Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40335.t1 | XP_013461938.1 | 99.8 | 532 | 1 | 0 | 1 | 532 | 1 | 532 | 1.80E-278 | 968 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40335.t1 | Q9LV21 | 85.8 | 536 | 72 | 1 | 1 | 532 | 1 | 536 | 5.5e-252 | 871.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40335.t1 | A0A072V3N8 | 99.8 | 532 | 1 | 0 | 1 | 532 | 1 | 532 | 1.3e-278 | 968.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058827 | MS.gene40335 | 0.84046 | 8.58E-58 | -1.69E-46 |
| MS.gene058828 | MS.gene40335 | 0.805102 | 1.57E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40335.t1 | MTR_3g109925 | 99.812 | 532 | 1 | 0 | 1 | 532 | 1 | 532 | 0.0 | 1070 |
| MS.gene40335.t1 | MTR_3g109925 | 85.150 | 532 | 22 | 5 | 1 | 532 | 1 | 475 | 0.0 | 877 |
| MS.gene40335.t1 | MTR_8g105970 | 73.740 | 377 | 39 | 7 | 124 | 495 | 32 | 353 | 0.0 | 520 |
| MS.gene40335.t1 | MTR_3g086330 | 37.500 | 512 | 307 | 7 | 24 | 530 | 28 | 531 | 1.62e-103 | 321 |
| MS.gene40335.t1 | MTR_7g113470 | 34.816 | 517 | 318 | 7 | 20 | 530 | 14 | 517 | 3.12e-89 | 284 |
| MS.gene40335.t1 | MTR_7g067470 | 35.029 | 511 | 313 | 7 | 26 | 530 | 20 | 517 | 1.79e-88 | 282 |
| MS.gene40335.t1 | MTR_8g088270 | 34.476 | 525 | 316 | 9 | 24 | 529 | 19 | 534 | 1.03e-84 | 273 |
| MS.gene40335.t1 | MTR_5g087560 | 32.877 | 511 | 323 | 8 | 28 | 529 | 27 | 526 | 2.59e-79 | 259 |
| MS.gene40335.t1 | MTR_2g013540 | 30.528 | 511 | 344 | 7 | 25 | 530 | 20 | 524 | 7.56e-73 | 242 |
| MS.gene40335.t1 | MTR_6g032870 | 28.571 | 511 | 351 | 5 | 23 | 529 | 20 | 520 | 7.51e-69 | 231 |
| MS.gene40335.t1 | MTR_1g030650 | 27.626 | 514 | 358 | 5 | 23 | 532 | 23 | 526 | 1.49e-68 | 230 |
| MS.gene40335.t1 | MTR_7g406870 | 27.519 | 516 | 347 | 10 | 29 | 529 | 22 | 525 | 1.04e-50 | 182 |
| MS.gene40335.t1 | MTR_2g013540 | 28.534 | 382 | 259 | 8 | 154 | 530 | 3 | 375 | 3.07e-35 | 137 |
| MS.gene40335.t1 | MTR_4g057020 | 57.658 | 111 | 13 | 1 | 294 | 404 | 54 | 130 | 9.03e-29 | 111 |
| MS.gene40335.t1 | MTR_7g406870 | 25.647 | 425 | 289 | 10 | 120 | 529 | 1 | 413 | 1.24e-27 | 115 |
| MS.gene40335.t1 | MTR_8g010750 | 25.366 | 410 | 206 | 12 | 27 | 383 | 30 | 392 | 3.81e-14 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40335.t1 | AT3G18190 | 87.873 | 536 | 61 | 1 | 1 | 532 | 1 | 536 | 0.0 | 964 |
| MS.gene40335.t1 | AT1G24510 | 38.447 | 515 | 304 | 7 | 21 | 530 | 25 | 531 | 2.13e-104 | 323 |
| MS.gene40335.t1 | AT1G24510 | 37.553 | 474 | 283 | 7 | 62 | 530 | 13 | 478 | 1.79e-89 | 283 |
| MS.gene40335.t1 | AT1G24510 | 36.933 | 463 | 279 | 7 | 73 | 530 | 1 | 455 | 9.21e-84 | 268 |
| MS.gene40335.t1 | AT3G20050 | 33.898 | 531 | 323 | 9 | 18 | 529 | 13 | 534 | 9.03e-83 | 268 |
| MS.gene40335.t1 | AT5G20890 | 33.656 | 517 | 324 | 7 | 20 | 530 | 14 | 517 | 6.74e-82 | 265 |
| MS.gene40335.t1 | AT3G11830 | 32.485 | 511 | 325 | 7 | 28 | 529 | 27 | 526 | 1.74e-76 | 251 |
| MS.gene40335.t1 | AT3G11830 | 32.485 | 511 | 323 | 8 | 28 | 529 | 27 | 524 | 1.02e-74 | 247 |
| MS.gene40335.t1 | AT3G03960 | 28.817 | 524 | 357 | 7 | 14 | 532 | 17 | 529 | 1.01e-71 | 239 |
| MS.gene40335.t1 | AT5G26360 | 31.311 | 511 | 340 | 7 | 25 | 530 | 20 | 524 | 2.55e-71 | 238 |
| MS.gene40335.t1 | AT5G16070 | 29.594 | 517 | 324 | 13 | 30 | 520 | 23 | 525 | 6.90e-53 | 188 |
| MS.gene40335.t1 | AT3G02530 | 28.794 | 514 | 333 | 11 | 30 | 520 | 23 | 526 | 3.28e-51 | 183 |
Find 119 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAAGATTGTGAAGATTTC+TGG | 0.204894 | 3.4:+94720026 | MS.gene40335:CDS |
| TGTGAAGATTTCTGGTATTA+AGG | 0.209465 | 3.4:+94720034 | MS.gene40335:CDS |
| TCTTGCTAAAGCTAAGATTT+TGG | 0.234466 | 3.4:+94719866 | MS.gene40335:CDS |
| GATTTCTGGTATTAAGGATA+TGG | 0.239423 | 3.4:+94720040 | MS.gene40335:CDS |
| ATCGTCTTTGCGTTTGTTAT+CGG | 0.257624 | 3.4:-94718986 | None:intergenic |
| AGGGATGATTAAGAAGATTA+AGG | 0.275419 | 3.4:+94719770 | MS.gene40335:CDS |
| GCATTCTCAGCAAGGGTATA+TGG | 0.307049 | 3.4:-94720299 | None:intergenic |
| CTTGTGGAAGAGCTTTCTCT+TGG | 0.336541 | 3.4:+94719999 | MS.gene40335:CDS |
| TCACGGAGATCCACCATTTC+CGG | 0.339036 | 3.4:-94719510 | None:intergenic |
| AGCAGCGGAGTCTTGAGATT+TGG | 0.347607 | 3.4:-94719196 | None:intergenic |
| CTCTGTTCTATATCTGTCTT+AGG | 0.348731 | 3.4:-94719684 | None:intergenic |
| TGTCAAGGCAATTGGGTGCT+TGG | 0.354279 | 3.4:+94720210 | MS.gene40335:CDS |
| ATCGGTGTAGGATTCGGTTT+TGG | 0.362816 | 3.4:-94718968 | None:intergenic |
| TCTCACCGCCATGGCTGTTC+CGG | 0.362983 | 3.4:+94719353 | MS.gene40335:CDS |
| GATAGAGCTGTCAAGGCAAT+TGG | 0.370145 | 3.4:+94720202 | MS.gene40335:CDS |
| TTGTGGAAGAGCTTTCTCTT+GGG | 0.371995 | 3.4:+94720000 | MS.gene40335:CDS |
| ATGATGCTTTGTGTGTTGTT+AGG | 0.372583 | 3.4:+94720132 | MS.gene40335:CDS |
| TTTGTTATCGGTGTAGGATT+CGG | 0.375261 | 3.4:-94718974 | None:intergenic |
| CATACCTTTGGGGCCGAGAC+TGG | 0.392090 | 3.4:-94719061 | None:intergenic |
| AATCTTAGCATTCTCCATTC+TGG | 0.394765 | 3.4:-94719634 | None:intergenic |
| GGAGGATCGGTGAGGGGCTG+CGG | 0.401126 | 3.4:-94718947 | None:intergenic |
| GTCAAGGCAATTGGGTGCTT+GGG | 0.415529 | 3.4:+94720211 | MS.gene40335:CDS |
| CGATCCCGCTAGGCCGGAAA+TGG | 0.417675 | 3.4:+94719497 | MS.gene40335:CDS |
| AGAACTGAATCAACAGCAAT+AGG | 0.421556 | 3.4:-94719465 | None:intergenic |
| AGCTCAGTAACAATTGCAAT+CGG | 0.423035 | 3.4:-94720332 | None:intergenic |
| TTTGTGTGTTGTTAGGTGTT+TGG | 0.427682 | 3.4:+94720139 | MS.gene40335:CDS |
| AAATGCTCAATATTAGCAAT+AGG | 0.434996 | 3.4:-94719948 | None:intergenic |
| ATTTCTGGTATTAAGGATAT+GGG | 0.441434 | 3.4:+94720041 | MS.gene40335:CDS |
| TTTGCGTTTGTTATCGGTGT+AGG | 0.444094 | 3.4:-94718980 | None:intergenic |
| TAGCACTTCGTTGAATAGTA+AGG | 0.456781 | 3.4:+94719413 | MS.gene40335:CDS |
| TCACGATCAGTGAGTTCAAC+CGG | 0.461390 | 3.4:-94719372 | None:intergenic |
| AACGCCGTTCGCACCAGTCT+CGG | 0.462746 | 3.4:+94719048 | MS.gene40335:CDS |
| ACCACAACTGTGCTTGTTCG+TGG | 0.463002 | 3.4:+94720068 | MS.gene40335:CDS |
| TACTGAGCTTGTGAAGGGCT+TGG | 0.463815 | 3.4:+94719572 | MS.gene40335:CDS |
| GTGATTATTCTCAGATGGAT+AGG | 0.464278 | 3.4:+94719718 | MS.gene40335:CDS |
| CAAGACTCCGCTGCTGGTGA+TGG | 0.468281 | 3.4:+94719204 | MS.gene40335:CDS |
| ATTAAGAAGATTAAGGCAAC+CGG | 0.476085 | 3.4:+94719777 | MS.gene40335:CDS |
| GAATGTGGTGCAGCCATTGC+TGG | 0.481414 | 3.4:+94720433 | MS.gene40335:CDS |
| GAAGAGCTTTCTCTTGGGGA+TGG | 0.486289 | 3.4:+94720005 | MS.gene40335:CDS |
| TCCACCATTTCCGGCCTAGC+GGG | 0.488011 | 3.4:-94719501 | None:intergenic |
| GCAATTGGGTGCTTGGGCTA+AGG | 0.488468 | 3.4:+94720217 | MS.gene40335:CDS |
| AGGCAAACAATTAAGAGTCT+TGG | 0.489277 | 3.4:-94719928 | None:intergenic |
| TGTCTCCTCCTTCTCTCTCA+TGG | 0.491398 | 3.4:+94719270 | MS.gene40335:CDS |
| TGTGGAAGAGCTTTCTCTTG+GGG | 0.491536 | 3.4:+94720001 | MS.gene40335:CDS |
| TATACCCTTGCTGAGAATGC+AGG | 0.493053 | 3.4:+94720302 | MS.gene40335:CDS |
| CAGTCTCGGCCCCAAAGGTA+TGG | 0.493521 | 3.4:+94719062 | MS.gene40335:CDS |
| AATCAACAACACATTACAAC+CGG | 0.494792 | 3.4:-94719796 | None:intergenic |
| CTGAGGAATCGTCATGCTAA+AGG | 0.500255 | 3.4:+94720353 | MS.gene40335:CDS |
| AACGGCGTTAGCGACGGAAC+GGG | 0.500736 | 3.4:-94719034 | None:intergenic |
| TGTCATCGATCCCGCTAGGC+CGG | 0.501041 | 3.4:+94719491 | MS.gene40335:CDS |
| TCAACACTGGAATCAATGTC+AGG | 0.507995 | 3.4:+94720381 | MS.gene40335:CDS |
| AAATCTCAAGACTCCGCTGC+TGG | 0.512750 | 3.4:+94719198 | MS.gene40335:CDS |
| ATAGAGCTGTCAAGGCAATT+GGG | 0.513984 | 3.4:+94720203 | MS.gene40335:CDS |
| GATTGCAGGTGGTGGTGCTC+CGG | 0.514051 | 3.4:+94720178 | MS.gene40335:CDS |
| TGCCTTGACAGCTCTATCTC+CGG | 0.516484 | 3.4:-94720197 | None:intergenic |
| GTTGGTGATGATAACTTCGT+TGG | 0.525584 | 3.4:-94719106 | None:intergenic |
| GGAACGGGCGGCGATGATGT+TGG | 0.529719 | 3.4:-94719019 | None:intergenic |
| TCCCGCTAGGCCGGAAATGG+TGG | 0.531201 | 3.4:+94719500 | MS.gene40335:CDS |
| AAGAGCTTTCTCTTGGGGAT+GGG | 0.531234 | 3.4:+94720006 | MS.gene40335:CDS |
| AACTTGCATCTTGTTGAGGA+TGG | 0.540091 | 3.4:-94719139 | None:intergenic |
| GGTTAGTGATTATTCTCAGA+TGG | 0.543811 | 3.4:+94719713 | MS.gene40335:CDS |
| ACATTTCTCGAGAAGTGCTC+CGG | 0.552049 | 3.4:-94719250 | None:intergenic |
| CGGCGATGATGTTGGATTGA+CGG | 0.559941 | 3.4:-94719011 | None:intergenic |
| GATGATAACTTCGTTGGAAG+AGG | 0.560445 | 3.4:-94719100 | None:intergenic |
| CTCCGGAGATAGAGCTGTCA+AGG | 0.563162 | 3.4:+94720195 | MS.gene40335:CDS |
| GAACGGCGTTAGCGACGGAA+CGG | 0.564350 | 3.4:-94719035 | None:intergenic |
| GGGGCCGAGACTGGTGCGAA+CGG | 0.565754 | 3.4:-94719052 | None:intergenic |
| AGTGAATCAGAGATAACAGT+AGG | 0.569565 | 3.4:-94719300 | None:intergenic |
| AAGGTTAGTCATGCTGCTGG+TGG | 0.570337 | 3.4:+94719606 | MS.gene40335:CDS |
| GGCGATGACAACAACGGTGG+TGG | 0.571260 | 3.4:-94719229 | None:intergenic |
| CGCACCAGTCTCGGCCCCAA+AGG | 0.572245 | 3.4:+94719057 | MS.gene40335:CDS |
| CCTCACACACTCTGTTGCCA+AGG | 0.573445 | 3.4:-94720474 | None:intergenic |
| TGGAACAACTTCAAGTGCCT+CGG | 0.574575 | 3.4:-94720279 | None:intergenic |
| GCTCAGTAACAATTGCAATC+GGG | 0.575791 | 3.4:-94720331 | None:intergenic |
| TCTCTGTCATCGATCCCGCT+AGG | 0.576821 | 3.4:+94719487 | MS.gene40335:CDS |
| ACCACCGTTGTTGTCATCGC+CGG | 0.577312 | 3.4:+94719231 | MS.gene40335:CDS |
| GAAGAACTTGCATCTTGTTG+AGG | 0.580248 | 3.4:-94719143 | None:intergenic |
| GGCGTTAGCGACGGAACGGG+CGG | 0.589560 | 3.4:-94719031 | None:intergenic |
| GTTGGGTTATGCTGATCTTG+TGG | 0.590393 | 3.4:+94719983 | MS.gene40335:CDS |
| GGTGGTTCCATCACCAGCAG+CGG | 0.591723 | 3.4:-94719211 | None:intergenic |
| GAATACCATGAGAGAGAAGG+AGG | 0.591885 | 3.4:-94719275 | None:intergenic |
| GCACTTGTGCTAACCAGCAA+TGG | 0.592202 | 3.4:-94720446 | None:intergenic |
| TCAAACCTGCATTCTCAGCA+AGG | 0.593910 | 3.4:-94720307 | None:intergenic |
| GAGTTCAACCGGAACAGCCA+TGG | 0.594130 | 3.4:-94719361 | None:intergenic |
| CTGTATTCGTGCATTTGCCG+AGG | 0.594695 | 3.4:+94720262 | MS.gene40335:CDS |
| GGTGCGAACGGCGTTAGCGA+CGG | 0.594895 | 3.4:-94719040 | None:intergenic |
| TGATGATACTGAGCTTGTGA+AGG | 0.595971 | 3.4:+94719566 | MS.gene40335:CDS |
| TTAGCATTCTCCATTCTGGT+AGG | 0.596904 | 3.4:-94719630 | None:intergenic |
| ACACTCTGTTGCCAAGGTGA+TGG | 0.598855 | 3.4:-94720468 | None:intergenic |
| TGCTGGTGGACCTACCAGAA+TGG | 0.600235 | 3.4:+94719620 | MS.gene40335:CDS |
| GCTAAAGGTGAGATCAACAC+TGG | 0.604820 | 3.4:+94720368 | MS.gene40335:CDS |
| TGTTCTATATCTGTCTTAGG+AGG | 0.605667 | 3.4:-94719681 | None:intergenic |
| GGTGAATACCATGAGAGAGA+AGG | 0.606764 | 3.4:-94719278 | None:intergenic |
| GAGGATGGTAGCGCCGTCGT+TGG | 0.607730 | 3.4:-94719124 | None:intergenic |
| GATGATACTGAGCTTGTGAA+GGG | 0.610892 | 3.4:+94719567 | MS.gene40335:CDS |
| TTGCAATTGTTACTGAGCTG+AGG | 0.612866 | 3.4:+94720336 | MS.gene40335:CDS |
| TCCACGAACAAGCACAGTTG+TGG | 0.612984 | 3.4:-94720069 | None:intergenic |
| GCTGCACCACATTCTCCTCA+AGG | 0.613760 | 3.4:-94720424 | None:intergenic |
| TAGCACAAGTGCCATCACCT+TGG | 0.618089 | 3.4:+94720457 | MS.gene40335:CDS |
| TCAAATTACAAACATCCTTG+AGG | 0.621720 | 3.4:+94720409 | MS.gene40335:CDS |
| AAGAAGGTTAGTCATGCTGC+TGG | 0.624743 | 3.4:+94719603 | MS.gene40335:CDS |
| ACTGGAATCAATGTCAGGAA+AGG | 0.625427 | 3.4:+94720386 | MS.gene40335:CDS |
| AAACATCCTTGAGGAGAATG+TGG | 0.628033 | 3.4:+94720418 | MS.gene40335:CDS |
| TCTTAACAATCTTCACATCA+CGG | 0.628490 | 3.4:-94719527 | None:intergenic |
| TGTTGATGTTCTCACCGCCA+TGG | 0.628840 | 3.4:+94719344 | MS.gene40335:CDS |
| AACATCAACAGCTTTAACAG+AGG | 0.629483 | 3.4:-94719331 | None:intergenic |
| GTGAAGATTGTTAAGAAGCT+CGG | 0.630785 | 3.4:+94719534 | MS.gene40335:CDS |
| TTAGGTGTTTGGTTGCCAAG+AGG | 0.631658 | 3.4:+94720150 | MS.gene40335:CDS |
| ATCCACCATTTCCGGCCTAG+CGG | 0.644279 | 3.4:-94719502 | None:intergenic |
| GTGAATCAGAGATAACAGTA+GGG | 0.649997 | 3.4:-94719299 | None:intergenic |
| CCTTGGCAACAGAGTGTGTG+AGG | 0.652881 | 3.4:+94720474 | MS.gene40335:CDS |
| CAAACCTGCATTCTCAGCAA+GGG | 0.653006 | 3.4:-94720306 | None:intergenic |
| AGATATAGAACAGAGTATTG+TGG | 0.666081 | 3.4:+94719692 | MS.gene40335:CDS |
| GAAGTTATCATCACCAACGA+CGG | 0.680075 | 3.4:+94719111 | MS.gene40335:CDS |
| TTCAACCGGAACAGCCATGG+CGG | 0.690129 | 3.4:-94719358 | None:intergenic |
| AAGATTGTTAAGAAGCTCGG+TGG | 0.695277 | 3.4:+94719537 | MS.gene40335:CDS |
| TGCTCCGGCGATGACAACAA+CGG | 0.714797 | 3.4:-94719235 | None:intergenic |
| TCCGGCGATGACAACAACGG+TGG | 0.732056 | 3.4:-94719232 | None:intergenic |
| TTGATGATATTGTAACTGTG+AGG | 0.759737 | 3.4:+94720510 | MS.gene40335:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAATGCTCAATATTAGCAAT+AGG | - | chr3.4:94719951-94719970 | None:intergenic | 25.0% |
| !!! | ATTTCTGGTATTAAGGATAT+GGG | + | chr3.4:94720041-94720060 | MS.gene40335:CDS | 25.0% |
| AATCAACAACACATTACAAC+CGG | - | chr3.4:94719799-94719818 | None:intergenic | 30.0% | |
| AGGGATGATTAAGAAGATTA+AGG | + | chr3.4:94719770-94719789 | MS.gene40335:CDS | 30.0% | |
| ATTAAGAAGATTAAGGCAAC+CGG | + | chr3.4:94719777-94719796 | MS.gene40335:CDS | 30.0% | |
| TCAAATTACAAACATCCTTG+AGG | + | chr3.4:94720409-94720428 | MS.gene40335:CDS | 30.0% | |
| TCTTAACAATCTTCACATCA+CGG | - | chr3.4:94719530-94719549 | None:intergenic | 30.0% | |
| ! | AAGAGAGGAGTTACATTTTA+GGG | + | chr3.4:94719751-94719770 | MS.gene40335:CDS | 30.0% |
| ! | ATCATTTTGTCCATACCTTT+GGG | - | chr3.4:94719075-94719094 | None:intergenic | 30.0% |
| ! | TCTTGCTAAAGCTAAGATTT+TGG | + | chr3.4:94719866-94719885 | MS.gene40335:CDS | 30.0% |
| ! | TTGATGATATTGTAACTGTG+AGG | + | chr3.4:94720510-94720529 | MS.gene40335:CDS | 30.0% |
| !! | AGATATAGAACAGAGTATTG+TGG | + | chr3.4:94719692-94719711 | MS.gene40335:CDS | 30.0% |
| !! | GATTTCTGGTATTAAGGATA+TGG | + | chr3.4:94720040-94720059 | MS.gene40335:CDS | 30.0% |
| !! | TGTGAAGATTTCTGGTATTA+AGG | + | chr3.4:94720034-94720053 | MS.gene40335:CDS | 30.0% |
| AATCTTAGCATTCTCCATTC+TGG | - | chr3.4:94719637-94719656 | None:intergenic | 35.0% | |
| AGAACTGAATCAACAGCAAT+AGG | - | chr3.4:94719468-94719487 | None:intergenic | 35.0% | |
| AGCTCAGTAACAATTGCAAT+CGG | - | chr3.4:94720335-94720354 | None:intergenic | 35.0% | |
| AGGCAAACAATTAAGAGTCT+TGG | - | chr3.4:94719931-94719950 | None:intergenic | 35.0% | |
| AGTGAATCAGAGATAACAGT+AGG | - | chr3.4:94719303-94719322 | None:intergenic | 35.0% | |
| CTCTGTTCTATATCTGTCTT+AGG | - | chr3.4:94719687-94719706 | None:intergenic | 35.0% | |
| GGTTAGTGATTATTCTCAGA+TGG | + | chr3.4:94719713-94719732 | MS.gene40335:CDS | 35.0% | |
| GTGAAGATTGTTAAGAAGCT+CGG | + | chr3.4:94719534-94719553 | MS.gene40335:CDS | 35.0% | |
| GTGAATCAGAGATAACAGTA+GGG | - | chr3.4:94719302-94719321 | None:intergenic | 35.0% | |
| GTGATTATTCTCAGATGGAT+AGG | + | chr3.4:94719718-94719737 | MS.gene40335:CDS | 35.0% | |
| TAGCACTTCGTTGAATAGTA+AGG | + | chr3.4:94719413-94719432 | MS.gene40335:CDS | 35.0% | |
| TGTTCTATATCTGTCTTAGG+AGG | - | chr3.4:94719684-94719703 | None:intergenic | 35.0% | |
| ! | AACATCAACAGCTTTAACAG+AGG | - | chr3.4:94719334-94719353 | None:intergenic | 35.0% |
| ! | ATGATGCTTTGTGTGTTGTT+AGG | + | chr3.4:94720132-94720151 | MS.gene40335:CDS | 35.0% |
| ! | GAAGAGAGGAGTTACATTTT+AGG | + | chr3.4:94719750-94719769 | MS.gene40335:CDS | 35.0% |
| ! | GATCATTTTGTCCATACCTT+TGG | - | chr3.4:94719076-94719095 | None:intergenic | 35.0% |
| ! | TCAGATGGATAGGATTTTGA+AGG | + | chr3.4:94719728-94719747 | MS.gene40335:CDS | 35.0% |
| ! | TCATTTTGTCCATACCTTTG+GGG | - | chr3.4:94719074-94719093 | None:intergenic | 35.0% |
| ! | TTTGTGTGTTGTTAGGTGTT+TGG | + | chr3.4:94720139-94720158 | MS.gene40335:CDS | 35.0% |
| ! | TTTGTTATCGGTGTAGGATT+CGG | - | chr3.4:94718977-94718996 | None:intergenic | 35.0% |
| !! | ATAGGATTTTGAAGGAAGAG+AGG | + | chr3.4:94719736-94719755 | MS.gene40335:CDS | 35.0% |
| !! | ATCGTCTTTGCGTTTGTTAT+CGG | - | chr3.4:94718989-94719008 | None:intergenic | 35.0% |
| AAACATCCTTGAGGAGAATG+TGG | + | chr3.4:94720418-94720437 | MS.gene40335:CDS | 40.0% | |
| AACTTGCATCTTGTTGAGGA+TGG | - | chr3.4:94719142-94719161 | None:intergenic | 40.0% | |
| AAGATTGTTAAGAAGCTCGG+TGG | + | chr3.4:94719537-94719556 | MS.gene40335:CDS | 40.0% | |
| ACCTGCAATCAAAAACCTCT+TGG | - | chr3.4:94720168-94720187 | None:intergenic | 40.0% | |
| ACTGGAATCAATGTCAGGAA+AGG | + | chr3.4:94720386-94720405 | MS.gene40335:CDS | 40.0% | |
| ATAGAGCTGTCAAGGCAATT+GGG | + | chr3.4:94720203-94720222 | MS.gene40335:CDS | 40.0% | |
| GAAGAACTTGCATCTTGTTG+AGG | - | chr3.4:94719146-94719165 | None:intergenic | 40.0% | |
| GAAGTTATCATCACCAACGA+CGG | + | chr3.4:94719111-94719130 | MS.gene40335:CDS | 40.0% | |
| GATGATAACTTCGTTGGAAG+AGG | - | chr3.4:94719103-94719122 | None:intergenic | 40.0% | |
| GATGATACTGAGCTTGTGAA+GGG | + | chr3.4:94719567-94719586 | MS.gene40335:CDS | 40.0% | |
| GCTCAGTAACAATTGCAATC+GGG | - | chr3.4:94720334-94720353 | None:intergenic | 40.0% | |
| GGGAAGATTGTGAAGATTTC+TGG | + | chr3.4:94720026-94720045 | MS.gene40335:CDS | 40.0% | |
| TCAACACTGGAATCAATGTC+AGG | + | chr3.4:94720381-94720400 | MS.gene40335:CDS | 40.0% | |
| TGATGATACTGAGCTTGTGA+AGG | + | chr3.4:94719566-94719585 | MS.gene40335:CDS | 40.0% | |
| TTAGCATTCTCCATTCTGGT+AGG | - | chr3.4:94719633-94719652 | None:intergenic | 40.0% | |
| TTGCAATTGTTACTGAGCTG+AGG | + | chr3.4:94720336-94720355 | MS.gene40335:CDS | 40.0% | |
| TTGTGGAAGAGCTTTCTCTT+GGG | + | chr3.4:94720000-94720019 | MS.gene40335:CDS | 40.0% | |
| ! | CATTTTCGTGCTGAGAAGTT+GGG | + | chr3.4:94719966-94719985 | MS.gene40335:CDS | 40.0% |
| ! | GAGTTCAACGAGCATTTTAG+CGG | - | chr3.4:94719175-94719194 | None:intergenic | 40.0% |
| !! | AAGAGGTTTTTGATTGCAGG+TGG | + | chr3.4:94720167-94720186 | MS.gene40335:CDS | 40.0% |
| !! | GGGCTTGGTTTTTGATAAGA+AGG | + | chr3.4:94719587-94719606 | MS.gene40335:CDS | 40.0% |
| !! | GTTGGTGATGATAACTTCGT+TGG | - | chr3.4:94719109-94719128 | None:intergenic | 40.0% |
| !! | TTTGCGTTTGTTATCGGTGT+AGG | - | chr3.4:94718983-94719002 | None:intergenic | 40.0% |
| AAGAGCTTTCTCTTGGGGAT+GGG | + | chr3.4:94720006-94720025 | MS.gene40335:CDS | 45.0% | |
| CAAACCTGCATTCTCAGCAA+GGG | - | chr3.4:94720309-94720328 | None:intergenic | 45.0% | |
| CTGAGGAATCGTCATGCTAA+AGG | + | chr3.4:94720353-94720372 | MS.gene40335:CDS | 45.0% | |
| CTTGTGGAAGAGCTTTCTCT+TGG | + | chr3.4:94719999-94720018 | MS.gene40335:CDS | 45.0% | |
| GAATACCATGAGAGAGAAGG+AGG | - | chr3.4:94719278-94719297 | None:intergenic | 45.0% | |
| GATAGAGCTGTCAAGGCAAT+TGG | + | chr3.4:94720202-94720221 | MS.gene40335:CDS | 45.0% | |
| GCTAAAGGTGAGATCAACAC+TGG | + | chr3.4:94720368-94720387 | MS.gene40335:CDS | 45.0% | |
| GGTGAATACCATGAGAGAGA+AGG | - | chr3.4:94719281-94719300 | None:intergenic | 45.0% | |
| GTTGGGTTATGCTGATCTTG+TGG | + | chr3.4:94719983-94720002 | MS.gene40335:CDS | 45.0% | |
| TATACCCTTGCTGAGAATGC+AGG | + | chr3.4:94720302-94720321 | MS.gene40335:CDS | 45.0% | |
| TCAAACCTGCATTCTCAGCA+AGG | - | chr3.4:94720310-94720329 | None:intergenic | 45.0% | |
| TCACGATCAGTGAGTTCAAC+CGG | - | chr3.4:94719375-94719394 | None:intergenic | 45.0% | |
| TGGAACAACTTCAAGTGCCT+CGG | - | chr3.4:94720282-94720301 | None:intergenic | 45.0% | |
| TGTGGAAGAGCTTTCTCTTG+GGG | + | chr3.4:94720001-94720020 | MS.gene40335:CDS | 45.0% | |
| TTAGGTGTTTGGTTGCCAAG+AGG | + | chr3.4:94720150-94720169 | MS.gene40335:CDS | 45.0% | |
| ! | AAGAAGGTTAGTCATGCTGC+TGG | + | chr3.4:94719603-94719622 | MS.gene40335:CDS | 45.0% |
| ! | AAGGTTTTGCATGGGATGGA+GGG | + | chr3.4:94720236-94720255 | MS.gene40335:CDS | 45.0% |
| ! | CTTGGGCTAAGGTTTTGCAT+GGG | + | chr3.4:94720228-94720247 | MS.gene40335:CDS | 45.0% |
| ! | GCATTCTCAGCAAGGGTATA+TGG | - | chr3.4:94720302-94720321 | None:intergenic | 45.0% |
| ! | GCATTTTCGTGCTGAGAAGT+TGG | + | chr3.4:94719965-94719984 | MS.gene40335:CDS | 45.0% |
| ! | TAAGGTTTTGCATGGGATGG+AGG | + | chr3.4:94720235-94720254 | MS.gene40335:CDS | 45.0% |
| !! | ACATTTCTCGAGAAGTGCTC+CGG | - | chr3.4:94719253-94719272 | None:intergenic | 45.0% |
| !! | AGGTTTTTGATTGCAGGTGG+TGG | + | chr3.4:94720170-94720189 | MS.gene40335:CDS | 45.0% |
| !! | ATCGGTGTAGGATTCGGTTT+TGG | - | chr3.4:94718971-94718990 | None:intergenic | 45.0% |
| !! | GCCAAGAGGTTTTTGATTGC+AGG | + | chr3.4:94720164-94720183 | MS.gene40335:CDS | 45.0% |
| !! | TTCAACGAGCATTTTAGCGG+CGG | - | chr3.4:94719172-94719191 | None:intergenic | 45.0% |
| !!! | AGGATTCGGTTTTGGAGGAT+CGG | - | chr3.4:94718963-94718982 | None:intergenic | 45.0% |
| AAATCTCAAGACTCCGCTGC+TGG | + | chr3.4:94719198-94719217 | MS.gene40335:CDS | 50.0% | |
| ACACTCTGTTGCCAAGGTGA+TGG | - | chr3.4:94720471-94720490 | None:intergenic | 50.0% | |
| ACCACAACTGTGCTTGTTCG+TGG | + | chr3.4:94720068-94720087 | MS.gene40335:CDS | 50.0% | |
| AGCAGCGGAGTCTTGAGATT+TGG | - | chr3.4:94719199-94719218 | None:intergenic | 50.0% | |
| CGGCGATGATGTTGGATTGA+CGG | - | chr3.4:94719014-94719033 | None:intergenic | 50.0% | |
| CTGTATTCGTGCATTTGCCG+AGG | + | chr3.4:94720262-94720281 | MS.gene40335:CDS | 50.0% | |
| GAAGAGCTTTCTCTTGGGGA+TGG | + | chr3.4:94720005-94720024 | MS.gene40335:CDS | 50.0% | |
| GCACTTGTGCTAACCAGCAA+TGG | - | chr3.4:94720449-94720468 | None:intergenic | 50.0% | |
| GTCAAGGCAATTGGGTGCTT+GGG | + | chr3.4:94720211-94720230 | MS.gene40335:CDS | 50.0% | |
| TACTGAGCTTGTGAAGGGCT+TGG | + | chr3.4:94719572-94719591 | MS.gene40335:CDS | 50.0% | |
| TAGCACAAGTGCCATCACCT+TGG | + | chr3.4:94720457-94720476 | MS.gene40335:CDS | 50.0% | |
| TCACGGAGATCCACCATTTC+CGG | - | chr3.4:94719513-94719532 | None:intergenic | 50.0% | |
| TCCACGAACAAGCACAGTTG+TGG | - | chr3.4:94720072-94720091 | None:intergenic | 50.0% | |
| TGCCTTGACAGCTCTATCTC+CGG | - | chr3.4:94720200-94720219 | None:intergenic | 50.0% | |
| TGTCAAGGCAATTGGGTGCT+TGG | + | chr3.4:94720210-94720229 | MS.gene40335:CDS | 50.0% | |
| TGTCTCCTCCTTCTCTCTCA+TGG | + | chr3.4:94719270-94719289 | MS.gene40335:CDS | 50.0% | |
| TGTTGATGTTCTCACCGCCA+TGG | + | chr3.4:94719344-94719363 | MS.gene40335:CDS | 50.0% | |
| ! | AAGGTTAGTCATGCTGCTGG+TGG | + | chr3.4:94719606-94719625 | MS.gene40335:CDS | 50.0% |
| ! | GCTTGGGCTAAGGTTTTGCA+TGG | + | chr3.4:94720227-94720246 | MS.gene40335:CDS | 50.0% |
| ! | GGCTAAGGTTTTGCATGGGA+TGG | + | chr3.4:94720232-94720251 | MS.gene40335:CDS | 50.0% |
| !! | GGTGTAGGATTCGGTTTTGG+AGG | - | chr3.4:94718968-94718987 | None:intergenic | 50.0% |
| !! | TCAACGAGCATTTTAGCGGC+GGG | - | chr3.4:94719171-94719190 | None:intergenic | 50.0% |
| ACCACCGTTGTTGTCATCGC+CGG | + | chr3.4:94719231-94719250 | MS.gene40335:CDS | 55.0% | |
| ATCCACCATTTCCGGCCTAG+CGG | - | chr3.4:94719505-94719524 | None:intergenic | 55.0% | |
| CCTCACACACTCTGTTGCCA+AGG | - | chr3.4:94720477-94720496 | None:intergenic | 55.0% | |
| CCTTGGCAACAGAGTGTGTG+AGG | + | chr3.4:94720474-94720493 | MS.gene40335:CDS | 55.0% | |
| CTCCGGAGATAGAGCTGTCA+AGG | + | chr3.4:94720195-94720214 | MS.gene40335:CDS | 55.0% | |
| GAATGTGGTGCAGCCATTGC+TGG | + | chr3.4:94720433-94720452 | MS.gene40335:CDS | 55.0% | |
| GAGTTCAACCGGAACAGCCA+TGG | - | chr3.4:94719364-94719383 | None:intergenic | 55.0% | |
| GCAATTGGGTGCTTGGGCTA+AGG | + | chr3.4:94720217-94720236 | MS.gene40335:CDS | 55.0% | |
| GCTGCACCACATTCTCCTCA+AGG | - | chr3.4:94720427-94720446 | None:intergenic | 55.0% | |
| TCTCTGTCATCGATCCCGCT+AGG | + | chr3.4:94719487-94719506 | MS.gene40335:CDS | 55.0% | |
| TGCTCCGGCGATGACAACAA+CGG | - | chr3.4:94719238-94719257 | None:intergenic | 55.0% | |
| TTCAACCGGAACAGCCATGG+CGG | - | chr3.4:94719361-94719380 | None:intergenic | 55.0% | |
| ! | TGCTGGTGGACCTACCAGAA+TGG | + | chr3.4:94719620-94719639 | MS.gene40335:CDS | 55.0% |
| !!! | CGGTTTTGGAGGATCGGTGA+GGG | - | chr3.4:94718957-94718976 | None:intergenic | 55.0% |
| !!! | GGTTTTGGAGGATCGGTGAG+GGG | - | chr3.4:94718956-94718975 | None:intergenic | 55.0% |
| !!! | TCGGTTTTGGAGGATCGGTG+AGG | - | chr3.4:94718958-94718977 | None:intergenic | 55.0% |
| AACGCCGTTCGCACCAGTCT+CGG | + | chr3.4:94719048-94719067 | MS.gene40335:CDS | 60.0% | |
| AACGGCGTTAGCGACGGAAC+GGG | - | chr3.4:94719037-94719056 | None:intergenic | 60.0% | |
| CAAGACTCCGCTGCTGGTGA+TGG | + | chr3.4:94719204-94719223 | MS.gene40335:CDS | 60.0% | |
| CAGTCTCGGCCCCAAAGGTA+TGG | + | chr3.4:94719062-94719081 | MS.gene40335:CDS | 60.0% | |
| GAACGGCGTTAGCGACGGAA+CGG | - | chr3.4:94719038-94719057 | None:intergenic | 60.0% | |
| GGCGATGACAACAACGGTGG+TGG | - | chr3.4:94719232-94719251 | None:intergenic | 60.0% | |
| GGTGGTTCCATCACCAGCAG+CGG | - | chr3.4:94719214-94719233 | None:intergenic | 60.0% | |
| TCCACCATTTCCGGCCTAGC+GGG | - | chr3.4:94719504-94719523 | None:intergenic | 60.0% | |
| TCCGGCGATGACAACAACGG+TGG | - | chr3.4:94719235-94719254 | None:intergenic | 60.0% | |
| TCTCACCGCCATGGCTGTTC+CGG | + | chr3.4:94719353-94719372 | MS.gene40335:CDS | 60.0% | |
| TGTCATCGATCCCGCTAGGC+CGG | + | chr3.4:94719491-94719510 | MS.gene40335:CDS | 60.0% | |
| ! | GATTGCAGGTGGTGGTGCTC+CGG | + | chr3.4:94720178-94720197 | MS.gene40335:CDS | 60.0% |
| !! | CATACCTTTGGGGCCGAGAC+TGG | - | chr3.4:94719064-94719083 | None:intergenic | 60.0% |
| CGATCCCGCTAGGCCGGAAA+TGG | + | chr3.4:94719497-94719516 | MS.gene40335:CDS | 65.0% | |
| GGAACGGGCGGCGATGATGT+TGG | - | chr3.4:94719022-94719041 | None:intergenic | 65.0% | |
| GGTGCGAACGGCGTTAGCGA+CGG | - | chr3.4:94719043-94719062 | None:intergenic | 65.0% | |
| TCCCGCTAGGCCGGAAATGG+TGG | + | chr3.4:94719500-94719519 | MS.gene40335:CDS | 65.0% | |
| ! | GAGGATGGTAGCGCCGTCGT+TGG | - | chr3.4:94719127-94719146 | None:intergenic | 65.0% |
| CGCACCAGTCTCGGCCCCAA+AGG | + | chr3.4:94719057-94719076 | MS.gene40335:CDS | 70.0% | |
| GGAGGATCGGTGAGGGGCTG+CGG | - | chr3.4:94718950-94718969 | None:intergenic | 70.0% | |
| GGCGTTAGCGACGGAACGGG+CGG | - | chr3.4:94719034-94719053 | None:intergenic | 70.0% | |
| GGGGCCGAGACTGGTGCGAA+CGG | - | chr3.4:94719055-94719074 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 94718937 | 94720535 | 94718937 | ID=MS.gene40335 |
| chr3.4 | mRNA | 94718937 | 94720535 | 94718937 | ID=MS.gene40335.t1;Parent=MS.gene40335 |
| chr3.4 | exon | 94718937 | 94720535 | 94718937 | ID=MS.gene40335.t1.exon1;Parent=MS.gene40335.t1 |
| chr3.4 | CDS | 94718937 | 94720535 | 94718937 | ID=cds.MS.gene40335.t1;Parent=MS.gene40335.t1 |
| Gene Sequence |
| Protein sequence |
