AlfalfaGEDB | MS.gene40342

M. sativa cultivar XinJiangDaYe / MS.gene40342

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40342.t1	KEH35970.1	90.8	415	33	2	16	430	170	579	2.10E-200	708.4

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40342.t1	Q9LYE3	36.3	212	125	5	225	430	352	559	6.2e-28	126.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40342.t1	A0A072V2S5	90.8	415	33	2	16	430	73	482	1.5e-200	708.4

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene40342	0.822226	2.65E-53	-1.69E-46
MS.gene050226	MS.gene40342	0.808261	3.38E-50	-1.69E-46
MS.gene050227	MS.gene40342	0.812679	3.75E-51	-1.69E-46
MS.gene050228	MS.gene40342	0.810281	1.25E-50	-1.69E-46
MS.gene050623	MS.gene40342	-0.812021	5.23E-51	-1.69E-46
MS.gene050780	MS.gene40342	0.813946	1.98E-51	-1.69E-46
MS.gene050807	MS.gene40342	0.800396	1.47E-48	-1.69E-46
MS.gene051210	MS.gene40342	0.823287	1.50E-53	-1.69E-46
MS.gene052012	MS.gene40342	0.804986	1.66E-49	-1.69E-46
MS.gene052020	MS.gene40342	0.802174	6.36E-49	-1.69E-46

Showing 1 to 10 of 27 entries

Previous1 2 3Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40342.t1	MTR_3g109470	90.843	415	33	2	16	430	73	482	0.0	729
MS.gene40342.t1	MTR_3g109470	90.843	415	33	2	16	430	170	579	0.0	727
MS.gene40342.t1	MTR_3g109470	90.843	415	33	2	16	430	170	579	0.0	726
MS.gene40342.t1	MTR_2g062470	46.226	106	57	0	325	430	353	458	1.00e-26	112

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40342.t1	AT5G11470	49.107	112	57	0	319	430	448	559	1.32e-35	139
MS.gene40342.t1	AT5G11470	49.107	112	57	0	319	430	448	559	2.81e-35	139
MS.gene40342.t1	AT3G15605	41.667	96	56	0	333	428	207	302	3.67e-16	80.5
MS.gene40342.t1	AT3G15605	41.667	96	56	0	333	428	207	302	3.67e-16	80.5
MS.gene40342.t1	AT3G15605	41.667	96	56	0	333	428	291	386	9.88e-16	79.3
MS.gene40342.t1	AT3G15605	40.816	98	56	1	333	428	207	304	1.92e-14	75.1

Showing 1 to 6 of 6 entries

Previous1Next

Find 90 sgRNAs with CRISPR-Local

Find 441 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCCCATTCTCTTTCTCTT+TGG	0.280643	3.3:-89847026	None:intergenic
AAGATTGATTCAGAAATAGG+CGG	0.695694	3.3:+89847178	MS.gene40342:CDS
AAGCAAATGGTTTAAGCCAA+TGG	0.526651	3.3:+89852229	MS.gene40342:CDS
AAGGACACTAGTAAATCAAA+TGG	0.518195	3.3:+89846962	MS.gene40342:CDS
AATGGAAGGGACGTCGATGA+TGG	0.549163	3.3:+89847316	MS.gene40342:CDS
AATTTATATAGTCAAAAGCT+TGG	0.539385	3.3:+89846752	MS.gene40342:CDS
ACAAATCAACAGGCGATTGG+GGG	0.666789	3.3:+89847228	MS.gene40342:CDS
ACAACGTCAGTTAAACTCTC+TGG	0.516055	3.3:+89847379	MS.gene40342:CDS
ACAAGTTGGCGTGAAAGTCA+CGG	0.571553	3.3:+89846805	MS.gene40342:CDS
ACAATGCAAACTAAACTCTC+TGG	0.529970	3.3:+89847568	MS.gene40342:CDS

Showing 1 to 10 of 90 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAGATCCTAATAGACT+TGG	-	chr3.3:89851656-89851675	None:intergenic	30.0%
AAAGATGATTCAGTACTTCT+TGG	-	chr3.3:89851119-89851138	None:intergenic	30.0%
AAGGACACTAGTAAATCAAA+TGG	+	chr3.3:89846962-89846981	MS.gene40342:CDS	30.0%
AAGTAAAAACATAAGGGCTT+AGG	-	chr3.3:89850819-89850838	None:intergenic	30.0%
AATCAGTTTGACAAAGACAT+GGG	+	chr3.3:89849005-89849024	MS.gene40342:intron	30.0%
AATGAATTTGGTCGTGTTAA+TGG	+	chr3.3:89849213-89849232	MS.gene40342:intron	30.0%
ACTTCTGATGAAGTTAAAGA+AGG	-	chr3.3:89852494-89852513	None:intergenic	30.0%
AGATAGCTGTTATAGTGTAA+TGG	+	chr3.3:89847915-89847934	MS.gene40342:intron	30.0%
AGCAAGTATGAAGAAGATAA+TGG	-	chr3.3:89851612-89851631	None:intergenic	30.0%
AGTAAAAACATAAGGGCTTA+GGG	-	chr3.3:89850818-89850837	None:intergenic	30.0%

Showing 1 to 10 of 441 entries

Previous1 2 3 4 5…45Next

Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	89846683	89853228	89846683	ID=MS.gene40342
chr3.3	mRNA	89846683	89853228	89846683	ID=MS.gene40342.t1;Parent=MS.gene40342
chr3.3	exon	89846683	89847684	89846683	ID=MS.gene40342.t1.exon1;Parent=MS.gene40342.t1
chr3.3	CDS	89846683	89847684	89846683	ID=cds.MS.gene40342.t1;Parent=MS.gene40342.t1
chr3.3	exon	89852224	89852250	89852224	ID=MS.gene40342.t1.exon2;Parent=MS.gene40342.t1
chr3.3	CDS	89852224	89852250	89852224	ID=cds.MS.gene40342.t1;Parent=MS.gene40342.t1
chr3.3	exon	89852425	89852517	89852425	ID=MS.gene40342.t1.exon3;Parent=MS.gene40342.t1
chr3.3	CDS	89852425	89852517	89852425	ID=cds.MS.gene40342.t1;Parent=MS.gene40342.t1
chr3.3	exon	89852946	89853024	89852946	ID=MS.gene40342.t1.exon4;Parent=MS.gene40342.t1
chr3.3	CDS	89852946	89853024	89852946	ID=cds.MS.gene40342.t1;Parent=MS.gene40342.t1
chr3.3	exon	89853138	89853228	89853138	ID=MS.gene40342.t1.exon5;Parent=MS.gene40342.t1
chr3.3	CDS	89853138	89853228	89853138	ID=cds.MS.gene40342.t1;Parent=MS.gene40342.t1

Gene Sequence

>MS.gene40342

ATGATTTTGAATGATCGAATATCTTTTGAAGTTGTTTATTTAATTGTTGCAGTTAAAAATATTTTTAACAATTTATATAGTCAAAAGCTTGGCGGTCTTTCAAAACTTGGTTTAGATGAGAAACAAGTTGGCGTGAAAGTCACGGGAAGTAATGAAGCGGTGGCTCTTTCAAGTAAAAAAAACAATAAGCATTTGATTGAAAAACTAGATGGCAAGTGTTTTGATACTGTTGATTCTAAGCCATCATTGGGAGAAAAACGTACCTCTAGCCTTGGTTTAAAGGACACTAGTAAATCAAATGGTGGTTTGCACTCTATTTCCCGTGACAAGACCTTGCCTCTATCCAAAGAGAAAGAGAATGGGGTTAATAAGGCTTCTTTGGCTAAACAAAAATCATCTTCCAAACTATCACATTCCTCTAGCGATGGTTTGGAAATGGTAGGAATATCTAAAATTGGAGGAAATGTCTCCATTGATAAGACCGTTTTGAAGTCCAAGATTGATTCAGAAATAGGCGGACGTGATATTGTTGGGGTCTCCGATCGACAAATCAACAGGCGATTGGGGGAGGGCAACACCTCTGAGAAGGATAAGTACGGTACTTCTAGTGCAAAGACGACAAATAATGTTAAAAATGGAAGGGACGTCGATGATGGTGACGTGAAGGAAATCCCTTCAAAAAAGCTAAAGATTGACACAACGTCAGTTAAACTCTCTGGTGACAAGTTGGCCGACAGGCAAATTAACAAGCGATTGGAGGAGAGAAAGGCTTCTTTTAAAGAAAAATATGGCGTTTCTAGTACAAAGATAGCAAATCATATGCAAAATCAAAGGAACCATGATGATGATGTGAAGGAAGCCCCTTCGAAAAAGCTAAAGATTGACACAATGCAAACTAAACTCTCTGGTGGCAAGTTGCGTAAAGAATCGTCTACAACCTCTCCAAACTTGGGGCACAAGCAAGATTACAGTGTAACGGATGTTACTCAAAGACCTGACGTTGTAAGTTGCAAAACAAGCACTCTCATTTTGTCATGTTAATTTTTCATCTCTTCACACCTTATACCTTACTAGTTTAACAATGTTCCAATGAAGGACGTTGTCAAAATAGGGTCAACATATAATCTTAGCCTTCATCCCAATTGTGTCTTTAAAGCTTGGCTAGAAAACGATATTGCCATGCTAGTATTTCACGACATTTGTGCTTTGTCATAGGATTGCGCAGGGTTCTCAGATAGCTGTTATAGTGTAATGGAATTTAAACAAATCATTATTGTTCCTCAATACGCAATTGTTTTTGGCGTTTTGTTTGAAGTTTTGCAACAATTTGTAAAGTTAGGGGGTTAAATTGCTATATTATTTTATTAGGTGGTCGAAATCGCAACTTTTGAATTGTTAAAGGGCCAAAATACACTTGAGCCTTTAATTGTTTGTCCTGTGATAATTTTTAAGTCCAAAATTGTCTCGTTTTCTGTTTTCCAAGATTCGTATAGGCAATAATAAAAACAACTCAAATCAAAGATCCCTTATACTTTTACCATTTTAGGTCTCAATAGAGGTTTCCTTTTAAAAAATATTCATTCTAGTGTTAAACATTCTAAGCCTATACACTATCGATGAACTAGTCATTGCCATTAGATTTTTCATAGTGTTAAACATTATATCCCTTATTAGTTTTGATCGAGTGGTTGAAACAAGGGAGCAATAGAAGGAGATGGAAACCATAGAATTCAACCTGAGTGGTTGAAATGGAGGAGTGCTTCAAGTGTTTTATGTGATGAGAAAGTACCACTCAAGTTTAAGGATTTTTTTTATGTAGACCATAGAATTCAACCGACGATGTTCTACGTGACAAAGTGTTGGGTGGTGTAAACCATAGAATTCAACCTGGGTGGTTGAAATGGAGGAGTGCCTCAAATGTTTTATGTGATGAGAAAGTAGCACTCAAGTTGAAGGAATTTTTTTATGTAAACCATAGAATTCAACCAATGATGATGATCTACGAGACAAAGTGTTGGGGGGTAAAGAACCAACATGAAAATAAATTAAGCGTAGTAGAGATGAGGATTTTGTGTTGGATGTGTGGTGAAACTAGTTAAAATAAAATTAGAAATGACCACATTAGAGAGTTAGGGTTGCACCTATAGTAGAAAAGATGGTAGAAACTAAACTTAAGTGGTTTGGACATGTAGAGAAAAGACCCAGTGTATTCTATAGTAAGGCGTAAGGTGAGTCATTTTGATGGATGGGAGTCAAATCACCAGAGGTAGAGGAAAACCTAATAAAACTACGAGAGAAACTATCAAGAAGGATCTAGAGATCAATCAGTTTGACAAAGACATGGGTTTTTGACATTATGACGTCGTTTGATTCATGTAGTCGACCCCACTTAGTGGGATAAAGATTGGTTGTTGTTGTTGATTGAGTGGTGTCCTATTTTACTATCTTCTAAATATAAAGGTGAAACAAAAATGCAGTTTTATCTTTGAACTTGGTTGTGTCAAACAAACACAATGTATAACTTTTTCAAAATGAATTTGGTCGTGTTAATGGGTAAGGTGTTGAGTCACTTGAAAATGGAAAAGAATTGCTCGAGAGAAATTACACGTATCCTTGTTATTTATAACCAAGGGATTACAGTCAAATCCCTTGATTATAGGGATAAGAACTAACAAACCTAATCATATAGAGATTTACTCAACATAATATAATTAAAATTAAAATCCTATACATATCTTAACACTCCCCGTCATGGTGGTGCATATATGTGTGTGTGTGTGTGCGGGCGAGCGCGTGTGCATGTGCATGCGAGCGTGTGCGCATTAAGCTTCTTACATATATAAGATATCCTCAGGCCTCTAGCAATTTGGTATAGATATCAACCAACTGATCATTAGAGATCACCAAGGATGTAACTATTTGCTTGGAAAGAATTTTTTAGAACGAAGTGACAATCCATCTTTATGTGCTTGGTCCGCTCATAGAAGATATGATTAGACGCGATATGTAAAGCTGCTTGGTTATCACAAATGAGACTCATTGTCTTAAACTTACAAACCTTTTACCCATCAAGCAGTTGTTTCAACCAAATAAGTTCACAAGCAGTGACAACTATGAATTAGTTATGTGAAATGTTTGTGGGGTAGTTGAACCCAAAAACCCTTATCTCTCCAACCTACATTGCTCCCCAACTCGCCAAACAACTTCTAACTCCTCAAAAGAGAAGGTTTGCATTGTGCTTGCTTTTTGTAGAAGATGCAACTTTAGTTGCAAAGTTGAGAGAATTAACAATATTGAAAGTTATAAAGAAAAGAAAGCATATGGCTTGCAAATTTGAATTTTAATGATGAACATAAATTTGAATTGTGGTGAAATTTGGAGAACTTATTCTAAGATAAATCTCAGTTTTATGTATCTCGGGTTTATAATATGCAAAAATGTGGAAATAGAGGGGAATGACAATCATTGTATTCAAGTAGGCTTTGATGAAAAATGAAAGAGTGTTTCGAGTTTAATTTGTAAAAGAAATAATATCATTCGAGCTCAAAGGAATATTTTGTACTATTTTAAGACATGTTGGGCAGAGGTAAAAGAAACATTGAAAAAGATCACATGTTGGGCCAGACAACAAACCTATTGAAGTGTGGAAAAACCTAGGAGATAGAGGCATTGCAAAGCGTACCAAACTTTTCAACAAAATTATGAGATCAAAGCAAATGCGGGATGAGTGGAGGAGAAACACTTTAATTCCAATCTGTAACTCAAATCATGAAGTTATTGGAAAGAGTGATTGAACTGAGACCAAAAAAAGAGATGCAAGTTGCTGATAACCAATTTGATTTTATGCTTGCGAGGTCGACCATGGAAGCAATCTACTTACCACAACACGTGATGGAGCGGTATAAGATGGATAAAAAAGACTAGCACTTAGTTTTCATTGATTTGGAGAAGGCATATGAGAGTGGCTCGAAATATTTTGTGGAAAGCCCTAGAGAAGAAAAGCGTTACGATTGCCTATATTTTAGCTATTAGGAATATTAATTAGGGAGTCTCAACTTGTGTGAGGAGTGAGGACACATGATGGCGAAACCAATAATTTTCCCATAGCAATAGGATTAGCCCAAGGTTCAAACCCTAAGCCCTTATGTTTTTACTTTAGTTTTGGATTTACTTACGGACACATCCAAGTGCTATCACCGAGATGCATGGTTTTTGCAAACGATATAGTTCTACTTGAAGAGTTGAAGGAGGAATTAAATGGGAGGTTGGAGATGAGCCTTAGAAACGTATGGCCTTCGCCTGAGTAGAAAGCAAAACAAAGTATATTGAACGTGTCTTACTTTTACTCAAAAAAAAAGAAAAAAAAAGAAAGCCATACGCTTTTAAAACTTGTCTCGAAGTCTCTTACCTCATTTATTTATTCTCTTATCTCTCCAAGAAGTACTGAATCATCTTTAAGAATGTATGCATTAATGTGTTGGTTCCTGAACAGATTGGAACTTGATGTTAAATCCTTGTGAAATTGTTTATGTTGTGGAATCCTGTCGATGCGTGCTATTCATAGCCAGTCTCAAGCCCTAATTAAAGGAAAGGGTTTTGTTAGGCCTCAACAACAAACCAAAACAACTTCGAATCTTTATGACATTGATGGATCAACGATATTATCAAAATAATGTAAAACATTATATAGAGAGATGTCCTATGTTTGTTGGGGAACAAAATTGAGTTTTTGTGCTGTCTCTTATCCTTTTCTGTTATGTCCTCTCACCACTTTCAAATTGAACAATTAACAAAAAAATTTATGTTATCCTGTTCTTTAAGTTTTTGCAATTCAATGGATCCTACGAGATTACCTATCAGATTCCTCCTATGCTTTCAACTCATACAACACCTCAAATTGAAATATGGATTTGTTTCTTGATGTTCCCATTATCTTCTTCATACTTGCTCTCATTATCTAGCTCTTGATACCAAGTCTATTAGGATCTTCTTTTGCATCCATTCAATCAATTTATTTTTCAATAAAATGTCTGCATAACAGAGCATGTGAGTACGATGAACTAATCTATATTGCTTTTGTTGCTAATTGAGACAAGGTGCCGAAGTGACATACAAAGATCCCCAAAAATAGATAGAATCTAAAGGAGAGAATGGTGATGGTTGGAAAGCCGAAGAGAAGAGAATCATATAGATAGTGGCATTCTCTAGCTCACAACTTTCACATATTAATTTCCTAACTATACTAAATGTATGATTAGTCCTATTTATAAAACAAACTAAAATACCAGAAAGTCTACTGTCTATGCCTAGACTATTCTAACTAGCAACAGGAAGCACAACTAACAACCACTTTACATTCTTATACATTTTCCAGAGAAACATAGATCTAATAAATTTTGACTTTGCATATTGTATTTAGTAAATCGATTTACTTTTGTCAAGTTTCAATTGTTTAGTTGTTTTGATGCATGATGCTTTTATACATCAATTTTTAGTTTTCTTATGCATTTTTTTTTTTCCTTTTCTTTCACTTGATGACAGGATAGAAGCAAATGGTTTAAGCCAATGGTAAGTTTTCTTTTTAATTCTATTCTCTTTCAACATCTTTATTTGATAGACTCTTGTAGGATGTAAACTTGAAGTTGCTCTTTTTTATCTTTCCGGAAATCGGACAATGCAATTGCATGAAAATAAGTGAGACATAGCTGACTTATGTATGAATGATCTTTTTTACGTTTTCAGCCTTGGGAGGAAAGAATGAAAGATGCTTATGAGCAAGGGAAACTTGTGCTGCTTGAAAATTTGGATCCTTCTTTAACTTCATCAGAAGTACAGGTAATAATCATTCCAAAACCGGCATTTTCAGATTCTTGTAGGTTATGGGGAAAATTATAATAAATACAAAACTAACATTCTATAATACGACTGCATTACCAGCATGTTGAATCCTATGTAGACTCTAGAGTGGTTAATTTGTGGGGTAAATAGCCTCGTTTATCAGTACTCCTTGTTTTTCTTTGTAGTTGTGTTTTATTTGGAATAGAAGAGGCTTTATTTGCATTTGTACCATTTATTTTTGGGGTGATTAACTTTTAAGGCTGTGAGCATCTGTAATAGAGACGCAATATTCTAGCTGTTGCATGAATTCATTTCTTTTATGTAGAATGACTAGTCTATCCCTTAATGACAATTTCATCCACTTTGTTGTTATCTTACTAACCTTCCTGTCTCTAATATCTTTGACGTACTTTTCTAAATCACAGGATATTATTTTGGATGGCTTTAAAGAACGATGTACTGCAAAGCTGATCCAGAAGACCGCATATTCTAGTCCTCATTCTGGTTAGACACTGCAGTCTTTGCTCATTTTTTTTTTTTTTACAAGCTAGCTGAGATTGCATGCACTTTCCTATTCCTCTTCTTATCTGTGTTTCAATATTTTATTTATGATACAGGTCAAGCTTTTGCTATATTTAAAAGAAAGGAAGCAGCAGAATCTGTCATTAGAAAATTGGAGGAGGGCTGTTTCTTGATGTCAAATGGGCG

Protein sequence

>MS.gene40342.t1

MILNDRISFEVVYLIVAVKNIFNNLYSQKLGGLSKLGLDEKQVGVKVTGSNEAVALSSKKNNKHLIEKLDGKCFDTVDSKPSLGEKRTSSLGLKDTSKSNGGLHSISRDKTLPLSKEKENGVNKASLAKQKSSSKLSHSSSDGLEMVGISKIGGNVSIDKTVLKSKIDSEIGGRDIVGVSDRQINRRLGEGNTSEKDKYGTSSAKTTNNVKNGRDVDDGDVKEIPSKKLKIDTTSVKLSGDKLADRQINKRLEERKASFKEKYGVSSTKIANHMQNQRNHDDDVKEAPSKKLKIDTMQTKLSGGKLRKESSTTSPNLGHKQDYSVTDVTQRPDVDRSKWFKPMPWEERMKDAYEQGKLVLLENLDPSLTSSEVQDIILDGFKERCTAKLIQKTAYSSPHSGQAFAIFKRKEAAESVIRKLEEGCFLMSNG