Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35800.t1 | XP_003597016.2 | 99.2 | 247 | 2 | 0 | 1 | 247 | 7 | 253 | 6.20E-125 | 456.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35800.t1 | Q8VZU2 | 64.9 | 242 | 82 | 1 | 6 | 247 | 10 | 248 | 6.4e-78 | 292.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35800.t1 | A0A072VC55 | 99.2 | 247 | 2 | 0 | 1 | 247 | 7 | 253 | 4.5e-125 | 456.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene35800 | 0.811364 | 7.26E-51 | -1.69E-46 |
| MS.gene049807 | MS.gene35800 | 0.806589 | 7.64E-50 | -1.69E-46 |
| MS.gene050224 | MS.gene35800 | 0.800354 | 1.50E-48 | -1.69E-46 |
| MS.gene050359 | MS.gene35800 | 0.823955 | 1.05E-53 | -1.69E-46 |
| MS.gene050931 | MS.gene35800 | 0.805223 | 1.48E-49 | -1.69E-46 |
| MS.gene051234 | MS.gene35800 | 0.803106 | 4.08E-49 | -1.69E-46 |
| MS.gene051852 | MS.gene35800 | 0.805163 | 1.52E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene35800 | 0.852274 | 5.14E-61 | -1.69E-46 |
| MS.gene052463 | MS.gene35800 | 0.805217 | 1.49E-49 | -1.69E-46 |
| MS.gene052533 | MS.gene35800 | 0.843317 | 1.51E-58 | -1.69E-46 |
| MS.gene052609 | MS.gene35800 | 0.825594 | 4.31E-54 | -1.69E-46 |
| MS.gene053143 | MS.gene35800 | 0.817229 | 3.67E-52 | -1.69E-46 |
| MS.gene055386 | MS.gene35800 | 0.805582 | 1.25E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene35800 | 0.847184 | 1.36E-59 | -1.69E-46 |
| MS.gene056181 | MS.gene35800 | 0.823463 | 1.37E-53 | -1.69E-46 |
| MS.gene056699 | MS.gene35800 | 0.826375 | 2.81E-54 | -1.69E-46 |
| MS.gene056881 | MS.gene35800 | 0.816035 | 6.80E-52 | -1.69E-46 |
| MS.gene059965 | MS.gene35800 | 0.809979 | 1.45E-50 | -1.69E-46 |
| MS.gene060933 | MS.gene35800 | 0.813746 | 2.19E-51 | -1.69E-46 |
| MS.gene060937 | MS.gene35800 | 0.803442 | 3.48E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene35800 | 0.802378 | 5.77E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35800.t1 | MTR_2g088700 | 99.190 | 247 | 2 | 0 | 1 | 247 | 7 | 253 | 0.0 | 499 |
| MS.gene35800.t1 | MTR_2g088700 | 99.190 | 247 | 2 | 0 | 1 | 247 | 7 | 253 | 0.0 | 498 |
| MS.gene35800.t1 | MTR_6g028140 | 61.207 | 232 | 89 | 1 | 16 | 247 | 18 | 248 | 2.28e-98 | 289 |
| MS.gene35800.t1 | MTR_4g090900 | 49.309 | 217 | 110 | 0 | 31 | 247 | 32 | 248 | 4.49e-72 | 223 |
| MS.gene35800.t1 | MTR_2g012270 | 48.387 | 217 | 112 | 0 | 31 | 247 | 31 | 247 | 2.72e-70 | 218 |
| MS.gene35800.t1 | MTR_1g056550 | 44.186 | 215 | 120 | 0 | 33 | 247 | 41 | 255 | 3.62e-61 | 194 |
| MS.gene35800.t1 | MTR_1g056560 | 44.700 | 217 | 120 | 0 | 31 | 247 | 43 | 259 | 1.36e-60 | 194 |
| MS.gene35800.t1 | MTR_5g012010 | 44.628 | 242 | 122 | 4 | 10 | 245 | 29 | 264 | 6.93e-60 | 192 |
| MS.gene35800.t1 | MTR_7g106420 | 40.465 | 215 | 128 | 0 | 33 | 247 | 28 | 242 | 6.12e-52 | 171 |
| MS.gene35800.t1 | MTR_5g020670 | 35.498 | 231 | 137 | 4 | 17 | 245 | 25 | 245 | 9.64e-38 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35800.t1 | AT3G03800 | 63.248 | 234 | 85 | 1 | 13 | 246 | 16 | 248 | 1.70e-102 | 300 |
| MS.gene35800.t1 | AT3G03800 | 63.248 | 234 | 85 | 1 | 13 | 246 | 16 | 248 | 1.70e-102 | 300 |
| MS.gene35800.t1 | AT5G08080 | 65.289 | 242 | 81 | 1 | 6 | 247 | 10 | 248 | 1.68e-98 | 290 |
| MS.gene35800.t1 | AT5G08080 | 65.289 | 242 | 81 | 1 | 6 | 247 | 10 | 248 | 1.68e-98 | 290 |
| MS.gene35800.t1 | AT5G08080 | 61.660 | 253 | 83 | 2 | 6 | 247 | 10 | 259 | 1.39e-95 | 283 |
| MS.gene35800.t1 | AT1G11250 | 46.552 | 232 | 118 | 1 | 16 | 247 | 17 | 242 | 1.49e-69 | 216 |
| MS.gene35800.t1 | AT5G08080 | 61.856 | 194 | 71 | 1 | 6 | 199 | 10 | 200 | 9.32e-69 | 211 |
| MS.gene35800.t1 | AT5G08080 | 61.856 | 194 | 71 | 1 | 6 | 199 | 10 | 200 | 9.32e-69 | 211 |
| MS.gene35800.t1 | AT1G61290 | 42.276 | 246 | 136 | 1 | 2 | 247 | 8 | 247 | 2.72e-64 | 202 |
| MS.gene35800.t1 | AT1G61290 | 42.276 | 246 | 136 | 1 | 2 | 247 | 8 | 247 | 2.72e-64 | 202 |
| MS.gene35800.t1 | AT3G11820 | 43.033 | 244 | 133 | 1 | 10 | 247 | 15 | 258 | 3.94e-63 | 201 |
| MS.gene35800.t1 | AT3G11820 | 45.249 | 221 | 121 | 0 | 27 | 247 | 7 | 227 | 6.20e-63 | 199 |
| MS.gene35800.t1 | AT4G03330 | 44.248 | 226 | 125 | 1 | 22 | 246 | 24 | 249 | 1.47e-62 | 198 |
| MS.gene35800.t1 | AT3G52400 | 41.532 | 248 | 141 | 2 | 2 | 245 | 8 | 255 | 1.02e-57 | 187 |
| MS.gene35800.t1 | AT1G08560 | 38.696 | 230 | 135 | 3 | 17 | 245 | 30 | 254 | 1.37e-47 | 160 |
| MS.gene35800.t1 | AT2G18260 | 33.937 | 221 | 125 | 3 | 33 | 246 | 47 | 253 | 2.40e-36 | 130 |
| MS.gene35800.t1 | AT2G18260 | 33.937 | 221 | 125 | 3 | 33 | 246 | 47 | 253 | 2.40e-36 | 130 |
Find 0 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTACTTATTTAAAAAGTATA+TGG | - | 15127:18914-18933 | MS.gene35800:intron | 10.0% |
| !! | AAAAATCACTTAACTATATA+CGG | + | 15127:19286-19305 | None:intergenic | 15.0% |
| !! | AAAGTTTAATTCAGAAAATT+TGG | - | 15127:19553-19572 | MS.gene35800:intron | 15.0% |
| !! | AAGTTTAATTCAGAAAATTT+GGG | - | 15127:19554-19573 | MS.gene35800:intron | 15.0% |
| !! | AATCTGAAAAATAATATGAT+AGG | + | 15127:19746-19765 | None:intergenic | 15.0% |
| !! | TGTTATATAGATTTCAAATA+CGG | - | 15127:18452-18471 | MS.gene35800:CDS | 15.0% |
| !!! | AATTTTACAAATTCAAATGT+TGG | + | 15127:17493-17512 | None:intergenic | 15.0% |
| !!! | TATTCATTTTTTTTCATAGT+AGG | - | 15127:19396-19415 | MS.gene35800:intron | 15.0% |
| !! | AAAAAAATACCAGTAAACTT+AGG | + | 15127:17835-17854 | None:intergenic | 20.0% |
| !! | AATATTTATCTAGTTGACAA+TGG | - | 15127:19695-19714 | MS.gene35800:intron | 20.0% |
| !! | TTCAATGTAATCATATGTAT+CGG | + | 15127:17404-17423 | None:intergenic | 20.0% |
| ! | AAAACTTCTTGATTTACATC+AGG | - | 15127:19645-19664 | MS.gene35800:intron | 25.0% |
| ! | AACACAGTTAACTTTATCAA+GGG | + | 15127:18874-18893 | None:intergenic | 25.0% |
| ! | ACGGATAAAAAATAGTTAAC+CGG | - | 15127:18471-18490 | MS.gene35800:CDS | 25.0% |
| ! | ATCACAAAGTTAAAAACACA+AGG | + | 15127:18949-18968 | None:intergenic | 25.0% |
| ! | ATTCATCTTGTATTCTTTGT+CGG | + | 15127:18802-18821 | None:intergenic | 25.0% |
| ! | ATTGAATATCCTAAGTTTAC+TGG | - | 15127:17823-17842 | MS.gene35800:CDS | 25.0% |
| ! | GCAAAAACAAAATGGTTATA+AGG | + | 15127:17970-17989 | None:intergenic | 25.0% |
| ! | TAAGTTTGGCAAAAACAAAA+TGG | + | 15127:17978-17997 | None:intergenic | 25.0% |
| ! | TCACAAAGTTAAAAACACAA+GGG | + | 15127:18948-18967 | None:intergenic | 25.0% |
| ! | TGAGATGATAAACATAAACT+TGG | + | 15127:18751-18770 | None:intergenic | 25.0% |
| ! | TTTAGTAACGGTTATAAGTT+TGG | + | 15127:17992-18011 | None:intergenic | 25.0% |
| !! | AATGGAAGCTTTTAATAAAC+AGG | - | 15127:17270-17289 | MS.gene35800:intron | 25.0% |
| !! | TTTTCAGATTTACCTTGATA+TGG | - | 15127:19756-19775 | MS.gene35800:CDS | 25.0% |
| !! | TTTTTCGTATTTTCATCTCA+TGG | - | 15127:19301-19320 | MS.gene35800:intron | 25.0% |
| !!! | TGCATAAGTTTTGGTTTAAT+TGG | - | 15127:19061-19080 | MS.gene35800:intron | 25.0% |
| AAACCAAAACTTATGCATAG+CGG | + | 15127:19058-19077 | None:intergenic | 30.0% | |
| AAATAGATGTGATGTCAGAA+TGG | + | 15127:18250-18269 | None:intergenic | 30.0% | |
| AATACAAGATGAATATCGTG+AGG | - | 15127:18808-18827 | MS.gene35800:intron | 30.0% | |
| ACACAGTTAACTTTATCAAG+GGG | + | 15127:18873-18892 | None:intergenic | 30.0% | |
| AGACAAGGTGATATTGAAAT+GGG | - | 15127:17214-17233 | MS.gene35800:CDS | 30.0% | |
| AGAGACAAAATCAATTCCAA+TGG | - | 15127:17663-17682 | MS.gene35800:intron | 30.0% | |
| ATTCTGCATAAAACATATCC+CGG | + | 15127:18493-18512 | None:intergenic | 30.0% | |
| CAACACAGTTAACTTTATCA+AGG | + | 15127:18875-18894 | None:intergenic | 30.0% | |
| CATATTTGAGTGATTTCCAT+TGG | + | 15127:17682-17701 | None:intergenic | 30.0% | |
| CATTGTAACAATACCTTTCA+TGG | + | 15127:18069-18088 | None:intergenic | 30.0% | |
| CGGATAAAAAATAGTTAACC+GGG | - | 15127:18472-18491 | MS.gene35800:CDS | 30.0% | |
| GAAAAGGATATTGATGAAGT+TGG | - | 15127:18337-18356 | MS.gene35800:intron | 30.0% | |
| GAAACTTCTAATTCGCATTA+TGG | + | 15127:19434-19453 | None:intergenic | 30.0% | |
| TAGACAAGGTGATATTGAAA+TGG | - | 15127:17213-17232 | MS.gene35800:CDS | 30.0% | |
| TATCAAAAAGAGGATGGAAA+AGG | - | 15127:18321-18340 | MS.gene35800:intron | 30.0% | |
| TGATTTACATCAGGTTTACT+TGG | - | 15127:19654-19673 | MS.gene35800:intron | 30.0% | |
| TGCTGATAAACAAATTGAGA+AGG | - | 15127:17876-17895 | MS.gene35800:CDS | 30.0% | |
| TTCATTATACCCTGTATGTT+TGG | + | 15127:17758-17777 | None:intergenic | 30.0% | |
| TTGAATGTAACAATCACGTT+TGG | - | 15127:17592-17611 | MS.gene35800:intron | 30.0% | |
| ! | CAATTTGTTTATCAGCATCT+TGG | + | 15127:17873-17892 | None:intergenic | 30.0% |
| ! | GCAAAAAGTGCATTTAGTAA+CGG | + | 15127:18004-18023 | None:intergenic | 30.0% |
| ! | TTAAAAGTGAGTTGAATGTG+AGG | - | 15127:17521-17540 | MS.gene35800:intron | 30.0% |
| !! | ATCTCTGAACTTTTTAGTCA+AGG | + | 15127:18670-18689 | None:intergenic | 30.0% |
| !! | TTACTAAATGCACTTTTTGC+AGG | - | 15127:18004-18023 | MS.gene35800:intron | 30.0% |
| !!! | TCATAAGATTTTGCTGTTAC+TGG | - | 15127:18136-18155 | MS.gene35800:intron | 30.0% |
| AAGTTAACTGTGTTGCACTA+TGG | - | 15127:18880-18899 | MS.gene35800:intron | 35.0% | |
| AAGTTGGAAAGATTGCACAT+GGG | - | 15127:18353-18372 | MS.gene35800:intron | 35.0% | |
| ACTGTGAAACCAAACATACA+GGG | - | 15127:17746-17765 | MS.gene35800:intron | 35.0% | |
| ATAAATCAAGTACCTGTCCT+CGG | + | 15127:19175-19194 | None:intergenic | 35.0% | |
| ATAGCTGAGAATGATGTAAG+AGG | + | 15127:18304-18323 | None:intergenic | 35.0% | |
| ATGTGATGTCAGAATGGAAA+AGG | + | 15127:18244-18263 | None:intergenic | 35.0% | |
| ATTCTTCAGTTACCGGAAAT+AGG | - | 15127:18980-18999 | MS.gene35800:intron | 35.0% | |
| CATTCTCAGCTATCAAAAAG+AGG | - | 15127:18311-18330 | MS.gene35800:CDS | 35.0% | |
| CTAAACAATAGACAAAAGCC+TGG | - | 15127:18513-18532 | MS.gene35800:intron | 35.0% | |
| GAAAAACAGCTTCTAGTGTT+AGG | + | 15127:18729-18748 | None:intergenic | 35.0% | |
| GTATAGATACACCTCAGATT+AGG | - | 15127:17337-17356 | MS.gene35800:CDS | 35.0% | |
| GTGGAAAGAAGAGTTATTAC+AGG | - | 15127:18833-18852 | MS.gene35800:intron | 35.0% | |
| GTTTACTTGGAAGAAGATCT+TGG | - | 15127:19667-19686 | MS.gene35800:intron | 35.0% | |
| TAAAGTTAACTGTGTGTGTC+TGG | - | 15127:17703-17722 | MS.gene35800:intron | 35.0% | |
| TACTGTGAAACCAAACATAC+AGG | - | 15127:17745-17764 | MS.gene35800:intron | 35.0% | |
| TCAATATCACCTTGTCTAGA+AGG | + | 15127:17211-17230 | None:intergenic | 35.0% | |
| TGACTTGATTCTTCAGTTAC+CGG | - | 15127:18973-18992 | MS.gene35800:intron | 35.0% | |
| TTTGTTAGTGAGGCTAATCA+TGG | - | 15127:17181-17200 | MS.gene35800:CDS | 35.0% | |
| ! | CAAAGAAGCAGTTCTGATAT+GGG | - | 15127:17247-17266 | MS.gene35800:intron | 35.0% |
| ! | TATCCGCTATGCATAAGTTT+TGG | - | 15127:19052-19071 | MS.gene35800:intron | 35.0% |
| ! | TCAAAGAAGCAGTTCTGATA+TGG | - | 15127:17246-17265 | MS.gene35800:intron | 35.0% |
| ! | TGTATGTTTGGTTTCACAGT+AGG | + | 15127:17746-17765 | None:intergenic | 35.0% |
| ! | TTGTTTCTTGAGCTTAAAGG+AGG | - | 15127:19359-19378 | MS.gene35800:intron | 35.0% |
| !! | GTGTTGTTTCTTGAGCTTAA+AGG | - | 15127:19356-19375 | MS.gene35800:intron | 35.0% |
| !!! | CGATTTGTTTTTTGCTTGTG+TGG | - | 15127:19507-19526 | MS.gene35800:intron | 35.0% |
| AGATGAATATCGTGAGGTTG+TGG | - | 15127:18814-18833 | MS.gene35800:intron | 40.0% | |
| AGTTGGAAAGATTGCACATG+GGG | - | 15127:18354-18373 | MS.gene35800:intron | 40.0% | |
| ATCAAACTCACCTCATCATC+TGG | + | 15127:19006-19025 | None:intergenic | 40.0% | |
| ATTGACCACCTGATAGAAAC+TGG | - | 15127:19107-19126 | MS.gene35800:CDS | 40.0% | |
| CAACTAAGACTGCCATATCA+AGG | + | 15127:19771-19790 | None:intergenic | 40.0% | |
| CACTGTTTCCAGTTTCTATC+AGG | + | 15127:19118-19137 | None:intergenic | 40.0% | |
| CATTCTTGCTCTGTCAATAC+CGG | + | 15127:18553-18572 | None:intergenic | 40.0% | |
| CTCAGCTATCAAAAAGAGGA+TGG | - | 15127:18315-18334 | MS.gene35800:CDS | 40.0% | |
| GAAGTTGGAAAGATTGCACA+TGG | - | 15127:18352-18371 | MS.gene35800:intron | 40.0% | |
| GTCAAGGAACTGCAATTTCA+AGG | + | 15127:18654-18673 | None:intergenic | 40.0% | |
| GTGTTTCAGACTAACATACC+TGG | + | 15127:18707-18726 | None:intergenic | 40.0% | |
| TCATCTCATGGACGAGATAT+TGG | - | 15127:19313-19332 | MS.gene35800:intron | 40.0% | |
| TGTTTCCAGTTTCTATCAGG+TGG | + | 15127:19115-19134 | None:intergenic | 40.0% | |
| TTTAGACAACATCGAAAGCC+AGG | - | 15127:19807-19826 | MS.gene35800:CDS | 40.0% | |
| ! | AAAGTGAGTTGAATGTGAGG+TGG | - | 15127:17524-17543 | MS.gene35800:intron | 40.0% |
| ! | AAGCAGTTCTGATATGGGAA+TGG | - | 15127:17252-17271 | MS.gene35800:intron | 40.0% |
| ! | ATATGTATCGGTGTCTTCGT+CGG | + | 15127:17392-17411 | None:intergenic | 40.0% |
| ! | CTGTTACTGGTTACTGAATC+AGG | - | 15127:18149-18168 | MS.gene35800:CDS | 40.0% |
| ! | CTTTTTGCAGGAAGCTAATG+AGG | - | 15127:18016-18035 | MS.gene35800:intron | 40.0% |
| ! | GAGCACTGTAGAAGAAATTC+AGG | - | 15127:19591-19610 | MS.gene35800:intron | 40.0% |
| !! | ACAAAAGCATCTGCCATGAA+AGG | - | 15127:18053-18072 | MS.gene35800:intron | 40.0% |
| !! | CAGAAAATTTGGGTTGTTGC+AGG | - | 15127:19564-19583 | MS.gene35800:intron | 40.0% |
| !!! | CTTTAGCTTTTGAAGTAGCG+CGG | + | 15127:17905-17924 | None:intergenic | 40.0% |
| AGATCTCATGACAGAGTTCC+AGG | - | 15127:18686-18705 | MS.gene35800:intron | 45.0% | |
| CATGGACAACCTTCTAGACA+AGG | - | 15127:17199-17218 | MS.gene35800:CDS | 45.0% | |
| CGCGCTACTTCAAAAGCTAA+AGG | - | 15127:17903-17922 | MS.gene35800:intron | 45.0% | |
| CTCATCATCTGGCCTATTTC+CGG | + | 15127:18995-19014 | None:intergenic | 45.0% | |
| TCATGGACGAGATATTGGTG+TGG | - | 15127:19318-19337 | MS.gene35800:intron | 45.0% | |
| ! | GCAGTCTTAGTTGATGCTCA+AGG | - | 15127:19778-19797 | MS.gene35800:CDS | 45.0% |
| !!! | TTTTCAAAATAAAAAAAATA+CGG | + | 15127:19212-19231 | None:intergenic | 5.0% |
| ACAAAAGCCTGGCTGTGAGA+AGG | - | 15127:18524-18543 | MS.gene35800:intron | 50.0% | |
| CAAAAGCCTGGCTGTGAGAA+GGG | - | 15127:18525-18544 | MS.gene35800:intron | 50.0% | |
| CAGCAGGCAATTCTTGAAGC+AGG | - | 15127:19149-19168 | MS.gene35800:intron | 50.0% | |
| CAGTGAGCAAATCTTCCAGC+AGG | - | 15127:19133-19152 | MS.gene35800:intron | 50.0% | |
| CATGATAGGTATCCGACACC+AGG | + | 15127:17368-17387 | None:intergenic | 50.0% | |
| CGAGATATTGGTGTGGTGAG+CGG | - | 15127:19325-19344 | MS.gene35800:intron | 50.0% | |
| CGGAAATAGGCCAGATGATG+AGG | - | 15127:18993-19012 | MS.gene35800:intron | 50.0% | |
| CTGCTTCAAGAATTGCCTGC+TGG | + | 15127:19151-19170 | None:intergenic | 50.0% | |
| GTGTCTTCGTCGGACATGAT+AGG | + | 15127:17382-17401 | None:intergenic | 50.0% | |
| TGTTCGTGTCTGTGCTGCAT+AGG | - | 15127:17460-17479 | MS.gene35800:intron | 50.0% | |
| ACCAGGACACGCCTAATCTG+AGG | + | 15127:17351-17370 | None:intergenic | 55.0% | |
| ACCTCAGATTAGGCGTGTCC+TGG | - | 15127:17347-17366 | MS.gene35800:CDS | 55.0% | |
| GATTAGGCGTGTCCTGGTGT+CGG | - | 15127:17353-17372 | MS.gene35800:CDS | 55.0% | |
| GCAATTCTTGAAGCAGGCCG+AGG | - | 15127:19155-19174 | MS.gene35800:intron | 55.0% | |
| TCTTGAAGCAGGCCGAGGAC+AGG | - | 15127:19160-19179 | MS.gene35800:intron | 60.0% | |
| ! | CCTGGCTGTGAGAAGGGCAC+CGG | - | 15127:18531-18550 | MS.gene35800:intron | 65.0% |
| CCGGTGCCCTTCTCACAGCC+AGG | + | 15127:18534-18553 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 15127 | gene | 17175 | 19828 | 17175 | ID=MS.gene35800 |
| 15127 | mRNA | 17175 | 19828 | 17175 | ID=MS.gene35800.t1;Parent=MS.gene35800 |
| 15127 | exon | 19712 | 19828 | 19712 | ID=MS.gene35800.t1.exon1;Parent=MS.gene35800.t1 |
| 15127 | CDS | 19712 | 19828 | 19712 | ID=cds.MS.gene35800.t1;Parent=MS.gene35800.t1 |
| 15127 | exon | 19079 | 19135 | 19079 | ID=MS.gene35800.t1.exon2;Parent=MS.gene35800.t1 |
| 15127 | CDS | 19079 | 19135 | 19079 | ID=cds.MS.gene35800.t1;Parent=MS.gene35800.t1 |
| 15127 | exon | 18929 | 18977 | 18929 | ID=MS.gene35800.t1.exon3;Parent=MS.gene35800.t1 |
| 15127 | CDS | 18929 | 18977 | 18929 | ID=cds.MS.gene35800.t1;Parent=MS.gene35800.t1 |
| 15127 | exon | 18595 | 18683 | 18595 | ID=MS.gene35800.t1.exon4;Parent=MS.gene35800.t1 |
| 15127 | CDS | 18595 | 18683 | 18595 | ID=cds.MS.gene35800.t1;Parent=MS.gene35800.t1 |
| 15127 | exon | 18420 | 18493 | 18420 | ID=MS.gene35800.t1.exon5;Parent=MS.gene35800.t1 |
| 15127 | CDS | 18420 | 18493 | 18420 | ID=cds.MS.gene35800.t1;Parent=MS.gene35800.t1 |
| 15127 | exon | 18296 | 18338 | 18296 | ID=MS.gene35800.t1.exon6;Parent=MS.gene35800.t1 |
| 15127 | CDS | 18296 | 18338 | 18296 | ID=cds.MS.gene35800.t1;Parent=MS.gene35800.t1 |
| 15127 | exon | 18149 | 18209 | 18149 | ID=MS.gene35800.t1.exon7;Parent=MS.gene35800.t1 |
| 15127 | CDS | 18149 | 18209 | 18149 | ID=cds.MS.gene35800.t1;Parent=MS.gene35800.t1 |
| 15127 | exon | 17989 | 18014 | 17989 | ID=MS.gene35800.t1.exon8;Parent=MS.gene35800.t1 |
| 15127 | CDS | 17989 | 18014 | 17989 | ID=cds.MS.gene35800.t1;Parent=MS.gene35800.t1 |
| 15127 | exon | 17822 | 17899 | 17822 | ID=MS.gene35800.t1.exon9;Parent=MS.gene35800.t1 |
| 15127 | CDS | 17822 | 17899 | 17822 | ID=cds.MS.gene35800.t1;Parent=MS.gene35800.t1 |
| 15127 | exon | 17337 | 17417 | 17337 | ID=MS.gene35800.t1.exon10;Parent=MS.gene35800.t1 |
| 15127 | CDS | 17337 | 17417 | 17337 | ID=cds.MS.gene35800.t1;Parent=MS.gene35800.t1 |
| 15127 | exon | 17175 | 17240 | 17175 | ID=MS.gene35800.t1.exon11;Parent=MS.gene35800.t1 |
| 15127 | CDS | 17175 | 17240 | 17175 | ID=cds.MS.gene35800.t1;Parent=MS.gene35800.t1 |
| Gene Sequence |
| Protein sequence |
