Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37470.t1 | XP_013461799.1 | 96 | 349 | 14 | 0 | 1 | 349 | 101 | 449 | 1.20E-195 | 692.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37470.t1 | Q9FZI8 | 62.8 | 333 | 115 | 3 | 1 | 331 | 96 | 421 | 2.6e-117 | 423.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37470.t1 | A0A072V1F9 | 96.0 | 349 | 14 | 0 | 1 | 349 | 101 | 449 | 9.0e-196 | 692.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene37470 | 0.811533 | 6.68E-51 | -1.69E-46 |
| MS.gene049369 | MS.gene37470 | 0.836981 | 6.80E-57 | -1.69E-46 |
| MS.gene049396 | MS.gene37470 | 0.848499 | 5.90E-60 | -1.69E-46 |
| MS.gene050502 | MS.gene37470 | 0.808446 | 3.08E-50 | -1.69E-46 |
| MS.gene053449 | MS.gene37470 | 0.830683 | 2.56E-55 | -1.69E-46 |
| MS.gene053912 | MS.gene37470 | 0.804859 | 1.76E-49 | -1.69E-46 |
| MS.gene054181 | MS.gene37470 | -0.800945 | 1.14E-48 | -1.69E-46 |
| MS.gene054486 | MS.gene37470 | 0.800919 | 1.15E-48 | -1.69E-46 |
| MS.gene05505 | MS.gene37470 | 0.808655 | 2.78E-50 | -1.69E-46 |
| MS.gene055744 | MS.gene37470 | 0.800201 | 1.61E-48 | -1.69E-46 |
| MS.gene055909 | MS.gene37470 | 0.829614 | 4.66E-55 | -1.69E-46 |
| MS.gene055911 | MS.gene37470 | 0.832426 | 9.52E-56 | -1.69E-46 |
| MS.gene056422 | MS.gene37470 | 0.857295 | 1.80E-62 | -1.69E-46 |
| MS.gene056511 | MS.gene37470 | 0.832566 | 8.79E-56 | -1.69E-46 |
| MS.gene057086 | MS.gene37470 | 0.812853 | 3.44E-51 | -1.69E-46 |
| MS.gene057927 | MS.gene37470 | 0.813974 | 1.95E-51 | -1.69E-46 |
| MS.gene058075 | MS.gene37470 | 0.86287 | 3.73E-64 | -1.69E-46 |
| MS.gene058928 | MS.gene37470 | 0.837378 | 5.38E-57 | -1.69E-46 |
| MS.gene059367 | MS.gene37470 | 0.804148 | 2.48E-49 | -1.69E-46 |
| MS.gene059368 | MS.gene37470 | 0.812354 | 4.42E-51 | -1.69E-46 |
| MS.gene059402 | MS.gene37470 | -0.811968 | 5.37E-51 | -1.69E-46 |
| MS.gene059674 | MS.gene37470 | 0.830835 | 2.35E-55 | -1.69E-46 |
| MS.gene059807 | MS.gene37470 | 0.888061 | 8.24E-73 | -1.69E-46 |
| MS.gene060372 | MS.gene37470 | 0.804051 | 2.60E-49 | -1.69E-46 |
| MS.gene06097 | MS.gene37470 | 0.838858 | 2.24E-57 | -1.69E-46 |
| MS.gene061041 | MS.gene37470 | 0.827296 | 1.69E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37470.t1 | MTR_3g103300 | 95.989 | 349 | 14 | 0 | 1 | 349 | 101 | 449 | 0.0 | 688 |
| MS.gene37470.t1 | MTR_2g075650 | 95.918 | 49 | 2 | 0 | 75 | 123 | 25 | 73 | 2.89e-25 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37470.t1 | AT1G27480 | 62.763 | 333 | 115 | 3 | 1 | 331 | 96 | 421 | 3.28e-146 | 420 |
Find 69 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAGGTCGTTTAGGAATT+TGG | 0.093532 | 3.4:-90937875 | None:intergenic |
| AAGAAGAAGGGTTTCGATTA+AGG | 0.254545 | 3.4:-90937987 | None:intergenic |
| GTTGCACTTGATGAAATAAT+TGG | 0.291740 | 3.4:+90938573 | MS.gene37470:CDS |
| TTAATCGAAACCCTTCTTCT+TGG | 0.309291 | 3.4:+90937989 | MS.gene37470:CDS |
| TCAAATTCTTTAGGTCGTTT+AGG | 0.309491 | 3.4:-90937882 | None:intergenic |
| TTATCAATATCAAATATCTT+AGG | 0.316150 | 3.4:-90938183 | None:intergenic |
| TGTTGGCACTTGAATCTCTA+TGG | 0.323866 | 3.4:+90938475 | MS.gene37470:CDS |
| CTCATGCTCAACTTGATTTG+AGG | 0.335869 | 3.4:+90938616 | MS.gene37470:CDS |
| TGCGCTAAATAGCTTCTATA+TGG | 0.354848 | 3.4:-90938222 | None:intergenic |
| CTGTGTGAGACAAGTATTAC+TGG | 0.359637 | 3.4:-90937937 | None:intergenic |
| GTGCGTATGACTTGTATTAT+AGG | 0.376436 | 3.4:+90938345 | MS.gene37470:CDS |
| AAGCTATTTAGCGCATGATA+TGG | 0.385056 | 3.4:+90938230 | MS.gene37470:CDS |
| TTTGCATCAGGCAATACTTT+GGG | 0.393921 | 3.4:+90938084 | MS.gene37470:CDS |
| GAACAGCTTGGTTACATAGA+TGG | 0.397233 | 3.4:+90937778 | MS.gene37470:CDS |
| TAGACCATATCGAAAATCAT+AGG | 0.397497 | 3.4:-90937821 | None:intergenic |
| TACTTGAAAGTTATTAAGAT+TGG | 0.398069 | 3.4:+90938516 | MS.gene37470:CDS |
| ATAGATGGTGAAAATCTGTT+TGG | 0.403610 | 3.4:+90937793 | MS.gene37470:CDS |
| TTATAGCACTTTCTGCTCCA+TGG | 0.410868 | 3.4:+90938034 | MS.gene37470:CDS |
| ATATCAAATATCTTAGGATT+AGG | 0.419667 | 3.4:-90938177 | None:intergenic |
| ACTAGCAAAGGGTTTACTAA+TGG | 0.433212 | 3.4:-90938111 | None:intergenic |
| GAGACACGTGTCCCTAGCTT+TGG | 0.437492 | 3.4:+90936494 | MS.gene37470:CDS |
| TATAGCACTTTCTGCTCCAT+GGG | 0.439917 | 3.4:+90938035 | MS.gene37470:CDS |
| TATTACTGGCTTCCCTCCAT+TGG | 0.440820 | 3.4:-90937923 | None:intergenic |
| CTGTTCTAATGATTCTACTA+AGG | 0.448413 | 3.4:-90937761 | None:intergenic |
| GGTAAAATGCGAGTTTCATA+AGG | 0.448911 | 3.4:-90938294 | None:intergenic |
| TTCCTATAAAACAATTCCTC+TGG | 0.453117 | 3.4:-90938384 | None:intergenic |
| AATTTCTTGCGCCAAGAAGA+AGG | 0.458486 | 3.4:-90938000 | None:intergenic |
| GTTCATTTCTTACTAGCAAA+GGG | 0.458490 | 3.4:-90938122 | None:intergenic |
| ATACAAGTCATACGCACTTC+CGG | 0.459063 | 3.4:-90938339 | None:intergenic |
| TGAAAGTTATTAAGATTGGT+GGG | 0.480822 | 3.4:+90938520 | MS.gene37470:CDS |
| TGTTCATTTCTTACTAGCAA+AGG | 0.481119 | 3.4:-90938123 | None:intergenic |
| TTGAAAGTTATTAAGATTGG+TGG | 0.484679 | 3.4:+90938519 | MS.gene37470:CDS |
| TACTTGTGTAGGCTTGTCAC+AGG | 0.491877 | 3.4:+90937727 | MS.gene37470:intron |
| ATACTTGTCTCACACAGCTT+AGG | 0.493585 | 3.4:+90937943 | MS.gene37470:CDS |
| CTTGTCTCACACAGCTTAGG+AGG | 0.497176 | 3.4:+90937946 | MS.gene37470:CDS |
| GAGGAAGTAGAACCAAAGCT+AGG | 0.502927 | 3.4:-90936506 | None:intergenic |
| GTAGAATCATTAGAACAGCT+TGG | 0.503633 | 3.4:+90937766 | MS.gene37470:CDS |
| AATTTGGAACCAACTTGAGA+TGG | 0.518350 | 3.4:-90937859 | None:intergenic |
| TGTGAACATGGTGAGCTTGT+TGG | 0.520209 | 3.4:+90938458 | MS.gene37470:CDS |
| CCATCACCATAAGAAAACTC+TGG | 0.520727 | 3.4:-90938426 | None:intergenic |
| CGATATGGTCTAGCTGCACC+AGG | 0.525375 | 3.4:+90937832 | MS.gene37470:CDS |
| ATGACTTGTATTATAGGAAA+GGG | 0.531822 | 3.4:+90938351 | MS.gene37470:CDS |
| GGGACACGTGTCTCCACTCC+AGG | 0.536426 | 3.4:-90936485 | None:intergenic |
| CATCACCATAAGAAAACTCT+GGG | 0.540159 | 3.4:-90938425 | None:intergenic |
| ATTTGGAACCAACTTGAGAT+GGG | 0.545508 | 3.4:-90937858 | None:intergenic |
| ATTTCTTGCGCCAAGAAGAA+GGG | 0.548066 | 3.4:-90937999 | None:intergenic |
| TATGACTTGTATTATAGGAA+AGG | 0.548615 | 3.4:+90938350 | MS.gene37470:CDS |
| TAGGATTAGGCAAAAGCCAT+AGG | 0.550005 | 3.4:-90938164 | None:intergenic |
| TAGGCTTGTCACAGGGTACA+TGG | 0.553390 | 3.4:+90937735 | MS.gene37470:intron |
| TCATCAACAGTTCCACCCCA+TGG | 0.553701 | 3.4:-90938051 | None:intergenic |
| GATAGCGAAAATAGATGCAC+CGG | 0.558129 | 3.4:+90938320 | MS.gene37470:CDS |
| GAAAGTTATTAAGATTGGTG+GGG | 0.564534 | 3.4:+90938521 | MS.gene37470:CDS |
| TGTTCTAATGATTCTACTAA+GGG | 0.567395 | 3.4:-90937760 | None:intergenic |
| GCACTTTCTGCTCCATGGGG+TGG | 0.574507 | 3.4:+90938039 | MS.gene37470:CDS |
| AGGAAGTAGAACCAAAGCTA+GGG | 0.574724 | 3.4:-90936505 | None:intergenic |
| AGACCATATCGAAAATCATA+GGG | 0.574772 | 3.4:-90937820 | None:intergenic |
| AGGATTAAGATAAAGAAGAG+AGG | 0.580569 | 3.4:-90936525 | None:intergenic |
| GAACTTCTGAGAGTAACCTA+TGG | 0.593616 | 3.4:+90938148 | MS.gene37470:CDS |
| CCAACTTGAGATGGGTGACC+TGG | 0.599702 | 3.4:-90937850 | None:intergenic |
| AAAGCAAGCAATTCCAATGG+AGG | 0.603247 | 3.4:+90937910 | MS.gene37470:CDS |
| CCAGGTCACCCATCTCAAGT+TGG | 0.608401 | 3.4:+90937850 | MS.gene37470:CDS |
| TGGTGACGGAACTGTGAACA+TGG | 0.612065 | 3.4:+90938446 | MS.gene37470:CDS |
| ACTTGTGTAGGCTTGTCACA+GGG | 0.624634 | 3.4:+90937728 | MS.gene37470:intron |
| AAGCAAGCAATTCCAATGGA+GGG | 0.626020 | 3.4:+90937911 | MS.gene37470:CDS |
| ATAGCACTTTCTGCTCCATG+GGG | 0.637994 | 3.4:+90938036 | MS.gene37470:CDS |
| AAATAAACTTACTTAAGACG+AGG | 0.677738 | 3.4:-90936545 | None:intergenic |
| TCACCATAAGAAAACTCTGG+GGG | 0.705714 | 3.4:-90938423 | None:intergenic |
| AAAGGGTGTGAAGACTCCAG+AGG | 0.728760 | 3.4:+90938368 | MS.gene37470:CDS |
| ATCACCATAAGAAAACTCTG+GGG | 0.774332 | 3.4:-90938424 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATCTTTCAATTATTATAT+GGG | + | chr3.4:90937299-90937318 | MS.gene37470:intron | 10.0% |
| !! | TTCTATAAAAAGTTATTATA+TGG | + | chr3.4:90937680-90937699 | MS.gene37470:intron | 10.0% |
| !! | TTTATCTTTCAATTATTATA+TGG | + | chr3.4:90937298-90937317 | MS.gene37470:intron | 10.0% |
| !! | GGAAATAAAACAAAATATAA+AGG | - | chr3.4:90936588-90936607 | None:intergenic | 15.0% |
| !! | TTATCAATATCAAATATCTT+AGG | - | chr3.4:90938186-90938205 | None:intergenic | 15.0% |
| !! | AACATTACTGTATTATTGTA+AGG | - | chr3.4:90937708-90937727 | None:intergenic | 20.0% |
| !! | ATATCAAATATCTTAGGATT+AGG | - | chr3.4:90938180-90938199 | None:intergenic | 20.0% |
| !! | ATTAAAGTTTCACTAAATCA+AGG | - | chr3.4:90936699-90936718 | None:intergenic | 20.0% |
| !! | TACTTGAAAGTTATTAAGAT+TGG | + | chr3.4:90938516-90938535 | MS.gene37470:CDS | 20.0% |
| !! | TTTACATCTATATAAAGCTA+CGG | + | chr3.4:90937536-90937555 | MS.gene37470:intron | 20.0% |
| !!! | AAAAGTGTCTTTTTTTTCTT+TGG | - | chr3.4:90937518-90937537 | None:intergenic | 20.0% |
| !!! | ATTCATGTTTGTCTTTTTTT+AGG | + | chr3.4:90936875-90936894 | MS.gene37470:intron | 20.0% |
| !!! | ATTTTTTTTTTGGTGTTAAC+CGG | - | chr3.4:90937103-90937122 | None:intergenic | 20.0% |
| !!! | CTTTTTCTATCAAATTCTTT+AGG | - | chr3.4:90937894-90937913 | None:intergenic | 20.0% |
| !!! | GTTGATTTTCTTAAAGATAT+TGG | + | chr3.4:90938252-90938271 | MS.gene37470:CDS | 20.0% |
| ! | AAAAGATTTAACATTGCTCA+TGG | - | chr3.4:90937009-90937028 | None:intergenic | 25.0% |
| ! | AAATAAACTTACTTAAGACG+AGG | - | chr3.4:90936548-90936567 | None:intergenic | 25.0% |
| ! | ATATTATCAAATTAGTCCGA+AGG | - | chr3.4:90936913-90936932 | None:intergenic | 25.0% |
| ! | CTTTCAATTATTATATGGGA+AGG | + | chr3.4:90937303-90937322 | MS.gene37470:intron | 25.0% |
| ! | GACGAGAAATTATAAATTGT+TGG | - | chr3.4:90937169-90937188 | None:intergenic | 25.0% |
| ! | GTGCATTAAAAAAATCATCA+AGG | - | chr3.4:90936466-90936485 | None:intergenic | 25.0% |
| ! | TGAAAGTTATTAAGATTGGT+GGG | + | chr3.4:90938520-90938539 | MS.gene37470:CDS | 25.0% |
| ! | TGTTCTAATGATTCTACTAA+GGG | - | chr3.4:90937763-90937782 | None:intergenic | 25.0% |
| ! | TTGAAAGTTATTAAGATTGG+TGG | + | chr3.4:90938519-90938538 | MS.gene37470:CDS | 25.0% |
| !! | ATGACTTGTATTATAGGAAA+GGG | + | chr3.4:90938351-90938370 | MS.gene37470:CDS | 25.0% |
| !! | ATGAGCAATGTTAAATCTTT+TGG | + | chr3.4:90937008-90937027 | MS.gene37470:intron | 25.0% |
| !! | CTTTTCTAGATAGATTGAAT+CGG | + | chr3.4:90937368-90937387 | MS.gene37470:intron | 25.0% |
| !! | TATGACTTGTATTATAGGAA+AGG | + | chr3.4:90938350-90938369 | MS.gene37470:CDS | 25.0% |
| !! | TGAGCAATGTTAAATCTTTT+GGG | + | chr3.4:90937009-90937028 | MS.gene37470:intron | 25.0% |
| !!! | ATCTAGAAAAGTGTTCATAT+AGG | - | chr3.4:90937359-90937378 | None:intergenic | 25.0% |
| !!! | TTATTTCCTGTACTTTGTTT+TGG | + | chr3.4:90936600-90936619 | MS.gene37470:intron | 25.0% |
| !!! | TTTTTTTTTTGGTGTTAACC+GGG | - | chr3.4:90937102-90937121 | None:intergenic | 25.0% |
| AAACTTCCAAAACAAAGTAC+AGG | - | chr3.4:90936609-90936628 | None:intergenic | 30.0% | |
| AGACCATATCGAAAATCATA+GGG | - | chr3.4:90937823-90937842 | None:intergenic | 30.0% | |
| AGGATTAAGATAAAGAAGAG+AGG | - | chr3.4:90936528-90936547 | None:intergenic | 30.0% | |
| ATAATAACTAGAGCTCATGA+TGG | - | chr3.4:90936782-90936801 | None:intergenic | 30.0% | |
| ATAGATGGTGAAAATCTGTT+TGG | + | chr3.4:90937793-90937812 | MS.gene37470:CDS | 30.0% | |
| CATTATGAGATCATCCAATT+TGG | + | chr3.4:90936659-90936678 | MS.gene37470:intron | 30.0% | |
| CTGTTCTAATGATTCTACTA+AGG | - | chr3.4:90937764-90937783 | None:intergenic | 30.0% | |
| GAAAGTTATTAAGATTGGTG+GGG | + | chr3.4:90938521-90938540 | MS.gene37470:CDS | 30.0% | |
| GTTAGAACCTTGAAATTGTA+GGG | - | chr3.4:90937225-90937244 | None:intergenic | 30.0% | |
| GTTCATTTCTTACTAGCAAA+GGG | - | chr3.4:90938125-90938144 | None:intergenic | 30.0% | |
| GTTGCACTTGATGAAATAAT+TGG | + | chr3.4:90938573-90938592 | MS.gene37470:CDS | 30.0% | |
| TAATTTCTCGTCAATTTCGT+AGG | + | chr3.4:90937177-90937196 | MS.gene37470:intron | 30.0% | |
| TAGACCATATCGAAAATCAT+AGG | - | chr3.4:90937824-90937843 | None:intergenic | 30.0% | |
| TCAAATTCTTTAGGTCGTTT+AGG | - | chr3.4:90937885-90937904 | None:intergenic | 30.0% | |
| TGCTAAAAGACTATACTGTT+TGG | + | chr3.4:90937133-90937152 | MS.gene37470:intron | 30.0% | |
| TGTATTAATCAGTGTTCTCA+TGG | + | chr3.4:90937623-90937642 | MS.gene37470:intron | 30.0% | |
| TGTTCATTTCTTACTAGCAA+AGG | - | chr3.4:90938126-90938145 | None:intergenic | 30.0% | |
| TTAGAACCTTGAAATTGTAG+GGG | - | chr3.4:90937224-90937243 | None:intergenic | 30.0% | |
| TTCCTATAAAACAATTCCTC+TGG | - | chr3.4:90938387-90938406 | None:intergenic | 30.0% | |
| ! | AGCAATGTTAAATCTTTTGG+GGG | + | chr3.4:90937011-90937030 | MS.gene37470:intron | 30.0% |
| ! | GAGCAATGTTAAATCTTTTG+GGG | + | chr3.4:90937010-90937029 | MS.gene37470:intron | 30.0% |
| ! | TACAGTAATGTTACTTGTGT+AGG | + | chr3.4:90937716-90937735 | MS.gene37470:intron | 30.0% |
| ! | TAGGCTAAGTTTTTAACCTT+CGG | + | chr3.4:90936894-90936913 | MS.gene37470:intron | 30.0% |
| !! | GAAATGTTTACTTTTGCATC+AGG | + | chr3.4:90938072-90938091 | MS.gene37470:CDS | 30.0% |
| !! | GAGGAATTGTTTTATAGGAA+TGG | + | chr3.4:90938387-90938406 | MS.gene37470:CDS | 30.0% |
| !!! | AAAGATATTGGTTTTCCTGA+GGG | + | chr3.4:90938264-90938283 | MS.gene37470:CDS | 30.0% |
| !!! | AGTGTCTTTTTTTTCTTTGG+TGG | - | chr3.4:90937515-90937534 | None:intergenic | 30.0% |
| !!! | GATGATTTTTTTAATGCACC+TGG | + | chr3.4:90936467-90936486 | MS.gene37470:CDS | 30.0% |
| !!! | TAAAGATATTGGTTTTCCTG+AGG | + | chr3.4:90938263-90938282 | MS.gene37470:CDS | 30.0% |
| AAGAAGAAGGGTTTCGATTA+AGG | - | chr3.4:90937990-90938009 | None:intergenic | 35.0% | |
| AAGCTATTTAGCGCATGATA+TGG | + | chr3.4:90938230-90938249 | MS.gene37470:CDS | 35.0% | |
| ACAATACCCCTACAATTTCA+AGG | + | chr3.4:90937215-90937234 | MS.gene37470:intron | 35.0% | |
| ACTAGCAAAGGGTTTACTAA+TGG | - | chr3.4:90938114-90938133 | None:intergenic | 35.0% | |
| AGATCATCCAATTTGGTTGT+GGG | + | chr3.4:90936666-90936685 | MS.gene37470:intron | 35.0% | |
| ATCACCATAAGAAAACTCTG+GGG | - | chr3.4:90938427-90938446 | None:intergenic | 35.0% | |
| ATTAATCAGTGTTCTCATGG+CGG | + | chr3.4:90937626-90937645 | MS.gene37470:intron | 35.0% | |
| CATCACCATAAGAAAACTCT+GGG | - | chr3.4:90938428-90938447 | None:intergenic | 35.0% | |
| CTTTAGGTCGTTTAGGAATT+TGG | - | chr3.4:90937878-90937897 | None:intergenic | 35.0% | |
| GAAAAAGCAAGCAATTCCAA+TGG | + | chr3.4:90937907-90937926 | MS.gene37470:CDS | 35.0% | |
| GACAGTGCATAAAATATGCA+AGG | + | chr3.4:90937474-90937493 | MS.gene37470:intron | 35.0% | |
| GGTAAAATGCGAGTTTCATA+AGG | - | chr3.4:90938297-90938316 | None:intergenic | 35.0% | |
| GGTTAGAACCTTGAAATTGT+AGG | - | chr3.4:90937226-90937245 | None:intergenic | 35.0% | |
| GTAGAATCATTAGAACAGCT+TGG | + | chr3.4:90937766-90937785 | MS.gene37470:CDS | 35.0% | |
| GTTTCACTAAATCAAGGACT+TGG | - | chr3.4:90936693-90936712 | None:intergenic | 35.0% | |
| TGCGCTAAATAGCTTCTATA+TGG | - | chr3.4:90938225-90938244 | None:intergenic | 35.0% | |
| TTAATCGAAACCCTTCTTCT+TGG | + | chr3.4:90937989-90938008 | MS.gene37470:CDS | 35.0% | |
| TTATCAATGAGTGTATCACC+AGG | - | chr3.4:90937247-90937266 | None:intergenic | 35.0% | |
| TTTGCATCAGGCAATACTTT+GGG | + | chr3.4:90938084-90938103 | MS.gene37470:CDS | 35.0% | |
| ! | AATTTGGAACCAACTTGAGA+TGG | - | chr3.4:90937862-90937881 | None:intergenic | 35.0% |
| ! | ACAATTTCAAGGTTCTAACC+TGG | + | chr3.4:90937226-90937245 | MS.gene37470:intron | 35.0% |
| ! | ATTTGGAACCAACTTGAGAT+GGG | - | chr3.4:90937861-90937880 | None:intergenic | 35.0% |
| ! | GCATCTATTTTCGCTATCAA+AGG | - | chr3.4:90938318-90938337 | None:intergenic | 35.0% |
| ! | GTGCGTATGACTTGTATTAT+AGG | + | chr3.4:90938345-90938364 | MS.gene37470:CDS | 35.0% |
| ! | TTTTGCATCAGGCAATACTT+TGG | + | chr3.4:90938083-90938102 | MS.gene37470:CDS | 35.0% |
| !! | CTCCAGAGGAATTGTTTTAT+AGG | + | chr3.4:90938382-90938401 | MS.gene37470:CDS | 35.0% |
| !!! | AAGATATTGGTTTTCCTGAG+GGG | + | chr3.4:90938265-90938284 | MS.gene37470:CDS | 35.0% |
| !!! | GTCTTTTTTTTCTTTGGTGG+TGG | - | chr3.4:90937512-90937531 | None:intergenic | 35.0% |
| !!! | TTTTCTTATGGTGATGGTGA+CGG | + | chr3.4:90938432-90938451 | MS.gene37470:CDS | 35.0% |
| !!! | TTTTTTTAATGCACCTGGAG+TGG | + | chr3.4:90936472-90936491 | MS.gene37470:CDS | 35.0% |
| AAAGCAAGCAATTCCAATGG+AGG | + | chr3.4:90937910-90937929 | MS.gene37470:CDS | 40.0% | |
| AAGCAAGCAATTCCAATGGA+GGG | + | chr3.4:90937911-90937930 | MS.gene37470:CDS | 40.0% | |
| AATTTCTTGCGCCAAGAAGA+AGG | - | chr3.4:90938003-90938022 | None:intergenic | 40.0% | |
| AGGAAGTAGAACCAAAGCTA+GGG | - | chr3.4:90936508-90936527 | None:intergenic | 40.0% | |
| ATACAAGTCATACGCACTTC+CGG | - | chr3.4:90938342-90938361 | None:intergenic | 40.0% | |
| ATACTTGTCTCACACAGCTT+AGG | + | chr3.4:90937943-90937962 | MS.gene37470:CDS | 40.0% | |
| ATTTCTTGCGCCAAGAAGAA+GGG | - | chr3.4:90938002-90938021 | None:intergenic | 40.0% | |
| CCATCACCATAAGAAAACTC+TGG | - | chr3.4:90938429-90938448 | None:intergenic | 40.0% | |
| CGATCGAATTGACAAACTCA+CGG | - | chr3.4:90936742-90936761 | None:intergenic | 40.0% | |
| CTGTGTGAGACAAGTATTAC+TGG | - | chr3.4:90937940-90937959 | None:intergenic | 40.0% | |
| GAACAGCTTGGTTACATAGA+TGG | + | chr3.4:90937778-90937797 | MS.gene37470:CDS | 40.0% | |
| GAGATCATCCAATTTGGTTG+TGG | + | chr3.4:90936665-90936684 | MS.gene37470:intron | 40.0% | |
| GATAGCGAAAATAGATGCAC+CGG | + | chr3.4:90938320-90938339 | MS.gene37470:CDS | 40.0% | |
| TACAAAGACTAATCCCTCGA+AGG | - | chr3.4:90937060-90937079 | None:intergenic | 40.0% | |
| TAGATTCGAACCAGGATCTT+TGG | - | chr3.4:90936985-90937004 | None:intergenic | 40.0% | |
| TAGGATTAGGCAAAAGCCAT+AGG | - | chr3.4:90938167-90938186 | None:intergenic | 40.0% | |
| TATAGCACTTTCTGCTCCAT+GGG | + | chr3.4:90938035-90938054 | MS.gene37470:CDS | 40.0% | |
| TCACCATAAGAAAACTCTGG+GGG | - | chr3.4:90938426-90938445 | None:intergenic | 40.0% | |
| TGGGAAGGAATATAATGCAG+TGG | + | chr3.4:90937318-90937337 | MS.gene37470:intron | 40.0% | |
| TGTTGGCACTTGAATCTCTA+TGG | + | chr3.4:90938475-90938494 | MS.gene37470:CDS | 40.0% | |
| TTATAGCACTTTCTGCTCCA+TGG | + | chr3.4:90938034-90938053 | MS.gene37470:CDS | 40.0% | |
| TTCAGCTTAACCAAAGATCC+TGG | + | chr3.4:90936972-90936991 | MS.gene37470:intron | 40.0% | |
| ! | AGAGCTCATGATGGAAAGTT+TGG | - | chr3.4:90936773-90936792 | None:intergenic | 40.0% |
| ! | CCAGAGTTTTCTTATGGTGA+TGG | + | chr3.4:90938426-90938445 | MS.gene37470:CDS | 40.0% |
| ! | CTCATGCTCAACTTGATTTG+AGG | + | chr3.4:90938616-90938635 | MS.gene37470:CDS | 40.0% |
| ! | GAACTTCTGAGAGTAACCTA+TGG | + | chr3.4:90938148-90938167 | MS.gene37470:CDS | 40.0% |
| ! | GCTCCCTATGATTTTCGATA+TGG | + | chr3.4:90937817-90937836 | MS.gene37470:CDS | 40.0% |
| !! | TTCTCATGGCGGACAAAATA+GGG | + | chr3.4:90937637-90937656 | MS.gene37470:intron | 40.0% |
| !!! | AGATATTGGTTTTCCTGAGG+GGG | + | chr3.4:90938266-90938285 | MS.gene37470:CDS | 40.0% |
| !!! | TTTTTTTCTTTGGTGGTGGC+CGG | - | chr3.4:90937508-90937527 | None:intergenic | 40.0% |
| AATATGCAAGGTTCGAACCC+CGG | + | chr3.4:90937486-90937505 | MS.gene37470:intron | 45.0% | |
| ACTTGGTCCCACAACCAAAT+TGG | - | chr3.4:90936676-90936695 | None:intergenic | 45.0% | |
| ACTTGTGTAGGCTTGTCACA+GGG | + | chr3.4:90937728-90937747 | MS.gene37470:intron | 45.0% | |
| ATAGCACTTTCTGCTCCATG+GGG | + | chr3.4:90938036-90938055 | MS.gene37470:CDS | 45.0% | |
| CTTTGTATAGTTGCGTGCAG+AGG | + | chr3.4:90937073-90937092 | MS.gene37470:intron | 45.0% | |
| GAGGAAGTAGAACCAAAGCT+AGG | - | chr3.4:90936509-90936528 | None:intergenic | 45.0% | |
| TACTTGTGTAGGCTTGTCAC+AGG | + | chr3.4:90937727-90937746 | MS.gene37470:intron | 45.0% | |
| TCATAAGGATAAACCCCCTC+AGG | - | chr3.4:90938282-90938301 | None:intergenic | 45.0% | |
| TGTGAACATGGTGAGCTTGT+TGG | + | chr3.4:90938458-90938477 | MS.gene37470:CDS | 45.0% | |
| ! | GCTCATGATGGAAAGTTTGG+TGG | - | chr3.4:90936770-90936789 | None:intergenic | 45.0% |
| !! | GCAAGAGCGTTTGAATGAGA+TGG | + | chr3.4:90936937-90936956 | MS.gene37470:intron | 45.0% |
| !! | GTTCTCATGGCGGACAAAAT+AGG | + | chr3.4:90937636-90937655 | MS.gene37470:intron | 45.0% |
| !! | TATTACTGGCTTCCCTCCAT+TGG | - | chr3.4:90937926-90937945 | None:intergenic | 45.0% |
| !!! | TTTTTTCTTTGGTGGTGGCC+GGG | - | chr3.4:90937507-90937526 | None:intergenic | 45.0% |
| !!! | AATATTTTCAATTTTTTTTT+TGG | - | chr3.4:90937113-90937132 | None:intergenic | 5.0% |
| CTCATGGCTAGATTCGAACC+AGG | - | chr3.4:90936993-90937012 | None:intergenic | 50.0% | |
| CTTGTCTCACACAGCTTAGG+AGG | + | chr3.4:90937946-90937965 | MS.gene37470:CDS | 50.0% | |
| GAGAACTTTGCCACCCATTG+CGG | + | chr3.4:90937033-90937052 | MS.gene37470:intron | 50.0% | |
| TAGGCTTGTCACAGGGTACA+TGG | + | chr3.4:90937735-90937754 | MS.gene37470:intron | 50.0% | |
| TCATCAACAGTTCCACCCCA+TGG | - | chr3.4:90938054-90938073 | None:intergenic | 50.0% | |
| ! | AAAGGGTGTGAAGACTCCAG+AGG | + | chr3.4:90938368-90938387 | MS.gene37470:CDS | 50.0% |
| ! | GAGCCCCCAGAGTTTTCTTA+TGG | + | chr3.4:90938420-90938439 | MS.gene37470:CDS | 50.0% |
| !! | TGGTGACGGAACTGTGAACA+TGG | + | chr3.4:90938446-90938465 | MS.gene37470:CDS | 50.0% |
| !!! | TTTTTCTTTGGTGGTGGCCG+GGG | - | chr3.4:90937506-90937525 | None:intergenic | 50.0% |
| AATCCCTCGAAGGACCGCAA+TGG | - | chr3.4:90937050-90937069 | None:intergenic | 55.0% | |
| AGTTGCGTGCAGAGGATACC+CGG | + | chr3.4:90937081-90937100 | MS.gene37470:intron | 55.0% | |
| ATCCCTCGAAGGACCGCAAT+GGG | - | chr3.4:90937049-90937068 | None:intergenic | 55.0% | |
| CCAACTTGAGATGGGTGACC+TGG | - | chr3.4:90937853-90937872 | None:intergenic | 55.0% | |
| CCAGGTCACCCATCTCAAGT+TGG | + | chr3.4:90937850-90937869 | MS.gene37470:CDS | 55.0% | |
| CGATATGGTCTAGCTGCACC+AGG | + | chr3.4:90937832-90937851 | MS.gene37470:CDS | 55.0% | |
| GAGACACGTGTCCCTAGCTT+TGG | + | chr3.4:90936494-90936513 | MS.gene37470:CDS | 55.0% | |
| TGAGCCTAGCTCAGTTGGCA+GGG | + | chr3.4:90937452-90937471 | MS.gene37470:intron | 55.0% | |
| CACCCATTGCGGTCCTTCGA+GGG | + | chr3.4:90937044-90937063 | MS.gene37470:intron | 60.0% | |
| CCAACTGAGCTAGGCTCACG+AGG | - | chr3.4:90937450-90937469 | None:intergenic | 60.0% | |
| CCTCGTGAGCCTAGCTCAGT+TGG | + | chr3.4:90937447-90937466 | MS.gene37470:intron | 60.0% | |
| CTGTCCCTGCCAACTGAGCT+AGG | - | chr3.4:90937459-90937478 | None:intergenic | 60.0% | |
| GCACTTTCTGCTCCATGGGG+TGG | + | chr3.4:90938039-90938058 | MS.gene37470:CDS | 60.0% | |
| GTGAGCCTAGCTCAGTTGGC+AGG | + | chr3.4:90937451-90937470 | MS.gene37470:intron | 60.0% | |
| CCACCCATTGCGGTCCTTCG+AGG | + | chr3.4:90937043-90937062 | MS.gene37470:intron | 65.0% | |
| CCTCGAAGGACCGCAATGGG+TGG | - | chr3.4:90937046-90937065 | None:intergenic | 65.0% | |
| GGGACACGTGTCTCCACTCC+AGG | - | chr3.4:90936488-90936507 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 90936440 | 90938671 | 90936440 | ID=MS.gene37470 |
| chr3.4 | mRNA | 90936440 | 90938671 | 90936440 | ID=MS.gene37470.t1;Parent=MS.gene37470 |
| chr3.4 | exon | 90936440 | 90936555 | 90936440 | ID=MS.gene37470.t1.exon1;Parent=MS.gene37470.t1 |
| chr3.4 | CDS | 90936440 | 90936555 | 90936440 | ID=cds.MS.gene37470.t1;Parent=MS.gene37470.t1 |
| chr3.4 | exon | 90937738 | 90938671 | 90937738 | ID=MS.gene37470.t1.exon2;Parent=MS.gene37470.t1 |
| chr3.4 | CDS | 90937738 | 90938671 | 90937738 | ID=cds.MS.gene37470.t1;Parent=MS.gene37470.t1 |
| Gene Sequence |
| Protein sequence |
