Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39835.t1 | XP_003617070.1 | 99 | 310 | 3 | 0 | 1 | 310 | 1 | 310 | 3.20E-179 | 637.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39835.t1 | Q9M2U2 | 82.3 | 311 | 53 | 2 | 1 | 310 | 1 | 310 | 3.8e-152 | 538.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39835.t1 | B7FIH8 | 99.0 | 310 | 3 | 0 | 1 | 310 | 1 | 310 | 2.3e-179 | 637.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04920 | MS.gene39835 | -0.80418 | 2.44E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene39835 | -0.801118 | 1.05E-48 | -1.69E-46 |
| MS.gene050081 | MS.gene39835 | -0.81399 | 1.94E-51 | -1.69E-46 |
| MS.gene050825 | MS.gene39835 | 0.811828 | 5.76E-51 | -1.69E-46 |
| MS.gene051019 | MS.gene39835 | -0.824851 | 6.45E-54 | -1.69E-46 |
| MS.gene052579 | MS.gene39835 | -0.827802 | 1.28E-54 | -1.69E-46 |
| MS.gene053272 | MS.gene39835 | 0.835621 | 1.51E-56 | -1.69E-46 |
| MS.gene055150 | MS.gene39835 | -0.821515 | 3.88E-53 | -1.69E-46 |
| MS.gene056693 | MS.gene39835 | -0.813012 | 3.17E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene39835 | -0.802278 | 6.05E-49 | -1.69E-46 |
| MS.gene057684 | MS.gene39835 | 0.819113 | 1.38E-52 | -1.69E-46 |
| MS.gene059146 | MS.gene39835 | -0.801216 | 1.00E-48 | -1.69E-46 |
| MS.gene05952 | MS.gene39835 | -0.800265 | 1.56E-48 | -1.69E-46 |
| MS.gene05985 | MS.gene39835 | 0.851926 | 6.46E-61 | -1.69E-46 |
| MS.gene059901 | MS.gene39835 | 0.839437 | 1.59E-57 | -1.69E-46 |
| MS.gene060338 | MS.gene39835 | -0.819396 | 1.19E-52 | -1.69E-46 |
| MS.gene060512 | MS.gene39835 | -0.802639 | 5.10E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene39835 | -0.822998 | 1.75E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene39835 | -0.830487 | 2.86E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39835.t1 | MTR_5g087590 | 99.032 | 310 | 3 | 0 | 1 | 310 | 1 | 310 | 0.0 | 639 |
| MS.gene39835.t1 | MTR_6g043740 | 29.070 | 172 | 113 | 4 | 139 | 309 | 105 | 268 | 4.94e-13 | 68.6 |
| MS.gene39835.t1 | MTR_6g037340 | 30.126 | 239 | 133 | 9 | 61 | 288 | 43 | 258 | 2.70e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39835.t1 | AT3G55360 | 82.315 | 311 | 53 | 2 | 1 | 310 | 1 | 310 | 0.0 | 541 |
| MS.gene39835.t1 | AT5G16010 | 29.231 | 130 | 90 | 2 | 139 | 267 | 102 | 230 | 3.46e-12 | 65.9 |
Find 89 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTACGCCAAACGAATTC+TGG | 0.194582 | 5.4:-68889837 | MS.gene39835:CDS |
| TTCATTTGAAGGTCACTTAC+AGG | 0.239953 | 5.4:+68889689 | None:intergenic |
| CTGCCTTGATGGATGCTTCT+TGG | 0.246723 | 5.4:+68890147 | None:intergenic |
| ATGAAGATAGGCTTTGGATT+TGG | 0.247840 | 5.4:-68889671 | MS.gene39835:CDS |
| TCCGCAACTGTGCTTATTAC+TGG | 0.262844 | 5.4:-68889760 | MS.gene39835:CDS |
| TGAAGATAGGCTTTGGATTT+GGG | 0.293757 | 5.4:-68889670 | MS.gene39835:CDS |
| AGTGGAAGAGAGATTGTTAA+AGG | 0.294260 | 5.4:-68891348 | MS.gene39835:CDS |
| GTCACTTACAGGGGTGTATA+GGG | 0.307392 | 5.4:+68889700 | None:intergenic |
| TGAAGGTCACTGTGGTTTCT+AGG | 0.313807 | 5.4:-68891371 | MS.gene39835:CDS |
| GGTCACTTACAGGGGTGTAT+AGG | 0.327530 | 5.4:+68889699 | None:intergenic |
| GTCCTTGAACGTTACAGTTA+AGG | 0.339195 | 5.4:+68890027 | None:intergenic |
| GGCTACTGTAGCAGATTTGC+AGG | 0.343092 | 5.4:-68891115 | MS.gene39835:CDS |
| CTTCAAATGAAGATAGGCTT+TGG | 0.359794 | 5.4:-68889677 | MS.gene39835:CDS |
| TGTGCTTATTACTGGACATT+TGG | 0.362923 | 5.4:-68889752 | MS.gene39835:CDS |
| GAAGATTCCTCAGTATAATA+TGG | 0.369628 | 5.4:+68889618 | None:intergenic |
| AAATGTTTCCAGAATTCGTT+TGG | 0.370339 | 5.4:+68889829 | None:intergenic |
| ATTGCAACGCAAACCATTGC+CGG | 0.389032 | 5.4:-68889488 | MS.gene39835:CDS |
| CAAAGCCTATCTTCATTTGA+AGG | 0.389390 | 5.4:+68889678 | None:intergenic |
| CCGAAATACTCGTAGACAAC+GGG | 0.390772 | 5.4:+68889920 | None:intergenic |
| CCCGTTGTCTACGAGTATTT+CGG | 0.392516 | 5.4:-68889920 | MS.gene39835:CDS |
| CCAGAATTCGTTTGGCGTAA+TGG | 0.393749 | 5.4:+68889837 | None:intergenic |
| CTTGACACTTCCTGTCCAAC+CGG | 0.402666 | 5.4:-68890122 | MS.gene39835:CDS |
| GTGTACCTGCAGTTGTTTGA+TGG | 0.409094 | 5.4:-68888743 | MS.gene39835:intron |
| AACCTTAACTGTAACGTTCA+AGG | 0.415365 | 5.4:-68890029 | MS.gene39835:CDS |
| AGGAATCTTCGTGGACCTGC+TGG | 0.422036 | 5.4:-68889605 | MS.gene39835:CDS |
| TCCTTTGATCCCGGTTGGAC+AGG | 0.438015 | 5.4:+68890112 | None:intergenic |
| GGCTGGGGCTCCTACAGAAA+TGG | 0.439371 | 5.4:+68888674 | None:intergenic |
| AGTGACCTTCAAATGAAGAT+AGG | 0.453400 | 5.4:-68889683 | MS.gene39835:CDS |
| ACAGAGATTTACCAGTGGTT+GGG | 0.462151 | 5.4:-68889518 | MS.gene39835:CDS |
| AGTGTCAAGCGCTGCCTTGA+TGG | 0.477346 | 5.4:+68890136 | None:intergenic |
| TGATATCCACCTTCTCCAGC+AGG | 0.491305 | 5.4:+68889590 | None:intergenic |
| TCCTGTCCAACCGGGATCAA+AGG | 0.492864 | 5.4:-68890113 | MS.gene39835:CDS |
| AACAGAGATTTACCAGTGGT+TGG | 0.493932 | 5.4:-68889519 | MS.gene39835:CDS |
| GACGGCAAGAAATATATAAC+CGG | 0.506359 | 5.4:+68889469 | None:intergenic |
| ACTGTAACGTTCAAGGACTT+AGG | 0.507815 | 5.4:-68890022 | MS.gene39835:CDS |
| GGCCGAGGTACCCTCGTCGG+TGG | 0.508785 | 5.4:-68888709 | MS.gene39835:CDS |
| AAGAAATATATAACCGGCAA+TGG | 0.521615 | 5.4:+68889475 | None:intergenic |
| GTTGCGGAAAACATTGGAAA+GGG | 0.523442 | 5.4:+68889775 | None:intergenic |
| TACATGGCATATGTCTGCAC+AGG | 0.523747 | 5.4:+68889872 | None:intergenic |
| CAGTTGTTTGATGGAAAGGA+AGG | 0.528249 | 5.4:-68888734 | MS.gene39835:CDS |
| GATATTGCCTCCATTTCTGT+AGG | 0.528268 | 5.4:-68888684 | None:intergenic |
| TCATTTGAAGGTCACTTACA+GGG | 0.529579 | 5.4:+68889690 | None:intergenic |
| AGACATATGCCATGTACTAT+TGG | 0.530822 | 5.4:-68889865 | MS.gene39835:CDS |
| CTTCGTGGACCTGCTGGAGA+AGG | 0.532866 | 5.4:-68889599 | MS.gene39835:CDS |
| AAAACACAGGCGCTTGAAGA+AGG | 0.542376 | 5.4:-68889414 | MS.gene39835:intron |
| TACGAGTATTTCGGCTACAA+AGG | 0.543041 | 5.4:-68889911 | MS.gene39835:CDS |
| CCTGCAGTTGTTTGATGGAA+AGG | 0.543183 | 5.4:-68888738 | MS.gene39835:intron |
| GTCACTGTGGTTTCTAGGAG+TGG | 0.545999 | 5.4:-68891366 | MS.gene39835:CDS |
| ATGGAAAGGAAGGGAGGCCG+AGG | 0.552898 | 5.4:-68888724 | MS.gene39835:CDS |
| TGGAAAGGGGCGAAGTTGCA+TGG | 0.556188 | 5.4:+68889789 | None:intergenic |
| AGCACAGTTGCGGAAAACAT+TGG | 0.558230 | 5.4:+68889769 | None:intergenic |
| CGTGGACCTGCTGGAGAAGG+TGG | 0.567577 | 5.4:-68889596 | MS.gene39835:CDS |
| CAATGTTGAAGCCCAACCAC+TGG | 0.568163 | 5.4:+68889507 | None:intergenic |
| ACGGGGAAGTAATAGAAGAC+TGG | 0.576291 | 5.4:+68889938 | None:intergenic |
| ATTATACTGAGGAATCTTCG+TGG | 0.579382 | 5.4:-68889614 | MS.gene39835:CDS |
| GGAAGAGAGATTGTTAAAGG+TGG | 0.583648 | 5.4:-68891345 | MS.gene39835:CDS |
| AGTTGCGGAAAACATTGGAA+AGG | 0.592239 | 5.4:+68889774 | None:intergenic |
| ACCCACCGACGAGGGTACCT+CGG | 0.593529 | 5.4:+68888707 | None:intergenic |
| TCCAGTAATAAGCACAGTTG+CGG | 0.593571 | 5.4:+68889759 | None:intergenic |
| GCCGAGGTACCCTCGTCGGT+GGG | 0.594134 | 5.4:-68888708 | MS.gene39835:CDS |
| GGCAATATCACCCACCGACG+AGG | 0.596544 | 5.4:+68888698 | None:intergenic |
| TTGACACTTCCTGTCCAACC+GGG | 0.596671 | 5.4:-68890121 | MS.gene39835:CDS |
| TTTATTGCCATATTATACTG+AGG | 0.605844 | 5.4:-68889625 | MS.gene39835:CDS |
| CAGCCAAGAAGCATCCATCA+AGG | 0.606217 | 5.4:-68890150 | MS.gene39835:CDS |
| AGTCTCGATGACTATACAAG+TGG | 0.608378 | 5.4:-68890061 | MS.gene39835:CDS |
| CATTTGAAGGTCACTTACAG+GGG | 0.612750 | 5.4:+68889691 | None:intergenic |
| ATGGAAACACCAATAGTACA+TGG | 0.615120 | 5.4:+68889856 | None:intergenic |
| ACTGGGCTCTTGCAAAACAC+AGG | 0.618820 | 5.4:-68889427 | MS.gene39835:CDS |
| TCACTTACAGGGGTGTATAG+GGG | 0.622126 | 5.4:+68889701 | None:intergenic |
| AAGACTGGATAGAGAAGCAA+CGG | 0.622613 | 5.4:+68889953 | None:intergenic |
| GGTCATGATAAAAGCAGCGA+CGG | 0.625472 | 5.4:+68889451 | None:intergenic |
| AGTTGTTTGATGGAAAGGAA+GGG | 0.625743 | 5.4:-68888733 | MS.gene39835:CDS |
| TGGGGCTCCTACAGAAATGG+AGG | 0.630314 | 5.4:+68888677 | None:intergenic |
| GCCGAAATACTCGTAGACAA+CGG | 0.644557 | 5.4:+68889919 | None:intergenic |
| TTACAGGGGTGTATAGGGGA+TGG | 0.652446 | 5.4:+68889705 | None:intergenic |
| GGAGGCCGAGGTACCCTCGT+CGG | 0.660981 | 5.4:-68888712 | MS.gene39835:CDS |
| TGTTTGATGGAAAGGAAGGG+AGG | 0.665428 | 5.4:-68888730 | MS.gene39835:CDS |
| AGCGTACGGTAAGAAACTTG+TGG | 0.676112 | 5.4:+68889998 | None:intergenic |
| TTGCGGAAAACATTGGAAAG+GGG | 0.678424 | 5.4:+68889776 | None:intergenic |
| TACTGTAGCAGATTTGCAGG+AGG | 0.680029 | 5.4:-68891112 | MS.gene39835:CDS |
| GCAATATCACCCACCGACGA+GGG | 0.681535 | 5.4:+68888699 | None:intergenic |
| ACATGGCATATGTCTGCACA+GGG | 0.710473 | 5.4:+68889873 | None:intergenic |
| TATTGAAGAGAAAGCCACGT+GGG | 0.722862 | 5.4:+68889564 | None:intergenic |
| CGAAATACTCGTAGACAACG+GGG | 0.728914 | 5.4:+68889921 | None:intergenic |
| TGGCATATGTCTGCACAGGG+TGG | 0.739067 | 5.4:+68889876 | None:intergenic |
| TTTGAAGATGAAGGTCACTG+TGG | 0.749871 | 5.4:-68891379 | None:intergenic |
| ATACAACAGAGATTTACCAG+TGG | 0.769592 | 5.4:-68889523 | MS.gene39835:CDS |
| ATATTGAAGAGAAAGCCACG+TGG | 0.769930 | 5.4:+68889563 | None:intergenic |
| GGTGGATATCAAATCCCACG+TGG | 0.798768 | 5.4:-68889578 | MS.gene39835:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAAAATAAGCTAAAAA+TGG | + | chr5.4:68890868-68890887 | None:intergenic | 10.0% |
| !!! | ATAGGAAATAAATTATATTT+TGG | - | chr5.4:68888852-68888871 | MS.gene39835:intron | 10.0% |
| !! | ACAAACTGATTAAATATTTA+TGG | + | chr5.4:68890990-68891009 | None:intergenic | 15.0% |
| !! | ATTAACAATTAAAATATGCA+AGG | + | chr5.4:68891277-68891296 | None:intergenic | 15.0% |
| !! | GTATAACAAAAAATAAAATG+AGG | + | chr5.4:68890926-68890945 | None:intergenic | 15.0% |
| !! | TTTATATTGTGAAAAAAAGT+GGG | + | chr5.4:68889436-68889455 | None:intergenic | 15.0% |
| !!! | TTTTATATTGTGAAAAAAAG+TGG | + | chr5.4:68889437-68889456 | None:intergenic | 15.0% |
| !! | AAAAACAACTCTATAAATCA+TGG | + | chr5.4:68888906-68888925 | None:intergenic | 20.0% |
| !! | ATAAAATGATCTTGAAGTTT+GGG | - | chr5.4:68889451-68889470 | MS.gene39835:CDS | 20.0% |
| !! | ATGCAAAAGAATAACAATAT+TGG | + | chr5.4:68891253-68891272 | None:intergenic | 20.0% |
| !! | TAAGAAAGCCATAAAATAAT+AGG | + | chr5.4:68889770-68889789 | None:intergenic | 20.0% |
| !! | TATAAAATGATCTTGAAGTT+TGG | - | chr5.4:68889450-68889469 | MS.gene39835:CDS | 20.0% |
| !!! | AACTGTTTGATTTTAAATTG+AGG | - | chr5.4:68891047-68891066 | MS.gene39835:intron | 20.0% |
| !!! | ATCCAATTCCTATTATTTTA+TGG | - | chr5.4:68889759-68889778 | MS.gene39835:CDS | 20.0% |
| !!! | CTTTTTTTCTTTGAGTATTT+GGG | - | chr5.4:68890080-68890099 | MS.gene39835:CDS | 20.0% |
| !!! | TGTTTGTTTTTGTCATAAAA+GGG | - | chr5.4:68888804-68888823 | MS.gene39835:intron | 20.0% |
| !!! | TTTTTGTAATTCAAAACAAC+AGG | + | chr5.4:68889975-68889994 | None:intergenic | 20.0% |
| !!! | TTTTTTTCTTTGAGTATTTG+GGG | - | chr5.4:68890081-68890100 | MS.gene39835:CDS | 20.0% |
| !!! | TTTTTTTTTTTTTTTGCCAC+AGG | - | chr5.4:68888921-68888940 | MS.gene39835:intron | 20.0% |
| ! | AGCCATAAAATAATAGGAAT+TGG | + | chr5.4:68889764-68889783 | None:intergenic | 25.0% |
| ! | AGCTTATATAAAGACCTATT+TGG | - | chr5.4:68890755-68890774 | MS.gene39835:intron | 25.0% |
| ! | TAAGTGTGATGTTTATTGTT+TGG | - | chr5.4:68891144-68891163 | MS.gene39835:intron | 25.0% |
| ! | TCTGCAATCCAATAAAAATT+GGG | + | chr5.4:68889583-68889602 | None:intergenic | 25.0% |
| ! | TTAGAATGAAAGTTTCTTCT+CGG | - | chr5.4:68889483-68889502 | MS.gene39835:CDS | 25.0% |
| ! | TTAGTGAACTACAAAAGAAA+AGG | + | chr5.4:68890681-68890700 | None:intergenic | 25.0% |
| ! | TTCTGCAATCCAATAAAAAT+TGG | + | chr5.4:68889584-68889603 | None:intergenic | 25.0% |
| ! | TTTATTGCCATATTATACTG+AGG | - | chr5.4:68890432-68890451 | MS.gene39835:intron | 25.0% |
| !! | ACAGTTAACCCAATTTTTAT+TGG | - | chr5.4:68889572-68889591 | MS.gene39835:CDS | 25.0% |
| !! | GTTTTCGCTAAAAACTATTT+TGG | + | chr5.4:68890896-68890915 | None:intergenic | 25.0% |
| !!! | CATATTTTTTCTTTTGAGAG+AGG | + | chr5.4:68889806-68889825 | None:intergenic | 25.0% |
| !!! | GATTTCTTAGGTTGATTTAT+AGG | - | chr5.4:68888834-68888853 | MS.gene39835:intron | 25.0% |
| !!! | GCTTTTTTTCTTTGAGTATT+TGG | - | chr5.4:68890079-68890098 | MS.gene39835:CDS | 25.0% |
| !!! | GTGTTTGTTTTTGTCATAAA+AGG | - | chr5.4:68888803-68888822 | MS.gene39835:intron | 25.0% |
| !!! | TTAACCCACTTTTTGTATTT+TGG | - | chr5.4:68889516-68889535 | MS.gene39835:CDS | 25.0% |
| AAAAAAAGTGGGACTTATGA+TGG | + | chr5.4:68889425-68889444 | None:intergenic | 30.0% | |
| AAAAAAGTGGGACTTATGAT+GGG | + | chr5.4:68889424-68889443 | None:intergenic | 30.0% | |
| AAATGTTTCCAGAATTCGTT+TGG | + | chr5.4:68890231-68890250 | None:intergenic | 30.0% | |
| AACAGATTTCCAAACACAAT+CGG | + | chr5.4:68889195-68889214 | None:intergenic | 30.0% | |
| AAGAAATATATAACCGGCAA+TGG | + | chr5.4:68890585-68890604 | None:intergenic | 30.0% | |
| AATAAGCTAAAAATGGCTGA+TGG | + | chr5.4:68890861-68890880 | None:intergenic | 30.0% | |
| ACAGACCAAAATACAAAAAG+TGG | + | chr5.4:68889524-68889543 | None:intergenic | 30.0% | |
| CAAATCACGTTAATGAGTTA+TGG | + | chr5.4:68889871-68889890 | None:intergenic | 30.0% | |
| CAGACCAAAATACAAAAAGT+GGG | + | chr5.4:68889523-68889542 | None:intergenic | 30.0% | |
| CATAAGCGCTTATCATATAA+GGG | + | chr5.4:68890967-68890986 | None:intergenic | 30.0% | |
| GAACTACAAAAGAAAAGGTA+AGG | + | chr5.4:68890676-68890695 | None:intergenic | 30.0% | |
| GAAGATTCCTCAGTATAATA+TGG | + | chr5.4:68890442-68890461 | None:intergenic | 30.0% | |
| TAGTTCACTAATTCAGTCTA+TGG | - | chr5.4:68890690-68890709 | MS.gene39835:intron | 30.0% | |
| TTAATCTTGCATCTTGTCTT+TGG | - | chr5.4:68891292-68891311 | MS.gene39835:intron | 30.0% | |
| TTGAAATTGTTTCCAACCTT+GGG | - | chr5.4:68889161-68889180 | MS.gene39835:intron | 30.0% | |
| TTGGATGAAATGAATTGAAC+TGG | + | chr5.4:68889745-68889764 | None:intergenic | 30.0% | |
| ! | AACTAAATTTGGTTCATGTG+TGG | - | chr5.4:68891178-68891197 | MS.gene39835:intron | 30.0% |
| ! | ACTCAAAGAAAAAAAGCGTA+CGG | + | chr5.4:68890076-68890095 | None:intergenic | 30.0% |
| !! | GAGGATTTTGAAAGTTTTGT+CGG | - | chr5.4:68891066-68891085 | MS.gene39835:intron | 30.0% |
| !!! | AAGGGTAGTTTTGATTTCTT+AGG | - | chr5.4:68888822-68888841 | MS.gene39835:intron | 30.0% |
| AAAAAGTGGGACTTATGATG+GGG | + | chr5.4:68889423-68889442 | None:intergenic | 35.0% | |
| AACCTTAACTGTAACGTTCA+AGG | - | chr5.4:68890028-68890047 | MS.gene39835:CDS | 35.0% | |
| ACTGACATTTAAATGTGAGG+TGG | + | chr5.4:68889285-68889304 | None:intergenic | 35.0% | |
| AGACATATGCCATGTACTAT+TGG | - | chr5.4:68890192-68890211 | MS.gene39835:intron | 35.0% | |
| AGTGACCTTCAAATGAAGAT+AGG | - | chr5.4:68890374-68890393 | MS.gene39835:intron | 35.0% | |
| AGTGGAAGAGAGATTGTTAA+AGG | - | chr5.4:68888709-68888728 | MS.gene39835:CDS | 35.0% | |
| AGTTGTTTGATGGAAAGGAA+GGG | - | chr5.4:68891324-68891343 | MS.gene39835:intron | 35.0% | |
| ATACAACAGAGATTTACCAG+TGG | - | chr5.4:68890534-68890553 | MS.gene39835:intron | 35.0% | |
| ATCAAAGGCTTATGTCTTGA+TGG | - | chr5.4:68889065-68889084 | MS.gene39835:intron | 35.0% | |
| ATGGAAACACCAATAGTACA+TGG | + | chr5.4:68890204-68890223 | None:intergenic | 35.0% | |
| ATTATACTGAGGAATCTTCG+TGG | - | chr5.4:68890443-68890462 | MS.gene39835:intron | 35.0% | |
| CAAAGCCTATCTTCATTTGA+AGG | + | chr5.4:68890382-68890401 | None:intergenic | 35.0% | |
| CGCTTATCATATAAGGGTTT+AGG | + | chr5.4:68890961-68890980 | None:intergenic | 35.0% | |
| CTCAAACAAGTCATCCAAAT+AGG | + | chr5.4:68890772-68890791 | None:intergenic | 35.0% | |
| CTGGATGAAATGAATTGAAC+TGG | + | chr5.4:68889632-68889651 | None:intergenic | 35.0% | |
| CTTCAAATGAAGATAGGCTT+TGG | - | chr5.4:68890380-68890399 | MS.gene39835:intron | 35.0% | |
| CTTGCTAGGTGAACTAAATT+TGG | - | chr5.4:68891167-68891186 | MS.gene39835:intron | 35.0% | |
| GAACACTTACGCATCATATT+TGG | + | chr5.4:68891013-68891032 | None:intergenic | 35.0% | |
| GACGGCAAGAAATATATAAC+CGG | + | chr5.4:68890591-68890610 | None:intergenic | 35.0% | |
| GCAAATAAACCGATTGTGTT+TGG | - | chr5.4:68889183-68889202 | MS.gene39835:intron | 35.0% | |
| GCATAAGCGCTTATCATATA+AGG | + | chr5.4:68890968-68890987 | None:intergenic | 35.0% | |
| GCCTTTGATCAACTTAACTT+CGG | + | chr5.4:68889054-68889073 | None:intergenic | 35.0% | |
| GCGTAAGTGTTCATATGATA+TGG | - | chr5.4:68891021-68891040 | MS.gene39835:intron | 35.0% | |
| GTGACTGACATTTAAATGTG+AGG | + | chr5.4:68889288-68889307 | None:intergenic | 35.0% | |
| GTTGAAATTGTTTCCAACCT+TGG | - | chr5.4:68889160-68889179 | MS.gene39835:intron | 35.0% | |
| GTTGGAAACAATTTCAACAG+AGG | + | chr5.4:68889158-68889177 | None:intergenic | 35.0% | |
| TCATTTGAAGGTCACTTACA+GGG | + | chr5.4:68890370-68890389 | None:intergenic | 35.0% | |
| TGTGCTTATTACTGGACATT+TGG | - | chr5.4:68890305-68890324 | MS.gene39835:intron | 35.0% | |
| TTCATTTGAAGGTCACTTAC+AGG | + | chr5.4:68890371-68890390 | None:intergenic | 35.0% | |
| ! | GTGTTTGGAAATCCTTTTGA+GGG | + | chr5.4:68889401-68889420 | None:intergenic | 35.0% |
| ! | TGCTTTTATCATGACCAACT+GGG | - | chr5.4:68890613-68890632 | MS.gene39835:intron | 35.0% |
| ! | TTGCAGCTTTGTGAAAATCA+CGG | + | chr5.4:68889310-68889329 | None:intergenic | 35.0% |
| !! | ACCGAAGTTAAGTTGATCAA+AGG | - | chr5.4:68889050-68889069 | MS.gene39835:intron | 35.0% |
| !! | ATGAAGATAGGCTTTGGATT+TGG | - | chr5.4:68890386-68890405 | MS.gene39835:intron | 35.0% |
| !! | TGAAGATAGGCTTTGGATTT+GGG | - | chr5.4:68890387-68890406 | MS.gene39835:intron | 35.0% |
| !! | TGTTTATTGTTTGGCTTGCT+AGG | - | chr5.4:68891153-68891172 | MS.gene39835:intron | 35.0% |
| AACAGAGATTTACCAGTGGT+TGG | - | chr5.4:68890538-68890557 | MS.gene39835:intron | 40.0% | |
| AAGACTGGATAGAGAAGCAA+CGG | + | chr5.4:68890107-68890126 | None:intergenic | 40.0% | |
| ACAGAGATTTACCAGTGGTT+GGG | - | chr5.4:68890539-68890558 | MS.gene39835:intron | 40.0% | |
| ACTGTAACGTTCAAGGACTT+AGG | - | chr5.4:68890035-68890054 | MS.gene39835:CDS | 40.0% | |
| AGTCTACTTCATCTACAGAC+TGG | + | chr5.4:68889538-68889557 | None:intergenic | 40.0% | |
| AGTCTCGATGACTATACAAG+TGG | - | chr5.4:68889996-68890015 | MS.gene39835:CDS | 40.0% | |
| AGTTGCGGAAAACATTGGAA+AGG | + | chr5.4:68890286-68890305 | None:intergenic | 40.0% | |
| ATATTGAAGAGAAAGCCACG+TGG | + | chr5.4:68890497-68890516 | None:intergenic | 40.0% | |
| CAATCCACTAAGCATGTGTT+TGG | - | chr5.4:68889241-68889260 | MS.gene39835:intron | 40.0% | |
| CAGTTGTTTGATGGAAAGGA+AGG | - | chr5.4:68891323-68891342 | MS.gene39835:intron | 40.0% | |
| CATTTGAAGGTCACTTACAG+GGG | + | chr5.4:68890369-68890388 | None:intergenic | 40.0% | |
| GACATTTAAATGTGAGGTGG+AGG | + | chr5.4:68889282-68889301 | None:intergenic | 40.0% | |
| GGAAGAGAGATTGTTAAAGG+TGG | - | chr5.4:68888712-68888731 | MS.gene39835:CDS | 40.0% | |
| GTATGTGTATGTCTGTCTCT+AGG | - | chr5.4:68889833-68889852 | MS.gene39835:CDS | 40.0% | |
| GTCCTTGAACGTTACAGTTA+AGG | + | chr5.4:68890033-68890052 | None:intergenic | 40.0% | |
| GTTGCGGAAAACATTGGAAA+GGG | + | chr5.4:68890285-68890304 | None:intergenic | 40.0% | |
| TACGAGTATTTCGGCTACAA+AGG | - | chr5.4:68890146-68890165 | MS.gene39835:CDS | 40.0% | |
| TATTGAAGAGAAAGCCACGT+GGG | + | chr5.4:68890496-68890515 | None:intergenic | 40.0% | |
| TCCAGTAATAAGCACAGTTG+CGG | + | chr5.4:68890301-68890320 | None:intergenic | 40.0% | |
| TTGCGGAAAACATTGGAAAG+GGG | + | chr5.4:68890284-68890303 | None:intergenic | 40.0% | |
| TTTAAATGTGAGGTGGAGGT+AGG | + | chr5.4:68889278-68889297 | None:intergenic | 40.0% | |
| ! | AATTTGGTTCATGTGTGGCT+TGG | - | chr5.4:68891183-68891202 | MS.gene39835:intron | 40.0% |
| ! | ACAATCGGTTTATTTGCCCA+AGG | + | chr5.4:68889180-68889199 | None:intergenic | 40.0% |
| ! | CAAACACATGCTTAGTGGAT+TGG | + | chr5.4:68889243-68889262 | None:intergenic | 40.0% |
| ! | GGTGTTTGGAAATCCTTTTG+AGG | + | chr5.4:68889402-68889421 | None:intergenic | 40.0% |
| !! | CTGCTTTTATCATGACCAAC+TGG | - | chr5.4:68890612-68890631 | MS.gene39835:intron | 40.0% |
| !! | TAGCTTTGAGATCCCTCAAA+AGG | - | chr5.4:68889386-68889405 | MS.gene39835:intron | 40.0% |
| AAAACACAGGCGCTTGAAGA+AGG | - | chr5.4:68890643-68890662 | MS.gene39835:intron | 45.0% | |
| AAATCTGCTACAGTAGCCTG+TGG | + | chr5.4:68888940-68888959 | None:intergenic | 45.0% | |
| ACATGGCATATGTCTGCACA+GGG | + | chr5.4:68890187-68890206 | None:intergenic | 45.0% | |
| ACGGGGAAGTAATAGAAGAC+TGG | + | chr5.4:68890122-68890141 | None:intergenic | 45.0% | |
| AGCACAGTTGCGGAAAACAT+TGG | + | chr5.4:68890291-68890310 | None:intergenic | 45.0% | |
| AGCGTACGGTAAGAAACTTG+TGG | + | chr5.4:68890062-68890081 | None:intergenic | 45.0% | |
| ATTGCAACGCAAACCATTGC+CGG | - | chr5.4:68890569-68890588 | MS.gene39835:intron | 45.0% | |
| CCAGAATTCGTTTGGCGTAA+TGG | + | chr5.4:68890223-68890242 | None:intergenic | 45.0% | |
| CCATTACGCCAAACGAATTC+TGG | - | chr5.4:68890220-68890239 | MS.gene39835:intron | 45.0% | |
| CCCGTTGTCTACGAGTATTT+CGG | - | chr5.4:68890137-68890156 | MS.gene39835:CDS | 45.0% | |
| CCGAAATACTCGTAGACAAC+GGG | + | chr5.4:68890140-68890159 | None:intergenic | 45.0% | |
| CCTGCAGTTGTTTGATGGAA+AGG | - | chr5.4:68891319-68891338 | MS.gene39835:intron | 45.0% | |
| CCTTTCCATCAAACAACTGC+AGG | + | chr5.4:68891322-68891341 | None:intergenic | 45.0% | |
| CGAAATACTCGTAGACAACG+GGG | + | chr5.4:68890139-68890158 | None:intergenic | 45.0% | |
| GCCGAAATACTCGTAGACAA+CGG | + | chr5.4:68890141-68890160 | None:intergenic | 45.0% | |
| GCTACCAAACACATGCTTAG+TGG | + | chr5.4:68889248-68889267 | None:intergenic | 45.0% | |
| GGTCATGATAAAAGCAGCGA+CGG | + | chr5.4:68890609-68890628 | None:intergenic | 45.0% | |
| GTGTACCTGCAGTTGTTTGA+TGG | - | chr5.4:68891314-68891333 | MS.gene39835:intron | 45.0% | |
| TACATGGCATATGTCTGCAC+AGG | + | chr5.4:68890188-68890207 | None:intergenic | 45.0% | |
| TACTGTAGCAGATTTGCAGG+AGG | - | chr5.4:68888945-68888964 | MS.gene39835:intron | 45.0% | |
| TCCGCAACTGTGCTTATTAC+TGG | - | chr5.4:68890297-68890316 | MS.gene39835:intron | 45.0% | |
| TCGGTTTATTTGCCCAAGGT+TGG | + | chr5.4:68889176-68889195 | None:intergenic | 45.0% | |
| TGAAGGTCACTGTGGTTTCT+AGG | - | chr5.4:68888686-68888705 | MS.gene39835:CDS | 45.0% | |
| TGTTTGATGGAAAGGAAGGG+AGG | - | chr5.4:68891327-68891346 | MS.gene39835:CDS | 45.0% | |
| ! | ACAGGCTTTTCCTTTGATCC+CGG | + | chr5.4:68889957-68889976 | None:intergenic | 45.0% |
| ! | GTCACTTACAGGGGTGTATA+GGG | + | chr5.4:68890360-68890379 | None:intergenic | 45.0% |
| ! | TCACTTACAGGGGTGTATAG+GGG | + | chr5.4:68890359-68890378 | None:intergenic | 45.0% |
| ACTGGGCTCTTGCAAAACAC+AGG | - | chr5.4:68890630-68890649 | MS.gene39835:intron | 50.0% | |
| CAATGTTGAAGCCCAACCAC+TGG | + | chr5.4:68890553-68890572 | None:intergenic | 50.0% | |
| CTTGACACTTCCTGTCCAAC+CGG | - | chr5.4:68889935-68889954 | MS.gene39835:CDS | 50.0% | |
| GGCTACTGTAGCAGATTTGC+AGG | - | chr5.4:68888942-68888961 | MS.gene39835:intron | 50.0% | |
| GGTGGATATCAAATCCCACG+TGG | - | chr5.4:68890479-68890498 | MS.gene39835:intron | 50.0% | |
| TGATATCCACCTTCTCCAGC+AGG | + | chr5.4:68890470-68890489 | None:intergenic | 50.0% | |
| TTGACACTTCCTGTCCAACC+GGG | - | chr5.4:68889936-68889955 | MS.gene39835:CDS | 50.0% | |
| ! | CTGCCTTGATGGATGCTTCT+TGG | + | chr5.4:68889913-68889932 | None:intergenic | 50.0% |
| ! | GCTTTTCCTTTGATCCCGGT+TGG | + | chr5.4:68889953-68889972 | None:intergenic | 50.0% |
| ! | GGGACTTATGATGGGGTGTT+TGG | + | chr5.4:68889416-68889435 | None:intergenic | 50.0% |
| ! | GGTCACTTACAGGGGTGTAT+AGG | + | chr5.4:68890361-68890380 | None:intergenic | 50.0% |
| ! | GTCACTGTGGTTTCTAGGAG+TGG | - | chr5.4:68888691-68888710 | MS.gene39835:CDS | 50.0% |
| ! | GTGTTTTGCAAGAGCCCAGT+TGG | + | chr5.4:68890630-68890649 | None:intergenic | 50.0% |
| ! | TTACAGGGGTGTATAGGGGA+TGG | + | chr5.4:68890355-68890374 | None:intergenic | 50.0% |
| !! | CAGCCAAGAAGCATCCATCA+AGG | - | chr5.4:68889907-68889926 | MS.gene39835:CDS | 50.0% |
| AGGAATCTTCGTGGACCTGC+TGG | - | chr5.4:68890452-68890471 | MS.gene39835:intron | 55.0% | |
| GCAATATCACCCACCGACGA+GGG | + | chr5.4:68891361-68891380 | None:intergenic | 55.0% | |
| TCCTGTCCAACCGGGATCAA+AGG | - | chr5.4:68889944-68889963 | MS.gene39835:CDS | 55.0% | |
| TCCTTTGATCCCGGTTGGAC+AGG | + | chr5.4:68889948-68889967 | None:intergenic | 55.0% | |
| TGGAAAGGGGCGAAGTTGCA+TGG | + | chr5.4:68890271-68890290 | None:intergenic | 55.0% | |
| TGGCATATGTCTGCACAGGG+TGG | + | chr5.4:68890184-68890203 | None:intergenic | 55.0% | |
| ! | AGTGTCAAGCGCTGCCTTGA+TGG | + | chr5.4:68889924-68889943 | None:intergenic | 55.0% |
| ATGGAAAGGAAGGGAGGCCG+AGG | - | chr5.4:68891333-68891352 | MS.gene39835:CDS | 60.0% | |
| CTTCGTGGACCTGCTGGAGA+AGG | - | chr5.4:68890458-68890477 | MS.gene39835:intron | 60.0% | |
| GGCAATATCACCCACCGACG+AGG | + | chr5.4:68891362-68891381 | None:intergenic | 60.0% | |
| CGTGGACCTGCTGGAGAAGG+TGG | - | chr5.4:68890461-68890480 | MS.gene39835:intron | 65.0% | |
| !! | ACCCACCGACGAGGGTACCT+CGG | + | chr5.4:68891353-68891372 | None:intergenic | 65.0% |
| ! | GCCGAGGTACCCTCGTCGGT+GGG | - | chr5.4:68891349-68891368 | MS.gene39835:CDS | 70.0% |
| ! | GGAGGCCGAGGTACCCTCGT+CGG | - | chr5.4:68891345-68891364 | MS.gene39835:CDS | 70.0% |
| ! | GGCCGAGGTACCCTCGTCGG+TGG | - | chr5.4:68891348-68891367 | MS.gene39835:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 68888685 | 68891394 | 68888685 | ID=MS.gene39835 |
| chr5.4 | mRNA | 68888685 | 68891394 | 68888685 | ID=MS.gene39835.t1;Parent=MS.gene39835 |
| chr5.4 | exon | 68891326 | 68891394 | 68891326 | ID=MS.gene39835.t1.exon1;Parent=MS.gene39835.t1 |
| chr5.4 | CDS | 68891326 | 68891394 | 68891326 | ID=cds.MS.gene39835.t1;Parent=MS.gene39835.t1 |
| chr5.4 | exon | 68891097 | 68891136 | 68891097 | ID=MS.gene39835.t1.exon2;Parent=MS.gene39835.t1 |
| chr5.4 | CDS | 68891097 | 68891136 | 68891097 | ID=cds.MS.gene39835.t1;Parent=MS.gene39835.t1 |
| chr5.4 | exon | 68889415 | 68890169 | 68889415 | ID=MS.gene39835.t1.exon3;Parent=MS.gene39835.t1 |
| chr5.4 | CDS | 68889415 | 68890169 | 68889415 | ID=cds.MS.gene39835.t1;Parent=MS.gene39835.t1 |
| chr5.4 | exon | 68888685 | 68888753 | 68888685 | ID=MS.gene39835.t1.exon4;Parent=MS.gene39835.t1 |
| chr5.4 | CDS | 68888685 | 68888753 | 68888685 | ID=cds.MS.gene39835.t1;Parent=MS.gene39835.t1 |
| Gene Sequence |
| Protein sequence |
