Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40028.t1 | XP_003590733.2 | 96.7 | 120 | 4 | 0 | 1 | 120 | 1 | 120 | 7.90E-57 | 229.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40028.t1 | G7I2P6 | 96.7 | 120 | 4 | 0 | 1 | 120 | 1 | 120 | 5.7e-57 | 229.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050277 | MS.gene40028 | 0.824655 | 7.18E-54 | -1.69E-46 |
| MS.gene050320 | MS.gene40028 | 0.857348 | 1.74E-62 | -1.69E-46 |
| MS.gene051063 | MS.gene40028 | 0.836249 | 1.05E-56 | -1.69E-46 |
| MS.gene051245 | MS.gene40028 | 0.825245 | 5.21E-54 | -1.69E-46 |
| MS.gene051746 | MS.gene40028 | 0.81263 | 3.85E-51 | -1.69E-46 |
| MS.gene051748 | MS.gene40028 | 0.826198 | 3.09E-54 | -1.69E-46 |
| MS.gene051756 | MS.gene40028 | 0.810879 | 9.25E-51 | -1.69E-46 |
| MS.gene051903 | MS.gene40028 | 0.845459 | 4.01E-59 | -1.69E-46 |
| MS.gene052527 | MS.gene40028 | 0.805562 | 1.26E-49 | -1.69E-46 |
| MS.gene052818 | MS.gene40028 | -0.800763 | 1.24E-48 | -1.69E-46 |
| MS.gene053109 | MS.gene40028 | 0.833483 | 5.20E-56 | -1.69E-46 |
| MS.gene055174 | MS.gene40028 | 0.82107 | 4.91E-53 | -1.69E-46 |
| MS.gene056752 | MS.gene40028 | 0.819055 | 1.42E-52 | -1.69E-46 |
| MS.gene057094 | MS.gene40028 | 0.814675 | 1.37E-51 | -1.69E-46 |
| MS.gene057234 | MS.gene40028 | 0.829505 | 4.96E-55 | -1.69E-46 |
| MS.gene057452 | MS.gene40028 | -0.823971 | 1.04E-53 | -1.69E-46 |
| MS.gene057999 | MS.gene40028 | 0.813761 | 2.17E-51 | -1.69E-46 |
| MS.gene058074 | MS.gene40028 | 0.813694 | 2.25E-51 | -1.69E-46 |
| MS.gene058238 | MS.gene40028 | 0.827923 | 1.20E-54 | -1.69E-46 |
| MS.gene06001 | MS.gene40028 | 0.827892 | 1.22E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40028.t1 | MTR_1g073190 | 96.667 | 120 | 4 | 0 | 1 | 120 | 1 | 120 | 2.51e-83 | 239 |
| MS.gene40028.t1 | MTR_1g073190 | 96.117 | 103 | 4 | 0 | 1 | 103 | 1 | 103 | 6.86e-70 | 204 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40028.t1 | AT1G48200 | 46.610 | 118 | 59 | 3 | 5 | 120 | 3 | 118 | 1.67e-24 | 90.5 |
Find 24 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATCTCAGATCATTATTT+TGG | 0.166457 | 1.4:-59790241 | None:intergenic |
| CCTAATAGACTTATTAGTTT+TGG | 0.244342 | 1.4:-59786776 | None:intergenic |
| AGTCTATTAGGAACACTCTT+TGG | 0.246535 | 1.4:+59786788 | MS.gene40028:CDS |
| CCAAAACTAATAAGTCTATT+AGG | 0.314104 | 1.4:+59786776 | MS.gene40028:CDS |
| GCAAGGCTCTATGAAATTTA+CGG | 0.323891 | 1.4:+59786868 | MS.gene40028:CDS |
| GTCTATTAGGAACACTCTTT+GGG | 0.365365 | 1.4:+59786789 | MS.gene40028:CDS |
| TAGAGCCTTGCCAAGGGAAC+TGG | 0.374122 | 1.4:-59786856 | None:intergenic |
| CACAGTGATCAATGTTGGTT+TGG | 0.374270 | 1.4:+59786669 | MS.gene40028:CDS |
| TTAGGAACACTCTTTGGGAT+TGG | 0.416748 | 1.4:+59786794 | MS.gene40028:CDS |
| GTTACTCTCTGAAGCTCTCT+TGG | 0.417972 | 1.4:-59786647 | None:intergenic |
| TGCCGAAGCAGCGTCTGATT+CGG | 0.436762 | 1.4:+59786831 | MS.gene40028:CDS |
| AGCCGAATCAGACGCTGCTT+CGG | 0.457423 | 1.4:-59786833 | None:intergenic |
| TGATTCGGCTCCAGTTCCCT+TGG | 0.500860 | 1.4:+59786846 | MS.gene40028:CDS |
| CGGCTCCAGTTCCCTTGGCA+AGG | 0.507167 | 1.4:+59786851 | MS.gene40028:CDS |
| GGATTAGCATCTTTCCTCAC+AGG | 0.533126 | 1.4:-59790207 | None:intergenic |
| TGAAGCTTTAGAAGTTGAGA+AGG | 0.542260 | 1.4:+59786744 | MS.gene40028:CDS |
| ACAGTGATCAATGTTGGTTT+GGG | 0.553382 | 1.4:+59786670 | MS.gene40028:CDS |
| AGTAACACAGTGATCAATGT+TGG | 0.560249 | 1.4:+59786664 | MS.gene40028:CDS |
| CCTCCTCAACAATCTGCACC+TGG | 0.565711 | 1.4:+59786901 | MS.gene40028:CDS |
| AGGAAAGATGCTAATCCAGC+TGG | 0.568309 | 1.4:+59790213 | MS.gene40028:CDS |
| CCAGGTGCAGATTGTTGAGG+AGG | 0.576080 | 1.4:-59786901 | None:intergenic |
| TTACCAGGTGCAGATTGTTG+AGG | 0.618119 | 1.4:-59786904 | None:intergenic |
| AATTTCATAGAGCCTTGCCA+AGG | 0.629006 | 1.4:-59786863 | None:intergenic |
| ATTTCATAGAGCCTTGCCAA+GGG | 0.656909 | 1.4:-59786862 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTAATTCATGTTAAAA+CGG | + | chr1.4:59789080-59789099 | MS.gene40028:intron | 10.0% |
| !!! | AATTGCATATTTTATATTTT+AGG | - | chr1.4:59789605-59789624 | None:intergenic | 10.0% |
| !! | AAAGAAGAAAGATTATAAAA+AGG | + | chr1.4:59788648-59788667 | MS.gene40028:intron | 15.0% |
| !! | AAGAAGAAAGATTATAAAAA+GGG | + | chr1.4:59788649-59788668 | MS.gene40028:intron | 15.0% |
| !! | AATTAAGGTAACATATAATT+AGG | + | chr1.4:59789118-59789137 | MS.gene40028:intron | 15.0% |
| !! | AATTAATTATTATCAAACTG+TGG | - | chr1.4:59789070-59789089 | None:intergenic | 15.0% |
| !! | ATTAAGGTAACATATAATTA+GGG | + | chr1.4:59789119-59789138 | MS.gene40028:intron | 15.0% |
| !! | GTATAATAAAATATCTAACT+TGG | - | chr1.4:59790082-59790101 | None:intergenic | 15.0% |
| !! | AAAAGAAAACCTTAAAACAA+TGG | + | chr1.4:59787560-59787579 | MS.gene40028:intron | 20.0% |
| !! | AACGCATAATTATAAGTTTA+AGG | - | chr1.4:59788768-59788787 | None:intergenic | 20.0% |
| !! | AATAATAATAAAAGAGCCTT+GGG | + | chr1.4:59788701-59788720 | MS.gene40028:intron | 20.0% |
| !! | ACCAAAATATTAATTTCATC+AGG | - | chr1.4:59787612-59787631 | None:intergenic | 20.0% |
| !! | CCAAAATATTAATTTCATCA+GGG | - | chr1.4:59787611-59787630 | None:intergenic | 20.0% |
| !! | TAAAATCTAAGCAACTATAA+GGG | + | chr1.4:59789360-59789379 | MS.gene40028:intron | 20.0% |
| !! | TAACATATAATTAGGGTTTA+AGG | + | chr1.4:59789126-59789145 | MS.gene40028:intron | 20.0% |
| !! | TAATAATAATAAAAGAGCCT+TGG | + | chr1.4:59788700-59788719 | MS.gene40028:intron | 20.0% |
| !! | TGAATTTAGATTAGGAATTA+AGG | + | chr1.4:59789103-59789122 | MS.gene40028:intron | 20.0% |
| !! | TGATTGTATGCATTTATATA+TGG | + | chr1.4:59786993-59787012 | MS.gene40028:intron | 20.0% |
| !! | TTAAAATCTAAGCAACTATA+AGG | + | chr1.4:59789359-59789378 | MS.gene40028:intron | 20.0% |
| !!! | ATGTATGTTGATTGTTATAA+AGG | + | chr1.4:59787660-59787679 | MS.gene40028:intron | 20.0% |
| !!! | GATATTTTATTATACCAATC+AGG | + | chr1.4:59790087-59790106 | MS.gene40028:intron | 20.0% |
| !!! | TCTATTTATAGCTTTACAAT+TGG | + | chr1.4:59789335-59789354 | MS.gene40028:intron | 20.0% |
| ! | AAGAAAGATTATAAAAAGGG+AGG | + | chr1.4:59788652-59788671 | MS.gene40028:intron | 25.0% |
| ! | AATTTGATGAATTGTTTGAG+AGG | + | chr1.4:59787160-59787179 | MS.gene40028:intron | 25.0% |
| ! | AGAGATAAAAACAAATTACC+AGG | - | chr1.4:59786922-59786941 | None:intergenic | 25.0% |
| ! | ATAACAATCAACATACATTC+TGG | - | chr1.4:59787658-59787677 | None:intergenic | 25.0% |
| ! | ATTGTTCATGGGTATAAATT+AGG | + | chr1.4:59788466-59788485 | MS.gene40028:intron | 25.0% |
| ! | ATTTGATGAATTGTTTGAGA+GGG | + | chr1.4:59787161-59787180 | MS.gene40028:intron | 25.0% |
| ! | CAAAAGATGAATGTTTATGA+TGG | + | chr1.4:59789304-59789323 | MS.gene40028:intron | 25.0% |
| ! | CCAAAACTAATAAGTCTATT+AGG | + | chr1.4:59786776-59786795 | MS.gene40028:CDS | 25.0% |
| ! | CCATGTAAAAGAAATTTACA+TGG | - | chr1.4:59790019-59790038 | None:intergenic | 25.0% |
| ! | TAAAACGGTGAATTTAGATT+AGG | + | chr1.4:59789095-59789114 | MS.gene40028:intron | 25.0% |
| ! | TAACAATCAACATACATTCT+GGG | - | chr1.4:59787657-59787676 | None:intergenic | 25.0% |
| ! | TGATTGTTATAAAGGTCATT+TGG | + | chr1.4:59787668-59787687 | MS.gene40028:intron | 25.0% |
| ! | TGCGTTAATCTTAATTTCTA+AGG | + | chr1.4:59788782-59788801 | MS.gene40028:intron | 25.0% |
| ! | TTATAAAGGTCATTTGGATA+AGG | + | chr1.4:59787674-59787693 | MS.gene40028:intron | 25.0% |
| !! | AAACATTCATCTTTTGTTCT+TGG | - | chr1.4:59789300-59789319 | None:intergenic | 25.0% |
| !! | AATGACAAATACTTTGAGAA+AGG | + | chr1.4:59787864-59787883 | MS.gene40028:intron | 25.0% |
| !! | ATCTTTGAGTTTATTGTTCA+TGG | + | chr1.4:59788454-59788473 | MS.gene40028:intron | 25.0% |
| !! | ATTTTACCCTAAAACTCTTT+TGG | - | chr1.4:59788380-59788399 | None:intergenic | 25.0% |
| !! | CCATGTAAATTTCTTTTACA+TGG | + | chr1.4:59790016-59790035 | MS.gene40028:intron | 25.0% |
| !! | CCCTGATGAAATTAATATTT+TGG | + | chr1.4:59787608-59787627 | MS.gene40028:intron | 25.0% |
| !! | GGTAAAATTTGAGAACTTTT+GGG | + | chr1.4:59788392-59788411 | MS.gene40028:intron | 25.0% |
| !! | TCTTTGAGTTTATTGTTCAT+GGG | + | chr1.4:59788455-59788474 | MS.gene40028:intron | 25.0% |
| !! | TTTCTCTTACAATTAGCTTA+CGG | - | chr1.4:59787974-59787993 | None:intergenic | 25.0% |
| !!! | AGGTTTCTACAATCATTTTT+CGG | + | chr1.4:59787073-59787092 | MS.gene40028:intron | 25.0% |
| !!! | AGTTTGAAAAGCTTGTTTTT+TGG | + | chr1.4:59788153-59788172 | MS.gene40028:intron | 25.0% |
| !!! | CCTAATAGACTTATTAGTTT+TGG | - | chr1.4:59786779-59786798 | None:intergenic | 25.0% |
| !!! | TGTTTTAAGGTTTTCTTTTC+TGG | - | chr1.4:59787559-59787578 | None:intergenic | 25.0% |
| !!! | TTATCGTTTAGCTTTTCTAT+GGG | - | chr1.4:59788033-59788052 | None:intergenic | 25.0% |
| !!! | TTCTGGTTAGTTTTGATAAA+GGG | + | chr1.4:59789974-59789993 | MS.gene40028:intron | 25.0% |
| !!! | TTTTAGGAACGAATATATGA+TGG | - | chr1.4:59789589-59789608 | None:intergenic | 25.0% |
| AAAAATTGAATTGCATCTGG+AGG | - | chr1.4:59789784-59789803 | None:intergenic | 30.0% | |
| AAAACTACAACAGAGTAACT+TGG | + | chr1.4:59789392-59789411 | MS.gene40028:intron | 30.0% | |
| AAACTACAACAGAGTAACTT+GGG | + | chr1.4:59789393-59789412 | MS.gene40028:intron | 30.0% | |
| ACATAAAGTTTCGATCTTCA+AGG | - | chr1.4:59788905-59788924 | None:intergenic | 30.0% | |
| ACCACAACAGAAGTAATTAT+AGG | - | chr1.4:59790174-59790193 | None:intergenic | 30.0% | |
| ACCTATAATTACTTCTGTTG+TGG | + | chr1.4:59790170-59790189 | MS.gene40028:intron | 30.0% | |
| AGAACAAAGATAATGAGAAG+AGG | - | chr1.4:59789842-59789861 | None:intergenic | 30.0% | |
| AGCTGAGATAAAAATGTGAT+GGG | + | chr1.4:59787755-59787774 | MS.gene40028:intron | 30.0% | |
| ATAAGTCTAATGACGTAATC+CGG | - | chr1.4:59789163-59789182 | None:intergenic | 30.0% | |
| ATAGGTAAGAAATCATGACA+TGG | - | chr1.4:59790156-59790175 | None:intergenic | 30.0% | |
| ATCTTGTAAAGCAGTAGTAA+AGG | + | chr1.4:59790041-59790060 | MS.gene40028:intron | 30.0% | |
| ATGCCTTAAAATCTCATCAA+AGG | + | chr1.4:59788128-59788147 | MS.gene40028:intron | 30.0% | |
| ATTATACCAATCAGGTGAAT+TGG | + | chr1.4:59790095-59790114 | MS.gene40028:intron | 30.0% | |
| CAAATCGTGTAACCAAATAT+TGG | + | chr1.4:59789808-59789827 | MS.gene40028:intron | 30.0% | |
| CAATATTTGGTTACACGATT+TGG | - | chr1.4:59789810-59789829 | None:intergenic | 30.0% | |
| CATAAAGTTTCGATCTTCAA+GGG | - | chr1.4:59788904-59788923 | None:intergenic | 30.0% | |
| CATGGTAGTTGTTGTAAATT+TGG | - | chr1.4:59790001-59790020 | None:intergenic | 30.0% | |
| CTATAACACTTGTAGCATAA+CGG | - | chr1.4:59787237-59787256 | None:intergenic | 30.0% | |
| CTTGTCTAAATTCACTTGTT+CGG | + | chr1.4:59788964-59788983 | MS.gene40028:intron | 30.0% | |
| GACTGTTATGGTAATTATTC+AGG | + | chr1.4:59787358-59787377 | MS.gene40028:intron | 30.0% | |
| GAGCAAAAATACGAAAGATT+CGG | - | chr1.4:59789524-59789543 | None:intergenic | 30.0% | |
| GATATTACTGTTGAATGACT+AGG | + | chr1.4:59787452-59787471 | MS.gene40028:intron | 30.0% | |
| TAGCATTAACCAATTCAATG+AGG | + | chr1.4:59786952-59786971 | MS.gene40028:intron | 30.0% | |
| TGAGAAAAACAGCTTGAATA+AGG | - | chr1.4:59788335-59788354 | None:intergenic | 30.0% | |
| TGCCTTAAAATCTCATCAAA+GGG | + | chr1.4:59788129-59788148 | MS.gene40028:intron | 30.0% | |
| TGTAGTAAACTAGCTCAAAA+AGG | + | chr1.4:59789625-59789644 | MS.gene40028:intron | 30.0% | |
| TTGTTATACACATAGGTTAC+TGG | + | chr1.4:59789879-59789898 | MS.gene40028:intron | 30.0% | |
| TTTACTACTGCTTTACAAGA+TGG | - | chr1.4:59790042-59790061 | None:intergenic | 30.0% | |
| TTTGTTCTTTGCTTTGATTG+TGG | + | chr1.4:59789854-59789873 | MS.gene40028:intron | 30.0% | |
| ! | AACTCTTTTGTATCTCTGAT+AGG | + | chr1.4:59788525-59788544 | MS.gene40028:intron | 30.0% |
| ! | ATTGAGTATTTCTACTGTTG+TGG | + | chr1.4:59788103-59788122 | MS.gene40028:intron | 30.0% |
| ! | CCAGATGCAATTCAATTTTT+GGG | + | chr1.4:59789784-59789803 | MS.gene40028:intron | 30.0% |
| ! | GGGTAAAATTTGAGAACTTT+TGG | + | chr1.4:59788391-59788410 | MS.gene40028:intron | 30.0% |
| ! | TATAATTAGGGTTTAAGGCT+TGG | + | chr1.4:59789131-59789150 | MS.gene40028:intron | 30.0% |
| ! | TCCAGATGCAATTCAATTTT+TGG | + | chr1.4:59789783-59789802 | MS.gene40028:intron | 30.0% |
| ! | TCTGTTCAGTTTTTCCAAAT+TGG | - | chr1.4:59787412-59787431 | None:intergenic | 30.0% |
| ! | TTCCCTTTGATGAGATTTTA+AGG | - | chr1.4:59788134-59788153 | None:intergenic | 30.0% |
| !! | TGTGGATTTGTTATACACAT+AGG | + | chr1.4:59789872-59789891 | MS.gene40028:intron | 30.0% |
| !!! | AACTTTTGGGTTAGATTCTA+GGG | + | chr1.4:59788405-59788424 | MS.gene40028:intron | 30.0% |
| !!! | GTTATCGTTTAGCTTTTCTA+TGG | - | chr1.4:59788034-59788053 | None:intergenic | 30.0% |
| !!! | GTTCTGGTTAGTTTTGATAA+AGG | + | chr1.4:59789973-59789992 | MS.gene40028:intron | 30.0% |
| !!! | TATCGTTTAGCTTTTCTATG+GGG | - | chr1.4:59788032-59788051 | None:intergenic | 30.0% |
| AAACAGCTTGAATAAGGTTC+AGG | - | chr1.4:59788329-59788348 | None:intergenic | 35.0% | |
| AACTAACCAGAACAAAGATG+AGG | - | chr1.4:59789966-59789985 | None:intergenic | 35.0% | |
| ACTAACGTTCATTGTAGACA+TGG | + | chr1.4:59789215-59789234 | MS.gene40028:intron | 35.0% | |
| ACTGAACAGAACACTTGTAA+CGG | + | chr1.4:59787422-59787441 | MS.gene40028:intron | 35.0% | |
| AGAATAGTCTAGCAAACCTT+GGG | - | chr1.4:59788930-59788949 | None:intergenic | 35.0% | |
| AGATGAGGAGCAAATAACAA+TGG | - | chr1.4:59789951-59789970 | None:intergenic | 35.0% | |
| AGTAACACAGTGATCAATGT+TGG | + | chr1.4:59786664-59786683 | MS.gene40028:CDS | 35.0% | |
| AGTAGACTCTTCTTTGTCTT+GGG | - | chr1.4:59789194-59789213 | None:intergenic | 35.0% | |
| AGTCTATTAGGAACACTCTT+TGG | + | chr1.4:59786788-59786807 | MS.gene40028:CDS | 35.0% | |
| ATCAATTCATAAAGCGAACG+CGG | - | chr1.4:59789001-59789020 | None:intergenic | 35.0% | |
| ATGATGAACCAATAATCCCA+AGG | - | chr1.4:59788720-59788739 | None:intergenic | 35.0% | |
| CAGCTGAGATAAAAATGTGA+TGG | + | chr1.4:59787754-59787773 | MS.gene40028:intron | 35.0% | |
| CAGTAGTAAAGGTTTGATGT+TGG | + | chr1.4:59790052-59790071 | MS.gene40028:intron | 35.0% | |
| CCCAAAAATTGAATTGCATC+TGG | - | chr1.4:59789787-59789806 | None:intergenic | 35.0% | |
| CGAACAAGTGAATTTAGACA+AGG | - | chr1.4:59788966-59788985 | None:intergenic | 35.0% | |
| CTAACGTTCATTGTAGACAT+GGG | + | chr1.4:59789216-59789235 | MS.gene40028:intron | 35.0% | |
| CTGAGATAAAAATGTGATGG+GGG | + | chr1.4:59787757-59787776 | MS.gene40028:intron | 35.0% | |
| GAGGAACAAACACCAATATT+TGG | - | chr1.4:59789823-59789842 | None:intergenic | 35.0% | |
| GCAAGGCTCTATGAAATTTA+CGG | + | chr1.4:59786868-59786887 | MS.gene40028:CDS | 35.0% | |
| GCTGAGATAAAAATGTGATG+GGG | + | chr1.4:59787756-59787775 | MS.gene40028:intron | 35.0% | |
| GTCTATTAGGAACACTCTTT+GGG | + | chr1.4:59786789-59786808 | MS.gene40028:CDS | 35.0% | |
| TAAAAGAGCCTTGGGATTAT+TGG | + | chr1.4:59788709-59788728 | MS.gene40028:intron | 35.0% | |
| TAACCAATTCAATGAGGCAA+TGG | + | chr1.4:59786958-59786977 | MS.gene40028:intron | 35.0% | |
| TAACGTTCATTGTAGACATG+GGG | + | chr1.4:59789217-59789236 | MS.gene40028:intron | 35.0% | |
| TAGGATATTACTGTAACACG+AGG | + | chr1.4:59787471-59787490 | MS.gene40028:intron | 35.0% | |
| TCACTTCAAGAGTTTAGAAG+AGG | - | chr1.4:59787997-59788016 | None:intergenic | 35.0% | |
| TCCTCAATGTTGTCAAATAG+TGG | - | chr1.4:59787340-59787359 | None:intergenic | 35.0% | |
| TGTAAGAAACCCATTGATAG+TGG | + | chr1.4:59789740-59789759 | MS.gene40028:intron | 35.0% | |
| TTGCGAATTGCAGAAAATAG+CGG | + | chr1.4:59787200-59787219 | MS.gene40028:intron | 35.0% | |
| ! | AAAAATGTGATGGGGGAAAT+GGG | + | chr1.4:59787764-59787783 | MS.gene40028:intron | 35.0% |
| ! | AGGAACGAATATATGATGGA+AGG | - | chr1.4:59789585-59789604 | None:intergenic | 35.0% |
| ! | CAAAGATTTTTCGCTTTCCA+AGG | - | chr1.4:59788441-59788460 | None:intergenic | 35.0% |
| ! | CATCACATTTTTATCTCAGC+TGG | - | chr1.4:59787756-59787775 | None:intergenic | 35.0% |
| ! | CTACACAACAACTGATTCAT+TGG | + | chr1.4:59787724-59787743 | MS.gene40028:intron | 35.0% |
| ! | TAAAAATGTGATGGGGGAAA+TGG | + | chr1.4:59787763-59787782 | MS.gene40028:intron | 35.0% |
| !! | ACAGTGATCAATGTTGGTTT+GGG | + | chr1.4:59786670-59786689 | MS.gene40028:CDS | 35.0% |
| !! | ATATATGATGGAAGGTGTCT+TGG | - | chr1.4:59789577-59789596 | None:intergenic | 35.0% |
| !! | TGAAGCTTTAGAAGTTGAGA+AGG | + | chr1.4:59786744-59786763 | MS.gene40028:CDS | 35.0% |
| !! | TTTCTTTTCTGGCGAAATCT+TGG | - | chr1.4:59787548-59787567 | None:intergenic | 35.0% |
| !!! | ATCGTTTAGCTTTTCTATGG+GGG | - | chr1.4:59788031-59788050 | None:intergenic | 35.0% |
| !!! | GAACTTTTGGGTTAGATTCT+AGG | + | chr1.4:59788404-59788423 | MS.gene40028:intron | 35.0% |
| AACAACCACACCTATTCTCA+TGG | + | chr1.4:59788862-59788881 | MS.gene40028:intron | 40.0% | |
| AACGTTCATTGTAGACATGG+GGG | + | chr1.4:59789218-59789237 | MS.gene40028:intron | 40.0% | |
| AAGGGAGGTTTAATTGCTGA+AGG | + | chr1.4:59788667-59788686 | MS.gene40028:intron | 40.0% | |
| AATTTCATAGAGCCTTGCCA+AGG | - | chr1.4:59786866-59786885 | None:intergenic | 40.0% | |
| ACAACTCGCAGGAAACTATA+TGG | - | chr1.4:59787101-59787120 | None:intergenic | 40.0% | |
| AGGCAATCATCCATGAGAAT+AGG | - | chr1.4:59788875-59788894 | None:intergenic | 40.0% | |
| ATCATCCATGAGAATAGGTG+TGG | - | chr1.4:59788870-59788889 | None:intergenic | 40.0% | |
| ATGAGAATAGGTGTGGTTGT+TGG | - | chr1.4:59788863-59788882 | None:intergenic | 40.0% | |
| ATTCAATGAGGCAATGGAAG+TGG | + | chr1.4:59786964-59786983 | MS.gene40028:intron | 40.0% | |
| ATTTCATAGAGCCTTGCCAA+GGG | - | chr1.4:59786865-59786884 | None:intergenic | 40.0% | |
| CTCTCAGATCCACTATCAAT+GGG | - | chr1.4:59789752-59789771 | None:intergenic | 40.0% | |
| CTGGGAGCTTAGATATCATA+TGG | - | chr1.4:59787639-59787658 | None:intergenic | 40.0% | |
| CTTCCATTGCCTCATTGAAT+TGG | - | chr1.4:59786964-59786983 | None:intergenic | 40.0% | |
| CTTCTTTGTCTTGGGATTGT+TGG | - | chr1.4:59789186-59789205 | None:intergenic | 40.0% | |
| GACAACATTGAGGACTGTTA+TGG | + | chr1.4:59787346-59787365 | MS.gene40028:intron | 40.0% | |
| GAGAATAGTCTAGCAAACCT+TGG | - | chr1.4:59788931-59788950 | None:intergenic | 40.0% | |
| GAGTAGACTCTTCTTTGTCT+TGG | - | chr1.4:59789195-59789214 | None:intergenic | 40.0% | |
| GATTCACCAATTCACCTGAT+TGG | - | chr1.4:59790104-59790123 | None:intergenic | 40.0% | |
| GCCACTATTTGACAACATTG+AGG | + | chr1.4:59787336-59787355 | MS.gene40028:intron | 40.0% | |
| TATCTTGTCTCAGTGTCACA+AGG | + | chr1.4:59787385-59787404 | MS.gene40028:intron | 40.0% | |
| TCCATTGTGCATCGAAAATG+TGG | - | chr1.4:59790126-59790145 | None:intergenic | 40.0% | |
| TCGAAACTTTATGTGTCCCA+AGG | + | chr1.4:59788911-59788930 | MS.gene40028:intron | 40.0% | |
| TCGAATTCATAACTCCCTAG+CGG | - | chr1.4:59788604-59788623 | None:intergenic | 40.0% | |
| TCTCATGGATGATTGCCTTT+GGG | + | chr1.4:59788877-59788896 | MS.gene40028:intron | 40.0% | |
| TGAATAAGGTTCAGGATCTG+TGG | - | chr1.4:59788321-59788340 | None:intergenic | 40.0% | |
| TTCTCATGGATGATTGCCTT+TGG | + | chr1.4:59788876-59788895 | MS.gene40028:intron | 40.0% | |
| TTTGCTCCTCATCTTTGTTC+TGG | + | chr1.4:59789957-59789976 | MS.gene40028:intron | 40.0% | |
| ! | ACTTCTGTTGTGGTTTTTCC+AGG | + | chr1.4:59790180-59790199 | MS.gene40028:intron | 40.0% |
| ! | CACAGTGATCAATGTTGGTT+TGG | + | chr1.4:59786669-59786688 | MS.gene40028:CDS | 40.0% |
| ! | CTAAAACTCTTTTGGTCTCC+CGG | - | chr1.4:59788372-59788391 | None:intergenic | 40.0% |
| ! | GGGAGACCAAAAGAGTTTTA+GGG | + | chr1.4:59788371-59788390 | MS.gene40028:intron | 40.0% |
| ! | TAAAACTCTTTTGGTCTCCC+GGG | - | chr1.4:59788371-59788390 | None:intergenic | 40.0% |
| ! | TCATTGCTAGCTTGCATGAT+AGG | + | chr1.4:59787053-59787072 | MS.gene40028:intron | 40.0% |
| ! | TCCACATTTTCGATGCACAA+TGG | + | chr1.4:59790122-59790141 | MS.gene40028:intron | 40.0% |
| !! | AAAAGAGTATCGTTCCGCTA+GGG | + | chr1.4:59788587-59788606 | MS.gene40028:intron | 40.0% |
| !! | TAAAAGAGTATCGTTCCGCT+AGG | + | chr1.4:59788586-59788605 | MS.gene40028:intron | 40.0% |
| !! | TCTCATTTGTTGTGCAATCC+CGG | + | chr1.4:59788350-59788369 | MS.gene40028:intron | 40.0% |
| !! | TGGGCTAAGCCATTGTTTTA+AGG | - | chr1.4:59787572-59787591 | None:intergenic | 40.0% |
| !! | TTAGGAACACTCTTTGGGAT+TGG | + | chr1.4:59786794-59786813 | MS.gene40028:CDS | 40.0% |
| !! | TTTGGGTTAGATTCTAGGGT+TGG | + | chr1.4:59788409-59788428 | MS.gene40028:intron | 40.0% |
| !!! | CCTTTTGCTGCTTTTTCTTC+GGG | - | chr1.4:59789419-59789438 | None:intergenic | 40.0% |
| !!! | GCCTTTTGCTGCTTTTTCTT+CGG | - | chr1.4:59789420-59789439 | None:intergenic | 40.0% |
| !!! | GGTGCTGTTTTTGCAATTCT+GGG | + | chr1.4:59786691-59786710 | MS.gene40028:CDS | 40.0% |
| ACATTTCGCTCCTCAACTAC+TGG | - | chr1.4:59787822-59787841 | None:intergenic | 45.0% | |
| AGAATAGGTGTGGTTGTTGG+AGG | - | chr1.4:59788860-59788879 | None:intergenic | 45.0% | |
| AGGAAAGATGCTAATCCAGC+TGG | + | chr1.4:59790213-59790232 | MS.gene40028:CDS | 45.0% | |
| ATGGGGGAAATGGGAAATAG+AGG | + | chr1.4:59787773-59787792 | MS.gene40028:intron | 45.0% | |
| CAATGGCTTAGCCCAAAATC+AGG | + | chr1.4:59787577-59787596 | MS.gene40028:intron | 45.0% | |
| CAGTGTCACAAGGTCCAATT+TGG | + | chr1.4:59787395-59787414 | MS.gene40028:intron | 45.0% | |
| CCCGAAGAAAAAGCAGCAAA+AGG | + | chr1.4:59789416-59789435 | MS.gene40028:intron | 45.0% | |
| GAATAGGTGTGGTTGTTGGA+GGG | - | chr1.4:59788859-59788878 | None:intergenic | 45.0% | |
| GCTCTCAGATCCACTATCAA+TGG | - | chr1.4:59789753-59789772 | None:intergenic | 45.0% | |
| GCTTAGCCCAAAATCAGGTT+AGG | + | chr1.4:59787582-59787601 | MS.gene40028:intron | 45.0% | |
| GGAAATAGAGGGAGAAAGCA+GGG | + | chr1.4:59787785-59787804 | MS.gene40028:intron | 45.0% | |
| GGTGTCTTGGAGCAAAAGAA+AGG | - | chr1.4:59789564-59789583 | None:intergenic | 45.0% | |
| TGGAGCAAAAGAAAGGAGTC+TGG | - | chr1.4:59789557-59789576 | None:intergenic | 45.0% | |
| TGGGGGAAATGGGAAATAGA+GGG | + | chr1.4:59787774-59787793 | MS.gene40028:intron | 45.0% | |
| TTACCAGGTGCAGATTGTTG+AGG | - | chr1.4:59786907-59786926 | None:intergenic | 45.0% | |
| ! | AAAGGAGTCTGGAGCTGATT+TGG | - | chr1.4:59789546-59789565 | None:intergenic | 45.0% |
| ! | AACACAAAAGCACAACTCGC+AGG | - | chr1.4:59787112-59787131 | None:intergenic | 45.0% |
| ! | AGGGCTTCCTAACCTGATTT+TGG | - | chr1.4:59787592-59787611 | None:intergenic | 45.0% |
| ! | CGGGAGACCAAAAGAGTTTT+AGG | + | chr1.4:59788370-59788389 | MS.gene40028:intron | 45.0% |
| ! | GGATTAGCATCTTTCCTCAC+AGG | - | chr1.4:59790210-59790229 | None:intergenic | 45.0% |
| ! | GGGCTTCCTAACCTGATTTT+GGG | - | chr1.4:59787591-59787610 | None:intergenic | 45.0% |
| ! | GTTTAAGGCTTGGCTTGATC+CGG | + | chr1.4:59789141-59789160 | MS.gene40028:intron | 45.0% |
| ! | TTTTTCCAGGAGATCCTGTG+AGG | + | chr1.4:59790193-59790212 | MS.gene40028:intron | 45.0% |
| !! | ATACACTCACTGACTTCGAG+AGG | - | chr1.4:59788836-59788855 | None:intergenic | 45.0% |
| !! | CTCATTTGTTGTGCAATCCC+GGG | + | chr1.4:59788351-59788370 | MS.gene40028:intron | 45.0% |
| !! | GTTACTCTCTGAAGCTCTCT+TGG | - | chr1.4:59786650-59786669 | None:intergenic | 45.0% |
| !! | TCTAGGGTTGGTAAACACCT+TGG | + | chr1.4:59788421-59788440 | MS.gene40028:intron | 45.0% |
| !!! | ATTATTTTGGCTGGACCAGC+TGG | - | chr1.4:59790231-59790250 | None:intergenic | 45.0% |
| !!! | GGGTGCTGTTTTTGCAATTC+TGG | + | chr1.4:59786690-59786709 | MS.gene40028:CDS | 45.0% |
| ATAGAGGGAGAAAGCAGGGT+TGG | + | chr1.4:59787789-59787808 | MS.gene40028:intron | 50.0% | |
| ATTGCATCTGGAGGAGAGAG+CGG | - | chr1.4:59789775-59789794 | None:intergenic | 50.0% | |
| GAACGCGGAGGGTTTGATAA+TGG | - | chr1.4:59789043-59789062 | None:intergenic | 50.0% | |
| GGGAAATAGAGGGAGAAAGC+AGG | + | chr1.4:59787784-59787803 | MS.gene40028:intron | 50.0% | |
| TCAAACTGTGGAAGCGAACG+CGG | - | chr1.4:59789058-59789077 | None:intergenic | 50.0% | |
| TCGATCTTCAAGGGTCCCAA+AGG | - | chr1.4:59788895-59788914 | None:intergenic | 50.0% | |
| TCTTTCCTCACAGGATCTCC+TGG | - | chr1.4:59790201-59790220 | None:intergenic | 50.0% | |
| TGGAGGCAAACCAGTAGTTG+AGG | + | chr1.4:59787809-59787828 | MS.gene40028:intron | 50.0% | |
| TTCGATAGACCGTGCACTTG+CGG | - | chr1.4:59788556-59788575 | None:intergenic | 50.0% | |
| TTTCACAGTCCTCACCCACA+AGG | + | chr1.4:59788247-59788266 | MS.gene40028:intron | 50.0% | |
| AAGCCCCCAAGTCAGAAGCT+TGG | - | chr1.4:59789489-59789508 | None:intergenic | 55.0% | |
| ACAGTCCTCACCCACAAGGT+GGG | + | chr1.4:59788251-59788270 | MS.gene40028:intron | 55.0% | |
| AGCCGAATCAGACGCTGCTT+CGG | - | chr1.4:59786836-59786855 | None:intergenic | 55.0% | |
| CCAGGTGCAGATTGTTGAGG+AGG | - | chr1.4:59786904-59786923 | None:intergenic | 55.0% | |
| CCCAAGTCAGAAGCTTGGCA+CGG | - | chr1.4:59789484-59789503 | None:intergenic | 55.0% | |
| CCGTGCCAAGCTTCTGACTT+GGG | + | chr1.4:59789481-59789500 | MS.gene40028:intron | 55.0% | |
| CCTCCTCAACAATCTGCACC+TGG | + | chr1.4:59786901-59786920 | MS.gene40028:CDS | 55.0% | |
| GCAAAAGGCCTTCTGTGAGG+TGG | + | chr1.4:59789431-59789450 | MS.gene40028:intron | 55.0% | |
| GCAGCAAAAGGCCTTCTGTG+AGG | + | chr1.4:59789428-59789447 | MS.gene40028:intron | 55.0% | |
| TAGACCGTGCACTTGCGGTT+TGG | - | chr1.4:59788551-59788570 | None:intergenic | 55.0% | |
| TAGAGCCTTGCCAAGGGAAC+TGG | - | chr1.4:59786859-59786878 | None:intergenic | 55.0% | |
| TAGGCCAAACCGCAAGTGCA+CGG | + | chr1.4:59788544-59788563 | MS.gene40028:intron | 55.0% | |
| TCCAACTGCCACCCGCTTTA+AGG | - | chr1.4:59788216-59788235 | None:intergenic | 55.0% | |
| TGCCGAAGCAGCGTCTGATT+CGG | + | chr1.4:59786831-59786850 | MS.gene40028:CDS | 55.0% | |
| ! | CGTGCCAAGCTTCTGACTTG+GGG | + | chr1.4:59789482-59789501 | MS.gene40028:intron | 55.0% |
| ! | TGATTCGGCTCCAGTTCCCT+TGG | + | chr1.4:59786846-59786865 | MS.gene40028:CDS | 55.0% |
| !! | GTGCCAAGCTTCTGACTTGG+GGG | + | chr1.4:59789483-59789502 | MS.gene40028:intron | 55.0% |
| AACTGTGGAAGCGAACGCGG+AGG | - | chr1.4:59789055-59789074 | None:intergenic | 60.0% | |
| ACTGTGGAAGCGAACGCGGA+GGG | - | chr1.4:59789054-59789073 | None:intergenic | 60.0% | |
| AGGCCTTCTGTGAGGTGGCA+CGG | + | chr1.4:59789436-59789455 | MS.gene40028:intron | 60.0% | |
| CACAGTCCTCACCCACAAGG+TGG | + | chr1.4:59788250-59788269 | MS.gene40028:intron | 60.0% | |
| GAGGGAGAAAGCAGGGTTGG+AGG | + | chr1.4:59787792-59787811 | MS.gene40028:intron | 60.0% | |
| GCCCGTGCCAATATGTGGCA+CGG | - | chr1.4:59789462-59789481 | None:intergenic | 60.0% | |
| GCCGTGCCAAGCTTCTGACT+TGG | + | chr1.4:59789480-59789499 | MS.gene40028:intron | 60.0% | |
| GCCGTGCCACATATTGGCAC+GGG | + | chr1.4:59789458-59789477 | MS.gene40028:intron | 60.0% | |
| GCCTTAAAGCGGGTGGCAGT+TGG | + | chr1.4:59788212-59788231 | MS.gene40028:intron | 60.0% | |
| GGCCGTGCCACATATTGGCA+CGG | + | chr1.4:59789457-59789476 | MS.gene40028:intron | 60.0% | |
| TAGCTATTGCCCCACCCGCA+AGG | + | chr1.4:59788177-59788196 | MS.gene40028:intron | 60.0% | |
| TCCCAGCAGGGGCCTTAAAG+CGG | + | chr1.4:59788201-59788220 | MS.gene40028:intron | 60.0% | |
| TCCTCACCCACAAGGTGGGT+AGG | + | chr1.4:59788255-59788274 | MS.gene40028:intron | 60.0% | |
| ACCCACAAGGTGGGTAGGCC+TGG | + | chr1.4:59788260-59788279 | MS.gene40028:intron | 65.0% | |
| AGCAGGGGCCTTAAAGCGGG+TGG | + | chr1.4:59788205-59788224 | MS.gene40028:intron | 65.0% | |
| CCCAGCAGGGGCCTTAAAGC+GGG | + | chr1.4:59788202-59788221 | MS.gene40028:intron | 65.0% | |
| CGGCTCCAGTTCCCTTGGCA+AGG | + | chr1.4:59786851-59786870 | MS.gene40028:CDS | 65.0% | |
| GCACGGCCCGTGCCAATATG+TGG | - | chr1.4:59789467-59789486 | None:intergenic | 65.0% | |
| GCCAGGCCTACCCACCTTGT+GGG | - | chr1.4:59788264-59788283 | None:intergenic | 65.0% | |
| GCCTACCCACCTTGTGGGTG+AGG | - | chr1.4:59788259-59788278 | None:intergenic | 65.0% | |
| GGCACGGCCGTGCCACATAT+TGG | + | chr1.4:59789452-59789471 | MS.gene40028:intron | 65.0% | |
| !! | ACCCGCTTTAAGGCCCCTGC+TGG | - | chr1.4:59788206-59788225 | None:intergenic | 65.0% |
| !! | CCCGCTTTAAGGCCCCTGCT+GGG | - | chr1.4:59788205-59788224 | None:intergenic | 65.0% |
| ACCCGCAAGGCTCCCAGCAG+GGG | + | chr1.4:59788190-59788209 | MS.gene40028:intron | 70.0% | |
| CACCCGCAAGGCTCCCAGCA+GGG | + | chr1.4:59788189-59788208 | MS.gene40028:intron | 70.0% | |
| CGGCCGTGCCACCTCACAGA+AGG | - | chr1.4:59789442-59789461 | None:intergenic | 70.0% | |
| CTGCTGGGAGCCTTGCGGGT+GGG | - | chr1.4:59788190-59788209 | None:intergenic | 70.0% | |
| GATCTGTGGCAGCCGCCTCG+CGG | - | chr1.4:59788307-59788326 | None:intergenic | 70.0% | |
| GGCCAGGCCTACCCACCTTG+TGG | - | chr1.4:59788265-59788284 | None:intergenic | 70.0% | |
| TGCTGGGAGCCTTGCGGGTG+GGG | - | chr1.4:59788189-59788208 | None:intergenic | 70.0% | |
| CCACCCGCAAGGCTCCCAGC+AGG | + | chr1.4:59788188-59788207 | MS.gene40028:intron | 75.0% | |
| CCTGCTGGGAGCCTTGCGGG+TGG | - | chr1.4:59788191-59788210 | None:intergenic | 75.0% | |
| GCCCCTGCTGGGAGCCTTGC+GGG | - | chr1.4:59788194-59788213 | None:intergenic | 75.0% | |
| GGACGGAGCCATCCGCGAGG+CGG | + | chr1.4:59788292-59788311 | MS.gene40028:intron | 75.0% | |
| GGATGGCTCCGTCCGCGTCG+CGG | - | chr1.4:59788286-59788305 | None:intergenic | 75.0% | |
| GGCCCCTGCTGGGAGCCTTG+CGG | - | chr1.4:59788195-59788214 | None:intergenic | 75.0% | |
| TGTGGCAGCCGCCTCGCGGA+TGG | - | chr1.4:59788303-59788322 | None:intergenic | 75.0% | |
| ! | AGGCCTGGCCGCGACGCGGA+CGG | + | chr1.4:59788275-59788294 | MS.gene40028:intron | 80.0% |
| ! | CGCGGACGGAGCCATCCGCG+AGG | + | chr1.4:59788289-59788308 | MS.gene40028:intron | 80.0% |
| ! | GGGTAGGCCTGGCCGCGACG+CGG | + | chr1.4:59788271-59788290 | MS.gene40028:intron | 80.0% |
| ! | GCTCCGTCCGCGTCGCGGCC+AGG | - | chr1.4:59788281-59788300 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 59786616 | 59790257 | 59786616 | ID=MS.gene40028 |
| chr1.4 | mRNA | 59786616 | 59790257 | 59786616 | ID=MS.gene40028.t1;Parent=MS.gene40028 |
| chr1.4 | exon | 59786616 | 59786922 | 59786616 | ID=MS.gene40028.t1.exon1;Parent=MS.gene40028.t1 |
| chr1.4 | CDS | 59786616 | 59786922 | 59786616 | ID=cds.MS.gene40028.t1;Parent=MS.gene40028.t1 |
| chr1.4 | exon | 59790202 | 59790257 | 59790202 | ID=MS.gene40028.t1.exon2;Parent=MS.gene40028.t1 |
| chr1.4 | CDS | 59790202 | 59790257 | 59790202 | ID=cds.MS.gene40028.t1;Parent=MS.gene40028.t1 |
| Gene Sequence |
| Protein sequence |
