Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39902.t1 | GAU44818.1 | 100 | 152 | 0 | 0 | 1 | 152 | 1 | 152 | 3.20E-79 | 304.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39902.t1 | Q08112 | 94.1 | 152 | 9 | 0 | 1 | 152 | 1 | 152 | 1.5e-77 | 290.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39902.t1 | A0A2Z6NJY7 | 100.0 | 152 | 0 | 0 | 1 | 152 | 1 | 152 | 2.3e-79 | 304.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050912 | MS.gene39902 | 0.806103 | 9.68E-50 | -1.69E-46 |
| MS.gene053224 | MS.gene39902 | 0.818993 | 1.47E-52 | -1.69E-46 |
| MS.gene057643 | MS.gene39902 | 0.811168 | 8.01E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006126 | MS.gene39902 | PPI |
| MS.gene80490 | MS.gene39902 | PPI |
| MS.gene006123 | MS.gene39902 | PPI |
| MS.gene62695 | MS.gene39902 | PPI |
| MS.gene03522 | MS.gene39902 | PPI |
| MS.gene97614 | MS.gene39902 | PPI |
| MS.gene60717 | MS.gene39902 | PPI |
| MS.gene054292 | MS.gene39902 | PPI |
| MS.gene60716 | MS.gene39902 | PPI |
| MS.gene88892 | MS.gene39902 | PPI |
| MS.gene006122 | MS.gene39902 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39902.t1 | MTR_1g070450 | 99.342 | 152 | 1 | 0 | 1 | 152 | 1 | 152 | 3.72e-109 | 307 |
| MS.gene39902.t1 | MTR_8g105110 | 96.104 | 154 | 4 | 1 | 1 | 152 | 1 | 154 | 2.04e-104 | 295 |
| MS.gene39902.t1 | MTR_4g075450 | 96.053 | 152 | 6 | 0 | 1 | 152 | 1 | 152 | 5.01e-104 | 294 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39902.t1 | AT5G09510 | 94.079 | 152 | 9 | 0 | 1 | 152 | 1 | 152 | 6.54e-96 | 273 |
| MS.gene39902.t1 | AT1G04270 | 94.079 | 152 | 9 | 0 | 1 | 152 | 1 | 152 | 1.01e-95 | 273 |
| MS.gene39902.t1 | AT5G09500 | 88.816 | 152 | 15 | 1 | 1 | 152 | 1 | 150 | 9.49e-95 | 270 |
| MS.gene39902.t1 | AT1G04270 | 93.421 | 152 | 9 | 1 | 1 | 152 | 1 | 151 | 3.79e-93 | 266 |
| MS.gene39902.t1 | AT5G09490 | 82.237 | 152 | 27 | 0 | 1 | 152 | 1 | 152 | 1.13e-90 | 260 |
| MS.gene39902.t1 | AT5G43640 | 87.919 | 149 | 18 | 0 | 4 | 152 | 1 | 149 | 4.25e-85 | 246 |
| MS.gene39902.t1 | AT5G09510 | 94.915 | 118 | 6 | 0 | 35 | 152 | 1 | 118 | 4.06e-71 | 209 |
| MS.gene39902.t1 | AT5G63070 | 62.500 | 160 | 52 | 3 | 1 | 152 | 1 | 160 | 3.81e-63 | 191 |
| MS.gene39902.t1 | AT1G33850 | 80.597 | 67 | 13 | 0 | 4 | 70 | 1 | 67 | 2.45e-22 | 84.7 |
Find 46 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTAAACGTTCTCTTCTT+TGG | 0.223032 | 1.4:-57807410 | None:intergenic |
| TGTTGATCTCGATGCTCTTT+TGG | 0.301311 | 1.4:+57807448 | MS.gene39902:CDS |
| AGGTGAGTCCTCACTGGTTC+TGG | 0.312113 | 1.4:-57808947 | None:intergenic |
| CCAGGCCTACCGTGCTTAAC+AGG | 0.333020 | 1.4:-57809103 | None:intergenic |
| AGATAATGGCCAATCATTTC+AGG | 0.354175 | 1.4:-57809055 | None:intergenic |
| GATGAGTGCCATAGGCTTGC+GGG | 0.362183 | 1.4:-57807995 | None:intergenic |
| TGAAATGATTGGCCATTATC+TGG | 0.368757 | 1.4:+57809057 | MS.gene39902:CDS |
| TCTCTGCTCGTGCACGTAGA+AGG | 0.369916 | 1.4:+57807501 | MS.gene39902:CDS |
| GAAATTAAGCCTGAAATGAT+TGG | 0.379557 | 1.4:+57809046 | MS.gene39902:CDS |
| CTTAATTTCAACTTGGTTGA+AGG | 0.392478 | 1.4:-57809032 | None:intergenic |
| TTGAGAATTCAGCCAGATAA+TGG | 0.430982 | 1.4:-57809069 | None:intergenic |
| ACTCCTTGTGCTGCTACCTC+TGG | 0.447556 | 1.4:-57807386 | None:intergenic |
| GAGATGATCGGTAGCATCAT+TGG | 0.480540 | 1.4:+57808992 | MS.gene39902:CDS |
| CCTGTTAAGCACGGTAGGCC+TGG | 0.480548 | 1.4:+57809103 | MS.gene39902:CDS |
| ACAGAAAAGGGAAGCACCAC+CGG | 0.488317 | 1.4:+57808916 | MS.gene39902:intron |
| ACTGGTTCTGGCTTCTCACC+CGG | 0.493454 | 1.4:-57808935 | None:intergenic |
| TTGGTGCTACTCACTCCTCC+AGG | 0.496949 | 1.4:+57809128 | MS.gene39902:CDS |
| TGGTTTGACCCGCAAGCCTA+TGG | 0.497772 | 1.4:+57807987 | MS.gene39902:CDS |
| TGATGAGTGCCATAGGCTTG+CGG | 0.517926 | 1.4:-57807996 | None:intergenic |
| CAGGCACAATGATCATGTTA+CGG | 0.535956 | 1.4:-57808970 | None:intergenic |
| ATGATGCTACCGATCATCTC+AGG | 0.536560 | 1.4:-57808989 | None:intergenic |
| AAGCACGGTAGGCCTGGTAT+TGG | 0.547800 | 1.4:+57809109 | MS.gene39902:CDS |
| TTTCAGGCTTAATTTCAACT+TGG | 0.556240 | 1.4:-57809039 | None:intergenic |
| CAGAAAAGGGAAGCACCACC+GGG | 0.559817 | 1.4:+57808917 | MS.gene39902:intron |
| TTACGGAGGTGAGTCCTCAC+TGG | 0.565975 | 1.4:-57808953 | None:intergenic |
| AGCATCATTGGTGTCTACAA+TGG | 0.572789 | 1.4:+57809004 | MS.gene39902:CDS |
| GAGTGAGTAGCACCAATACC+AGG | 0.575625 | 1.4:-57809121 | None:intergenic |
| GAACCAGAGGTAGCAGCACA+AGG | 0.588844 | 1.4:+57807383 | MS.gene39902:CDS |
| AGCTTCTTGATGAGTGCCAT+AGG | 0.595409 | 1.4:-57808003 | None:intergenic |
| ACAAGCCTGTTAAGCACGGT+AGG | 0.596494 | 1.4:+57809098 | MS.gene39902:CDS |
| TTTAAGAAGTTCAGTTTCCG+TGG | 0.599932 | 1.4:+57807425 | MS.gene39902:CDS |
| TCACTTCAGAGGAATAAACC+TGG | 0.626759 | 1.4:-57809146 | None:intergenic |
| AAGCTTGACAAGTTCATCAG+TGG | 0.629931 | 1.4:-57807477 | None:intergenic |
| GATGACAATCTTCACTTCAG+AGG | 0.634610 | 1.4:-57809157 | None:intergenic |
| TCTTACAAGCCTGTTAAGCA+CGG | 0.639372 | 1.4:+57809094 | MS.gene39902:CDS |
| TCAGGCGGATGTTGAACCAG+AGG | 0.645787 | 1.4:+57807370 | MS.gene39902:intron |
| GGTTCTGGCTTCTCACCCGG+TGG | 0.646985 | 1.4:-57808932 | None:intergenic |
| ACTCATCAAGAAGCTCCGCA+AGG | 0.648877 | 1.4:+57808011 | MS.gene39902:CDS |
| ATCATTGTGCCTGAGATGAT+CGG | 0.650070 | 1.4:+57808980 | MS.gene39902:CDS |
| ACAGATAACTCACCGCCTTG+CGG | 0.662337 | 1.4:-57808026 | None:intergenic |
| GCACAATGATCATGTTACGG+AGG | 0.711118 | 1.4:-57808967 | None:intergenic |
| GTGAGAAGCCAGAACCAGTG+AGG | 0.711539 | 1.4:+57808939 | MS.gene39902:CDS |
| CATCAAGAAGCTCCGCAAGG+CGG | 0.735053 | 1.4:+57808014 | MS.gene39902:CDS |
| GAGCATCGAGATCAACACCA+CGG | 0.739088 | 1.4:-57807442 | None:intergenic |
| CTTCAGAGGAATAAACCTGG+AGG | 0.744280 | 1.4:-57809143 | None:intergenic |
| GTTCATTTCAGGTTTCAACG+TGG | 0.745899 | 1.4:+57807967 | MS.gene39902:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTGGAAATTGTTTATTT+AGG | + | chr1.4:57808180-57808199 | MS.gene39902:intron | 15.0% |
| !! | ATTTGGAAATTGTTTATTTA+GGG | + | chr1.4:57808181-57808200 | MS.gene39902:intron | 15.0% |
| !!! | TTCATTTTGTTTTATTTTGT+GGG | + | chr1.4:57807750-57807769 | MS.gene39902:intron | 15.0% |
| !!! | TTTCATTTTGTTTTATTTTG+TGG | + | chr1.4:57807749-57807768 | MS.gene39902:intron | 15.0% |
| !! | AACCTAAAATATTCAACATT+TGG | - | chr1.4:57807723-57807742 | None:intergenic | 20.0% |
| !! | AATATACTGTCTTAAATTTG+GGG | + | chr1.4:57808423-57808442 | MS.gene39902:intron | 20.0% |
| !! | ACAATATACTGTCTTAAATT+TGG | + | chr1.4:57808421-57808440 | MS.gene39902:intron | 20.0% |
| !! | CAATATACTGTCTTAAATTT+GGG | + | chr1.4:57808422-57808441 | MS.gene39902:intron | 20.0% |
| !! | TAACCTAAAAATGATGAAAA+TGG | - | chr1.4:57807695-57807714 | None:intergenic | 20.0% |
| !! | TTAAAATGATAGCAATGATT+GGG | - | chr1.4:57808811-57808830 | None:intergenic | 20.0% |
| !! | TTTAACAATATGTTCATTTC+AGG | + | chr1.4:57807956-57807975 | MS.gene39902:intron | 20.0% |
| !! | TTTGGAAATTGTTTATTTAG+GGG | + | chr1.4:57808182-57808201 | MS.gene39902:intron | 20.0% |
| !!! | ATGAATTTGATTGATTTTTC+AGG | + | chr1.4:57807352-57807371 | MS.gene39902:intron | 20.0% |
| !!! | TTCATCATTTTTAGGTTATT+TGG | + | chr1.4:57807697-57807716 | MS.gene39902:intron | 20.0% |
| !!! | TTCATTTTAAACTTTTGCTA+TGG | + | chr1.4:57808769-57808788 | MS.gene39902:intron | 20.0% |
| !!! | TTTAAAATGATAGCAATGAT+TGG | - | chr1.4:57808812-57808831 | None:intergenic | 20.0% |
| !!! | TTTTATGTTCTGTTACTTAT+AGG | + | chr1.4:57807875-57807894 | MS.gene39902:intron | 20.0% |
| ! | AAAGTAATGAATGGATATGA+AGG | - | chr1.4:57807665-57807684 | None:intergenic | 25.0% |
| ! | ACATTTGAACTTAACAGATA+TGG | + | chr1.4:57808451-57808470 | MS.gene39902:intron | 25.0% |
| ! | ATATACTGTCTTAAATTTGG+GGG | + | chr1.4:57808424-57808443 | MS.gene39902:intron | 25.0% |
| ! | CGTTAATCTGATTTATTATG+AGG | + | chr1.4:57808315-57808334 | MS.gene39902:intron | 25.0% |
| ! | GTAAATGTGAAAATGAGAAA+TGG | - | chr1.4:57807935-57807954 | None:intergenic | 25.0% |
| ! | TACCAAATTTGTGTATCATT+GGG | + | chr1.4:57808745-57808764 | MS.gene39902:intron | 25.0% |
| ! | TGTATGATTATGTATCTAAC+TGG | + | chr1.4:57808573-57808592 | MS.gene39902:intron | 25.0% |
| ! | TTAGAGTTGTATAAGGAATT+TGG | + | chr1.4:57808107-57808126 | MS.gene39902:intron | 25.0% |
| ! | TTGTATATCCTTACAGAAAA+GGG | + | chr1.4:57808904-57808923 | MS.gene39902:intron | 25.0% |
| !! | CTTTTGCATTTGTATCTTTT+GGG | + | chr1.4:57808265-57808284 | MS.gene39902:intron | 25.0% |
| !! | TCTTTTGCATTTGTATCTTT+TGG | + | chr1.4:57808264-57808283 | MS.gene39902:intron | 25.0% |
| !!! | AATGTTTTAGATCAAGTAGA+AGG | - | chr1.4:57808376-57808395 | None:intergenic | 25.0% |
| !!! | AATTTGATTGATTTTTCAGG+CGG | + | chr1.4:57807355-57807374 | MS.gene39902:intron | 25.0% |
| !!! | ATGTTTTAGATCAAGTAGAA+GGG | - | chr1.4:57808375-57808394 | None:intergenic | 25.0% |
| !!! | CGTTAATCTGATTTATTTTG+AGG | + | chr1.4:57807635-57807654 | MS.gene39902:intron | 25.0% |
| !!! | GTTTTAGTTGTTGAGTAATT+TGG | + | chr1.4:57808164-57808183 | MS.gene39902:intron | 25.0% |
| AACCCAATGATACACAAATT+TGG | - | chr1.4:57808750-57808769 | None:intergenic | 30.0% | |
| AAGAGAAAGAGATAGAGTTA+GGG | - | chr1.4:57807290-57807309 | None:intergenic | 30.0% | |
| CTAGTTTAATTCAATAGCAG+TGG | + | chr1.4:57808634-57808653 | MS.gene39902:intron | 30.0% | |
| CTTAATTTCAACTTGGTTGA+AGG | - | chr1.4:57809035-57809054 | None:intergenic | 30.0% | |
| CTTGTATATCCTTACAGAAA+AGG | + | chr1.4:57808903-57808922 | MS.gene39902:intron | 30.0% | |
| GAAATTAACACAAGTCCTTA+AGG | - | chr1.4:57807903-57807922 | None:intergenic | 30.0% | |
| GAAATTAAGCCTGAAATGAT+TGG | + | chr1.4:57809046-57809065 | MS.gene39902:CDS | 30.0% | |
| GAAATTGTTTATTTAGGGGA+TGG | + | chr1.4:57808186-57808205 | MS.gene39902:intron | 30.0% | |
| GAATATGTGAATGATGAAGA+TGG | + | chr1.4:57807585-57807604 | MS.gene39902:intron | 30.0% | |
| GTACCAAATTTGTGTATCAT+TGG | + | chr1.4:57808744-57808763 | MS.gene39902:intron | 30.0% | |
| TATACTGTCTTAAATTTGGG+GGG | + | chr1.4:57808425-57808444 | MS.gene39902:intron | 30.0% | |
| TTAGTGCTTAGAGTTGTATA+AGG | + | chr1.4:57808100-57808119 | MS.gene39902:intron | 30.0% | |
| TTCTTAAACGTTCTCTTCTT+TGG | - | chr1.4:57807413-57807432 | None:intergenic | 30.0% | |
| TTTCAGGCTTAATTTCAACT+TGG | - | chr1.4:57809042-57809061 | None:intergenic | 30.0% | |
| ! | ATAAGGAATTTGGAGTTTGT+AGG | + | chr1.4:57808117-57808136 | MS.gene39902:intron | 30.0% |
| ! | GGCCAAATGTTGAATATTTT+AGG | + | chr1.4:57807718-57807737 | MS.gene39902:intron | 30.0% |
| ! | TGTTACTTATAGGATCCTTA+AGG | + | chr1.4:57807885-57807904 | MS.gene39902:intron | 30.0% |
| !! | GCACCATTTTCATCATTTTT+AGG | + | chr1.4:57807689-57807708 | MS.gene39902:intron | 30.0% |
| !! | GTCATCTAATTTGTTGTTTG+AGG | + | chr1.4:57808855-57808874 | MS.gene39902:intron | 30.0% |
| !! | TAGCATTTTGAAGAAATGTG+AGG | + | chr1.4:57807802-57807821 | MS.gene39902:intron | 30.0% |
| AACCTGATGATACACAGATT+TGG | - | chr1.4:57808676-57808695 | None:intergenic | 35.0% | |
| ATCTCCTTGACAGATACATA+TGG | + | chr1.4:57808482-57808501 | MS.gene39902:intron | 35.0% | |
| CTAGTTTAATTCGATAGCAG+TGG | + | chr1.4:57808708-57808727 | MS.gene39902:intron | 35.0% | |
| GAAGAGAAAGAGATAGAGTT+AGG | - | chr1.4:57807291-57807310 | None:intergenic | 35.0% | |
| TACCAAATCTGTGTATCATC+AGG | + | chr1.4:57808671-57808690 | MS.gene39902:intron | 35.0% | |
| TGTATCTAACTGGTTGTGTT+AGG | + | chr1.4:57808583-57808602 | MS.gene39902:intron | 35.0% | |
| TTGAGAATTCAGCCAGATAA+TGG | - | chr1.4:57809072-57809091 | None:intergenic | 35.0% | |
| TTTAAGAAGTTCAGTTTCCG+TGG | + | chr1.4:57807425-57807444 | MS.gene39902:CDS | 35.0% | |
| ! | AGATAATGGCCAATCATTTC+AGG | - | chr1.4:57809058-57809077 | None:intergenic | 35.0% |
| ! | TGAAATGATTGGCCATTATC+TGG | + | chr1.4:57809057-57809076 | MS.gene39902:CDS | 35.0% |
| AAGCTTGACAAGTTCATCAG+TGG | - | chr1.4:57807480-57807499 | None:intergenic | 40.0% | |
| ATCATTGTGCCTGAGATGAT+CGG | + | chr1.4:57808980-57808999 | MS.gene39902:CDS | 40.0% | |
| CAGGCACAATGATCATGTTA+CGG | - | chr1.4:57808973-57808992 | None:intergenic | 40.0% | |
| GGTGCTCAGAAAGTAATGAA+TGG | - | chr1.4:57807674-57807693 | None:intergenic | 40.0% | |
| TCACTTCAGAGGAATAAACC+TGG | - | chr1.4:57809149-57809168 | None:intergenic | 40.0% | |
| TCTTACAAGCCTGTTAAGCA+CGG | + | chr1.4:57809094-57809113 | MS.gene39902:CDS | 40.0% | |
| ! | AGCATCATTGGTGTCTACAA+TGG | + | chr1.4:57809004-57809023 | MS.gene39902:CDS | 40.0% |
| ! | TGTTGATCTCGATGCTCTTT+TGG | + | chr1.4:57807448-57807467 | MS.gene39902:CDS | 40.0% |
| !! | GTTCATTTCAGGTTTCAACG+TGG | + | chr1.4:57807967-57807986 | MS.gene39902:intron | 40.0% |
| AGCTTCTTGATGAGTGCCAT+AGG | - | chr1.4:57808006-57808025 | None:intergenic | 45.0% | |
| ATGATGCTACCGATCATCTC+AGG | - | chr1.4:57808992-57809011 | None:intergenic | 45.0% | |
| CTTCAGAGGAATAAACCTGG+AGG | - | chr1.4:57809146-57809165 | None:intergenic | 45.0% | |
| GAGATGATCGGTAGCATCAT+TGG | + | chr1.4:57808992-57809011 | MS.gene39902:CDS | 45.0% | |
| GCACAATGATCATGTTACGG+AGG | - | chr1.4:57808970-57808989 | None:intergenic | 45.0% | |
| GCAGCCATATGTATCTGTCA+AGG | - | chr1.4:57808489-57808508 | None:intergenic | 45.0% | |
| ! | TGGTGCTTCCCTTTTCTGTA+AGG | - | chr1.4:57808915-57808934 | None:intergenic | 45.0% |
| ACAAGCCTGTTAAGCACGGT+AGG | + | chr1.4:57809098-57809117 | MS.gene39902:CDS | 50.0% | |
| ACAGATAACTCACCGCCTTG+CGG | - | chr1.4:57808029-57808048 | None:intergenic | 50.0% | |
| ACTCATCAAGAAGCTCCGCA+AGG | + | chr1.4:57808011-57808030 | MS.gene39902:CDS | 50.0% | |
| GAGTGAGTAGCACCAATACC+AGG | - | chr1.4:57809124-57809143 | None:intergenic | 50.0% | |
| TGATGAGTGCCATAGGCTTG+CGG | - | chr1.4:57807999-57808018 | None:intergenic | 50.0% | |
| !! | ACAGAAAAGGGAAGCACCAC+CGG | + | chr1.4:57808916-57808935 | MS.gene39902:intron | 50.0% |
| !! | GAGCATCGAGATCAACACCA+CGG | - | chr1.4:57807445-57807464 | None:intergenic | 50.0% |
| AAGCACGGTAGGCCTGGTAT+TGG | + | chr1.4:57809109-57809128 | MS.gene39902:CDS | 55.0% | |
| CATCAAGAAGCTCCGCAAGG+CGG | + | chr1.4:57808014-57808033 | MS.gene39902:CDS | 55.0% | |
| GAACCAGAGGTAGCAGCACA+AGG | + | chr1.4:57807383-57807402 | MS.gene39902:CDS | 55.0% | |
| GATGAGTGCCATAGGCTTGC+GGG | - | chr1.4:57807998-57808017 | None:intergenic | 55.0% | |
| GTGAGAAGCCAGAACCAGTG+AGG | + | chr1.4:57808939-57808958 | MS.gene39902:CDS | 55.0% | |
| TCAGGCGGATGTTGAACCAG+AGG | + | chr1.4:57807370-57807389 | MS.gene39902:intron | 55.0% | |
| TCTCTGCTCGTGCACGTAGA+AGG | + | chr1.4:57807501-57807520 | MS.gene39902:CDS | 55.0% | |
| TGGTTTGACCCGCAAGCCTA+TGG | + | chr1.4:57807987-57808006 | MS.gene39902:CDS | 55.0% | |
| TTACGGAGGTGAGTCCTCAC+TGG | - | chr1.4:57808956-57808975 | None:intergenic | 55.0% | |
| ! | ACTCCTTGTGCTGCTACCTC+TGG | - | chr1.4:57807389-57807408 | None:intergenic | 55.0% |
| !! | ACTGGTTCTGGCTTCTCACC+CGG | - | chr1.4:57808938-57808957 | None:intergenic | 55.0% |
| !! | AGGTGAGTCCTCACTGGTTC+TGG | - | chr1.4:57808950-57808969 | None:intergenic | 55.0% |
| !! | CAGAAAAGGGAAGCACCACC+GGG | + | chr1.4:57808917-57808936 | MS.gene39902:intron | 55.0% |
| !! | TTGGTGCTACTCACTCCTCC+AGG | + | chr1.4:57809128-57809147 | MS.gene39902:CDS | 55.0% |
| CCAGGCCTACCGTGCTTAAC+AGG | - | chr1.4:57809106-57809125 | None:intergenic | 60.0% | |
| CCTGTTAAGCACGGTAGGCC+TGG | + | chr1.4:57809103-57809122 | MS.gene39902:CDS | 60.0% | |
| !! | GGTTCTGGCTTCTCACCCGG+TGG | - | chr1.4:57808935-57808954 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 57807277 | 57809168 | 57807277 | ID=MS.gene39902 |
| chr1.4 | mRNA | 57807277 | 57809168 | 57807277 | ID=MS.gene39902.t1;Parent=MS.gene39902 |
| chr1.4 | exon | 57807277 | 57807279 | 57807277 | ID=MS.gene39902.t1.exon1;Parent=MS.gene39902.t1 |
| chr1.4 | CDS | 57807277 | 57807279 | 57807277 | ID=cds.MS.gene39902.t1;Parent=MS.gene39902.t1 |
| chr1.4 | exon | 57807374 | 57807522 | 57807374 | ID=MS.gene39902.t1.exon2;Parent=MS.gene39902.t1 |
| chr1.4 | CDS | 57807374 | 57807522 | 57807374 | ID=cds.MS.gene39902.t1;Parent=MS.gene39902.t1 |
| chr1.4 | exon | 57807978 | 57808035 | 57807978 | ID=MS.gene39902.t1.exon3;Parent=MS.gene39902.t1 |
| chr1.4 | CDS | 57807978 | 57808035 | 57807978 | ID=cds.MS.gene39902.t1;Parent=MS.gene39902.t1 |
| chr1.4 | exon | 57808920 | 57809168 | 57808920 | ID=MS.gene39902.t1.exon4;Parent=MS.gene39902.t1 |
| chr1.4 | CDS | 57808920 | 57809168 | 57808920 | ID=cds.MS.gene39902.t1;Parent=MS.gene39902.t1 |
| Gene Sequence |
| Protein sequence |
