAGTCTGATG+AGG + chr3.3:64793455-64793474 None:intergenic 45.0%
CATGTACTCATTCACCTTCC+TGG + chr3.3:64794128-64794147 None:intergenic 45.0%
CCAAAAAACACCGTCTGAAG+CGG + chr3.3:64793122-64793141 None:intergenic 45.0%
CTCATCAGACTGGTGAAATG+TGG - chr3.3:64793453-64793472 MS.gene052605:intron 45.0%
GAGAGCTGCCAAATGATTCT+TGG + chr3.3:64794282-64794301 None:intergenic 45.0%
GATTGTGTCTCAGAAGGCAA+TGG + chr3.3:64793920-64793939 None:intergenic 45.0%
GGCGCTAGTGCACAAAAAAT+GGG + chr3.3:64792807-64792826 None:intergenic 45.0%
GGGAGTGAATAGAGTTTCTC+TGG - chr3.3:64793295-64793314 MS.gene052605:CDS 45.0%
GTCGTTTGTTTGCGTTGAAG+CGG + chr3.3:64793012-64793031 None:intergenic 45.0%
GTTGTTGAAGAGTTGTGGGA+GGG - chr3.3:64793340-64793359 MS.gene052605:CDS 45.0%
TCCTCCAAGTATGGTTGGAA+CGG - chr3.3:64793163-64793182 MS.gene052605:CDS 45.0%
! AAGTTTAAGGCTCGCCATTG+AGG - chr3.3:64793481-64793500 MS.gene052605:intron 45.0%
! AGGAAAAAGGGTGTGAGTTC+AGG + chr3.3:64793620-64793639 None:intergenic 45.0%
! GAGTGGACATGTGGTTTTCT+TGG - chr3.3:64794342-64794361 MS.gene052605:CDS 45.0%
! TGGCTCTGCAGAGAAATCAA+TGG - chr3.3:64793059-64793078 MS.gene052605:CDS 45.0%
! TGGTTTGGATGAGGTTCATG+AGG - chr3.3:64793367-64793386 MS.gene052605:CDS 45.0%
! TGGTTTTCTTGGACGAGCAA+AGG - chr3.3:64794353-64794372 MS.gene052605:CDS 45.0%
!! GAGGAGTTTTGTCGAACAGT+TGG + chr3.3:64792882-64792901 None:intergenic 45.0%
!! GTTTGAGGTTTTCAAGACCC+AGG - chr3.3:64794107-64794126 MS.gene052605:CDS 45.0%
!! TAGACCTCTTGCTGTTCTCA+AGG + chr3.3:64794245-64794264 None:intergenic 45.0%
!! TGGGGTTATTGACTCTTGGA+GGG - chr3.3:64794507-64794526 MS.gene052605:CDS 45.0%
!! TTGGGGTTATTGACTCTTGG+AGG - chr3.3:64794506-64794525 MS.gene052605:CDS 45.0%
!!! AGACGGTGTTTTTTGGAGGT+GGG - chr3.3:64793126-64793145 MS.gene052605:CDS 45.0%
!!! ATTAGGCGGGTTGATGGTTT+TGG + chr3.3:64792834-64792853 None:intergenic 45.0%
!!! CGGGTTGATGGTTTTGGTTT+GGG + chr3.3:64792828-64792847 None:intergenic 45.0%
!!! CTTCAGACGGTGTTTTTTGG+AGG - chr3.3:64793122-64793141 MS.gene052605:CDS 45.0%
!!! GGTTGGGTTGTTTTTGAGTG+AGG + chr3.3:64792904-64792923 None:intergenic 45.0%
!!! TGGGTTGTTTTTGAGTGAGG+AGG + chr3.3:64792901-64792920 None:intergenic 45.0%
ACCGTTCCAACCATACTTGG+AGG + chr3.3:64793167-64793186 None:intergenic 50.0%
AGCGTTTACGACAGAAAGGG+AGG + chr3.3:64792953-64792972 None:intergenic 50.0%
ATACTTGGAGGAACCAGGGA+CGG + chr3.3:64793155-64793174 None:intergenic 50.0%
CAACCATACTTGGAGGAACC+AGG + chr3.3:64793160-64793179 None:intergenic 50.0%
CCTTTCTATGCCTTTGGCCT+CGG - chr3.3:64794064-64794083 MS.gene052605:CDS 50.0%
CTGGTTCCTCCAAGTATGGT+TGG - chr3.3:64793158-64793177 MS.gene052605:CDS 50.0%
CTGTCCTTGAGAACAGCAAG+AGG - chr3.3:64794238-64794257 MS.gene052605:CDS 50.0%
GAAGGCAATGGAAATTCCCC+TGG + chr3.3:64793908-64793927 None:intergenic 50.0%
GCTTCATTGCCTCATCAGAC+TGG - chr3.3:64793443-64793462 MS.gene052605:intron 50.0%
GGCAGCGTTTACGACAGAAA+GGG + chr3.3:64792956-64792975 None:intergenic 50.0%
GGGCGCTAGTGCACAAAAAA+TGG + chr3.3:64792808-64792827 None:intergenic 50.0%
GTAAGCTGAAGAAGGGGTGA+TGG + chr3.3:64792925-64792944 None:intergenic 50.0%
GTAGCTTCTTGGAGTGCAGA+AGG + chr3.3:64794538-64794557 None:intergenic 50.0%
TCAGACTGGTGAAATGTGGG+AGG - chr3.3:64793457-64793476 MS.gene052605:intron 50.0%
TCTGGGAGTTCAAGCGTTTC+AGG - chr3.3:64793313-64793332 MS.gene052605:CDS 50.0%
TGGCAGCGTTTACGACAGAA+AGG + chr3.3:64792957-64792976 None:intergenic 50.0%
! ATGAGTTGGCTGTGCCTCAA+TGG + chr3.3:64793498-64793517 None:intergenic 50.0%
! CTGAAGAAGGGGTGATGGTT+GGG + chr3.3:64792920-64792939 None:intergenic 50.0%
!! GAGGTTTTCAAGACCCAGGA+AGG - chr3.3:64794111-64794130 MS.gene052605:CDS 50.0%
!! TCAGCGGATTGTGTCTCAGA+AGG + chr3.3:64793926-64793945 None:intergenic 50.0%
!! TCTGGTTCTCTCTCTGGTTG+AGG - chr3.3:64794300-64794319 MS.gene052605:CDS 50.0%
!!! CAGACGGTGTTTTTTGGAGG+TGG - chr3.3:64793125-64793144 MS.gene052605:CDS 50.0%
!!! CCGCTTCAGACGGTGTTTTT+TGG - chr3.3:64793119-64793138 MS.gene052605:CDS 50.0%
!!! GCGGGTTGATGGTTTTGGTT+TGG + chr3.3:64792829-64792848 None:intergenic 50.0%
ACTAGTAGAGCCGAGGCCAA+AGG + chr3.3:64794077-64794096 None:intergenic 55.0%
CGATGGGGAAGTCACAGTAG+TGG + chr3.3:64792977-64792996 None:intergenic 55.0%
GAGTTCAGGCGCGAAATCAC+TGG + chr3.3:64793606-64793625 None:intergenic 55.0%
GTCCCTGGTTCCTCCAAGTA+TGG - chr3.3:64793154-64793173 MS.gene052605:CDS 55.0%
TGCAAAGACGCCGCTTCAGA+CGG - chr3.3:64793109-64793128 MS.gene052605:CDS 55.0%
! AAGAGTTGTGGGAGGGCACA+TGG - chr3.3:64793347-64793366 MS.gene052605:CDS 55.0%
! CCGAGGCCAAAGGCATAGAA+AGG + chr3.3:64794067-64794086 None:intergenic 55.0%
! GAGGGCACATGGTTTGGATG+AGG - chr3.3:64793358-64793377 MS.gene052605:CDS 55.0%
! GCTGAAGAAGGGGTGATGGT+TGG + chr3.3:64792921-64792940 None:intergenic 55.0%
! TTGTGGGAGGGCACATGGTT+TGG - chr3.3:64793352-64793371 MS.gene052605:CDS 55.0%
!! CAGCTCTCTGGTTCTCTCTC+TGG - chr3.3:64794294-64794313 MS.gene052605:CDS 55.0%
GACTTCCCCATCGTCGCTCT+CGG - chr3.3:64792984-64793003 MS.gene052605:CDS 60.0%
AGCGGAGCCGAGAGCGACGA+TGG + chr3.3:64792994-64793013 None:intergenic 70.0%
CGGAGCCGAGAGCGACGATG+GGG + chr3.3:64792992-64793011 None:intergenic 70.0%
GCGGAGCCGAGAGCGACGAT+GGG + chr3.3:64792993-64793012 None:intergenic 70.0%
TGGAGGTGGGACGCCGTCCC+TGG - chr3.3:64793139-64793158 MS.gene052605:CDS 75.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 64792783 64794561 64792783 ID=MS.gene052605
chr3.3 mRNA 64792783 64794561 64792783 ID=MS.gene052605.t1;Parent=MS.gene052605
chr3.3 exon 64793777 64794561 64793777 ID=MS.gene052605.t1.exon1;Parent=MS.gene052605.t1
chr3.3 CDS 64793777 64794561 64793777 ID=cds.MS.gene052605.t1;Parent=MS.gene052605.t1
chr3.3 exon 64792783 64793446 64792783 ID=MS.gene052605.t1.exon2;Parent=MS.gene052605.t1
chr3.3 CDS 64792783 64793446 64792783 ID=cds.MS.gene052605.t1;Parent=MS.gene052605.t1
Gene Sequence

>MS.gene052605

ATGCTAAAATCAACATTCACACCCATTTTTTGTGCACTAGCGCCCAAACCAAAACCATCAACCCGCCTAATAACAAACACTTTTTCAAACAGCATACCAACTGTTCGACAAAACTCCTCCTCACTCAAAAACAACCCAACCATCACCCCTTCTTCAGCTTACATTCACCTCCCTTTCTGTCGTAAACGCTGCCACTACTGTGACTTCCCCATCGTCGCTCTCGGCTCCGCTTCAACGCAAACAAACGACGACCCGCGTGTCATAAACTACATTCAATGGCTCTGCAGAGAAATCAATGGAACTAAAATAGAAGATGAACTTGATTCTGCAAAGACGCCGCTTCAGACGGTGTTTTTTGGAGGTGGGACGCCGTCCCTGGTTCCTCCAAGTATGGTTGGAACGGTTTTGGAGACATTGAAGATGAAATTTGGGGTGAGTGAAAGTGCTGAAATTTCGATGGAAATGGACCCGGGTACGTTTGATTGTAAGAAGATGGAAGAGATGATGTTGTTGGGAGTGAATAGAGTTTCTCTGGGAGTTCAAGCGTTTCAGGAGAAGTTGTTGAAGAGTTGTGGGAGGGCACATGGTTTGGATGAGGTTCATGAGGCTATTGATATAGTTAAAAAGTGTGGGGTTGAGAATTGGAGTATTGATCTTATTGCTTCATTGCCTCATCAGACTGGTGAAATGTGGGAGGAAAGTTTAAGGCTCGCCATTGAGGCACAGCCAACTCATGTTTCTGTTTATGATCTGCAAATTGAACAAGGCACAAAATTTGGAAGGCTGTAAGTGGCACCTATATTTTACACTAGCGACTAAACCAGTGATTTCGCGCCTGAACTCACACCCTTTTTCCTATTTTGTCACTCGAGTAAATGAAAATAATAAGTAATATTCCTAACAGGACGAATGTGACAAAACGCTAAAGGCTACTTGCTATTACCACTTATTATTTGTATTTACTTAAGCGACAAGACGGAAAAAGTGTGTAACTTTATCGATGAAATTGGTGGTTTACTCTTACACTAGCAGCATTGATAATTTTTTGGTTTAATTTTTAAGGTTTATTATAATGATGATGATGATTTGGAAGCTGAAGGTGAAAATGTTAACAGGTATTCACCAGGGGAATTTCCATTGCCTTCTGAGACACAATCCGCTGATTTTTATACGATGGCTTCAAGGATGCTTCGTGATGCCAATTATAACCATTATGAAATCAGCAGCTACTGTAAGAGTGGTTATGAGTGTAGACACAACTTTACCTATTGGAAGTACAAGCCTTTCTATGCCTTTGGCCTCGGCTCTACTAGTTTTATTGGTGGTTTGAGGTTTTCAAGACCCAGGAAGGTGAATGAGTACATGAAATTCGTGGAAAATCTGGAAAATGGATCAGTAAATAGCTCATCTGATGACAACATTAATAGCAAGGACAAAGCATTGGATATTGTGATGCTGTCCTTGAGAACAGCAAGAGGTCTAGACTTGAAGCGTTACCAAGAATCATTTGGCAGCTCTCTGGTTCTCTCTCTGGTTGAGGTTTATAAACCTTATGTTGAGAGTGGACATGTGGTTTTCTTGGACGAGCAAAGGAGAGCTGTTAGAATAGACGACATCAACAATTCTCTTTTGGACGAAACTGACTTAGAAAAGAGAGTGGCCTATATGAGGCTAAGTGATCCAAATGGTTTCCTTTTATCAAATGAGTTAATAGCCCTTGCTTTTGGGGTTATTGACTCTTGGAGGGATTATCCTTCTGCACTCCAAGAAGCTACCTGA

Protein sequence

>MS.gene052605.t1

MLKSTFTPIFCALAPKPKPSTRLITNTFSNSIPTVRQNSSSLKNNPTITPSSAYIHLPFCRKRCHYCDFPIVALGSASTQTNDDPRVINYIQWLCREINGTKIEDELDSAKTPLQTVFFGGGTPSLVPPSMVGTVLETLKMKFGVSESAEISMEMDPGTFDCKKMEEMMLLGVNRVSLGVQAFQEKLLKSCGRAHGLDEVHEAIDIVKKCGVENWSIDLIASLPHQTGEMWEESLRLAIEAQPTHVSVYDLQIEQGTKFGRLYSPGEFPLPSETQSADFYTMASRMLRDANYNHYEISSYCKSGYECRHNFTYWKYKPFYAFGLGSTSFIGGLRFSRPRKVNEYMKFVENLENGSVNSSSDDNINSKDKALDIVMLSLRTARGLDLKRYQESFGSSLVLSLVEVYKPYVESGHVVFLDEQRRAVRIDDINNSLLDETDLEKRVAYMRLSDPNGFLLSNELIALAFGVIDSWRDYPSALQEAT