Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35529.t1 | XP_013464960.1 | 95 | 754 | 36 | 1 | 13 | 764 | 106 | 859 | 0.00E+00 | 1410.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35529.t1 | Q9XIN0 | 39.2 | 762 | 231 | 20 | 13 | 764 | 85 | 624 | 1.5e-112 | 408.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35529.t1 | A0A072VLH4 | 95.0 | 754 | 36 | 1 | 13 | 764 | 106 | 859 | 0.0e+00 | 1410.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene35529 | 0.811964 | 5.38E-51 | -1.69E-46 |
| MS.gene050689 | MS.gene35529 | 0.82266 | 2.10E-53 | -1.69E-46 |
| MS.gene051363 | MS.gene35529 | 0.814102 | 1.83E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene35529 | 0.811886 | 5.59E-51 | -1.69E-46 |
| MS.gene053541 | MS.gene35529 | 0.980721 | 7.04E-151 | -1.69E-46 |
| MS.gene053542 | MS.gene35529 | 0.981312 | 2.77E-152 | -1.69E-46 |
| MS.gene05364 | MS.gene35529 | 0.836274 | 1.03E-56 | -1.69E-46 |
| MS.gene054142 | MS.gene35529 | 0.815996 | 6.94E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene35529 | 0.802431 | 5.63E-49 | -1.69E-46 |
| MS.gene056254 | MS.gene35529 | 0.828821 | 7.26E-55 | -1.69E-46 |
| MS.gene057082 | MS.gene35529 | 0.803482 | 3.41E-49 | -1.69E-46 |
| MS.gene057132 | MS.gene35529 | 0.806545 | 7.81E-50 | -1.69E-46 |
| MS.gene057694 | MS.gene35529 | 0.800114 | 1.68E-48 | -1.69E-46 |
| MS.gene057855 | MS.gene35529 | 0.80277 | 4.79E-49 | -1.69E-46 |
| MS.gene058292 | MS.gene35529 | 0.806027 | 1.00E-49 | -1.69E-46 |
| MS.gene058634 | MS.gene35529 | 0.813854 | 2.07E-51 | -1.69E-46 |
| MS.gene058781 | MS.gene35529 | 0.81232 | 4.50E-51 | -1.69E-46 |
| MS.gene058783 | MS.gene35529 | 0.812697 | 3.72E-51 | -1.69E-46 |
| MS.gene05978 | MS.gene35529 | 0.838058 | 3.60E-57 | -1.69E-46 |
| MS.gene060355 | MS.gene35529 | 0.8085 | 3.00E-50 | -1.69E-46 |
| MS.gene060933 | MS.gene35529 | 0.800633 | 1.32E-48 | -1.69E-46 |
| MS.gene060935 | MS.gene35529 | 0.831089 | 2.03E-55 | -1.69E-46 |
| MS.gene060937 | MS.gene35529 | 0.815413 | 9.36E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35529.t1 | MTR_2g087295 | 94.960 | 754 | 36 | 1 | 13 | 764 | 106 | 859 | 0.0 | 1461 |
| MS.gene35529.t1 | MTR_4g051565 | 60.692 | 809 | 249 | 18 | 13 | 764 | 14 | 810 | 0.0 | 877 |
| MS.gene35529.t1 | MTR_4g051565 | 60.692 | 809 | 249 | 18 | 13 | 764 | 102 | 898 | 0.0 | 875 |
| MS.gene35529.t1 | MTR_1g077640 | 59.184 | 196 | 75 | 1 | 571 | 761 | 555 | 750 | 1.93e-66 | 235 |
| MS.gene35529.t1 | MTR_7g096650 | 55.729 | 192 | 81 | 2 | 573 | 760 | 270 | 461 | 4.66e-58 | 205 |
| MS.gene35529.t1 | MTR_7g096650 | 55.729 | 192 | 81 | 2 | 573 | 760 | 446 | 637 | 1.18e-56 | 205 |
| MS.gene35529.t1 | MTR_7g096650 | 55.729 | 192 | 81 | 2 | 573 | 760 | 466 | 657 | 1.94e-56 | 205 |
| MS.gene35529.t1 | MTR_1g070180 | 52.062 | 194 | 87 | 3 | 573 | 760 | 466 | 659 | 5.36e-54 | 198 |
| MS.gene35529.t1 | MTR_7g063470 | 45.714 | 175 | 92 | 2 | 577 | 751 | 445 | 616 | 4.33e-43 | 166 |
| MS.gene35529.t1 | MTR_7g063470 | 45.714 | 175 | 92 | 2 | 577 | 751 | 495 | 666 | 6.02e-43 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35529.t1 | AT2G27230 | 53.109 | 386 | 120 | 9 | 386 | 764 | 293 | 624 | 2.05e-113 | 358 |
| MS.gene35529.t1 | AT2G27230 | 67.033 | 91 | 30 | 0 | 13 | 103 | 85 | 175 | 4.70e-34 | 139 |
| MS.gene35529.t1 | AT2G27230 | 53.109 | 386 | 120 | 9 | 386 | 764 | 293 | 624 | 2.05e-113 | 358 |
| MS.gene35529.t1 | AT2G27230 | 67.033 | 91 | 30 | 0 | 13 | 103 | 85 | 175 | 4.70e-34 | 139 |
| MS.gene35529.t1 | AT1G64625 | 51.121 | 223 | 90 | 4 | 542 | 764 | 294 | 497 | 3.82e-62 | 217 |
| MS.gene35529.t1 | AT1G64625 | 51.121 | 223 | 90 | 4 | 542 | 764 | 308 | 511 | 7.38e-62 | 217 |
| MS.gene35529.t1 | AT1G64625 | 51.121 | 223 | 90 | 4 | 542 | 764 | 318 | 521 | 1.05e-61 | 216 |
| MS.gene35529.t1 | AT1G06150 | 55.376 | 186 | 81 | 1 | 577 | 760 | 543 | 728 | 1.85e-59 | 215 |
| MS.gene35529.t1 | AT1G06150 | 54.787 | 188 | 81 | 2 | 577 | 760 | 543 | 730 | 8.69e-58 | 210 |
| MS.gene35529.t1 | AT2G31280 | 54.301 | 186 | 76 | 2 | 577 | 760 | 535 | 713 | 6.96e-56 | 204 |
| MS.gene35529.t1 | AT2G31280 | 50.246 | 203 | 75 | 2 | 577 | 760 | 535 | 730 | 4.69e-54 | 199 |
| MS.gene35529.t1 | AT2G31280 | 48.731 | 197 | 70 | 2 | 577 | 749 | 507 | 696 | 1.22e-48 | 184 |
| MS.gene35529.t1 | AT1G64625 | 52.174 | 115 | 47 | 3 | 542 | 656 | 308 | 414 | 8.86e-27 | 114 |
Find 0 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATGTAGATTATTAGTA+AGG | + | 14541:3609-3628 | MS.gene35529:intron | 15.0% |
| !! | ATATAACATCACATAATTTA+AGG | - | 14541:4054-4073 | MS.gene35529:intergenic | 15.0% |
| !! | TATAACATCACATAATTTAA+GGG | - | 14541:4053-4072 | MS.gene35529:intergenic | 15.0% |
| !! | TATAATCTTTAACAAAGAAA+AGG | - | 14541:1254-1273 | MS.gene35529:intergenic | 15.0% |
| !! | TGTAGATATATAAAATTCTT+TGG | + | 14541:3775-3794 | MS.gene35529:intron | 15.0% |
| !!! | AACTTTTCTTATATATGAAA+TGG | + | 14541:4078-4097 | MS.gene35529:intron | 15.0% |
| !!! | AATTTTAATGATACAGATAA+TGG | + | 14541:1566-1585 | MS.gene35529:intron | 15.0% |
| !!! | ATACTTTTATTATGTAAGTT+TGG | + | 14541:1271-1290 | MS.gene35529:intron | 15.0% |
| !! | AGATTTGAATCAAAATTTGA+GGG | - | 14541:1900-1919 | MS.gene35529:intergenic | 20.0% |
| !! | TGATTGTAGACTAAAATATA+TGG | + | 14541:2004-2023 | MS.gene35529:CDS | 20.0% |
| !! | TGCTAATAACATCAAAAATA+AGG | - | 14541:4116-4135 | MS.gene35529:intergenic | 20.0% |
| !! | TTCAAATCTTCAACTATAAT+AGG | - | 14541:3715-3734 | MS.gene35529:intergenic | 20.0% |
| !! | TTTAAAAACAAACTTCTGAA+AGG | + | 14541:2554-2573 | MS.gene35529:CDS | 20.0% |
| !!! | GTAGAAATTTGTAATTTTCA+GGG | + | 14541:1849-1868 | MS.gene35529:CDS | 20.0% |
| !!! | TTTTATTATGTAAGTTTGGT+TGG | + | 14541:1275-1294 | MS.gene35529:intron | 20.0% |
| ! | AAAATTAACATGCAAAAGAG+GGG | - | 14541:4224-4243 | MS.gene35529:intergenic | 25.0% |
| ! | AAACTTGTCTAGTTATGTTA+TGG | + | 14541:3463-3482 | MS.gene35529:intron | 25.0% |
| ! | AATGAGATAAGATATAAGAG+AGG | - | 14541:3227-3246 | MS.gene35529:intergenic | 25.0% |
| ! | AATTCAGATCTTGCATTATA+AGG | - | 14541:1939-1958 | MS.gene35529:intergenic | 25.0% |
| ! | AGCAAAATTTATCTGTAGTT+GGG | + | 14541:2030-2049 | MS.gene35529:CDS | 25.0% |
| ! | ATGTAGATTATTAGTAAGGA+AGG | + | 14541:3613-3632 | MS.gene35529:intron | 25.0% |
| ! | ATTACAAATTTCTACGCTTA+AGG | - | 14541:1844-1863 | MS.gene35529:intergenic | 25.0% |
| ! | CAAAATTAACATGCAAAAGA+GGG | - | 14541:4225-4244 | MS.gene35529:intergenic | 25.0% |
| ! | CAGATTTGAATCAAAATTTG+AGG | - | 14541:1901-1920 | MS.gene35529:intergenic | 25.0% |
| ! | TCAAAATTAACATGCAAAAG+AGG | - | 14541:4226-4245 | MS.gene35529:intergenic | 25.0% |
| ! | TTACAAATTTCTACGCTTAA+GGG | - | 14541:1843-1862 | MS.gene35529:intergenic | 25.0% |
| ! | TTTCAGTTGAGAAATGTTTA+AGG | - | 14541:2096-2115 | MS.gene35529:intergenic | 25.0% |
| !! | ATCTAGGATTATTCATGATT+CGG | - | 14541:1416-1435 | MS.gene35529:intergenic | 25.0% |
| !! | ATGTCATCTAAAATACTTTC+TGG | + | 14541:4245-4264 | MS.gene35529:intron | 25.0% |
| !! | ATTACCTGATCACAATATTT+TGG | + | 14541:1454-1473 | MS.gene35529:intron | 25.0% |
| !! | ATTGTTGTTATAACGTAGAA+TGG | + | 14541:940-959 | MS.gene35529:intron | 25.0% |
| !! | CGTAGAAATTTGTAATTTTC+AGG | + | 14541:1848-1867 | MS.gene35529:CDS | 25.0% |
| !! | GAAATGTCTAGAACAAAAAA+TGG | - | 14541:1125-1144 | MS.gene35529:intergenic | 25.0% |
| !!! | AATACTAGTTTGCTGTTTTT+AGG | + | 14541:1037-1056 | MS.gene35529:intron | 25.0% |
| !!! | AGTTCGTGGTTTTTTTTTTA+CGG | + | 14541:4011-4030 | MS.gene35529:intron | 25.0% |
| !!! | ATACAGATAATGGAGAATAT+GGG | + | 14541:1576-1595 | MS.gene35529:intron | 25.0% |
| !!! | TTGCTTTTACTCAGTATAAT+TGG | + | 14541:831-850 | MS.gene35529:CDS | 25.0% |
| AAACCATTAATAGTTCGGTT+CGG | + | 14541:1376-1395 | MS.gene35529:intron | 30.0% | |
| AAATTAGCTGCAGATACTTT+CGG | - | 14541:2245-2264 | MS.gene35529:intergenic | 30.0% | |
| AAGTCGTTCATTTGAAAGTT+TGG | - | 14541:1679-1698 | MS.gene35529:intergenic | 30.0% | |
| AATCTCACAATGACAAAATC+TGG | + | 14541:3932-3951 | MS.gene35529:CDS | 30.0% | |
| AGATTATTAGTAAGGAAGGT+GGG | + | 14541:3617-3636 | MS.gene35529:intron | 30.0% | |
| ATCTCACAATGACAAAATCT+GGG | + | 14541:3933-3952 | MS.gene35529:CDS | 30.0% | |
| ATCTCTATAATCTGTTTGCT+TGG | + | 14541:3812-3831 | MS.gene35529:intron | 30.0% | |
| ATCTGTTGAAGCAAACTTAA+AGG | - | 14541:2312-2331 | MS.gene35529:intergenic | 30.0% | |
| ATGTAAGTTTGGTTGGAAAA+GGG | + | 14541:1282-1301 | MS.gene35529:intron | 30.0% | |
| CAGCAAAATTTATCTGTAGT+TGG | + | 14541:2029-2048 | MS.gene35529:CDS | 30.0% | |
| CATGAAAATAGTGTTTCAAC+TGG | + | 14541:3049-3068 | MS.gene35529:CDS | 30.0% | |
| CTCAGTTAATGAATCAATGT+TGG | + | 14541:2682-2701 | MS.gene35529:CDS | 30.0% | |
| TAACAAAGAAAAGGACTTAC+AGG | - | 14541:1245-1264 | MS.gene35529:intergenic | 30.0% | |
| TAATAGGACAAACCATTGAT+TGG | - | 14541:3699-3718 | MS.gene35529:intergenic | 30.0% | |
| TAGATTATTAGTAAGGAAGG+TGG | + | 14541:3616-3635 | MS.gene35529:intron | 30.0% | |
| TATGTAAGTTTGGTTGGAAA+AGG | + | 14541:1281-1300 | MS.gene35529:intron | 30.0% | |
| TCTTATAGTGAAGACAACAT+CGG | - | 14541:4197-4216 | MS.gene35529:intergenic | 30.0% | |
| TGAGAAATGTTTAAGGAACT+TGG | - | 14541:2089-2108 | MS.gene35529:intergenic | 30.0% | |
| TGCAGGAAATAAGGTTAAAA+AGG | + | 14541:2616-2635 | MS.gene35529:CDS | 30.0% | |
| TGTTTAGTTGAGAGGAATAA+CGG | - | 14541:1544-1563 | MS.gene35529:intergenic | 30.0% | |
| TTACGAGAAATTGTTCCAAA+TGG | + | 14541:3187-3206 | MS.gene35529:CDS | 30.0% | |
| TTAGATTTGCAAACTTCATC+CGG | - | 14541:3088-3107 | MS.gene35529:intergenic | 30.0% | |
| TTTGCAAATCTAATCGCAAA+AGG | + | 14541:3095-3114 | MS.gene35529:CDS | 30.0% | |
| ! | AACTTACAAAAACTTTTCGC+TGG | - | 14541:4150-4169 | MS.gene35529:intergenic | 30.0% |
| ! | AATAGGACAAACCATTGATT+GGG | - | 14541:3698-3717 | MS.gene35529:intergenic | 30.0% |
| ! | CAAGAAAAGCATATGCTTAA+TGG | - | 14541:3355-3374 | MS.gene35529:intergenic | 30.0% |
| ! | GAAATAGCTGACTTAATAAG+AGG | + | 14541:3877-3896 | MS.gene35529:CDS | 30.0% |
| ! | GACAATTCAGTTTTCTGTAA+AGG | + | 14541:1304-1323 | MS.gene35529:intron | 30.0% |
| ! | GATGACCTGTTTGATATTTT+AGG | + | 14541:2524-2543 | MS.gene35529:CDS | 30.0% |
| ! | TGGAATGAATAGTCTTTTGA+GGG | + | 14541:2193-2212 | MS.gene35529:CDS | 30.0% |
| ! | TTATGTCCGGTAATTTTGAA+GGG | + | 14541:2864-2883 | MS.gene35529:CDS | 30.0% |
| !! | AAAATTGCTGTTTAGTTGAG+AGG | - | 14541:1552-1571 | MS.gene35529:intergenic | 30.0% |
| !! | ATTTTGTTTCAAAGTCGGTT+TGG | - | 14541:2768-2787 | MS.gene35529:intergenic | 30.0% |
| !! | GAAATTACTTTTGCTCCATT+TGG | - | 14541:3205-3224 | MS.gene35529:intergenic | 30.0% |
| !! | GATACAGATAATGGAGAATA+TGG | + | 14541:1575-1594 | MS.gene35529:intron | 30.0% |
| !! | TACTTTCTGGTTTAATTTCC+AGG | + | 14541:4258-4277 | MS.gene35529:intron | 30.0% |
| !! | TCGGAATTTTGTTTCAAAGT+CGG | - | 14541:2773-2792 | MS.gene35529:intergenic | 30.0% |
| !!! | GACAAGTTTTTTGAGATATG+AGG | - | 14541:3452-3471 | MS.gene35529:intergenic | 30.0% |
| !!! | TTGTTTGGTTTTTCGAAGAA+TGG | + | 14541:2890-2909 | MS.gene35529:CDS | 30.0% |
| AAAAGGAAACATGTCAGAAC+AGG | + | 14541:2633-2652 | MS.gene35529:CDS | 35.0% | |
| AAACCGAACCGAACTATTAA+TGG | - | 14541:1382-1401 | MS.gene35529:intergenic | 35.0% | |
| AAAGGAAACATGTCAGAACA+GGG | + | 14541:2634-2653 | MS.gene35529:CDS | 35.0% | |
| AAATTTCTACGCTTAAGGGA+TGG | - | 14541:1839-1858 | MS.gene35529:intergenic | 35.0% | |
| AACTTGGAACATTGACACAA+GGG | - | 14541:2073-2092 | MS.gene35529:intergenic | 35.0% | |
| AAGTTTGGCAGAATAGTCTT+CGG | - | 14541:1664-1683 | MS.gene35529:intergenic | 35.0% | |
| AATGAATCAATGTTGGACAG+TGG | + | 14541:2689-2708 | MS.gene35529:CDS | 35.0% | |
| AGCAGTACTTCATTACTTAG+TGG | + | 14541:2155-2174 | MS.gene35529:CDS | 35.0% | |
| ATCTTGCAGAACAACATTGA+CGG | + | 14541:2799-2818 | MS.gene35529:CDS | 35.0% | |
| ATTAGGCTTAACCATCTTGA+AGG | + | 14541:3900-3919 | MS.gene35529:CDS | 35.0% | |
| CCACACCTAAAATATCAAAC+AGG | - | 14541:2532-2551 | MS.gene35529:intergenic | 35.0% | |
| CTTATAGTGAAGACAACATC+GGG | - | 14541:4196-4215 | MS.gene35529:intergenic | 35.0% | |
| CTTTCAAATGAACGACTTGA+TGG | + | 14541:1681-1700 | MS.gene35529:CDS | 35.0% | |
| GATAAACTATGACATGCTTC+AGG | + | 14541:2337-2356 | MS.gene35529:CDS | 35.0% | |
| GGAGCAAACCATTAATAGTT+CGG | + | 14541:1371-1390 | MS.gene35529:intron | 35.0% | |
| GTATCTGCAGCTAATTTATC+CGG | + | 14541:2248-2267 | MS.gene35529:CDS | 35.0% | |
| TAAAAATGCATATCCACCTG+AGG | + | 14541:905-924 | MS.gene35529:CDS | 35.0% | |
| TACTGCTAGAACTCAGATTA+TGG | - | 14541:2142-2161 | MS.gene35529:intergenic | 35.0% | |
| TAGATTTGCAAACTTCATCC+GGG | - | 14541:3087-3106 | MS.gene35529:intergenic | 35.0% | |
| TAGTCTACAATCACTTTGAC+CGG | - | 14541:1997-2016 | MS.gene35529:intergenic | 35.0% | |
| TCAGATTATGGCCAAAGTTA+AGG | - | 14541:2130-2149 | MS.gene35529:intergenic | 35.0% | |
| TCGAAGAATGGAGGTAAAAT+GGG | + | 14541:2902-2921 | MS.gene35529:CDS | 35.0% | |
| TCTCAAACTACAACTGTATG+TGG | + | 14541:2983-3002 | MS.gene35529:CDS | 35.0% | |
| TCTGAATTCAACAACTTTGC+CGG | + | 14541:1951-1970 | MS.gene35529:CDS | 35.0% | |
| TGAATCATTTGGCGATCTTT+AGG | - | 14541:3151-3170 | MS.gene35529:intergenic | 35.0% | |
| TGACACGATCTTGAATCATT+TGG | - | 14541:3162-3181 | MS.gene35529:intergenic | 35.0% | |
| TGCACATACACACACAAATT+TGG | + | 14541:3515-3534 | MS.gene35529:intron | 35.0% | |
| TGTTCTGCAAGATATGTCAT+CGG | - | 14541:2792-2811 | MS.gene35529:intergenic | 35.0% | |
| TTAGGCTTAACCATCTTGAA+GGG | + | 14541:3901-3920 | MS.gene35529:CDS | 35.0% | |
| TTATAGTGAAGACAACATCG+GGG | - | 14541:4195-4214 | MS.gene35529:intergenic | 35.0% | |
| TTCATTACTTAGTGGAATCC+CGG | + | 14541:2163-2182 | MS.gene35529:CDS | 35.0% | |
| TTCGAAGAATGGAGGTAAAA+TGG | + | 14541:2901-2920 | MS.gene35529:CDS | 35.0% | |
| ! | AAACACATAACTGGTCTGTT+CGG | + | 14541:1346-1365 | MS.gene35529:intron | 35.0% |
| ! | CTGTAGAAACTAGTTCTCTA+AGG | + | 14541:2927-2946 | MS.gene35529:CDS | 35.0% |
| ! | CTTCAAGATTAGTCAGTACA+TGG | - | 14541:3993-4012 | MS.gene35529:intergenic | 35.0% |
| ! | GCTGACTTAATAAGAGGATT+AGG | + | 14541:3883-3902 | MS.gene35529:CDS | 35.0% |
| ! | GTGGAATGAATAGTCTTTTG+AGG | + | 14541:2192-2211 | MS.gene35529:CDS | 35.0% |
| ! | GTTATGTCCGGTAATTTTGA+AGG | + | 14541:2863-2882 | MS.gene35529:CDS | 35.0% |
| ! | GTTTAATTTCCAGGCAAACA+GGG | + | 14541:4267-4286 | MS.gene35529:intron | 35.0% |
| ! | GTTTTCTGTAAAGGTAGTTC+TGG | + | 14541:1313-1332 | MS.gene35529:intron | 35.0% |
| ! | TAGTCAGTACATGGCTTTTA+TGG | - | 14541:3984-4003 | MS.gene35529:intergenic | 35.0% |
| !! | AATTTTGAAGGGGGATTGTT+TGG | + | 14541:2875-2894 | MS.gene35529:CDS | 35.0% |
| !! | ACAGAGACACAAATTTGTTG+AGG | + | 14541:3547-3566 | MS.gene35529:intron | 35.0% |
| !! | ATTCATGATTCGGTTCAGAA+AGG | - | 14541:1406-1425 | MS.gene35529:intergenic | 35.0% |
| !! | CATCTTTTTGAAAGCAATCG+CGG | - | 14541:2430-2449 | MS.gene35529:intergenic | 35.0% |
| !! | CCTGTTTGATATTTTAGGTG+TGG | + | 14541:2529-2548 | MS.gene35529:CDS | 35.0% |
| !! | TAATTTTCAGGGTAGAGTTG+TGG | + | 14541:1860-1879 | MS.gene35529:CDS | 35.0% |
| !! | TATGTCCGGTAATTTTGAAG+GGG | + | 14541:2865-2884 | MS.gene35529:CDS | 35.0% |
| !!! | CCTGATCACAATATTTTGGT+CGG | + | 14541:1458-1477 | MS.gene35529:intron | 35.0% |
| !!! | GTTTTGAAAGACAACTTCGA+GGG | + | 14541:3643-3662 | MS.gene35529:CDS | 35.0% |
| !!! | TTTGGTTTTTCGAAGAATGG+AGG | + | 14541:2893-2912 | MS.gene35529:CDS | 35.0% |
| AACAGACCACCTATTAGATG+CGG | + | 14541:2730-2749 | MS.gene35529:CDS | 40.0% | |
| AATCGCAAAAGGCTTAAACC+AGG | + | 14541:3106-3125 | MS.gene35529:CDS | 40.0% | |
| AATTTATCCGGAGCACAAGT+TGG | + | 14541:2260-2279 | MS.gene35529:CDS | 40.0% | |
| ACAGACAGAAGCCTTAACTT+TGG | + | 14541:2116-2135 | MS.gene35529:CDS | 40.0% | |
| ACAGATGAATCAACAGACGA+AGG | - | 14541:1726-1745 | MS.gene35529:intergenic | 40.0% | |
| ACTATTCGGCAAATACTCCT+CGG | - | 14541:2387-2406 | MS.gene35529:intergenic | 40.0% | |
| ACTCAGTATAATTGGACGCT+CGG | + | 14541:839-858 | MS.gene35529:CDS | 40.0% | |
| AGATGGCAATGCAGGAAATA+AGG | + | 14541:2607-2626 | MS.gene35529:CDS | 40.0% | |
| ATACTCCTCGGGATTAAAAG+AGG | - | 14541:2375-2394 | MS.gene35529:intergenic | 40.0% | |
| ATTCTTACAGATGCTTTGCG+AGG | + | 14541:3837-3856 | MS.gene35529:intron | 40.0% | |
| ATTTATCCGGAGCACAAGTT+GGG | + | 14541:2261-2280 | MS.gene35529:CDS | 40.0% | |
| CAATAATAGCTTCGTACCTC+AGG | - | 14541:924-943 | MS.gene35529:intergenic | 40.0% | |
| CAATCCCCCTTCAAAATTAC+CGG | - | 14541:2873-2892 | MS.gene35529:intergenic | 40.0% | |
| CAGCATGAGATGAATAACTC+TGG | - | 14541:1794-1813 | MS.gene35529:intergenic | 40.0% | |
| CATTTACCAACAGTCATGAG+TGG | + | 14541:862-881 | MS.gene35529:CDS | 40.0% | |
| CCAATTTGAACAACTCCATG+AGG | - | 14541:1212-1231 | MS.gene35529:intergenic | 40.0% | |
| CCGACCAAAATATTGTGATC+AGG | - | 14541:1461-1480 | MS.gene35529:intergenic | 40.0% | |
| CCTCATGGAGTTGTTCAAAT+TGG | + | 14541:1209-1228 | MS.gene35529:CDS | 40.0% | |
| CGCGATTGCTTTCAAAAAGA+TGG | + | 14541:2428-2447 | MS.gene35529:CDS | 40.0% | |
| CGCTGTCATCATAGATTGAA+TGG | - | 14541:2456-2475 | MS.gene35529:intergenic | 40.0% | |
| CTATTCATTCCACCATGTAC+CGG | - | 14541:2185-2204 | MS.gene35529:intergenic | 40.0% | |
| CTGACTAATCTTGAAGTTCG+TGG | + | 14541:3997-4016 | MS.gene35529:intron | 40.0% | |
| GAACTTGGAACATTGACACA+AGG | - | 14541:2074-2093 | MS.gene35529:intergenic | 40.0% | |
| GATGCTAATCGAGGTAATGA+TGG | + | 14541:3747-3766 | MS.gene35529:intron | 40.0% | |
| GCACAAGCTTCTTCATGTTT+AGG | - | 14541:2482-2501 | MS.gene35529:intergenic | 40.0% | |
| GTATGTAAGCAGGTTATGTC+CGG | + | 14541:2851-2870 | MS.gene35529:CDS | 40.0% | |
| TACTCCTCGGGATTAAAAGA+GGG | - | 14541:2374-2393 | MS.gene35529:intergenic | 40.0% | |
| TAGGCTTAACCATCTTGAAG+GGG | + | 14541:3902-3921 | MS.gene35529:CDS | 40.0% | |
| TATTCATTCCACCATGTACC+GGG | - | 14541:2184-2203 | MS.gene35529:intergenic | 40.0% | |
| TCTTGCAGAACAACATTGAC+GGG | + | 14541:2800-2819 | MS.gene35529:CDS | 40.0% | |
| TGTGATCAGGTAATAACGCA+AGG | - | 14541:1448-1467 | MS.gene35529:intergenic | 40.0% | |
| ! | ATGCATGACCAATTTTCAGC+TGG | + | 14541:1071-1090 | MS.gene35529:CDS | 40.0% |
| ! | CTGTTTGCTGATGAATCAGA+TGG | + | 14541:2590-2609 | MS.gene35529:CDS | 40.0% |
| ! | CTTGATGGATCTTCTACTTC+TGG | + | 14541:1696-1715 | MS.gene35529:CDS | 40.0% |
| ! | GGATGGAGTGTTTGAACATT+AGG | - | 14541:1822-1841 | MS.gene35529:intergenic | 40.0% |
| ! | GGTTTAATTTCCAGGCAAAC+AGG | + | 14541:4266-4285 | MS.gene35529:intron | 40.0% |
| ! | TTAGAGCCATTGACTACTGA+AGG | - | 14541:1768-1787 | MS.gene35529:intergenic | 40.0% |
| !! | ATGTCCGGTAATTTTGAAGG+GGG | + | 14541:2866-2885 | MS.gene35529:CDS | 40.0% |
| !! | CTGTAAAGGTAGTTCTGGTT+CGG | + | 14541:1318-1337 | MS.gene35529:intron | 40.0% |
| !! | GAAACTAGTTCTCTAAGGTC+TGG | + | 14541:2932-2951 | MS.gene35529:CDS | 40.0% |
| !! | TCGGTTTGGAAACACATAAC+TGG | + | 14541:1337-1356 | MS.gene35529:intron | 40.0% |
| !! | TCTTCGGATAGAAGAGCATT+GGG | - | 14541:1648-1667 | MS.gene35529:intergenic | 40.0% |
| !!! | GGTTTTGAAAGACAACTTCG+AGG | + | 14541:3642-3661 | MS.gene35529:CDS | 40.0% |
| !!! | TGGACAGTGGCATTTTTTCT+GGG | + | 14541:2702-2721 | MS.gene35529:CDS | 40.0% |
| !!! | TTGGACAGTGGCATTTTTTC+TGG | + | 14541:2701-2720 | MS.gene35529:CDS | 40.0% |
| AACCATCTTGAAGGGGGTAA+TGG | + | 14541:3909-3928 | MS.gene35529:CDS | 45.0% | |
| AACCTGCTTACATACACGAG+AGG | - | 14541:2846-2865 | MS.gene35529:intergenic | 45.0% | |
| AACTGGATACTCTAAACGCC+CGG | + | 14541:3066-3085 | MS.gene35529:CDS | 45.0% | |
| ACATACACGAGAGGGAATAG+AGG | - | 14541:2837-2856 | MS.gene35529:intergenic | 45.0% | |
| ACCTGCTTACATACACGAGA+GGG | - | 14541:2845-2864 | MS.gene35529:intergenic | 45.0% | |
| ACTCCTCGGGATTAAAAGAG+GGG | - | 14541:2373-2392 | MS.gene35529:intergenic | 45.0% | |
| AGGCTTAACCATCTTGAAGG+GGG | + | 14541:3903-3922 | MS.gene35529:CDS | 45.0% | |
| ATTAGATGCGGTGGTCTCAA+CGG | + | 14541:2742-2761 | MS.gene35529:CDS | 45.0% | |
| ATTTGGCGATCTTTAGGTCG+AGG | - | 14541:3145-3164 | MS.gene35529:intergenic | 45.0% | |
| CAGCAAACAGTTCATTCCAG+TGG | - | 14541:2580-2599 | MS.gene35529:intergenic | 45.0% | |
| CCGACAAGCTGAAACAAAAC+GGG | + | 14541:3394-3413 | MS.gene35529:CDS | 45.0% | |
| CCTGCATTCCAGCTGAAAAT+TGG | - | 14541:1082-1101 | MS.gene35529:intergenic | 45.0% | |
| CCTGGGATATGACCACTATT+CGG | - | 14541:2401-2420 | MS.gene35529:intergenic | 45.0% | |
| CGACAAGCTGAAACAAAACG+GGG | + | 14541:3395-3414 | MS.gene35529:CDS | 45.0% | |
| CGCAAGGATATCACTGATCT+AGG | - | 14541:1432-1451 | MS.gene35529:intergenic | 45.0% | |
| CTATTCGGCAAATACTCCTC+GGG | - | 14541:2386-2405 | MS.gene35529:intergenic | 45.0% | |
| CTCTCAACTTAGTTCGTGGT+TGG | + | 14541:3006-3025 | MS.gene35529:CDS | 45.0% | |
| CTTAGTTCGTGGTTGGAGAA+TGG | + | 14541:3013-3032 | MS.gene35529:CDS | 45.0% | |
| CTTGCAGAACAACATTGACG+GGG | + | 14541:2801-2820 | MS.gene35529:CDS | 45.0% | |
| CTTTGACCGGATTGACCAAA+CGG | - | 14541:1984-2003 | MS.gene35529:intergenic | 45.0% | |
| GAAACAAAACGGGGAGTCTA+AGG | + | 14541:3404-3423 | MS.gene35529:CDS | 45.0% | |
| GAGAATCCACTCATGACTGT+TGG | - | 14541:871-890 | MS.gene35529:intergenic | 45.0% | |
| GATGAATCAGATGGCAATGC+AGG | + | 14541:2599-2618 | MS.gene35529:CDS | 45.0% | |
| GCCGACAAGCTGAAACAAAA+CGG | + | 14541:3393-3412 | MS.gene35529:CDS | 45.0% | |
| GTTATTCCTGTGCTTCCTCA+TGG | + | 14541:1194-1213 | MS.gene35529:CDS | 45.0% | |
| TAATAGCTTCGTACCTCAGG+TGG | - | 14541:921-940 | MS.gene35529:intergenic | 45.0% | |
| TACAGATGCTTTGCGAGGAA+CGG | + | 14541:3842-3861 | MS.gene35529:intron | 45.0% | |
| TATGTCACTCGTTCGTCTTC+TGG | + | 14541:4312-4331 | MS.gene35529:CDS | 45.0% | |
| TATTAGTAAGGAAGGTGGGC+TGG | + | 14541:3621-3640 | MS.gene35529:CDS | 45.0% | |
| TCTGGTTGTAGCAAGGATGA+TGG | + | 14541:2950-2969 | MS.gene35529:CDS | 45.0% | |
| TGAAAGACAACTTCGAGGGA+GGG | + | 14541:3647-3666 | MS.gene35529:CDS | 45.0% | |
| TTAAACCAGGAGAGAATCCC+AGG | + | 14541:3119-3138 | MS.gene35529:CDS | 45.0% | |
| TTCATTCCCAACTTGTGCTC+CGG | - | 14541:2270-2289 | MS.gene35529:intergenic | 45.0% | |
| TTCCATTACCCCCTTCAAGA+TGG | - | 14541:3914-3933 | MS.gene35529:intergenic | 45.0% | |
| TTGAAAGACAACTTCGAGGG+AGG | + | 14541:3646-3665 | MS.gene35529:CDS | 45.0% | |
| TTGAGACCACCGCATCTAAT+AGG | - | 14541:2742-2761 | MS.gene35529:intergenic | 45.0% | |
| ! | AAAACGGGGAGTCTAAGGTA+TGG | + | 14541:3409-3428 | MS.gene35529:intron | 45.0% |
| ! | ACAAACTTCTGAAAGGCCAC+TGG | + | 14541:2561-2580 | MS.gene35529:CDS | 45.0% |
| ! | ACATAACTGGTCTGTTCGGT+TGG | + | 14541:1350-1369 | MS.gene35529:intron | 45.0% |
| ! | CAGTCATGAGTGGATTCTCT+TGG | + | 14541:872-891 | MS.gene35529:CDS | 45.0% |
| ! | CCAATTTTCAGCTGGAATGC+AGG | + | 14541:1079-1098 | MS.gene35529:CDS | 45.0% |
| ! | GTCTTCGGATAGAAGAGCAT+TGG | - | 14541:1649-1668 | MS.gene35529:intergenic | 45.0% |
| ! | TCTAAGGTCTGGTTGTAGCA+AGG | + | 14541:2943-2962 | MS.gene35529:CDS | 45.0% |
| !! | AAGGTAGTTCTGGTTCGGTT+TGG | + | 14541:1323-1342 | MS.gene35529:intron | 45.0% |
| !! | GAGGAGTATTTGCCGAATAG+TGG | + | 14541:2386-2405 | MS.gene35529:CDS | 45.0% |
| !! | TCTTCTGGAGCAAACGATGA+AGG | + | 14541:4327-4346 | MS.gene35529:CDS | 45.0% |
| !! | TTTTCAGGGTAGAGTTGTGG+AGG | + | 14541:1863-1882 | MS.gene35529:CDS | 45.0% |
| !!! | CCCGTTTTGTTTCAGCTTGT+CGG | - | 14541:3397-3416 | MS.gene35529:intergenic | 45.0% |
| !!! | ATTTTTTTTTTTTAAAAATC+TGG | - | 14541:3250-3269 | MS.gene35529:intergenic | 5.0% |
| AAACAGGGACGTAACGAGGA+TGG | + | 14541:4282-4301 | MS.gene35529:CDS | 50.0% | |
| AACAGGTCATCACCACCTGA+TGG | - | 14541:2515-2534 | MS.gene35529:intergenic | 50.0% | |
| AAGAGCCTGATCTTGCAGCT+CGG | + | 14541:1615-1634 | MS.gene35529:CDS | 50.0% | |
| AAGCAATCGCGGACAAAACC+TGG | - | 14541:2419-2438 | MS.gene35529:intergenic | 50.0% | |
| ACAGATGCTTTGCGAGGAAC+GGG | + | 14541:3843-3862 | MS.gene35529:intron | 50.0% | |
| ACCTCGATTAGCATCTGACG+AGG | - | 14541:3742-3761 | MS.gene35529:intergenic | 50.0% | |
| AGACCACCGCATCTAATAGG+TGG | - | 14541:2739-2758 | MS.gene35529:intergenic | 50.0% | |
| AGACCACCTATTAGATGCGG+TGG | + | 14541:2733-2752 | MS.gene35529:CDS | 50.0% | |
| AGCAATCGCGGACAAAACCT+GGG | - | 14541:2418-2437 | MS.gene35529:intergenic | 50.0% | |
| CCGAATAGTGGTCATATCCC+AGG | + | 14541:2398-2417 | MS.gene35529:CDS | 50.0% | |
| CTGGGCACGTTTCATTGTTG+AGG | + | 14541:3951-3970 | MS.gene35529:CDS | 50.0% | |
| CTTAGTGGAATCCCGGTACA+TGG | + | 14541:2170-2189 | MS.gene35529:CDS | 50.0% | |
| GAAAGACAACTTCGAGGGAG+GGG | + | 14541:3648-3667 | MS.gene35529:CDS | 50.0% | |
| GCATAGATGCACTGCTGGAA+CGG | + | 14541:3328-3347 | MS.gene35529:CDS | 50.0% | |
| GCTACATGGGCATATGAGGT+TGG | + | 14541:3670-3689 | MS.gene35529:CDS | 50.0% | |
| GGAAACATGTCAGAACAGGG+AGG | + | 14541:2637-2656 | MS.gene35529:CDS | 50.0% | |
| GTGGCTCTCAACTTAGTTCG+TGG | + | 14541:3002-3021 | MS.gene35529:CDS | 50.0% | |
| GTGTAGCATAGATGCACTGC+TGG | + | 14541:3323-3342 | MS.gene35529:intron | 50.0% | |
| TACACGAGAGGGAATAGAGG+CGG | - | 14541:2834-2853 | MS.gene35529:intergenic | 50.0% | |
| TACTGAAGGAGCGGAATTCG+AGG | - | 14541:1754-1773 | MS.gene35529:intergenic | 50.0% | |
| TCCCTCTCGTGTATGTAAGC+AGG | + | 14541:2841-2860 | MS.gene35529:CDS | 50.0% | |
| TCCGCTCCTTCAGTAGTCAA+TGG | + | 14541:1759-1778 | MS.gene35529:CDS | 50.0% | |
| TCCTCGTCAGATGCTAATCG+AGG | + | 14541:3738-3757 | MS.gene35529:CDS | 50.0% | |
| TGTGCTCAACAACCTCCATC+AGG | + | 14541:2497-2516 | MS.gene35529:CDS | 50.0% | |
| ! | ACAACTCCATGAGGAAGCAC+AGG | - | 14541:1203-1222 | MS.gene35529:intergenic | 50.0% |
| ! | CATCCCCTCTTTTAATCCCG+AGG | + | 14541:2367-2386 | MS.gene35529:CDS | 50.0% |
| ! | GCCATTGACTACTGAAGGAG+CGG | - | 14541:1763-1782 | MS.gene35529:intergenic | 50.0% |
| ! | GGTTGTAGCAAGGATGATGG+TGG | + | 14541:2953-2972 | MS.gene35529:CDS | 50.0% |
| ! | TGAGGTTGGCTCCCAATCAA+TGG | + | 14541:3684-3703 | MS.gene35529:CDS | 50.0% |
| AGAGCCTGATCTTGCAGCTC+GGG | + | 14541:1616-1635 | MS.gene35529:CDS | 55.0% | |
| AGGCAAACAGGGACGTAACG+AGG | + | 14541:4278-4297 | MS.gene35529:intron | 55.0% | |
| AGGGGCTACATGGGCATATG+AGG | + | 14541:3666-3685 | MS.gene35529:CDS | 55.0% | |
| AGGTCATCACCACCTGATGG+AGG | - | 14541:2512-2531 | MS.gene35529:intergenic | 55.0% | |
| AGTGGAATCCCGGTACATGG+TGG | + | 14541:2173-2192 | MS.gene35529:CDS | 55.0% | |
| CAGATGCTTTGCGAGGAACG+GGG | + | 14541:3844-3863 | MS.gene35529:intron | 55.0% | |
| CGAGGAACGGGGTTTCTTTC+TGG | + | 14541:3855-3874 | MS.gene35529:CDS | 55.0% | |
| CGATCTTTAGGTCGAGGCCT+GGG | - | 14541:3139-3158 | MS.gene35529:intergenic | 55.0% | |
| GCTCAACAACCTCCATCAGG+TGG | + | 14541:2500-2519 | MS.gene35529:CDS | 55.0% | |
| TACACCCGAGCTGCAAGATC+AGG | - | 14541:1623-1642 | MS.gene35529:intergenic | 55.0% | |
| TCGTTACGTCCCTGTTTGCC+TGG | - | 14541:4279-4298 | MS.gene35529:intergenic | 55.0% | |
| TCTGCGCCGTTTGGTCAATC+CGG | + | 14541:1975-1994 | MS.gene35529:CDS | 55.0% | |
| TTGACCAAACGGCGCAGAAC+CGG | - | 14541:1973-1992 | MS.gene35529:intergenic | 55.0% | |
| ACTTCGAGGGAGGGGCTACA+TGG | + | 14541:3656-3675 | MS.gene35529:CDS | 60.0% | |
| CTTCGAGGGAGGGGCTACAT+GGG | + | 14541:3657-3676 | MS.gene35529:CDS | 60.0% | |
| GCGATCTTTAGGTCGAGGCC+TGG | - | 14541:3140-3159 | MS.gene35529:intergenic | 60.0% | |
| !! | TTTGCCGGTTCTGCGCCGTT+TGG | + | 14541:1966-1985 | MS.gene35529:CDS | 60.0% |
| CGAGGCCTGGGATTCTCTCC+TGG | - | 14541:3127-3146 | MS.gene35529:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 14541 | gene | 810 | 4349 | 810 | ID=MS.gene35529 |
| 14541 | mRNA | 810 | 4349 | 810 | ID=MS.gene35529.t1;Parent=MS.gene35529 |
| 14541 | exon | 810 | 926 | 810 | ID=MS.gene35529.t1.exon1;Parent=MS.gene35529.t1 |
| 14541 | CDS | 810 | 926 | 810 | ID=cds.MS.gene35529.t1;Parent=MS.gene35529.t1 |
| 14541 | exon | 1059 | 1100 | 1059 | ID=MS.gene35529.t1.exon2;Parent=MS.gene35529.t1 |
| 14541 | CDS | 1059 | 1100 | 1059 | ID=cds.MS.gene35529.t1;Parent=MS.gene35529.t1 |
| 14541 | exon | 1185 | 1244 | 1185 | ID=MS.gene35529.t1.exon3;Parent=MS.gene35529.t1 |
| 14541 | CDS | 1185 | 1244 | 1185 | ID=cds.MS.gene35529.t1;Parent=MS.gene35529.t1 |
| 14541 | exon | 1582 | 3216 | 1582 | ID=MS.gene35529.t1.exon4;Parent=MS.gene35529.t1 |
| 14541 | CDS | 1582 | 3216 | 1582 | ID=cds.MS.gene35529.t1;Parent=MS.gene35529.t1 |
| 14541 | exon | 3324 | 3425 | 3324 | ID=MS.gene35529.t1.exon5;Parent=MS.gene35529.t1 |
| 14541 | CDS | 3324 | 3425 | 3324 | ID=cds.MS.gene35529.t1;Parent=MS.gene35529.t1 |
| 14541 | exon | 3619 | 3759 | 3619 | ID=MS.gene35529.t1.exon6;Parent=MS.gene35529.t1 |
| 14541 | CDS | 3619 | 3759 | 3619 | ID=cds.MS.gene35529.t1;Parent=MS.gene35529.t1 |
| 14541 | exon | 3847 | 3972 | 3847 | ID=MS.gene35529.t1.exon7;Parent=MS.gene35529.t1 |
| 14541 | CDS | 3847 | 3972 | 3847 | ID=cds.MS.gene35529.t1;Parent=MS.gene35529.t1 |
| 14541 | exon | 4280 | 4349 | 4280 | ID=MS.gene35529.t1.exon8;Parent=MS.gene35529.t1 |
| 14541 | CDS | 4280 | 4349 | 4280 | ID=cds.MS.gene35529.t1;Parent=MS.gene35529.t1 |
| Gene Sequence |
| Protein sequence |
