AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39052

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39052.t1 MTR_7g091390 94.406 429 9 2 1 429 1 414 0.0 830
MS.gene39052.t1 MTR_7g091390 93.750 336 9 1 94 429 3 326 0.0 649
MS.gene39052.t1 MTR_4g130270 55.615 187 72 3 42 218 32 217 5.94e-63 207
MS.gene39052.t1 MTR_7g009410 50.802 187 78 4 42 218 50 232 5.22e-55 187
MS.gene39052.t1 MTR_8g044070 57.229 166 62 3 24 183 21 183 2.32e-54 186
MS.gene39052.t1 MTR_4g127930 63.359 131 43 1 55 180 157 287 9.83e-54 187
MS.gene39052.t1 MTR_2g460730 44.280 271 119 8 49 298 39 298 7.15e-53 181
MS.gene39052.t1 MTR_6g011490 52.688 186 74 4 43 218 47 228 1.15e-52 181
MS.gene39052.t1 MTR_5g015070 64.885 131 41 1 55 180 247 377 8.33e-52 182
MS.gene39052.t1 MTR_7g080460 64.122 131 42 1 55 180 257 387 2.35e-51 184
MS.gene39052.t1 MTR_4g065370 56.552 145 58 1 41 180 147 291 1.13e-50 179
MS.gene39052.t1 MTR_8g468920 43.816 283 120 9 56 312 68 337 2.67e-50 175
MS.gene39052.t1 MTR_2g098180 60.305 131 47 1 55 180 165 295 6.14e-50 177
MS.gene39052.t1 MTR_8g068510 59.420 138 48 2 48 180 122 256 1.63e-49 173
MS.gene39052.t1 MTR_5g031880 62.595 131 41 2 55 180 222 349 6.11e-49 174
MS.gene39052.t1 MTR_8g020510 56.944 144 54 2 42 180 233 373 3.19e-47 171
MS.gene39052.t1 MTR_4g097520 62.595 131 41 2 55 180 308 435 5.05e-47 171
MS.gene39052.t1 MTR_3g103460 57.237 152 54 3 36 179 286 434 7.32e-47 171
MS.gene39052.t1 MTR_4g007770 53.333 180 70 4 49 218 28 203 2.12e-46 162
MS.gene39052.t1 MTR_1g017400 63.077 130 40 2 55 179 310 436 2.22e-46 169
MS.gene39052.t1 MTR_8g044040 62.500 136 43 2 53 183 52 184 2.37e-45 162
MS.gene39052.t1 MTR_4g061200 48.529 136 53 3 61 192 132 254 1.06e-25 108
MS.gene39052.t1 MTR_4g061200 48.529 136 53 3 61 192 132 254 4.93e-25 107
MS.gene39052.t1 MTR_4g061200 50.407 123 47 2 61 179 132 244 1.00e-24 105
MS.gene39052.t1 MTR_7g100590 47.794 136 54 3 61 192 140 262 1.46e-24 105
MS.gene39052.t1 MTR_4g061200 50.407 123 47 2 61 179 132 244 5.78e-24 103
MS.gene39052.t1 MTR_2g093060 47.059 136 55 3 61 192 135 257 7.97e-24 103
MS.gene39052.t1 MTR_2g093060 47.059 136 55 3 61 192 135 257 8.46e-24 103
MS.gene39052.t1 MTR_4g094868 46.324 136 56 3 61 192 177 299 1.31e-23 103
MS.gene39052.t1 MTR_4g094868 46.324 136 56 3 61 192 177 299 1.32e-23 103
MS.gene39052.t1 MTR_5g016810 46.324 136 56 3 61 192 153 275 2.91e-23 102
MS.gene39052.t1 MTR_5g016810 46.212 132 57 2 61 188 153 274 7.32e-23 101
MS.gene39052.t1 MTR_2g093060 48.780 123 49 2 61 179 135 247 8.61e-23 100
MS.gene39052.t1 MTR_4g094868 47.170 106 49 2 91 192 41 143 1.24e-16 81.3
MS.gene39052.t1 MTR_1g049140 49.074 108 44 2 57 164 134 230 1.97e-16 79.0
MS.gene39052.t1 MTR_1g049140 49.074 108 44 2 57 164 134 230 3.05e-16 80.5
MS.gene39052.t1 MTR_1g049140 49.074 108 44 2 57 164 134 230 5.20e-16 79.3
MS.gene39052.t1 MTR_7g061190 42.169 83 41 2 114 192 25 104 4.21e-14 70.1
MS.gene39052.t1 MTR_3g090510 43.243 111 53 3 98 204 163 267 4.15e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39052.t1 AT2G41710 63.333 420 121 9 18 429 28 422 2.54e-173 492
MS.gene39052.t1 AT2G41710 66.327 392 111 8 18 401 28 406 3.19e-172 490
MS.gene39052.t1 AT2G41710 62.588 425 121 10 18 429 28 427 1.31e-170 485
MS.gene39052.t1 AT2G41710 58.462 455 121 10 18 429 28 457 8.67e-166 474
MS.gene39052.t1 AT3G54320 70.588 136 35 1 53 183 58 193 5.65e-62 207
MS.gene39052.t1 AT3G54320 70.588 136 35 1 53 183 58 193 8.14e-62 206
MS.gene39052.t1 AT1G51190 64.885 131 41 1 55 180 185 315 5.22e-54 189
MS.gene39052.t1 AT5G57390 64.615 130 41 1 55 179 80 209 1.75e-53 184
MS.gene39052.t1 AT5G65510 57.616 151 55 2 34 179 151 297 4.68e-53 180
MS.gene39052.t1 AT5G57390 64.615 130 41 1 55 179 198 327 1.21e-52 185
MS.gene39052.t1 AT5G65510 57.237 152 56 2 34 180 151 298 7.55e-52 180
MS.gene39052.t1 AT1G72570 56.944 144 57 1 42 180 205 348 8.93e-52 179
MS.gene39052.t1 AT3G20840 61.832 131 45 1 55 180 176 306 9.06e-52 183
MS.gene39052.t1 AT5G17430 64.122 131 42 1 55 180 143 273 1.15e-51 182
MS.gene39052.t1 AT5G65510 57.237 152 56 2 34 180 209 356 1.46e-51 181
MS.gene39052.t1 AT5G65510 57.237 152 56 2 34 180 209 356 1.46e-51 181
MS.gene39052.t1 AT5G17430 64.122 131 42 1 55 180 205 335 2.22e-51 182
MS.gene39052.t1 AT1G79700 63.514 148 49 1 41 183 33 180 2.57e-50 173
MS.gene39052.t1 AT5G10510 61.069 131 46 1 55 180 225 355 5.91e-50 177
MS.gene39052.t1 AT5G10510 61.069 131 46 1 55 180 225 355 5.91e-50 177
MS.gene39052.t1 AT4G37750 54.037 161 63 2 31 180 248 408 6.44e-50 177
MS.gene39052.t1 AT5G10510 61.069 131 46 1 55 180 248 378 1.07e-49 177
MS.gene39052.t1 AT1G16060 61.905 147 51 1 42 183 40 186 1.10e-49 172
MS.gene39052.t1 AT5G10510 61.069 131 46 1 55 180 263 393 1.46e-49 177
MS.gene39052.t1 AT5G10510 61.069 131 46 1 55 180 263 393 1.46e-49 177
MS.gene39052.t1 AT1G79700 64.789 142 45 1 41 177 33 174 4.76e-49 169
MS.gene39052.t1 AT5G10510 58.779 131 46 2 55 180 225 352 1.23e-45 166
MS.gene39052.t1 AT5G10510 50.993 151 49 2 55 180 263 413 8.27e-43 159
MS.gene39052.t1 AT3G54320 65.263 95 28 1 94 183 33 127 3.57e-34 131
MS.gene39052.t1 AT3G54320 65.263 95 28 1 94 183 33 127 3.57e-34 131
MS.gene39052.t1 AT2G39250 49.541 109 45 1 61 169 109 207 5.96e-27 108
MS.gene39052.t1 AT2G28550 44.000 150 67 3 61 206 154 290 1.31e-26 109
MS.gene39052.t1 AT2G39250 49.541 109 45 1 61 169 109 207 2.55e-26 108
MS.gene39052.t1 AT1G79700 63.158 95 30 1 94 183 10 104 1.77e-24 101
MS.gene39052.t1 AT2G28550 49.593 123 48 2 61 179 154 266 2.42e-24 102
MS.gene39052.t1 AT2G28550 49.593 123 48 2 61 179 154 266 2.42e-24 102
MS.gene39052.t1 AT2G28550 47.794 136 54 3 61 192 154 276 6.35e-24 103
MS.gene39052.t1 AT4G36920 46.324 136 56 3 61 192 132 254 1.60e-23 102
MS.gene39052.t1 AT4G36920 46.324 136 56 3 61 192 132 254 1.60e-23 102
MS.gene39052.t1 AT5G67180 43.448 145 65 3 61 201 97 228 2.77e-23 98.6
MS.gene39052.t1 AT1G16060 59.794 97 34 1 92 183 20 116 3.83e-23 99.0
MS.gene39052.t1 AT5G67180 45.588 136 57 3 61 192 97 219 5.11e-23 99.0
MS.gene39052.t1 AT2G28550 49.593 123 48 2 61 179 154 266 5.27e-23 101
MS.gene39052.t1 AT5G67180 45.588 136 57 3 61 192 97 219 8.15e-23 97.8
MS.gene39052.t1 AT1G79700 61.290 93 31 1 96 183 6 98 1.13e-22 96.3
MS.gene39052.t1 AT5G67180 45.588 136 57 3 61 192 97 219 1.82e-22 98.2
MS.gene39052.t1 AT5G60120 47.656 128 53 2 57 180 157 274 4.45e-22 98.2
MS.gene39052.t1 AT5G60120 47.656 128 53 2 57 180 157 274 4.45e-22 98.2
MS.gene39052.t1 AT5G60120 47.656 128 53 2 57 180 157 274 4.45e-22 98.2
MS.gene39052.t1 AT5G60120 47.656 128 53 2 57 180 157 274 6.38e-22 98.2
MS.gene39052.t1 AT5G60120 48.031 127 52 2 57 179 157 273 7.13e-22 98.2
MS.gene39052.t1 AT5G60120 47.656 128 53 2 57 180 157 274 8.69e-22 97.8
MS.gene39052.t1 AT3G54990 50.467 107 43 1 61 167 123 219 4.55e-21 92.4
MS.gene39052.t1 AT3G54990 50.467 107 43 1 61 167 123 219 1.56e-20 92.8
MS.gene39052.t1 AT2G28550 47.778 90 43 1 94 179 11 100 1.18e-13 71.6
MS.gene39052.t1 AT3G54320 57.692 52 17 1 137 183 1 52 9.54e-11 62.8

Find 103 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTGCTGCTCTGAAATAT+TGG 0.236770 7.4:+17571863 MS.gene39052:CDS
CACATTAATCCCAATGTTCT+TGG 0.244575 7.4:-17574715 None:intergenic
TTACAAACATTGAAGGTATA+GGG 0.252605 7.4:+17573039 MS.gene39052:intron
GTCGTTATGAAGCGCATCTA+TGG 0.312719 7.4:+17571504 MS.gene39052:CDS
CCTTGCTGCTCTGAAATATT+GGG 0.335890 7.4:+17571864 MS.gene39052:CDS
GATAATCTTGTTCCAGCATC+AGG 0.339232 7.4:-17573167 None:intergenic
TGTGGTGATGGCAGTATACT+TGG 0.356648 7.4:+17571682 MS.gene39052:intron
GTAGATGGAGCTGCGTTTAC+CGG 0.376066 7.4:-17571183 None:intergenic
CCTGGTGACACCACGGTAGA+TGG 0.379423 7.4:-17571198 None:intergenic
GCTCTGAAATATTGGGGTCC+TGG 0.386290 7.4:+17571871 MS.gene39052:CDS
GATGTCTCCGCAGACTTGCC+TGG 0.389093 7.4:-17571044 None:intergenic
CCTAACTCTGGCATCTTGTA+TGG 0.401574 7.4:-17573269 None:intergenic
CTCTGAAATATTGGGGTCCT+GGG 0.403135 7.4:+17571872 MS.gene39052:CDS
CATTGGATCAACAGTGTTGT+AGG 0.410420 7.4:-17573600 None:intergenic
CTCATTCCCATGCTTCCTGC+TGG 0.416267 7.4:+17573647 MS.gene39052:CDS
AAACATAGTGTAGGTTGAAT+CGG 0.419840 7.4:-17574757 None:intergenic
ATTTAACAAATCACATCAAA+TGG 0.429612 7.4:+17573120 MS.gene39052:CDS
TTCACTTTACCAAGAACATT+GGG 0.432706 7.4:+17574706 MS.gene39052:CDS
CCATCATATGGTCGAATGGC+TGG 0.434411 7.4:+17572833 MS.gene39052:CDS
TCTTGTATGGTTCTGTCGGT+TGG 0.439420 7.4:-17573256 None:intergenic
CAATGGTAGATCCTGCTCTC+TGG 0.448245 7.4:+17573618 MS.gene39052:CDS
CCATACAAGATGCCAGAGTT+AGG 0.449780 7.4:+17573269 MS.gene39052:CDS
GCTTCGTCTTCCTCCGATCC+AGG 0.465220 7.4:+17571026 MS.gene39052:CDS
TTGCTGCCATCATGATTTGA+AGG 0.466238 7.4:-17573479 None:intergenic
CAAAATATCGTGGACTCTCC+AGG 0.470890 7.4:+17572535 MS.gene39052:CDS
GAACATTGGGATTAATGTGC+AGG 0.472237 7.4:+17574719 MS.gene39052:CDS
AAGAATACCTTGCATCTTTG+CGG 0.474829 7.4:+17572413 MS.gene39052:CDS
GTGTGTGTATTAGGCATAGA+TGG 0.475086 7.4:+17571477 MS.gene39052:intron
GCGGAAAGTGAATATGTTAG+TGG 0.475751 7.4:+17573074 MS.gene39052:CDS
ATGAGAGATGTCCAGAGAGC+AGG 0.478776 7.4:-17573629 None:intergenic
TACTTCAGTAGTATACATTA+CGG 0.480199 7.4:+17572863 MS.gene39052:CDS
GATCGACTTGGCATTGCAAT+GGG 0.482410 7.4:+17573503 MS.gene39052:CDS
TTACTGTGAACTTAAAACAT+TGG 0.484291 7.4:+17573223 MS.gene39052:CDS
AGACTGTGACAATATACTTA+AGG 0.496868 7.4:-17573336 None:intergenic
GTTCACTTTACCAAGAACAT+TGG 0.499780 7.4:+17574705 MS.gene39052:CDS
AAGAATCGACACCCTGATGC+TGG 0.500033 7.4:+17573155 MS.gene39052:CDS
CTCCGCAGACTTGCCTGGAT+CGG 0.504022 7.4:-17571039 None:intergenic
AACATAGTGTAGGTTGAATC+GGG 0.509559 7.4:-17574756 None:intergenic
AACAAATCACATCAAATGGT+GGG 0.514951 7.4:+17573124 MS.gene39052:CDS
CCATCTACCGTGGTGTCACC+AGG 0.516365 7.4:+17571198 MS.gene39052:CDS
GGCATCTTGTATGGTTCTGT+CGG 0.520968 7.4:-17573260 None:intergenic
AATCAAAATCAGAATAAGAA+AGG 0.521721 7.4:+17571542 MS.gene39052:CDS
GCTGTACGAGAAAGGCCAGC+AGG 0.522181 7.4:-17573662 None:intergenic
GATAGGGGCGTATGATGATG+AGG 0.523399 7.4:+17571819 MS.gene39052:intron
TTGTGCAGCGGTCCTAACTC+TGG 0.524572 7.4:-17573281 None:intergenic
CGCAGACTTGCCTGGATCGG+AGG 0.526214 7.4:-17571036 None:intergenic
GACATCAGAAGCAGTGGCGG+CGG 0.535185 7.4:+17571061 MS.gene39052:CDS
CAACCTCAGCTGTACGAGAA+AGG 0.537388 7.4:-17573670 None:intergenic
GAAAGGCCAGCAGGAAGCAT+GGG 0.538190 7.4:-17573653 None:intergenic
TGGTATATAAATTAGTCGAT+GGG 0.538963 7.4:+17572808 MS.gene39052:intron
TACAAACATTGAAGGTATAG+GGG 0.541200 7.4:+17573040 MS.gene39052:intron
TGATCGACTTGGCATTGCAA+TGG 0.542352 7.4:+17573502 MS.gene39052:CDS
TCGTTATGAAGCGCATCTAT+GGG 0.548483 7.4:+17571505 MS.gene39052:CDS
CTGCGTTTACCGGCGGCACA+CGG 0.551976 7.4:-17571173 None:intergenic
CCAGCCATTCGACCATATGA+TGG 0.556230 7.4:-17572833 None:intergenic
AGAAAGGCCAGCAGGAAGCA+TGG 0.556276 7.4:-17573654 None:intergenic
CAGAGAGCAGGATCTACCAT+TGG 0.557981 7.4:-17573617 None:intergenic
CTACACTATGTTTCAGCCAC+GGG 0.558537 7.4:+17574767 MS.gene39052:CDS
TAACAAATCACATCAAATGG+TGG 0.563622 7.4:+17573123 MS.gene39052:CDS
AAGAAAGCGAAGAAAGAGAG+AGG 0.564008 7.4:+17571116 MS.gene39052:CDS
CAAGAGCATGCAAGAGAAAG+CGG 0.565366 7.4:+17573367 MS.gene39052:CDS
CAGAATAAGAAAGGAAAACA+AGG 0.566260 7.4:+17571551 MS.gene39052:CDS
AAAATGCCTCCGTGTGCCGC+CGG 0.567788 7.4:+17571164 MS.gene39052:CDS
CTGACAAGAATGATGTCAAT+GGG 0.573012 7.4:-17573562 None:intergenic
GGGAAGTTAATGAGAGTCCC+AGG 0.575325 7.4:-17571889 None:intergenic
CTACAACACTGTTGATCCAA+TGG 0.582269 7.4:+17573601 MS.gene39052:CDS
GAGAAACCTTCAAATCATGA+TGG 0.583795 7.4:+17573473 MS.gene39052:CDS
GCTGACAAGAATGATGTCAA+TGG 0.584900 7.4:-17573563 None:intergenic
CAATGAGTTGGATCGTGGGA+AGG 0.597269 7.4:+17573445 MS.gene39052:CDS
CTTGCTGCTCTGAAATATTG+GGG 0.598020 7.4:+17571865 MS.gene39052:CDS
ATCTATGGGATAAAAGTACA+TGG 0.600414 7.4:+17571519 MS.gene39052:CDS
GGGGCCATCATATGGTCGAA+TGG 0.601072 7.4:+17572829 MS.gene39052:CDS
ACAAATCACATCAAATGGTG+GGG 0.603517 7.4:+17573125 MS.gene39052:CDS
ATAGTCAATGAGTTGGATCG+TGG 0.603810 7.4:+17573440 MS.gene39052:CDS
TGTATTAGGCATAGATGGAC+TGG 0.604842 7.4:+17571482 MS.gene39052:intron
TGGCCTTTCTCGTACAGCTG+AGG 0.608018 7.4:+17573667 MS.gene39052:CDS
GATGGCAGCAATGATCGACT+TGG 0.610825 7.4:+17573491 MS.gene39052:CDS
TGCGGAGACATCAGAAGCAG+TGG 0.612285 7.4:+17571055 MS.gene39052:CDS
TAGTCAATGAGTTGGATCGT+GGG 0.613377 7.4:+17573441 MS.gene39052:CDS
ATAATCTTGTTCCAGCATCA+GGG 0.615337 7.4:-17573166 None:intergenic
CCCAATATTTCAGAGCAGCA+AGG 0.616474 7.4:-17571864 None:intergenic
GGTATATAAATTAGTCGATG+GGG 0.619246 7.4:+17572809 MS.gene39052:intron
GTGGTGATGGCAGTATACTT+GGG 0.622929 7.4:+17571683 MS.gene39052:intron
TAATGTGCAGGTTACAAAGA+CGG 0.624241 7.4:+17574731 MS.gene39052:CDS
GGATGTCCCAATCACTCCCG+TGG 0.627734 7.4:-17574783 None:intergenic
CCTACACTATGTTTCAGCCA+CGG 0.629098 7.4:+17574766 MS.gene39052:CDS
CTCCGATCCAGGCAAGTCTG+CGG 0.635318 7.4:+17571037 MS.gene39052:CDS
AATACCTTGCATCTTTGCGG+AGG 0.639105 7.4:+17572416 MS.gene39052:CDS
CACACCTCCGCAAAGATGCA+AGG 0.641142 7.4:-17572420 None:intergenic
GCTTGATGCAGGAAGAGCAG+TGG 0.650186 7.4:+17572495 MS.gene39052:intron
CGTTTACCGGCGGCACACGG+AGG 0.650287 7.4:-17571170 None:intergenic
GGAGACATCAGAAGCAGTGG+CGG 0.652456 7.4:+17571058 MS.gene39052:CDS
TTATCAGAAGAAAAGAAACA+TGG 0.660718 7.4:+17573185 MS.gene39052:CDS
GATGGAGCTGCGTTTACCGG+CGG 0.662168 7.4:-17571180 None:intergenic
GTGTTGTAGGCTGTCAAAAG+TGG 0.663016 7.4:-17573587 None:intergenic
AGAGGACTATCAAAATATCG+TGG 0.664033 7.4:+17572525 MS.gene39052:CDS
CCGTGGCTGAAACATAGTGT+AGG 0.666827 7.4:-17574766 None:intergenic
GTATGATGATGAGGAAGCAG+CGG 0.671234 7.4:+17571828 MS.gene39052:CDS
GTATATAAATTAGTCGATGG+GGG 0.671938 7.4:+17572810 MS.gene39052:intron
CATTGCAATGGGAATGAGTG+AGG 0.692120 7.4:+17573514 MS.gene39052:CDS
CTAGGTACCTGGTGACACCA+CGG 0.696451 7.4:-17571205 None:intergenic
TATAGGGGATAATTCAGCTG+CGG 0.697874 7.4:+17573055 MS.gene39052:CDS
AAACGCAGCTCCATCTACCG+TGG 0.712028 7.4:+17571188 MS.gene39052:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAACCAATTTAAAATAT+TGG - chr7.4:17574077-17574096 None:intergenic 10.0%
!! AATATAATTAATGCAACTTT+AGG + chr7.4:17574319-17574338 MS.gene39052:intron 15.0%
!! ACTGTAATTTGAAAAATTAT+TGG - chr7.4:17574453-17574472 None:intergenic 15.0%
!!! ATTTTAAATTGGTTTATTCT+GGG + chr7.4:17574079-17574098 MS.gene39052:intron 15.0%
!!! TATTTTAAATTGGTTTATTC+TGG + chr7.4:17574078-17574097 MS.gene39052:intron 15.0%
!!! TTTTAATGCATTGTTAATAT+TGG + chr7.4:17571763-17571782 MS.gene39052:intron 15.0%
!! AATACTAACAGATAAAAGAA+TGG - chr7.4:17572152-17572171 None:intergenic 20.0%
!! AATCAAAATCAGAATAAGAA+AGG + chr7.4:17571542-17571561 MS.gene39052:CDS 20.0%
!! AGAAATATGTGATATGATTA+TGG - chr7.4:17574368-17574387 None:intergenic 20.0%
!! ATTTAACAAATCACATCAAA+TGG + chr7.4:17573120-17573139 MS.gene39052:CDS 20.0%
!! CATTCAATAAAATATTAGCT+TGG - chr7.4:17572912-17572931 None:intergenic 20.0%
!! GAATCATAAAATGGAAAATT+TGG + chr7.4:17572215-17572234 MS.gene39052:intron 20.0%
!! TATTAGATTTAGATTCAGTT+TGG + chr7.4:17571272-17571291 MS.gene39052:intron 20.0%
!!! ATTCAGCCAATATTTTAAAT+TGG + chr7.4:17574068-17574087 MS.gene39052:intron 20.0%
!!! CAAGCTAATATTTTATTGAA+TGG + chr7.4:17572910-17572929 MS.gene39052:intron 20.0%
!!! GAATTGTTTTGTACTTAATT+TGG + chr7.4:17571928-17571947 MS.gene39052:intron 20.0%
!!! TATTTTTACTTTTATGAGTC+TGG + chr7.4:17573956-17573975 MS.gene39052:intron 20.0%
!!! TGATTGTTTGTTACTAAATT+TGG + chr7.4:17571448-17571467 MS.gene39052:intron 20.0%
! AATTCAAGCAATAATCTTAC+TGG - chr7.4:17571913-17571932 None:intergenic 25.0%
! ACAGTTTGAAGAATTTATTC+AGG + chr7.4:17574468-17574487 MS.gene39052:intron 25.0%
! AGATAGAGTTTAACTACTAT+AGG - chr7.4:17574503-17574522 None:intergenic 25.0%
! ATTCAAGCAATAATCTTACT+GGG - chr7.4:17571912-17571931 None:intergenic 25.0%
! ATTGTTTATCACATCTTTGT+AGG + chr7.4:17574683-17574702 MS.gene39052:intron 25.0%
! CAAAAATATAGTCAATGAGT+TGG + chr7.4:17573433-17573452 MS.gene39052:CDS 25.0%
! CATAAAATGGAAAATTTGGT+TGG + chr7.4:17572219-17572238 MS.gene39052:intron 25.0%
! CTAAATCTAATAAGAACTTG+TGG - chr7.4:17571264-17571283 None:intergenic 25.0%
! CTCATTTAACAATGCTAAAA+AGG + chr7.4:17573748-17573767 MS.gene39052:intron 25.0%
! CTTCGCATCTATAAAATTAA+AGG - chr7.4:17574142-17574161 None:intergenic 25.0%
! GATAGAGTTTAACTACTATA+GGG - chr7.4:17574502-17574521 None:intergenic 25.0%
! TACCTTCAATGTTTGTAAAA+AGG - chr7.4:17573037-17573056 None:intergenic 25.0%
! TACTTCAGTAGTATACATTA+CGG + chr7.4:17572863-17572882 MS.gene39052:CDS 25.0%
! TCTATCTGACAATAATAAGT+TGG + chr7.4:17574516-17574535 MS.gene39052:intron 25.0%
! TGATCCTTAACATATTTCAA+CGG - chr7.4:17571317-17571336 None:intergenic 25.0%
! TGGTATATAAATTAGTCGAT+GGG + chr7.4:17572808-17572827 MS.gene39052:intron 25.0%
! TTACTGTGAACTTAAAACAT+TGG + chr7.4:17573223-17573242 MS.gene39052:CDS 25.0%
! TTATCAGAAGAAAAGAAACA+TGG + chr7.4:17573185-17573204 MS.gene39052:CDS 25.0%
! TTTCTGCTAAAACAATTTGA+TGG - chr7.4:17572568-17572587 None:intergenic 25.0%
! TTTGATGAAAAATATGAAGC+AGG - chr7.4:17572046-17572065 None:intergenic 25.0%
!! CACAATTTTCATCAAACAAA+AGG - chr7.4:17572012-17572031 None:intergenic 25.0%
!! CATTGTTAATATTGGTTATG+TGG + chr7.4:17571771-17571790 MS.gene39052:intron 25.0%
!! GCTTCATATTTTTCATCAAA+AGG + chr7.4:17572046-17572065 MS.gene39052:intron 25.0%
!! TTACAAACATTGAAGGTATA+GGG + chr7.4:17573039-17573058 MS.gene39052:intron 25.0%
!! TTTACAAACATTGAAGGTAT+AGG + chr7.4:17573038-17573057 MS.gene39052:intron 25.0%
!!! CTTTTGTTTGATGAAAATTG+TGG + chr7.4:17572010-17572029 MS.gene39052:intron 25.0%
!!! CTTTTTTTATCTCCATTATC+TGG + chr7.4:17572606-17572625 MS.gene39052:intron 25.0%
!!! TACTTTTTCTTAAGTACTTC+TGG + chr7.4:17574267-17574286 MS.gene39052:intron 25.0%
!!! TTTTGTACTTAATTTGGAGA+CGG + chr7.4:17571934-17571953 MS.gene39052:intron 25.0%
AACAAATCACATCAAATGGT+GGG + chr7.4:17573124-17573143 MS.gene39052:CDS 30.0%
ACCAGATGACATTTCAATTA+AGG - chr7.4:17571972-17571991 None:intergenic 30.0%
AGACTGTGACAATATACTTA+AGG - chr7.4:17573339-17573358 None:intergenic 30.0%
ATTGTTTAATTCAGAACCAC+TGG + chr7.4:17574550-17574569 MS.gene39052:intron 30.0%
CAGAATAAGAAAGGAAAACA+AGG + chr7.4:17571551-17571570 MS.gene39052:CDS 30.0%
GCTGGTTAAGAATCATAAAA+TGG + chr7.4:17572206-17572225 MS.gene39052:intron 30.0%
GGTATATAAATTAGTCGATG+GGG + chr7.4:17572809-17572828 MS.gene39052:intron 30.0%
GTATATAAATTAGTCGATGG+GGG + chr7.4:17572810-17572829 MS.gene39052:intron 30.0%
GTGGTATATAAATTAGTCGA+TGG + chr7.4:17572807-17572826 MS.gene39052:intron 30.0%
TAACAAATCACATCAAATGG+TGG + chr7.4:17573123-17573142 MS.gene39052:CDS 30.0%
TAAGAAAGGAAAACAAGGTT+TGG + chr7.4:17571556-17571575 MS.gene39052:intron 30.0%
TAGCTGATAACATTCACATT+AGG - chr7.4:17574394-17574413 None:intergenic 30.0%
TTCACTTTACCAAGAACATT+GGG + chr7.4:17574706-17574725 MS.gene39052:CDS 30.0%
TTCTCCGTTGAAATATGTTA+AGG + chr7.4:17571310-17571329 MS.gene39052:intron 30.0%
TTGAACATAAGTCAGGTTTA+AGG + chr7.4:17571583-17571602 MS.gene39052:intron 30.0%
! AAACATAGTGTAGGTTGAAT+CGG - chr7.4:17574760-17574779 None:intergenic 30.0%
! ATCTATGGGATAAAAGTACA+TGG + chr7.4:17571519-17571538 MS.gene39052:CDS 30.0%
! CACCTTTTTACAAACATTGA+AGG + chr7.4:17573032-17573051 MS.gene39052:intron 30.0%
! TACAAACATTGAAGGTATAG+GGG + chr7.4:17573040-17573059 MS.gene39052:intron 30.0%
! TATGCATTTCATTTTGCATG+TGG + chr7.4:17572785-17572804 MS.gene39052:intron 30.0%
! TCTGAAAGTATAATGAAGCT+AGG + chr7.4:17574417-17574436 MS.gene39052:intron 30.0%
!!! CTCTTGTTATTCTTTTGTTC+TGG + chr7.4:17571726-17571745 MS.gene39052:intron 30.0%
AAGAATACCTTGCATCTTTG+CGG + chr7.4:17572413-17572432 MS.gene39052:CDS 35.0%
ACAAATCACATCAAATGGTG+GGG + chr7.4:17573125-17573144 MS.gene39052:CDS 35.0%
AGAGGACTATCAAAATATCG+TGG + chr7.4:17572525-17572544 MS.gene39052:CDS 35.0%
AGATCCACTAAAAAGTGGAT+GGG - chr7.4:17572103-17572122 None:intergenic 35.0%
ATAATCTTGTTCCAGCATCA+GGG - chr7.4:17573169-17573188 None:intergenic 35.0%
CAAAGATGCACAAATGAACA+TGG - chr7.4:17572946-17572965 None:intergenic 35.0%
CACATTAATCCCAATGTTCT+TGG - chr7.4:17574718-17574737 None:intergenic 35.0%
CAGTAGTAACACTATCATGT+TGG - chr7.4:17574037-17574056 None:intergenic 35.0%
CTGACAAGAATGATGTCAAT+GGG - chr7.4:17573565-17573584 None:intergenic 35.0%
GAGAAACCTTCAAATCATGA+TGG + chr7.4:17573473-17573492 MS.gene39052:CDS 35.0%
GCCTTAATTGAAATGTCATC+TGG + chr7.4:17571968-17571987 MS.gene39052:intron 35.0%
GTTCACTTTACCAAGAACAT+TGG + chr7.4:17574705-17574724 MS.gene39052:CDS 35.0%
TAATGATTCATTGACCAAGC+TGG + chr7.4:17572664-17572683 MS.gene39052:intron 35.0%
TAATGTGCAGGTTACAAAGA+CGG + chr7.4:17574731-17574750 MS.gene39052:CDS 35.0%
TAATTGTTTCGTGTAACCAG+TGG - chr7.4:17574569-17574588 None:intergenic 35.0%
TATTGATCCCATAACCAGTT+TGG - chr7.4:17574303-17574322 None:intergenic 35.0%
TGGTGAATTGTGTGTGTATT+AGG + chr7.4:17571468-17571487 MS.gene39052:intron 35.0%
TGTCTTTCTCATCTTTACTG+TGG + chr7.4:17572689-17572708 MS.gene39052:intron 35.0%
TTGTAAGGTTGAGTTAGTGT+AGG + chr7.4:17574623-17574642 MS.gene39052:intron 35.0%
! AACATAGTGTAGGTTGAATC+GGG - chr7.4:17574759-17574778 None:intergenic 35.0%
! ACACTATCATGTTGGTCTAA+TGG - chr7.4:17574029-17574048 None:intergenic 35.0%
! ACCTTACAAACCAGGTTTTA+TGG - chr7.4:17574612-17574631 None:intergenic 35.0%
! CTGACAATAATAAGTTGGCA+GGG + chr7.4:17574521-17574540 MS.gene39052:intron 35.0%
! TCTGACAATAATAAGTTGGC+AGG + chr7.4:17574520-17574539 MS.gene39052:intron 35.0%
!! CCTTACAAACCAGGTTTTAT+GGG - chr7.4:17574611-17574630 None:intergenic 35.0%
!! CTTACAAACCAGGTTTTATG+GGG - chr7.4:17574610-17574629 None:intergenic 35.0%
!! GAAAAGAAACATGGTTTTGC+TGG + chr7.4:17573194-17573213 MS.gene39052:CDS 35.0%
!! TTACCAGAAGTGCTTAGATA+AGG - chr7.4:17572303-17572322 None:intergenic 35.0%
!!! ATCCACTTTTTAGTGGATCT+GGG + chr7.4:17572103-17572122 MS.gene39052:intron 35.0%
!!! TGTTTTTTCTCATTGTGCAG+CGG - chr7.4:17573296-17573315 None:intergenic 35.0%
!!! TTTACCCATCCACTTTTTAG+TGG + chr7.4:17572096-17572115 MS.gene39052:intron 35.0%
AAAATATGAAGCAGGACGTG+AGG - chr7.4:17572038-17572057 None:intergenic 40.0%
AAATATGAAGCAGGACGTGA+GGG - chr7.4:17572037-17572056 None:intergenic 40.0%
AAGAAAGCGAAGAAAGAGAG+AGG + chr7.4:17571116-17571135 MS.gene39052:CDS 40.0%
AAGTCCATCCAAACTGGTTA+TGG + chr7.4:17574292-17574311 MS.gene39052:intron 40.0%
AAGTTGAAGAGTAGCTAGCT+AGG - chr7.4:17571226-17571245 None:intergenic 40.0%
AAGTTTGATCTGTGTGTTGC+AGG + chr7.4:17572342-17572361 MS.gene39052:intron 40.0%
ACTCGTCAGCAAATGTTGTT+TGG - chr7.4:17574345-17574364 None:intergenic 40.0%
AGTCCATCCAAACTGGTTAT+GGG + chr7.4:17574293-17574312 MS.gene39052:intron 40.0%
CAGATCCACTAAAAAGTGGA+TGG - chr7.4:17572104-17572123 None:intergenic 40.0%
CATATCACGTAAGCAGCAAT+AGG - chr7.4:17572476-17572495 None:intergenic 40.0%
CATTGGATCAACAGTGTTGT+AGG - chr7.4:17573603-17573622 None:intergenic 40.0%
CTAACTCAACCTTACAAACC+AGG - chr7.4:17574620-17574639 None:intergenic 40.0%
CTACAACACTGTTGATCCAA+TGG + chr7.4:17573601-17573620 MS.gene39052:CDS 40.0%
GAACATTGGGATTAATGTGC+AGG + chr7.4:17574719-17574738 MS.gene39052:CDS 40.0%
GATAATCTTGTTCCAGCATC+AGG - chr7.4:17573170-17573189 None:intergenic 40.0%
GCGGAAAGTGAATATGTTAG+TGG + chr7.4:17573074-17573093 MS.gene39052:CDS 40.0%
GCTGACAAGAATGATGTCAA+TGG - chr7.4:17573566-17573585 None:intergenic 40.0%
GTAGTATACATTACGGTACG+TGG + chr7.4:17572870-17572889 MS.gene39052:intron 40.0%
GTGTGTGTATTAGGCATAGA+TGG + chr7.4:17571477-17571496 MS.gene39052:intron 40.0%
TATAGGGGATAATTCAGCTG+CGG + chr7.4:17573055-17573074 MS.gene39052:CDS 40.0%
TCATTTGTGCATCTTTGACG+TGG + chr7.4:17572949-17572968 MS.gene39052:intron 40.0%
TCGTTATGAAGCGCATCTAT+GGG + chr7.4:17571505-17571524 MS.gene39052:CDS 40.0%
TGCAACACACAGATCAAACT+TGG - chr7.4:17572343-17572362 None:intergenic 40.0%
TGGACTGTTGAACATAAGTC+AGG + chr7.4:17571576-17571595 MS.gene39052:intron 40.0%
TGGAGTTACAGTTCTTGATC+TGG + chr7.4:17572709-17572728 MS.gene39052:intron 40.0%
TGTATTAGGCATAGATGGAC+TGG + chr7.4:17571482-17571501 MS.gene39052:intron 40.0%
TGTGCTGTGCATGAATTGAT+TGG + chr7.4:17571644-17571663 MS.gene39052:intron 40.0%
TTACGTGATATGCTTGATGC+AGG + chr7.4:17572484-17572503 MS.gene39052:intron 40.0%
TTGAGAGGACTGTAAATGGT+AGG + chr7.4:17574654-17574673 MS.gene39052:intron 40.0%
TTGCTGCCATCATGATTTGA+AGG - chr7.4:17573482-17573501 None:intergenic 40.0%
! ATAGTCAATGAGTTGGATCG+TGG + chr7.4:17573440-17573459 MS.gene39052:CDS 40.0%
! CCCATAAAACCTGGTTTGTA+AGG + chr7.4:17574608-17574627 MS.gene39052:intron 40.0%
! GATCAGCTTTTACTGTACAG+AGG + chr7.4:17571089-17571108 MS.gene39052:CDS 40.0%
! GCATTTCATTTTGCATGTGG+TGG + chr7.4:17572788-17572807 MS.gene39052:intron 40.0%
! TAGTCAATGAGTTGGATCGT+GGG + chr7.4:17573441-17573460 MS.gene39052:CDS 40.0%
! TGAGTTGAGAGGACTGTAAA+TGG + chr7.4:17574650-17574669 MS.gene39052:intron 40.0%
! TTCTGGGAGCTTCTCATTTA+TGG + chr7.4:17574095-17574114 MS.gene39052:intron 40.0%
!! ACCTTGCTGCTCTGAAATAT+TGG + chr7.4:17571863-17571882 MS.gene39052:CDS 40.0%
!! CCTTGCTGCTCTGAAATATT+GGG + chr7.4:17571864-17571883 MS.gene39052:CDS 40.0%
!! CTTGCTGCTCTGAAATATTG+GGG + chr7.4:17571865-17571884 MS.gene39052:CDS 40.0%
!!! AAGAGCAGTGGTTTTTCAAG+AGG + chr7.4:17572507-17572526 MS.gene39052:CDS 40.0%
!!! CATCCACTTTTTAGTGGATC+TGG + chr7.4:17572102-17572121 MS.gene39052:intron 40.0%
AAATCCAGTGCCCTCTTGAT+AGG + chr7.4:17572270-17572289 MS.gene39052:intron 45.0%
AATACCTTGCATCTTTGCGG+AGG + chr7.4:17572416-17572435 MS.gene39052:CDS 45.0%
AATATGAAGCAGGACGTGAG+GGG - chr7.4:17572036-17572055 None:intergenic 45.0%
AGAGAAAGCGGCAAAAAGAC+AGG + chr7.4:17573379-17573398 MS.gene39052:CDS 45.0%
AGTGCCCTCTTGATAGGAAA+AGG + chr7.4:17572276-17572295 MS.gene39052:intron 45.0%
ATGAGAAAGACAAGCCAGCT+TGG - chr7.4:17572681-17572700 None:intergenic 45.0%
CAAAATATCGTGGACTCTCC+AGG + chr7.4:17572535-17572554 MS.gene39052:CDS 45.0%
CATTGCAATGGGAATGAGTG+AGG + chr7.4:17573514-17573533 MS.gene39052:CDS 45.0%
CCATACAAGATGCCAGAGTT+AGG + chr7.4:17573269-17573288 MS.gene39052:CDS 45.0%
CCCAATATTTCAGAGCAGCA+AGG - chr7.4:17571867-17571886 None:intergenic 45.0%
CCTAACTCTGGCATCTTGTA+TGG - chr7.4:17573272-17573291 None:intergenic 45.0%
CCTACACTATGTTTCAGCCA+CGG + chr7.4:17574766-17574785 MS.gene39052:CDS 45.0%
CTACACTATGTTTCAGCCAC+GGG + chr7.4:17574767-17574786 MS.gene39052:CDS 45.0%
CTCCCAGATCCACTAAAAAG+TGG - chr7.4:17572108-17572127 None:intergenic 45.0%
CTGTGCATGAATTGATTGGC+CGG + chr7.4:17571648-17571667 MS.gene39052:intron 45.0%
CTTAACCAGCTGACATGTCA+GGG - chr7.4:17572196-17572215 None:intergenic 45.0%
GATCCCATAACCAGTTTGGA+TGG - chr7.4:17574299-17574318 None:intergenic 45.0%
GGAATTCGTGTTTGTGGTGA+TGG + chr7.4:17571670-17571689 MS.gene39052:intron 45.0%
GTCGTTATGAAGCGCATCTA+TGG + chr7.4:17571504-17571523 MS.gene39052:CDS 45.0%
GTGCCCTCTTGATAGGAAAA+GGG + chr7.4:17572277-17572296 MS.gene39052:intron 45.0%
GTGTTGTAGGCTGTCAAAAG+TGG - chr7.4:17573590-17573609 None:intergenic 45.0%
TCACCACAAACACGAATTCC+CGG - chr7.4:17571670-17571689 None:intergenic 45.0%
TCTTAACCAGCTGACATGTC+AGG - chr7.4:17572197-17572216 None:intergenic 45.0%
TGAGACGATAGTGATCTTGC+AGG - chr7.4:17573014-17573033 None:intergenic 45.0%
TTAACCAGCTGACATGTCAG+GGG - chr7.4:17572195-17572214 None:intergenic 45.0%
! AAGGCCCTTTTCCTATCAAG+AGG - chr7.4:17572284-17572303 None:intergenic 45.0%
! AGGCCCTTTTCCTATCAAGA+GGG - chr7.4:17572283-17572302 None:intergenic 45.0%
! CAAGAGCATGCAAGAGAAAG+CGG + chr7.4:17573367-17573386 MS.gene39052:CDS 45.0%
! CAATTTGATGGATCCACACC+TGG - chr7.4:17572556-17572575 None:intergenic 45.0%
! GCACTGATGCTTCTGATCAA+AGG + chr7.4:17571400-17571419 MS.gene39052:intron 45.0%
! GGCATCTTGTATGGTTCTGT+CGG - chr7.4:17573263-17573282 None:intergenic 45.0%
! GTATGATGATGAGGAAGCAG+CGG + chr7.4:17571828-17571847 MS.gene39052:CDS 45.0%
! GTGTAGGAGAATGAGTTGAG+AGG + chr7.4:17574639-17574658 MS.gene39052:intron 45.0%
! TCTTGTATGGTTCTGTCGGT+TGG - chr7.4:17573259-17573278 None:intergenic 45.0%
! TGTGCATGAATTGATTGGCC+GGG + chr7.4:17571649-17571668 MS.gene39052:intron 45.0%
!! CAAGAGGGCACTGGATTTAA+TGG - chr7.4:17572268-17572287 None:intergenic 45.0%
!! CTCTGAAATATTGGGGTCCT+GGG + chr7.4:17571872-17571891 MS.gene39052:CDS 45.0%
!! GATCGACTTGGCATTGCAAT+GGG + chr7.4:17573503-17573522 MS.gene39052:CDS 45.0%
!! GTGGTGATGGCAGTATACTT+GGG + chr7.4:17571683-17571702 MS.gene39052:intron 45.0%
!! TCGCCGGTGTGTTTTTGATA+GGG + chr7.4:17571803-17571822 MS.gene39052:intron 45.0%
!! TGATCGACTTGGCATTGCAA+TGG + chr7.4:17573502-17573521 MS.gene39052:CDS 45.0%
!! TGTGGTGATGGCAGTATACT+TGG + chr7.4:17571682-17571701 MS.gene39052:intron 45.0%
!! TTTTCCTATCAAGAGGGCAC+TGG - chr7.4:17572277-17572296 None:intergenic 45.0%
!! TTTTTAGTGGATCTGGGAGC+TGG + chr7.4:17572109-17572128 MS.gene39052:intron 45.0%
AAGAATCGACACCCTGATGC+TGG + chr7.4:17573155-17573174 MS.gene39052:CDS 50.0%
AGAGTAGCTAGCTAGGTACC+TGG - chr7.4:17571219-17571238 None:intergenic 50.0%
ATGAGAGATGTCCAGAGAGC+AGG - chr7.4:17573632-17573651 None:intergenic 50.0%
CAACCTCAGCTGTACGAGAA+AGG - chr7.4:17573673-17573692 None:intergenic 50.0%
CAATGGTAGATCCTGCTCTC+TGG + chr7.4:17573618-17573637 MS.gene39052:CDS 50.0%
CAGAGAGCAGGATCTACCAT+TGG - chr7.4:17573620-17573639 None:intergenic 50.0%
CCAGCCATTCGACCATATGA+TGG - chr7.4:17572836-17572855 None:intergenic 50.0%
CCATACAGCCCCATAAAACC+TGG + chr7.4:17574599-17574618 MS.gene39052:intron 50.0%
CCATCATATGGTCGAATGGC+TGG + chr7.4:17572833-17572852 MS.gene39052:CDS 50.0%
CCGTGGCTGAAACATAGTGT+AGG - chr7.4:17574769-17574788 None:intergenic 50.0%
CGCCCCTATCAAAAACACAC+CGG - chr7.4:17571809-17571828 None:intergenic 50.0%
CTGGAGAAGTCCATCCAAAC+TGG + chr7.4:17574286-17574305 MS.gene39052:intron 50.0%
CTTTCTCGTACAGCTGAGGT+TGG + chr7.4:17573671-17573690 MS.gene39052:intron 50.0%
GATGGCAGCAATGATCGACT+TGG + chr7.4:17573491-17573510 MS.gene39052:CDS 50.0%
GGGAAGTTAATGAGAGTCCC+AGG - chr7.4:17571892-17571911 None:intergenic 50.0%
GTAGATGGAGCTGCGTTTAC+CGG - chr7.4:17571186-17571205 None:intergenic 50.0%
TAACCAGCTGACATGTCAGG+GGG - chr7.4:17572194-17572213 None:intergenic 50.0%
TATGTGGCGATGTTTGTCGC+CGG + chr7.4:17571787-17571806 MS.gene39052:intron 50.0%
! CAATGAGTTGGATCGTGGGA+AGG + chr7.4:17573445-17573464 MS.gene39052:CDS 50.0%
! GATAGGGGCGTATGATGATG+AGG + chr7.4:17571819-17571838 MS.gene39052:intron 50.0%
! GGGCCTTATCTAAGCACTTC+TGG + chr7.4:17572297-17572316 MS.gene39052:intron 50.0%
!! CCAGGTTTTATGGGGCTGTA+TGG - chr7.4:17574602-17574621 None:intergenic 50.0%
!! CGCCGGTGTGTTTTTGATAG+GGG + chr7.4:17571804-17571823 MS.gene39052:intron 50.0%
!! GCTCTGAAATATTGGGGTCC+TGG + chr7.4:17571871-17571890 MS.gene39052:CDS 50.0%
!! GTCGCCGGTGTGTTTTTGAT+AGG + chr7.4:17571802-17571821 MS.gene39052:intron 50.0%
AAACGCAGCTCCATCTACCG+TGG + chr7.4:17571188-17571207 MS.gene39052:CDS 55.0%
AGAAAGGCCAGCAGGAAGCA+TGG - chr7.4:17573657-17573676 None:intergenic 55.0%
AGTCGATGGGGGCCATCATA+TGG + chr7.4:17572821-17572840 MS.gene39052:intron 55.0%
CACACCTCCGCAAAGATGCA+AGG - chr7.4:17572423-17572442 None:intergenic 55.0%
CGCGCAGACTTGCCAGATAA+TGG - chr7.4:17572621-17572640 None:intergenic 55.0%
CTAGGTACCTGGTGACACCA+CGG - chr7.4:17571208-17571227 None:intergenic 55.0%
CTCATTCCCATGCTTCCTGC+TGG + chr7.4:17573647-17573666 MS.gene39052:CDS 55.0%
GCTTGATGCAGGAAGAGCAG+TGG + chr7.4:17572495-17572514 MS.gene39052:intron 55.0%
GGAGACATCAGAAGCAGTGG+CGG + chr7.4:17571058-17571077 MS.gene39052:CDS 55.0%
GGGGCCATCATATGGTCGAA+TGG + chr7.4:17572829-17572848 MS.gene39052:CDS 55.0%
TATCGTGGACTCTCCAGGTG+TGG + chr7.4:17572540-17572559 MS.gene39052:intron 55.0%
TGCGGAGACATCAGAAGCAG+TGG + chr7.4:17571055-17571074 MS.gene39052:CDS 55.0%
TGGCCGGGAATTCGTGTTTG+TGG + chr7.4:17571664-17571683 MS.gene39052:intron 55.0%
TGGCCTTTCTCGTACAGCTG+AGG + chr7.4:17573667-17573686 MS.gene39052:CDS 55.0%
TTGTGCAGCGGTCCTAACTC+TGG - chr7.4:17573284-17573303 None:intergenic 55.0%
TTTCCCCCTGACATGTCAGC+TGG + chr7.4:17572188-17572207 MS.gene39052:intron 55.0%
! GAAAGGCCAGCAGGAAGCAT+GGG - chr7.4:17573656-17573675 None:intergenic 55.0%
AAAATGCCTCCGTGTGCCGC+CGG + chr7.4:17571164-17571183 MS.gene39052:CDS 60.0%
CCTGGTGACACCACGGTAGA+TGG - chr7.4:17571201-17571220 None:intergenic 60.0%
CTCCGATCCAGGCAAGTCTG+CGG + chr7.4:17571037-17571056 MS.gene39052:CDS 60.0%
CTCCGCAGACTTGCCTGGAT+CGG - chr7.4:17571042-17571061 None:intergenic 60.0%
GACATCAGAAGCAGTGGCGG+CGG + chr7.4:17571061-17571080 MS.gene39052:CDS 60.0%
GATGGAGCTGCGTTTACCGG+CGG - chr7.4:17571183-17571202 None:intergenic 60.0%
GATGTCTCCGCAGACTTGCC+TGG - chr7.4:17571047-17571066 None:intergenic 60.0%
GCTGTACGAGAAAGGCCAGC+AGG - chr7.4:17573665-17573684 None:intergenic 60.0%
GCTTCGTCTTCCTCCGATCC+AGG + chr7.4:17571026-17571045 MS.gene39052:CDS 60.0%
!! CCATCTACCGTGGTGTCACC+AGG + chr7.4:17571198-17571217 MS.gene39052:CDS 60.0%
CGCAGACTTGCCTGGATCGG+AGG - chr7.4:17571039-17571058 None:intergenic 65.0%
CTGCGTTTACCGGCGGCACA+CGG - chr7.4:17571176-17571195 None:intergenic 65.0%
CGTTTACCGGCGGCACACGG+AGG - chr7.4:17571173-17571192 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 17571023 17574794 17571023 ID=MS.gene39052
chr7.4 mRNA 17571023 17574794 17571023 ID=MS.gene39052.t1;Parent=MS.gene39052
chr7.4 exon 17571023 17571219 17571023 ID=MS.gene39052.t1.exon1;Parent=MS.gene39052.t1
chr7.4 CDS 17571023 17571219 17571023 ID=cds.MS.gene39052.t1;Parent=MS.gene39052.t1
chr7.4 exon 17571490 17571572 17571490 ID=MS.gene39052.t1.exon2;Parent=MS.gene39052.t1
chr7.4 CDS 17571490 17571572 17571490 ID=cds.MS.gene39052.t1;Parent=MS.gene39052.t1
chr7.4 exon 17571696 17571704 17571696 ID=MS.gene39052.t1.exon3;Parent=MS.gene39052.t1
chr7.4 CDS 17571696 17571704 17571696 ID=cds.MS.gene39052.t1;Parent=MS.gene39052.t1
chr7.4 exon 17571824 17571912 17571824 ID=MS.gene39052.t1.exon4;Parent=MS.gene39052.t1
chr7.4 CDS 17571824 17571912 17571824 ID=cds.MS.gene39052.t1;Parent=MS.gene39052.t1
chr7.4 exon 17572364 17572437 17572364 ID=MS.gene39052.t1.exon5;Parent=MS.gene39052.t1
chr7.4 CDS 17572364 17572437 17572364 ID=cds.MS.gene39052.t1;Parent=MS.gene39052.t1
chr7.4 exon 17572506 17572556 17572506 ID=MS.gene39052.t1.exon6;Parent=MS.gene39052.t1
chr7.4 CDS 17572506 17572556 17572506 ID=cds.MS.gene39052.t1;Parent=MS.gene39052.t1
chr7.4 exon 17572823 17572884 17572823 ID=MS.gene39052.t1.exon7;Parent=MS.gene39052.t1
chr7.4 CDS 17572823 17572884 17572823 ID=cds.MS.gene39052.t1;Parent=MS.gene39052.t1
chr7.4 exon 17573054 17573688 17573054 ID=MS.gene39052.t1.exon8;Parent=MS.gene39052.t1
chr7.4 CDS 17573054 17573688 17573054 ID=cds.MS.gene39052.t1;Parent=MS.gene39052.t1
chr7.4 exon 17574705 17574794 17574705 ID=MS.gene39052.t1.exon9;Parent=MS.gene39052.t1
chr7.4 CDS 17574705 17574794 17574705 ID=cds.MS.gene39052.t1;Parent=MS.gene39052.t1
Gene Sequence

>MS.gene39052

ATGGCTTCGTCTTCCTCCGATCCAGGCAAGTCTGCGGAGACATCAGAAGCAGTGGCGGCGGCGAATGATCAGCTTTTACTGTACAGAGGATTGAAGAAAGCGAAGAAAGAGAGAGGTTGTACTGCTAAAGAACGAATCAGTAAAATGCCTCCGTGTGCCGCCGGTAAACGCAGCTCCATCTACCGTGGTGTCACCAGGTACCTAGCTAGCTACTCTTCAACTTCAATCAACTCGTTTTCCACAAGTTCTTATTAGATTTAGATTCAGTTTGGATTTGATTTTTGAGCTTCTCCGTTGAAATATGTTAAGGATCATCACTTATAAGTTTCACTTAATTAACTTAATTTCAATTTATTCTACAAGTTATTAACTTTGTCGCACTGATGCTTCTGATCAAAGGTTATTACTTATTAGTTAACATTGTTTGATTGTTTGTTACTAAATTTGGTGAATTGTGTGTGTATTAGGCATAGATGGACTGGTCGTTATGAAGCGCATCTATGGGATAAAAGTACATGGAATCAAAATCAGAATAAGAAAGGAAAACAAGGTTTGGACTGTTGAACATAAGTCAGGTTTAAGGTTTTGTGTAAAGATGAAATTGCTTATGTTTTTTGTTTTTGTGCTGTGCATGAATTGATTGGCCGGGAATTCGTGTTTGTGGTGATGGCAGTATACTTGGGTGAGTTTTCAATGTGATGCTCTCTTGTTATTCTTTTGTTCTGGTTTTTAATTGAATTTTTTAATGCATTGTTAATATTGGTTATGTGGCGATGTTTGTCGCCGGTGTGTTTTTGATAGGGGCGTATGATGATGAGGAAGCAGCGGCTAGAGCGTATGACCTTGCTGCTCTGAAATATTGGGGTCCTGGGACTCTCATTAACTTCCCAGTAAGATTATTGCTTGAATTGTTTTGTACTTAATTTGGAGACGGTTTGATTTGTTGCCTTAATTGAAATGTCATCTGGTTTTGTGATTCGTGTACTCCTTTTGTTTGATGAAAATTGTGGCCCCTCACGTCCTGCTTCATATTTTTCATCAAAAGGTTTTTTGTGAAATGACTAGAGTTTTTCTTTACCCATCCACTTTTTAGTGGATCTGGGAGCTGGTGACTCTAGAGTTACGTCCATTCTTTTATCTGTTAGTATTTATGATTATGATGTTTTTTCCCCCTGACATGTCAGCTGGTTAAGAATCATAAAATGGAAAATTTGGTTGGCAACTAGAGTTTCATATTTGACACCATTAAATCCAGTGCCCTCTTGATAGGAAAAGGGCCTTATCTAAGCACTTCTGGTAAATAGAGTAATTTTTATACCAAGTTTGATCTGTGTGTTGCAGGTGACTGATTATACAAGAGATCTCGAAGAAATGCAGAACGTTTCGAGAGAAGAATACCTTGCATCTTTGCGGAGGTGTGTATATCTCTCACAAAAATATTAGCTTGTAACCTATTGCTGCTTACGTGATATGCTTGATGCAGGAAGAGCAGTGGTTTTTCAAGAGGACTATCAAAATATCGTGGACTCTCCAGGTGTGGATCCATCAAATTGTTTTAGCAGAAATCGTCTGTCAATTAAATTCTTTTTTTATCTCCATTATCTGGCAAGTCTGCGCGTGTATTGCAAAATTGTATAGAGCTAATGATTCATTGACCAAGCTGGCTTGTCTTTCTCATCTTTACTGTGGAGTTACAGTTCTTGATCTGGTGTATCTGACATAGATTTATAGATTTTGACATAGATTTGATGCTAACTTGAACTATGCATTTCATTTTGCATGTGGTGGTATATAAATTAGTCGATGGGGGCCATCATATGGTCGAATGGCTGGATCTGATTACTTCAGTAGTATACATTACGGTACGTGGTAATCGAATTTTATGTCCAAGCTAATATTTTATTGAATGGAGTATATGAACCATGTTCATTTGTGCATCTTTGACGTGGAGAAAAAGTTATATTATTCAATTAATTTAAACTGTTTTACCTGCAAGATCACTATCGTCTCACCTTTTTACAAACATTGAAGGTATAGGGGATAATTCAGCTGCGGAAAGTGAATATGTTAGTGGTTTCTGCGTAGAAAGAAAGATTGATTTAACAAATCACATCAAATGGTGGGGATCTAATAAGAATCGACACCCTGATGCTGGAACAAGATTATCAGAAGAAAAGAAACATGGTTTTGCTGGAGATATTTACTGTGAACTTAAAACATTGGAACAGAAAGTCCAACCGACAGAACCATACAAGATGCCAGAGTTAGGACCGCTGCACAATGAGAAAAAACATAAAAGTTCTTCAATCTCTGCCTTAAGTATATTGTCACAGTCTGCTGCTTACAAGAGCATGCAAGAGAAAGCGGCAAAAAGACAGGAAAATAGCACTGATAATGACGAGAATGAAAACAAAAATATAGTCAATGAGTTGGATCGTGGGAAGGCAGTAGAGAAACCTTCAAATCATGATGGCAGCAATGATCGACTTGGCATTGCAATGGGAATGAGTGAGGCGTTGTCTCTTCAAAGAAATGTTTACCCATTGACATCATTCTTGTCAGCACCACTTTTGACAGCCTACAACACTGTTGATCCAATGGTAGATCCTGCTCTCTGGACATCTCTCATTCCCATGCTTCCTGCTGGCCTTTCTCGTACAGCTGAGGTTGGTATAATGACTAAAGTATTTTACTTTATTTACAACGAAGAAGATCACATGAAAATCTCATTTAACAATGCTAAAAAGGCTCAGTGAGTTACTTATAACAGTCTTCGTAATGATCTGCAAGACAAGTTTAATACTTTCATTTAATGCTTTTTATCTCTTGATTATTTAAGTTTAGTTAGCAAGACTCGATATAGTCTGCTTGAGTGTTTGTGCATCAATACGCTCTCACTGAATATTCTTTTAAGTGTTACATAATATAGCTTTTATTTTTACTTTTATGAGTCTGGTGATTGCATATTATGTTAACATGTTTATGAAGATATGTTTTCTTTTGCCATTAGACCAACATGATAGTGTTACTACTGTCAGCAAATTTATTCAGCCAATATTTTAAATTGGTTTATTCTGGGAGCTTCTCATTTATGGTTCTTTACTTGTGAAACACTTCCTTTAATTTTATAGATGCGAAGTTATACGAGAGAGCTTCTCAAAAAATTGAGATGCGCAAGTTAATTTCAACATATACAAAAAACTATTGTTTCATAAGTTCAGTTTTTTTAGATTCTTTTGATACTTACTTTTTCTTAAGTACTTCTGGAGAAGTCCATCCAAACTGGTTATGGGATCAATATAATTAATGCAACTTTAGGCCAAACAACATTTGCTGACGAGTCCATAATCATATCACATATTTCTGAACCTAATGTGAATGTTATCAGCTATTTTCTGAAAGTATAATGAAGCTAGGAAGTATAGAGCCAATAATTTTTCAAATTACAGTTTGAAGAATTTATTCAGGAAAAGCAGCCCTATAGTAGTTAAACTCTATCTGACAATAATAAGTTGGCAGGGACTATAATTGTTTAATTCAGAACCACTGGTTACACGAAACAATTAATATATATCTCCATACAGCCCCATAAAACCTGGTTTGTAAGGTTGAGTTAGTGTAGGAGAATGAGTTGAGAGGACTGTAAATGGTAGGATAAAAATTGTTTATCACATCTTTGTAGGTTCACTTTACCAAGAACATTGGGATTAATGTGCAGGTTACAAAGACGGAGCCCGATTCAACCTACACTATGTTTCAGCCACGGGAGTGA
Protein sequence

>MS.gene39052.t1

MASSSSDPGKSAETSEAVAAANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGLSKYRGLSSRWGPSYGRMAGSDYFSSIHYGIGDNSAAESEYVSGFCVERKIDLTNHIKWWGSNKNRHPDAGTRLSEEKKHGFAGDIYCELKTLEQKVQPTEPYKMPELGPLHNEKKHKSSSISALSILSQSAAYKSMQEKAAKRQENSTDNDENENKNIVNELDRGKAVEKPSNHDGSNDRLGIAMGMSEALSLQRNVYPLTSFLSAPLLTAYNTVDPMVDPALWTSLIPMLPAGLSRTAEVHFTKNIGINVQVTKTEPDSTYTMFQPRE