Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36447.t1 | XP_013457305.1 | 97.9 | 238 | 5 | 0 | 1 | 238 | 1 | 238 | 1.50E-136 | 495.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36447.t1 | O48916 | 62.7 | 228 | 85 | 0 | 1 | 228 | 1 | 228 | 8.6e-88 | 324.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36447.t1 | B7FND9 | 97.9 | 238 | 5 | 0 | 1 | 238 | 1 | 238 | 1.1e-136 | 495.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene36447 | -0.804551 | 2.05E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene36447 | -0.821028 | 5.02E-53 | -1.69E-46 |
| MS.gene049419 | MS.gene36447 | 0.803335 | 3.66E-49 | -1.69E-46 |
| MS.gene049669 | MS.gene36447 | -0.80091 | 1.15E-48 | -1.69E-46 |
| MS.gene050227 | MS.gene36447 | -0.805444 | 1.33E-49 | -1.69E-46 |
| MS.gene050228 | MS.gene36447 | -0.821845 | 3.25E-53 | -1.69E-46 |
| MS.gene050623 | MS.gene36447 | 0.811852 | 5.69E-51 | -1.69E-46 |
| MS.gene050642 | MS.gene36447 | -0.807319 | 5.36E-50 | -1.69E-46 |
| MS.gene051064 | MS.gene36447 | -0.815871 | 7.40E-52 | -1.69E-46 |
| MS.gene051368 | MS.gene36447 | -0.835223 | 1.90E-56 | -1.69E-46 |
| MS.gene051983 | MS.gene36447 | -0.819584 | 1.08E-52 | -1.69E-46 |
| MS.gene052176 | MS.gene36447 | -0.805513 | 1.29E-49 | -1.69E-46 |
| MS.gene052333 | MS.gene36447 | -0.833037 | 6.71E-56 | -1.69E-46 |
| MS.gene054479 | MS.gene36447 | -0.801551 | 8.54E-49 | -1.69E-46 |
| MS.gene055225 | MS.gene36447 | -0.816169 | 6.35E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene36447 | -0.860477 | 2.01E-63 | -1.69E-46 |
| MS.gene05595 | MS.gene36447 | -0.80453 | 2.07E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene36447 | -0.809165 | 2.17E-50 | -1.69E-46 |
| MS.gene056979 | MS.gene36447 | -0.806116 | 9.62E-50 | -1.69E-46 |
| MS.gene057156 | MS.gene36447 | 0.862035 | 6.74E-64 | -1.69E-46 |
| MS.gene058223 | MS.gene36447 | 0.822417 | 2.40E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36447.t1 | MTR_4g094525 | 97.899 | 238 | 5 | 0 | 1 | 238 | 1 | 238 | 4.07e-175 | 481 |
| MS.gene36447.t1 | MTR_4g094525 | 85.294 | 238 | 4 | 1 | 1 | 238 | 1 | 207 | 5.16e-144 | 401 |
| MS.gene36447.t1 | MTR_2g031370 | 69.068 | 236 | 72 | 1 | 1 | 236 | 13 | 247 | 8.22e-125 | 354 |
| MS.gene36447.t1 | MTR_2g031370 | 68.776 | 237 | 73 | 1 | 1 | 237 | 1 | 236 | 1.33e-124 | 353 |
| MS.gene36447.t1 | MTR_4g094522 | 82.609 | 115 | 20 | 0 | 1 | 115 | 1 | 115 | 6.82e-57 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36447.t1 | AT2G34770 | 63.158 | 228 | 84 | 0 | 1 | 228 | 1 | 228 | 2.14e-108 | 312 |
| MS.gene36447.t1 | AT4G20870 | 61.603 | 237 | 90 | 1 | 1 | 237 | 1 | 236 | 1.03e-106 | 308 |
| MS.gene36447.t1 | AT4G20870 | 61.603 | 237 | 90 | 1 | 1 | 237 | 1 | 236 | 1.03e-106 | 308 |
Find 67 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGGTGATTCCAATTATT+TGG | 0.142082 | 4.1:+18780615 | MS.gene36447:CDS |
| ATGGGTTCATCAACCTATTA+TGG | 0.183910 | 4.1:+18780340 | MS.gene36447:CDS |
| GCAATTGGAACCCAAATAAT+TGG | 0.230184 | 4.1:-18780626 | None:intergenic |
| TTGGTGAAGATTATGATAAA+TGG | 0.262773 | 4.1:+18780321 | MS.gene36447:CDS |
| AAAAGAGGGAGGTGAGGAAC+AGG | 0.286347 | 4.1:-18780686 | None:intergenic |
| TCAATTGCTCCTGCTGTGTT+TGG | 0.295260 | 4.1:+18781723 | MS.gene36447:CDS |
| GTGGGTGATTCCAATTATTT+GGG | 0.302503 | 4.1:+18780616 | MS.gene36447:CDS |
| TTGGCATCACTTCACCACTA+TGG | 0.307245 | 4.1:+18782367 | MS.gene36447:CDS |
| GGGCCTTCCTTGCCCATAAT+AGG | 0.340890 | 4.1:-18780353 | None:intergenic |
| ATGTTCAAACTAAGAGCTAT+TGG | 0.342050 | 4.1:+18780771 | MS.gene36447:CDS |
| AGCTATCCATAGGGTGCTTA+TGG | 0.348531 | 4.1:-18780829 | None:intergenic |
| GAATAAACCCCTTGTTTGTC+AGG | 0.349453 | 4.1:+18780067 | MS.gene36447:CDS |
| TTTCTTTCATAGCAGTATCT+TGG | 0.357754 | 4.1:+18780379 | MS.gene36447:CDS |
| TGTTCAAACTAAGAGCTATT+GGG | 0.361825 | 4.1:+18780772 | MS.gene36447:CDS |
| AATTGTTACTTATCTACGTT+TGG | 0.364138 | 4.1:-18782433 | None:intergenic |
| CATTTATAACTCTTTCAGAT+TGG | 0.376626 | 4.1:+18780658 | MS.gene36447:CDS |
| ATTTATAACTCTTTCAGATT+GGG | 0.403789 | 4.1:+18780659 | MS.gene36447:CDS |
| AGGGTCCAGAGCCTTGGCTT+TGG | 0.410334 | 4.1:+18782348 | MS.gene36447:CDS |
| CACTTCACCACTATGGGATA+AGG | 0.426484 | 4.1:+18782374 | MS.gene36447:CDS |
| TGGGTTCATCAACCTATTAT+GGG | 0.432385 | 4.1:+18780341 | MS.gene36447:CDS |
| AAAACGGTGCAATAAGTATT+CGG | 0.433689 | 4.1:-18780741 | None:intergenic |
| TGGTGAAGATTATGATAAAT+GGG | 0.434108 | 4.1:+18780322 | MS.gene36447:CDS |
| ATTGCTCCTGCTGTGTTTGG+AGG | 0.436809 | 4.1:+18781726 | MS.gene36447:CDS |
| ACCATTTGAATCATCACTAC+AGG | 0.439539 | 4.1:+18782328 | MS.gene36447:CDS |
| TGATGCCAAAGCCAAGGCTC+TGG | 0.469577 | 4.1:-18782353 | None:intergenic |
| TTTGAACATGGAAAAGAAAA+CGG | 0.472915 | 4.1:-18780757 | None:intergenic |
| CTTTCATAGCAGTATCTTGG+AGG | 0.476416 | 4.1:+18780382 | MS.gene36447:CDS |
| CACTACAGGGTCCAGAGCCT+TGG | 0.478105 | 4.1:+18782342 | MS.gene36447:CDS |
| TGGCATCACTTCACCACTAT+GGG | 0.480111 | 4.1:+18782368 | MS.gene36447:CDS |
| ACACATTATTACTTGCATCA+TGG | 0.488209 | 4.1:+18781780 | MS.gene36447:CDS |
| ACAAGTCTTAAGCTATCCAT+AGG | 0.497021 | 4.1:-18780839 | None:intergenic |
| TAAATGAAACAAGATGCAAT+TGG | 0.498395 | 4.1:-18780641 | None:intergenic |
| ATGTGACAGGTTGGTCATCT+TGG | 0.510797 | 4.1:+18780302 | MS.gene36447:intron |
| CAACCTATTATGGGCAAGGA+AGG | 0.526322 | 4.1:+18780350 | MS.gene36447:CDS |
| AACACAGCAGGAGCAATTGA+AGG | 0.534894 | 4.1:-18781720 | None:intergenic |
| GGTGCTTATGGTGGCAACCA+TGG | 0.543946 | 4.1:-18780817 | None:intergenic |
| GCTATTAAAGCGGCTCCAGC+TGG | 0.544240 | 4.1:-18780869 | None:intergenic |
| ACATTGCATTATCTTCTCCA+TGG | 0.544817 | 4.1:+18780800 | MS.gene36447:CDS |
| ATGCCGAGTAGCACGAAAAG+AGG | 0.548185 | 4.1:-18780701 | None:intergenic |
| TTTCACGCGAACTGCTTGGT+GGG | 0.549072 | 4.1:+18780598 | MS.gene36447:CDS |
| GGTTCCTCCTCCATCAAAAG+TGG | 0.554501 | 4.1:+18782407 | MS.gene36447:CDS |
| ATTAAAGCGGCTCCAGCTGG+TGG | 0.557678 | 4.1:-18780866 | None:intergenic |
| AGTTGGTTACCTGACAAACA+AGG | 0.563299 | 4.1:-18780076 | None:intergenic |
| TTGCCACCATAAGCACCCTA+TGG | 0.565998 | 4.1:+18780823 | MS.gene36447:CDS |
| AGCCGCTTTAATAGCCTACA+TGG | 0.576385 | 4.1:+18780877 | MS.gene36447:CDS |
| GTTCAAACTAAGAGCTATTG+GGG | 0.580121 | 4.1:+18780773 | MS.gene36447:CDS |
| AGCACGAAAAGAGGGAGGTG+AGG | 0.582858 | 4.1:-18780692 | None:intergenic |
| CCCTGTAGTGATGATTCAAA+TGG | 0.586439 | 4.1:-18782329 | None:intergenic |
| TCATCAACCTATTATGGGCA+AGG | 0.588235 | 4.1:+18780346 | MS.gene36447:CDS |
| AATAGCTCTTAGTTTGAACA+TGG | 0.589170 | 4.1:-18780769 | None:intergenic |
| TAGAAAGGGGTATACCATGT+AGG | 0.600427 | 4.1:-18780891 | None:intergenic |
| AAAATGCCTCCAAACACAGC+AGG | 0.605294 | 4.1:-18781732 | None:intergenic |
| CAAGTCTTAAGCTATCCATA+GGG | 0.618487 | 4.1:-18780838 | None:intergenic |
| TGCCGAGTAGCACGAAAAGA+GGG | 0.619206 | 4.1:-18780700 | None:intergenic |
| TATCCATAGGGTGCTTATGG+TGG | 0.620677 | 4.1:-18780826 | None:intergenic |
| GTGAAGTGATGCCAAAGCCA+AGG | 0.625285 | 4.1:-18782359 | None:intergenic |
| ACAGCAGGAGCAATTGAAGG+AGG | 0.629758 | 4.1:-18781717 | None:intergenic |
| CCATTTGAATCATCACTACA+GGG | 0.637039 | 4.1:+18782329 | MS.gene36447:CDS |
| AAAGAGGGAGGTGAGGAACA+GGG | 0.637398 | 4.1:-18780685 | None:intergenic |
| GTTGGTTACCTGACAAACAA+GGG | 0.639760 | 4.1:-18780075 | None:intergenic |
| TTGGTTACCTGACAAACAAG+GGG | 0.643258 | 4.1:-18780074 | None:intergenic |
| CAGCAGGAGCAATTGAAGGA+GGG | 0.648334 | 4.1:-18781716 | None:intergenic |
| TACTGCTATGAAAGAAACGA+GGG | 0.655830 | 4.1:-18780373 | None:intergenic |
| TACCATGTAGGCTATTAAAG+CGG | 0.682242 | 4.1:-18780879 | None:intergenic |
| CGAGTAGCACGAAAAGAGGG+AGG | 0.696341 | 4.1:-18780697 | None:intergenic |
| ATACTGCTATGAAAGAAACG+AGG | 0.714480 | 4.1:-18780374 | None:intergenic |
| AGGGAATACAAGCTTCACTG+AGG | 0.754775 | 4.1:-18781697 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATAAACTCTTTATTA+TGG | + | chr4.1:18781030-18781049 | MS.gene36447:intron | 10.0% |
| !!! | ATAATCAATTTTAATGCATA+TGG | - | chr4.1:18780456-18780475 | None:intergenic | 15.0% |
| !!! | TCAACTATTTTAAAGAAATT+TGG | + | chr4.1:18782090-18782109 | MS.gene36447:intron | 15.0% |
| !!! | TGCATTAAAATTGATTATTT+TGG | + | chr4.1:18780458-18780477 | MS.gene36447:intron | 15.0% |
| !! | AAAAAAAAAGTGAATTGAGT+TGG | - | chr4.1:18780096-18780115 | None:intergenic | 20.0% |
| !! | AAATCATGCATATAATGAAA+AGG | - | chr4.1:18780946-18780965 | None:intergenic | 20.0% |
| !! | AACAAAAGAAAAATGTAGAA+AGG | - | chr4.1:18780909-18780928 | None:intergenic | 20.0% |
| !! | ACAAAAGAAAAATGTAGAAA+GGG | - | chr4.1:18780908-18780927 | None:intergenic | 20.0% |
| !! | ATAATATTTGACATACTTGT+AGG | + | chr4.1:18781314-18781333 | MS.gene36447:intron | 20.0% |
| !! | ATGAAAATTTAATGTAGGTA+GGG | - | chr4.1:18780424-18780443 | None:intergenic | 20.0% |
| !! | ATTATTAAGATTTGTGTTGT+TGG | + | chr4.1:18780568-18780587 | MS.gene36447:intron | 20.0% |
| !! | ATTTATAACTCTTTCAGATT+GGG | + | chr4.1:18780659-18780678 | MS.gene36447:CDS | 20.0% |
| !! | GAATGATGAAAATTTAATGT+AGG | - | chr4.1:18780429-18780448 | None:intergenic | 20.0% |
| !! | TAATATTTGACATACTTGTA+GGG | + | chr4.1:18781315-18781334 | MS.gene36447:intron | 20.0% |
| !!! | ATTTCATTGTTTAGTTTTGA+AGG | + | chr4.1:18781175-18781194 | MS.gene36447:intron | 20.0% |
| ! | AAGTAAATTCTTAAGTACTC+TGG | - | chr4.1:18780253-18780272 | None:intergenic | 25.0% |
| ! | AATATTTGACATACTTGTAG+GGG | + | chr4.1:18781316-18781335 | MS.gene36447:intron | 25.0% |
| ! | CAAAAGAAAAATGTAGAAAG+GGG | - | chr4.1:18780907-18780926 | None:intergenic | 25.0% |
| ! | CATTTATAACTCTTTCAGAT+TGG | + | chr4.1:18780658-18780677 | MS.gene36447:CDS | 25.0% |
| ! | GATGAAAATTTAATGTAGGT+AGG | - | chr4.1:18780425-18780444 | None:intergenic | 25.0% |
| ! | GATGAGATAATTAAAATGTC+TGG | - | chr4.1:18780189-18780208 | None:intergenic | 25.0% |
| ! | TAAATGAAACAAGATGCAAT+TGG | - | chr4.1:18780644-18780663 | None:intergenic | 25.0% |
| ! | TATACCAATTCAATTGATGT+TGG | + | chr4.1:18781245-18781264 | MS.gene36447:intron | 25.0% |
| ! | TGGTGAAGATTATGATAAAT+GGG | + | chr4.1:18780322-18780341 | MS.gene36447:CDS | 25.0% |
| ! | TGTTGTTACTGAAGAAAATA+AGG | - | chr4.1:18782117-18782136 | None:intergenic | 25.0% |
| ! | TTGGTGAAGATTATGATAAA+TGG | + | chr4.1:18780321-18780340 | MS.gene36447:CDS | 25.0% |
| ! | TTTCTACTTGAAATGATTAG+AGG | - | chr4.1:18781059-18781078 | None:intergenic | 25.0% |
| ! | TTTGAACATGGAAAAGAAAA+CGG | - | chr4.1:18780760-18780779 | None:intergenic | 25.0% |
| !! | ATTTTGCAAAAGTAACACAT+TGG | - | chr4.1:18781893-18781912 | None:intergenic | 25.0% |
| !! | GTATCTAAAACAAACTTCTA+AGG | - | chr4.1:18781224-18781243 | None:intergenic | 25.0% |
| !!! | TTAAGTACTTTGAAATCTTG+AGG | + | chr4.1:18781284-18781303 | MS.gene36447:intron | 25.0% |
| !!! | TTAGTTTTGAAGGAATGAAT+GGG | + | chr4.1:18781185-18781204 | MS.gene36447:intron | 25.0% |
| !!! | TTTAGTTTTGAAGGAATGAA+TGG | + | chr4.1:18781184-18781203 | MS.gene36447:intron | 25.0% |
| AAAACGGTGCAATAAGTATT+CGG | - | chr4.1:18780744-18780763 | None:intergenic | 30.0% | |
| AAATTTAATGTAGGTAGGGT+AGG | - | chr4.1:18780420-18780439 | None:intergenic | 30.0% | |
| AATGGTACTTCTGCAAAATA+AGG | - | chr4.1:18782314-18782333 | None:intergenic | 30.0% | |
| AATTTAATGTAGGTAGGGTA+GGG | - | chr4.1:18780419-18780438 | None:intergenic | 30.0% | |
| ACACATTATTACTTGCATCA+TGG | + | chr4.1:18781780-18781799 | MS.gene36447:CDS | 30.0% | |
| ACCCATATGGATAAATGAAA+CGG | - | chr4.1:18782030-18782049 | None:intergenic | 30.0% | |
| ATGTCATGTTCGAAAAAGAA+AGG | - | chr4.1:18782194-18782213 | None:intergenic | 30.0% | |
| ATGTTCAAACTAAGAGCTAT+TGG | + | chr4.1:18780771-18780790 | MS.gene36447:CDS | 30.0% | |
| CATATTAGTTGATCGAAAAC+TGG | + | chr4.1:18781962-18781981 | MS.gene36447:intron | 30.0% | |
| CATCATAAGATTCATAACTG+TGG | + | chr4.1:18781127-18781146 | MS.gene36447:intron | 30.0% | |
| CTGTTTATCTTTCACCAAAA+AGG | - | chr4.1:18782144-18782163 | None:intergenic | 30.0% | |
| GATACCAACATCAATTGAAT+TGG | - | chr4.1:18781252-18781271 | None:intergenic | 30.0% | |
| TAATGTGCCAAAAAATCTCA+AGG | + | chr4.1:18781815-18781834 | MS.gene36447:CDS | 30.0% | |
| TATGTCACAGTTATCTTTAG+AGG | - | chr4.1:18780974-18780993 | None:intergenic | 30.0% | |
| TCCGTTTCATTTATCCATAT+GGG | + | chr4.1:18782026-18782045 | MS.gene36447:intron | 30.0% | |
| TGGTAAGGTAAACTATACAA+TGG | - | chr4.1:18781934-18781953 | None:intergenic | 30.0% | |
| TGTCAATAGTTCTTCTATAG+AGG | - | chr4.1:18781600-18781619 | None:intergenic | 30.0% | |
| TGTTCAAACTAAGAGCTATT+GGG | + | chr4.1:18780772-18780791 | MS.gene36447:CDS | 30.0% | |
| TTCCGTTTCATTTATCCATA+TGG | + | chr4.1:18782025-18782044 | MS.gene36447:intron | 30.0% | |
| TTTCGATCAACTAATATGTC+TGG | - | chr4.1:18781960-18781979 | None:intergenic | 30.0% | |
| TTTCTTTCATAGCAGTATCT+TGG | + | chr4.1:18780379-18780398 | MS.gene36447:CDS | 30.0% | |
| ! | AATAGCTCTTAGTTTGAACA+TGG | - | chr4.1:18780772-18780791 | None:intergenic | 30.0% |
| ! | TGTGTCTTTCTTGTTTGATA+AGG | - | chr4.1:18781442-18781461 | None:intergenic | 30.0% |
| !!! | GCTTATACCTTGAGATTTTT+TGG | - | chr4.1:18781825-18781844 | None:intergenic | 30.0% |
| !!! | TTTTTTGGCACATTACTCTT+TGG | - | chr4.1:18781810-18781829 | None:intergenic | 30.0% |
| AAAAGTAACACATTGGAGCA+AGG | - | chr4.1:18781886-18781905 | None:intergenic | 35.0% | |
| AAGTCTGTTAGTATTAGACG+AGG | + | chr4.1:18781345-18781364 | MS.gene36447:intron | 35.0% | |
| AATGTCACAGTAGTAACTAG+TGG | - | chr4.1:18782002-18782021 | None:intergenic | 35.0% | |
| AATTGACAACACTATGTGAC+AGG | + | chr4.1:18780289-18780308 | MS.gene36447:intron | 35.0% | |
| ACAAGTCTTAAGCTATCCAT+AGG | - | chr4.1:18780842-18780861 | None:intergenic | 35.0% | |
| ACATTGCATTATCTTCTCCA+TGG | + | chr4.1:18780800-18780819 | MS.gene36447:CDS | 35.0% | |
| ACCATTTGAATCATCACTAC+AGG | + | chr4.1:18782328-18782347 | MS.gene36447:CDS | 35.0% | |
| ACGAGGAAGAAAGTAATGTT+AGG | + | chr4.1:18781362-18781381 | MS.gene36447:intron | 35.0% | |
| ACTTGTCAGTTGTCTTTCTA+AGG | - | chr4.1:18782280-18782299 | None:intergenic | 35.0% | |
| AGCTCCTACTAAGAATATGA+TGG | + | chr4.1:18782162-18782181 | MS.gene36447:intron | 35.0% | |
| ATACTGCTATGAAAGAAACG+AGG | - | chr4.1:18780377-18780396 | None:intergenic | 35.0% | |
| ATGGGTTCATCAACCTATTA+TGG | + | chr4.1:18780340-18780359 | MS.gene36447:CDS | 35.0% | |
| CAAGTCTTAAGCTATCCATA+GGG | - | chr4.1:18780841-18780860 | None:intergenic | 35.0% | |
| CACTTTCCCTTCTTAAAATG+TGG | + | chr4.1:18781844-18781863 | MS.gene36447:intron | 35.0% | |
| CATATGGGTCTCTTAAACTT+GGG | + | chr4.1:18782041-18782060 | MS.gene36447:intron | 35.0% | |
| CCATTTGAATCATCACTACA+GGG | + | chr4.1:18782329-18782348 | MS.gene36447:CDS | 35.0% | |
| CGAAACAAGACATGTATTTC+TGG | - | chr4.1:18781497-18781516 | None:intergenic | 35.0% | |
| CGAGGAAGAAAGTAATGTTA+GGG | + | chr4.1:18781363-18781382 | MS.gene36447:intron | 35.0% | |
| GATAAGGCTTATGAGTTGTA+TGG | - | chr4.1:18781426-18781445 | None:intergenic | 35.0% | |
| GCAATTGGAACCCAAATAAT+TGG | - | chr4.1:18780629-18780648 | None:intergenic | 35.0% | |
| GCAGTAAATGAGTAGTACAT+AGG | + | chr4.1:18781570-18781589 | MS.gene36447:intron | 35.0% | |
| GTACTTCTGCAAAATAAGGA+AGG | - | chr4.1:18782310-18782329 | None:intergenic | 35.0% | |
| GTGGGTGATTCCAATTATTT+GGG | + | chr4.1:18780616-18780635 | MS.gene36447:CDS | 35.0% | |
| GTTCAAACTAAGAGCTATTG+GGG | + | chr4.1:18780773-18780792 | MS.gene36447:CDS | 35.0% | |
| TAACTGTGACATAGTTTCTC+TGG | + | chr4.1:18780981-18781000 | MS.gene36447:intron | 35.0% | |
| TACCATGTAGGCTATTAAAG+CGG | - | chr4.1:18780882-18780901 | None:intergenic | 35.0% | |
| TACTGCTATGAAAGAAACGA+GGG | - | chr4.1:18780376-18780395 | None:intergenic | 35.0% | |
| TGATGTTGGTATCAGAAGTA+CGG | + | chr4.1:18781259-18781278 | MS.gene36447:intron | 35.0% | |
| TGCACCATCATATTCTTAGT+AGG | - | chr4.1:18782169-18782188 | None:intergenic | 35.0% | |
| TGGGTTCATCAACCTATTAT+GGG | + | chr4.1:18780341-18780360 | MS.gene36447:CDS | 35.0% | |
| TGTATGGTAGCAATACATGA+AGG | - | chr4.1:18781410-18781429 | None:intergenic | 35.0% | |
| TTGAAGGAATGAATGGGAAT+GGG | + | chr4.1:18781191-18781210 | MS.gene36447:intron | 35.0% | |
| TTTGAAGGAATGAATGGGAA+TGG | + | chr4.1:18781190-18781209 | MS.gene36447:intron | 35.0% | |
| ! | AAGATTTGTGTTGTTGGAAC+AGG | + | chr4.1:18780574-18780593 | MS.gene36447:intron | 35.0% |
| ! | AGTAACAACAGTGACCTTTT+TGG | + | chr4.1:18782127-18782146 | MS.gene36447:intron | 35.0% |
| ! | GAATTGTGTTTAGAGGGTTT+TGG | + | chr4.1:18780510-18780529 | MS.gene36447:intron | 35.0% |
| ! | TCAACTAATATGTCTGGCTT+TGG | - | chr4.1:18781954-18781973 | None:intergenic | 35.0% |
| ! | TGTGGTGTTAGTGTAAATGA+TGG | + | chr4.1:18781145-18781164 | MS.gene36447:intron | 35.0% |
| !! | ATGGGATAAGGTTTTTGGAA+CGG | + | chr4.1:18782386-18782405 | MS.gene36447:CDS | 35.0% |
| !! | GTATTTCTGGCTAGTTGAAA+CGG | - | chr4.1:18781484-18781503 | None:intergenic | 35.0% |
| !! | TAATATGTCTGGCTTTGGTA+AGG | - | chr4.1:18781949-18781968 | None:intergenic | 35.0% |
| !! | TCTCTGGAATTGTGTTTAGA+GGG | + | chr4.1:18780504-18780523 | MS.gene36447:intron | 35.0% |
| !! | TGTCGTCCACATTTTAAGAA+GGG | - | chr4.1:18781853-18781872 | None:intergenic | 35.0% |
| !! | TTCTTAAGTACTCTGGAGTT+TGG | - | chr4.1:18780246-18780265 | None:intergenic | 35.0% |
| !! | TTGTCGTCCACATTTTAAGA+AGG | - | chr4.1:18781854-18781873 | None:intergenic | 35.0% |
| AATGTTAGGGTCAAATGCAG+AGG | + | chr4.1:18781376-18781395 | MS.gene36447:intron | 40.0% | |
| AGTTGGTTACCTGACAAACA+AGG | - | chr4.1:18780079-18780098 | None:intergenic | 40.0% | |
| CCAAAAACCTTATCCCATAG+TGG | - | chr4.1:18782384-18782403 | None:intergenic | 40.0% | |
| CCAAGTTTAAGAGACCCATA+TGG | - | chr4.1:18782043-18782062 | None:intergenic | 40.0% | |
| CCATATGGGTCTCTTAAACT+TGG | + | chr4.1:18782040-18782059 | MS.gene36447:intron | 40.0% | |
| CCCTGTAGTGATGATTCAAA+TGG | - | chr4.1:18782332-18782351 | None:intergenic | 40.0% | |
| CTTTCATAGCAGTATCTTGG+AGG | + | chr4.1:18780382-18780401 | MS.gene36447:CDS | 40.0% | |
| GGTGGGTGATTCCAATTATT+TGG | + | chr4.1:18780615-18780634 | MS.gene36447:CDS | 40.0% | |
| GTTGGTTACCTGACAAACAA+GGG | - | chr4.1:18780078-18780097 | None:intergenic | 40.0% | |
| TAATCCTATTCGAGTCGTGT+CGG | + | chr4.1:18780137-18780156 | MS.gene36447:intron | 40.0% | |
| TCATCAACCTATTATGGGCA+AGG | + | chr4.1:18780346-18780365 | MS.gene36447:CDS | 40.0% | |
| TTGGTTACCTGACAAACAAG+GGG | - | chr4.1:18780077-18780096 | None:intergenic | 40.0% | |
| ! | CCACTATGGGATAAGGTTTT+TGG | + | chr4.1:18782381-18782400 | MS.gene36447:CDS | 40.0% |
| ! | GAATAAACCCCTTGTTTGTC+AGG | + | chr4.1:18780067-18780086 | MS.gene36447:CDS | 40.0% |
| ! | TAGAAAGGGGTATACCATGT+AGG | - | chr4.1:18780894-18780913 | None:intergenic | 40.0% |
| ! | TCTGGAGTTTGGTTGAGTAT+CGG | - | chr4.1:18780235-18780254 | None:intergenic | 40.0% |
| ! | TGCTACTCGGCATTTTTGTA+TGG | + | chr4.1:18780711-18780730 | MS.gene36447:CDS | 40.0% |
| !! | CGACTCAAAAGATTAGTCTC+TGG | + | chr4.1:18780488-18780507 | MS.gene36447:intron | 40.0% |
| !! | GTCTCTGGAATTGTGTTTAG+AGG | + | chr4.1:18780503-18780522 | MS.gene36447:intron | 40.0% |
| !!! | GTGTTTGGAGGCATTTTGTT+GGG | + | chr4.1:18781738-18781757 | MS.gene36447:CDS | 40.0% |
| !!! | TGTGTTTGGAGGCATTTTGT+TGG | + | chr4.1:18781737-18781756 | MS.gene36447:CDS | 40.0% |
| AAAATGCCTCCAAACACAGC+AGG | - | chr4.1:18781735-18781754 | None:intergenic | 45.0% | |
| AACACAGCAGGAGCAATTGA+AGG | - | chr4.1:18781723-18781742 | None:intergenic | 45.0% | |
| AATGTAGGTAGGGTAGGGTA+GGG | - | chr4.1:18780414-18780433 | None:intergenic | 45.0% | |
| AGGGAATACAAGCTTCACTG+AGG | - | chr4.1:18781700-18781719 | None:intergenic | 45.0% | |
| CAACCTATTATGGGCAAGGA+AGG | + | chr4.1:18780350-18780369 | MS.gene36447:CDS | 45.0% | |
| CACTTCACCACTATGGGATA+AGG | + | chr4.1:18782374-18782393 | MS.gene36447:CDS | 45.0% | |
| GACAACACTATGTGACAGGT+TGG | + | chr4.1:18780293-18780312 | MS.gene36447:intron | 45.0% | |
| TAATGTAGGTAGGGTAGGGT+AGG | - | chr4.1:18780415-18780434 | None:intergenic | 45.0% | |
| TAGGGTCAAATGCAGAGGTT+AGG | + | chr4.1:18781381-18781400 | MS.gene36447:intron | 45.0% | |
| TCAATTGCTCCTGCTGTGTT+TGG | + | chr4.1:18781723-18781742 | MS.gene36447:CDS | 45.0% | |
| TGGCATCACTTCACCACTAT+GGG | + | chr4.1:18782368-18782387 | MS.gene36447:CDS | 45.0% | |
| TTGGCATCACTTCACCACTA+TGG | + | chr4.1:18782367-18782386 | MS.gene36447:CDS | 45.0% | |
| ! | AGCCGCTTTAATAGCCTACA+TGG | + | chr4.1:18780877-18780896 | MS.gene36447:CDS | 45.0% |
| ! | AGCTATCCATAGGGTGCTTA+TGG | - | chr4.1:18780832-18780851 | None:intergenic | 45.0% |
| ! | TATCCATAGGGTGCTTATGG+TGG | - | chr4.1:18780829-18780848 | None:intergenic | 45.0% |
| !! | AGACTTGTTTTTCCACCAGC+TGG | + | chr4.1:18780854-18780873 | MS.gene36447:CDS | 45.0% |
| !! | ATGTGACAGGTTGGTCATCT+TGG | + | chr4.1:18780302-18780321 | MS.gene36447:intron | 45.0% |
| !! | CGTTTGGCATCCACTTTTGA+TGG | - | chr4.1:18782420-18782439 | None:intergenic | 45.0% |
| !! | TTGGCATCCACTTTTGATGG+AGG | - | chr4.1:18782417-18782436 | None:intergenic | 45.0% |
| AAAAGAGGGAGGTGAGGAAC+AGG | - | chr4.1:18780689-18780708 | None:intergenic | 50.0% | |
| AAAGAGGGAGGTGAGGAACA+GGG | - | chr4.1:18780688-18780707 | None:intergenic | 50.0% | |
| ACAGCAGGAGCAATTGAAGG+AGG | - | chr4.1:18781720-18781739 | None:intergenic | 50.0% | |
| ATGCCGAGTAGCACGAAAAG+AGG | - | chr4.1:18780704-18780723 | None:intergenic | 50.0% | |
| ATTGCTCCTGCTGTGTTTGG+AGG | + | chr4.1:18781726-18781745 | MS.gene36447:CDS | 50.0% | |
| CAGCAGGAGCAATTGAAGGA+GGG | - | chr4.1:18781719-18781738 | None:intergenic | 50.0% | |
| GGTTCCTCCTCCATCAAAAG+TGG | + | chr4.1:18782407-18782426 | MS.gene36447:CDS | 50.0% | |
| GTGAAGTGATGCCAAAGCCA+AGG | - | chr4.1:18782362-18782381 | None:intergenic | 50.0% | |
| TGCCGAGTAGCACGAAAAGA+GGG | - | chr4.1:18780703-18780722 | None:intergenic | 50.0% | |
| TTGCCACCATAAGCACCCTA+TGG | + | chr4.1:18780823-18780842 | MS.gene36447:CDS | 50.0% | |
| TTGTCTGCAACGTCCAGATC+TGG | + | chr4.1:18781673-18781692 | MS.gene36447:intron | 50.0% | |
| TTTCACGCGAACTGCTTGGT+GGG | + | chr4.1:18780598-18780617 | MS.gene36447:CDS | 50.0% | |
| ! | AGGTTTTCACGCGAACTGCT+TGG | + | chr4.1:18780594-18780613 | MS.gene36447:intron | 50.0% |
| ! | TTTTCACGCGAACTGCTTGG+TGG | + | chr4.1:18780597-18780616 | MS.gene36447:CDS | 50.0% |
| !! | CTCCCTCTTTTCGTGCTACT+CGG | + | chr4.1:18780698-18780717 | MS.gene36447:CDS | 50.0% |
| !! | GCATCCACTTTTGATGGAGG+AGG | - | chr4.1:18782414-18782433 | None:intergenic | 50.0% |
| AGCACGAAAAGAGGGAGGTG+AGG | - | chr4.1:18780695-18780714 | None:intergenic | 55.0% | |
| ATTAAAGCGGCTCCAGCTGG+TGG | - | chr4.1:18780869-18780888 | None:intergenic | 55.0% | |
| CGAGTAGCACGAAAAGAGGG+AGG | - | chr4.1:18780700-18780719 | None:intergenic | 55.0% | |
| GCTATTAAAGCGGCTCCAGC+TGG | - | chr4.1:18780872-18780891 | None:intergenic | 55.0% | |
| GCTTCACTGAGGACCAGATC+TGG | - | chr4.1:18781689-18781708 | None:intergenic | 55.0% | |
| GGGCCTTCCTTGCCCATAAT+AGG | - | chr4.1:18780356-18780375 | None:intergenic | 55.0% | |
| GGTGCTTATGGTGGCAACCA+TGG | - | chr4.1:18780820-18780839 | None:intergenic | 55.0% | |
| GTGTCCGACACGACTCGAAT+AGG | - | chr4.1:18780144-18780163 | None:intergenic | 55.0% | |
| TAGGTAGGGTAGGGTAGGGT+AGG | - | chr4.1:18780410-18780429 | None:intergenic | 55.0% | |
| TGATGCCAAAGCCAAGGCTC+TGG | - | chr4.1:18782356-18782375 | None:intergenic | 55.0% | |
| AGGGTCCAGAGCCTTGGCTT+TGG | + | chr4.1:18782348-18782367 | MS.gene36447:CDS | 60.0% | |
| CACTACAGGGTCCAGAGCCT+TGG | + | chr4.1:18782342-18782361 | MS.gene36447:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 18780038 | 18782446 | 18780038 | ID=MS.gene36447 |
| chr4.1 | mRNA | 18780038 | 18782446 | 18780038 | ID=MS.gene36447.t1;Parent=MS.gene36447 |
| chr4.1 | exon | 18780038 | 18780088 | 18780038 | ID=MS.gene36447.t1.exon1;Parent=MS.gene36447.t1 |
| chr4.1 | CDS | 18780038 | 18780088 | 18780038 | ID=cds.MS.gene36447.t1;Parent=MS.gene36447.t1 |
| chr4.1 | exon | 18780311 | 18780403 | 18780311 | ID=MS.gene36447.t1.exon2;Parent=MS.gene36447.t1 |
| chr4.1 | CDS | 18780311 | 18780403 | 18780311 | ID=cds.MS.gene36447.t1;Parent=MS.gene36447.t1 |
| chr4.1 | exon | 18780596 | 18780898 | 18780596 | ID=MS.gene36447.t1.exon3;Parent=MS.gene36447.t1 |
| chr4.1 | CDS | 18780596 | 18780898 | 18780596 | ID=cds.MS.gene36447.t1;Parent=MS.gene36447.t1 |
| chr4.1 | exon | 18781690 | 18781836 | 18781690 | ID=MS.gene36447.t1.exon4;Parent=MS.gene36447.t1 |
| chr4.1 | CDS | 18781690 | 18781836 | 18781690 | ID=cds.MS.gene36447.t1;Parent=MS.gene36447.t1 |
| chr4.1 | exon | 18782324 | 18782446 | 18782324 | ID=MS.gene36447.t1.exon5;Parent=MS.gene36447.t1 |
| chr4.1 | CDS | 18782324 | 18782446 | 18782324 | ID=cds.MS.gene36447.t1;Parent=MS.gene36447.t1 |
| Gene Sequence |
| Protein sequence |
