Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40499.t1 | XP_003610789.2 | 92 | 874 | 52 | 2 | 1 | 856 | 1 | 874 | 0.00E+00 | 1581.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40499.t1 | G7K528 | 92.0 | 874 | 52 | 2 | 1 | 856 | 1 | 874 | 0.0e+00 | 1581.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene40499 | 0.846051 | 2.77E-59 | -1.69E-46 |
| MS.gene049369 | MS.gene40499 | 0.860415 | 2.10E-63 | -1.69E-46 |
| MS.gene049396 | MS.gene40499 | 0.810549 | 1.09E-50 | -1.69E-46 |
| MS.gene05316 | MS.gene40499 | 0.849546 | 3.02E-60 | -1.69E-46 |
| MS.gene053758 | MS.gene40499 | 0.802023 | 6.83E-49 | -1.69E-46 |
| MS.gene053813 | MS.gene40499 | 0.830394 | 3.01E-55 | -1.69E-46 |
| MS.gene054123 | MS.gene40499 | 0.818117 | 2.32E-52 | -1.69E-46 |
| MS.gene054486 | MS.gene40499 | 0.845506 | 3.89E-59 | -1.69E-46 |
| MS.gene055909 | MS.gene40499 | 0.825257 | 5.17E-54 | -1.69E-46 |
| MS.gene055911 | MS.gene40499 | 0.823711 | 1.20E-53 | -1.69E-46 |
| MS.gene056422 | MS.gene40499 | 0.820863 | 5.48E-53 | -1.69E-46 |
| MS.gene056511 | MS.gene40499 | 0.811084 | 8.36E-51 | -1.69E-46 |
| MS.gene057537 | MS.gene40499 | 0.820856 | 5.50E-53 | -1.69E-46 |
| MS.gene057609 | MS.gene40499 | 0.806521 | 7.90E-50 | -1.69E-46 |
| MS.gene057610 | MS.gene40499 | 0.84858 | 5.60E-60 | -1.69E-46 |
| MS.gene058072 | MS.gene40499 | 0.892584 | 1.39E-74 | -1.69E-46 |
| MS.gene058075 | MS.gene40499 | 0.94649 | 4.18E-105 | -1.69E-46 |
| MS.gene058459 | MS.gene40499 | 0.808504 | 3.00E-50 | -1.69E-46 |
| MS.gene05858 | MS.gene40499 | 0.811718 | 6.09E-51 | -1.69E-46 |
| MS.gene058928 | MS.gene40499 | 0.802866 | 4.58E-49 | -1.69E-46 |
| MS.gene058949 | MS.gene40499 | 0.808485 | 3.03E-50 | -1.69E-46 |
| MS.gene059674 | MS.gene40499 | 0.846978 | 1.55E-59 | -1.69E-46 |
| MS.gene059711 | MS.gene40499 | 0.831092 | 2.03E-55 | -1.69E-46 |
| MS.gene059807 | MS.gene40499 | 0.898846 | 3.55E-77 | -1.69E-46 |
| MS.gene059876 | MS.gene40499 | 0.806172 | 9.36E-50 | -1.69E-46 |
| MS.gene060372 | MS.gene40499 | 0.803582 | 3.25E-49 | -1.69E-46 |
| MS.gene060495 | MS.gene40499 | 0.849826 | 2.52E-60 | -1.69E-46 |
| MS.gene060837 | MS.gene40499 | 0.805993 | 1.02E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40499.t1 | MTR_5g007040 | 91.991 | 874 | 52 | 2 | 1 | 856 | 1 | 874 | 0.0 | 1642 |
| MS.gene40499.t1 | MTR_6g046940 | 81.903 | 746 | 59 | 6 | 1 | 743 | 1 | 673 | 0.0 | 1198 |
| MS.gene40499.t1 | MTR_1g075280 | 35.315 | 286 | 141 | 9 | 91 | 362 | 168 | 423 | 8.09e-29 | 122 |
| MS.gene40499.t1 | MTR_1g075280 | 35.315 | 286 | 141 | 9 | 91 | 362 | 207 | 462 | 1.29e-28 | 122 |
| MS.gene40499.t1 | MTR_1g075280 | 58.750 | 80 | 30 | 1 | 9 | 85 | 1 | 80 | 3.13e-20 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40499.t1 | AT5G43630 | 30.551 | 671 | 347 | 24 | 31 | 619 | 25 | 658 | 3.75e-57 | 211 |
| MS.gene40499.t1 | AT5G43630 | 45.813 | 203 | 95 | 5 | 668 | 856 | 630 | 831 | 4.64e-42 | 166 |
| MS.gene40499.t1 | AT5G43630 | 30.551 | 671 | 347 | 24 | 31 | 619 | 25 | 658 | 3.75e-57 | 211 |
| MS.gene40499.t1 | AT5G43630 | 45.813 | 203 | 95 | 5 | 668 | 856 | 630 | 831 | 4.64e-42 | 166 |
| MS.gene40499.t1 | AT5G43630 | 30.551 | 671 | 347 | 24 | 31 | 619 | 25 | 658 | 3.75e-57 | 211 |
| MS.gene40499.t1 | AT5G43630 | 45.813 | 203 | 95 | 5 | 668 | 856 | 630 | 831 | 4.64e-42 | 166 |
| MS.gene40499.t1 | AT5G43630 | 30.551 | 671 | 347 | 24 | 31 | 619 | 25 | 658 | 3.75e-57 | 211 |
| MS.gene40499.t1 | AT5G43630 | 45.813 | 203 | 95 | 5 | 668 | 856 | 630 | 831 | 4.64e-42 | 166 |
Find 148 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCAAAACCACTGGATTT+TGG | 0.157505 | 5.3:-2009817 | None:intergenic |
| GACTCCCTGGATTGTCTTTC+CGG | 0.170908 | 5.3:-2009774 | None:intergenic |
| ATCTCTGGAAAACAGGTTAT+TGG | 0.246005 | 5.3:-2009463 | None:intergenic |
| AAATTTAAAGGTTCAATATT+AGG | 0.247779 | 5.3:-2009565 | None:intergenic |
| GAGCCTTTGTATTCAGTTAC+AGG | 0.247973 | 5.3:-2008725 | None:intergenic |
| TTCTTGTTTAATGTAGGATT+TGG | 0.271583 | 5.3:-2009134 | None:intergenic |
| AGATGAACCTAAACCTATTA+TGG | 0.280334 | 5.3:+2008634 | MS.gene40499:CDS |
| AACCATGCATTATGAAGATT+TGG | 0.280576 | 5.3:-2009250 | None:intergenic |
| TGAACATATACTTCAACTTT+TGG | 0.308816 | 5.3:-2009858 | None:intergenic |
| ATCATAATTTATGCCTTCAT+TGG | 0.310698 | 5.3:-2008684 | None:intergenic |
| TTAGTTTGGTCTTCAGATAA+AGG | 0.312924 | 5.3:+2008339 | MS.gene40499:CDS |
| AAACATTTAATGCACATAAA+AGG | 0.319178 | 5.3:-2010129 | None:intergenic |
| AAGAGTTCACTATCAGTCTT+TGG | 0.323107 | 5.3:-2008210 | None:intergenic |
| TGCGCCTGCGGCTTGGGAAG+TGG | 0.328935 | 5.3:+2010748 | MS.gene40499:CDS |
| AAGTGAGCTAGAAGATCTTC+AGG | 0.335373 | 5.3:+2010071 | MS.gene40499:CDS |
| TTTACTTGTGAGGTACATTC+TGG | 0.345896 | 5.3:-2009985 | None:intergenic |
| ATCCTCTTTCCGAATTAGTT+TGG | 0.351970 | 5.3:+2008325 | MS.gene40499:CDS |
| TCATTGGGAGGCCTCCTTGA+TGG | 0.355832 | 5.3:-2008668 | None:intergenic |
| CTTGGCGTTTATAACGTCAT+TGG | 0.358095 | 5.3:-2010349 | None:intergenic |
| CCATGTACAGTGTTATTACT+TGG | 0.358661 | 5.3:-2009427 | None:intergenic |
| AAGAAAGCTCATTCAGAAAC+TGG | 0.360229 | 5.3:+2009152 | MS.gene40499:CDS |
| ATTGAAAATGCCGTTTGTTA+AGG | 0.362224 | 5.3:-2009492 | None:intergenic |
| AACATTTCTTAAATCATTCT+CGG | 0.363507 | 5.3:-2008813 | None:intergenic |
| ATCTGAAGACCAAACTAATT+CGG | 0.365396 | 5.3:-2008334 | None:intergenic |
| TACCTCAAGAAAATCTTGAT+TGG | 0.368233 | 5.3:-2011038 | None:intergenic |
| GAAGGCATAAATTATGATAC+TGG | 0.375310 | 5.3:+2008689 | MS.gene40499:CDS |
| CCGGTCTTGCAGTCCCTTCA+TGG | 0.379731 | 5.3:-2010230 | None:intergenic |
| TTCAAACTTGTGCCTTAGTA+AGG | 0.384377 | 5.3:+2009639 | MS.gene40499:CDS |
| AAGACAATCCAGGGAGTCTA+TGG | 0.386401 | 5.3:+2009779 | MS.gene40499:CDS |
| CGGCTTGGGAAGTGGGAAGA+AGG | 0.393299 | 5.3:+2010756 | MS.gene40499:CDS |
| ATCGACAATGAAGAAACTTC+TGG | 0.405788 | 5.3:+2009109 | MS.gene40499:CDS |
| TATCCAAGTTTGAAGAATAT+AGG | 0.406340 | 5.3:+2009358 | MS.gene40499:CDS |
| GCAATTGATCTCTGGAAAAC+AGG | 0.406472 | 5.3:-2009470 | None:intergenic |
| TCTCAACAGCAGTTGATGAT+TGG | 0.410588 | 5.3:+2009070 | MS.gene40499:CDS |
| ATTCTCTGCTTTCTTTCTCT+CGG | 0.414942 | 5.3:-2009743 | None:intergenic |
| ATTTGCATCCCCATCTGATA+AGG | 0.416235 | 5.3:-2008957 | None:intergenic |
| GCGCCTGCGGCTTGGGAAGT+GGG | 0.434123 | 5.3:+2010749 | MS.gene40499:CDS |
| TATAACATCTCCGTCGAGAT+TGG | 0.435268 | 5.3:+2010446 | MS.gene40499:CDS |
| ACGTTTGCAAAGAGATTTGT+TGG | 0.435552 | 5.3:+2009934 | MS.gene40499:CDS |
| CTCAACAGCAGTTGATGATT+GGG | 0.436500 | 5.3:+2009071 | MS.gene40499:CDS |
| TTGTTAAGGCAATTGATCTC+TGG | 0.437536 | 5.3:-2009478 | None:intergenic |
| CTTTCTCTCGGATGGTGCGT+TGG | 0.438518 | 5.3:-2009731 | None:intergenic |
| TAGTAAGGACAAGGAAGAAA+TGG | 0.439540 | 5.3:+2009654 | MS.gene40499:CDS |
| TCTGCTTTCTTTCTCTCGGA+TGG | 0.440615 | 5.3:-2009739 | None:intergenic |
| CTCGACGGAGATGTTATACT+AGG | 0.443437 | 5.3:-2010441 | None:intergenic |
| GAAGAAGGGCTTGGAGGAAC+TGG | 0.447576 | 5.3:+2010771 | MS.gene40499:CDS |
| TACAAAGGCTCTGGTGCTGC+AGG | 0.449475 | 5.3:+2008737 | MS.gene40499:CDS |
| CTCATCTTCCTCAAAACCAC+TGG | 0.450177 | 5.3:-2009824 | None:intergenic |
| AACGACACTACCTTGCGTTA+AGG | 0.450935 | 5.3:+2008865 | MS.gene40499:CDS |
| AATCTCTCTCAGTGAAAGTA+GGG | 0.456729 | 5.3:+2010981 | MS.gene40499:CDS |
| TGTAAATTCATATGAAGGTC+CGG | 0.457030 | 5.3:+2010098 | MS.gene40499:CDS |
| TGATGCATTGCATTCTATCT+TGG | 0.457149 | 5.3:-2010367 | None:intergenic |
| TCATAATTTATGCCTTCATT+GGG | 0.458322 | 5.3:-2008683 | None:intergenic |
| GTTCCTATATTCTTCAAACT+TGG | 0.462575 | 5.3:-2009361 | None:intergenic |
| TTACATGGAGAATGCAAAAC+AGG | 0.463584 | 5.3:-2008893 | None:intergenic |
| TGAGCTTTCTTGTTTAATGT+AGG | 0.464135 | 5.3:-2009140 | None:intergenic |
| AAATCTCTCTCAGTGAAAGT+AGG | 0.468291 | 5.3:+2010980 | MS.gene40499:CDS |
| TTTCTTCCTTGTCCTTACTA+AGG | 0.468637 | 5.3:-2009651 | None:intergenic |
| CTTCCCACTTCCCAAGCCGC+AGG | 0.470117 | 5.3:-2010752 | None:intergenic |
| TTTATCAGCAAAGCTTGAAT+CGG | 0.474036 | 5.3:-2008379 | None:intergenic |
| TGATGCTGAAAACAAATATG+AGG | 0.475122 | 5.3:+2008835 | MS.gene40499:CDS |
| ATTCACAAACTCGGAGCAAA+TGG | 0.479748 | 5.3:+2009906 | MS.gene40499:CDS |
| GGGAAGTGGGAAGAAGGGCT+TGG | 0.479926 | 5.3:+2010762 | MS.gene40499:CDS |
| CTTCAAACTTGGATAATACA+TGG | 0.480740 | 5.3:-2009350 | None:intergenic |
| CCAAGTAATAACACTGTACA+TGG | 0.482380 | 5.3:+2009427 | MS.gene40499:CDS |
| GATATCAGATCTTCTTCAGA+TGG | 0.485772 | 5.3:-2011510 | None:intergenic |
| CGAGTTATCCATAGACTCCC+TGG | 0.491615 | 5.3:-2009787 | None:intergenic |
| TCAAGGAGGCCTCCCAATGA+AGG | 0.494185 | 5.3:+2008671 | MS.gene40499:CDS |
| TTGAAAGCTGTAACAGTGCT+AGG | 0.495098 | 5.3:+2009017 | MS.gene40499:CDS |
| TGAATTGCTGTCATTATCCA+TGG | 0.498749 | 5.3:-2008990 | None:intergenic |
| GTACATTCTGGTTTGTCTGT+CGG | 0.500733 | 5.3:-2009973 | None:intergenic |
| CCATGAAGGGACTGCAAGAC+CGG | 0.501023 | 5.3:+2010230 | MS.gene40499:CDS |
| TATGAAGATTTGGATTTGCA+AGG | 0.503391 | 5.3:-2009240 | None:intergenic |
| GAAAATGTAAATTCATATGA+AGG | 0.504472 | 5.3:+2010093 | MS.gene40499:CDS |
| ATCCAAATCTTCATAATGCA+TGG | 0.507310 | 5.3:+2009248 | MS.gene40499:CDS |
| TTACTTCAGGATGTCGGTGC+GGG | 0.508749 | 5.3:-2010532 | None:intergenic |
| GTCAAAACCTTTGTCCATGA+AGG | 0.509754 | 5.3:+2010216 | MS.gene40499:CDS |
| TCTGCCTTGTCAATCTGCAC+CGG | 0.520768 | 5.3:-2010249 | None:intergenic |
| GGATTTCAAGCATGGTGAAA+GGG | 0.521068 | 5.3:+2009173 | MS.gene40499:CDS |
| GTAACTGAATACAAAGGCTC+TGG | 0.523768 | 5.3:+2008728 | MS.gene40499:CDS |
| GGCTTGGGAAGTGGGAAGAA+GGG | 0.526914 | 5.3:+2010757 | MS.gene40499:CDS |
| CTCAACACCTGCTTCTGAGT+TGG | 0.528426 | 5.3:-2011484 | None:intergenic |
| CTGTCGGCATGATATGTTTG+AGG | 0.529117 | 5.3:-2009957 | None:intergenic |
| TGCAAATGTAAGATTATCCA+TGG | 0.529365 | 5.3:+2008973 | MS.gene40499:CDS |
| GACCAAACTAATTCGGAAAG+AGG | 0.530007 | 5.3:-2008327 | None:intergenic |
| TTCTATAGGATTCCTGCTGG+AGG | 0.530141 | 5.3:-2008774 | None:intergenic |
| CTGCAGATCAGGTTGATCAA+AGG | 0.530764 | 5.3:+2008585 | MS.gene40499:intron |
| TGCAGTCCCTTCATGGACAA+AGG | 0.530820 | 5.3:-2010223 | None:intergenic |
| CAGAAACTGGATTTCAAGCA+TGG | 0.531557 | 5.3:+2009165 | MS.gene40499:CDS |
| AGCAGATGGGTAACTGCTCA+TGG | 0.531563 | 5.3:+2010696 | MS.gene40499:intron |
| ATAACGCTGACCAGTGCGAT+TGG | 0.531960 | 5.3:+2008238 | MS.gene40499:CDS |
| ACAAGAATGTTTCATCAAGA+AGG | 0.536595 | 5.3:+2009382 | MS.gene40499:CDS |
| AGATCAATTGCCTTAACAAA+CGG | 0.537737 | 5.3:+2009482 | MS.gene40499:CDS |
| AAGGAAAAGTCCTTATCAGA+TGG | 0.541772 | 5.3:+2008947 | MS.gene40499:CDS |
| TGGATTTCAAGCATGGTGAA+AGG | 0.544832 | 5.3:+2009172 | MS.gene40499:CDS |
| AAGTGGGAAGAAGGGCTTGG+AGG | 0.545767 | 5.3:+2010765 | MS.gene40499:CDS |
| CTAATTTAACATCCTCCAGC+AGG | 0.545874 | 5.3:+2008762 | MS.gene40499:CDS |
| CATTACTTACTTCAGGATGT+CGG | 0.547841 | 5.3:-2010538 | None:intergenic |
| TAGTACCGCCAGATAAAATC+CGG | 0.549876 | 5.3:-2010272 | None:intergenic |
| ATCAGAATATTAATTTAAAG+CGG | 0.551454 | 5.3:+2010322 | MS.gene40499:CDS |
| ACAAAACATGTTTACTTGTG+AGG | 0.552330 | 5.3:-2009995 | None:intergenic |
| TGGAGCAAAATTCTCCATCA+AGG | 0.553513 | 5.3:+2008654 | MS.gene40499:CDS |
| AGTCACCGGAAAGACAATCC+AGG | 0.553846 | 5.3:+2009769 | MS.gene40499:CDS |
| GTGGCTTGTATAACTATAAG+TGG | 0.554774 | 5.3:+2010801 | MS.gene40499:CDS |
| AGGAAAAGTCCTTATCAGAT+GGG | 0.555535 | 5.3:+2008948 | MS.gene40499:CDS |
| TGCAGATTGACAAGGCAGAC+CGG | 0.555594 | 5.3:+2010253 | MS.gene40499:CDS |
| TAATTTATGCCTTCATTGGG+AGG | 0.557620 | 5.3:-2008680 | None:intergenic |
| CAGCTGAGCAATCACTGAGT+TGG | 0.558671 | 5.3:-2010041 | None:intergenic |
| TGGATCATTCTCGCAACTCG+AGG | 0.560436 | 5.3:+2010716 | MS.gene40499:CDS |
| TGGTCTGCCAACTCAGAAGC+AGG | 0.561703 | 5.3:+2011477 | MS.gene40499:CDS |
| TCTGGCGGTACTATCCATGA+TGG | 0.562268 | 5.3:+2010282 | MS.gene40499:CDS |
| TGAAGTGATAAATCATCAGT+TGG | 0.564889 | 5.3:-2008608 | None:intergenic |
| CGATTTGCTCCAAAATCCAG+TGG | 0.570951 | 5.3:+2009808 | MS.gene40499:CDS |
| ATATTGTGGTTCTAGTTCAA+AGG | 0.571071 | 5.3:+2010398 | MS.gene40499:CDS |
| AAGCAGAGAATATCAGTCAC+CGG | 0.581238 | 5.3:+2009755 | MS.gene40499:CDS |
| TTACATTGATTATAGCAGCT+AGG | 0.585790 | 5.3:-2008429 | None:intergenic |
| GCATCATGCAAGAAATATTG+TGG | 0.587668 | 5.3:+2010384 | MS.gene40499:CDS |
| CTTGTGCCTTAGTAAGGACA+AGG | 0.597028 | 5.3:+2009645 | MS.gene40499:CDS |
| TCAAAACCTTTGTCCATGAA+GGG | 0.597057 | 5.3:+2010217 | MS.gene40499:CDS |
| GGATCATTCTCGCAACTCGA+GGG | 0.597301 | 5.3:+2010717 | MS.gene40499:CDS |
| GGTTCAATATTAGGCTGTGA+CGG | 0.600004 | 5.3:-2009556 | None:intergenic |
| GTTATGCCGCTTCTTACCTG+TGG | 0.607094 | 5.3:-2009047 | None:intergenic |
| TACAGGAAGAAATCATGGAA+TGG | 0.611613 | 5.3:+2011454 | MS.gene40499:intron |
| ATGTTTCATCAAGAAGGAGA+AGG | 0.623506 | 5.3:+2009388 | MS.gene40499:CDS |
| ACAGGAAGAACCTTAACGCA+AGG | 0.624154 | 5.3:-2008875 | None:intergenic |
| GAAGATTTCACATGTGCCAG+AGG | 0.625270 | 5.3:+2010476 | MS.gene40499:CDS |
| AGGAAGAAATCATGGAATGG+TGG | 0.625917 | 5.3:+2011457 | MS.gene40499:intron |
| TAATTCGGAAAGAGGATCAG+TGG | 0.635047 | 5.3:-2008319 | None:intergenic |
| GATGCTGAAAACAAATATGA+GGG | 0.635203 | 5.3:+2008836 | MS.gene40499:CDS |
| GTCACCGGAAAGACAATCCA+GGG | 0.636256 | 5.3:+2009770 | MS.gene40499:CDS |
| ATCTCTCTCAGTGAAAGTAG+GGG | 0.638733 | 5.3:+2010982 | MS.gene40499:CDS |
| ATCCTCGCGAAGATGATGAA+AGG | 0.640734 | 5.3:-2009885 | None:intergenic |
| TTTGTCCTTCTGAAGATGAG+TGG | 0.640790 | 5.3:+2008165 | None:intergenic |
| GACCTTTCATCATCTTCGCG+AGG | 0.641559 | 5.3:+2009883 | MS.gene40499:CDS |
| AAGATTTCACATGTGCCAGA+GGG | 0.642256 | 5.3:+2010477 | MS.gene40499:CDS |
| TTCGCGAGGATTCACAAACT+CGG | 0.642339 | 5.3:+2009897 | MS.gene40499:CDS |
| TCTCTCTCAGTGAAAGTAGG+GGG | 0.646665 | 5.3:+2010983 | MS.gene40499:CDS |
| ATGTAACAGCAAAATCCGCA+TGG | 0.652139 | 5.3:+2008910 | MS.gene40499:CDS |
| TGGAGGAACTGGTTACCATG+TGG | 0.653299 | 5.3:+2010782 | MS.gene40499:CDS |
| GGAAAAGTCCTTATCAGATG+GGG | 0.656916 | 5.3:+2008949 | MS.gene40499:CDS |
| CTTACTTCAGGATGTCGGTG+CGG | 0.670580 | 5.3:-2010533 | None:intergenic |
| AAGACCGGTGCAGATTGACA+AGG | 0.674989 | 5.3:+2010245 | MS.gene40499:CDS |
| TCAAGAAGGAGAAGGTGACG+AGG | 0.679529 | 5.3:+2009396 | MS.gene40499:CDS |
| GAGCCTGTAACTGAATACAA+AGG | 0.702420 | 5.3:+2008722 | MS.gene40499:CDS |
| GCTTCAGAGAGATATGACGC+TGG | 0.707407 | 5.3:+2009532 | MS.gene40499:CDS |
| AGCAAAATTCTCCATCAAGG+AGG | 0.713594 | 5.3:+2008657 | MS.gene40499:CDS |
| TTATAGTTATACAAGCCACA+TGG | 0.755776 | 5.3:-2010797 | None:intergenic |
| TGGAACATGAAACTGCCCAG+TGG | 0.805275 | 5.3:-2010161 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTAAAGGTTCAATATT+AGG | - | chr5.3:2009568-2009587 | None:intergenic | 15.0% |
| !! | AATCATCAATGATTATTTAT+TGG | + | chr5.3:2011067-2011086 | MS.gene40499:intron | 15.0% |
| !! | ATCAGAATATTAATTTAAAG+CGG | + | chr5.3:2010322-2010341 | MS.gene40499:CDS | 15.0% |
| !!! | TTTTAAACTTTTTCTTATTC+TGG | + | chr5.3:2010912-2010931 | MS.gene40499:intron | 15.0% |
| !! | AAACATTTAATGCACATAAA+AGG | - | chr5.3:2010132-2010151 | None:intergenic | 20.0% |
| !! | AACATTTCTTAAATCATTCT+CGG | - | chr5.3:2008816-2008835 | None:intergenic | 20.0% |
| !! | AATCAATGTAAGAAACATAT+AGG | + | chr5.3:2008441-2008460 | MS.gene40499:intron | 20.0% |
| !! | CTTTATAATACAAAATGTCA+CGG | - | chr5.3:2010582-2010601 | None:intergenic | 20.0% |
| !! | GAAAATGTAAATTCATATGA+AGG | + | chr5.3:2010093-2010112 | MS.gene40499:CDS | 20.0% |
| !! | TGGCTGTTATAAAAATTTAA+AGG | - | chr5.3:2009580-2009599 | None:intergenic | 20.0% |
| !!! | TCTAATAAATTTTATGGAGT+GGG | + | chr5.3:2011279-2011298 | MS.gene40499:intron | 20.0% |
| !!! | TTATTACAATCAACATGTTT+TGG | + | chr5.3:2011396-2011415 | MS.gene40499:intron | 20.0% |
| !!! | TTCAGCTCTAATAAATTTTA+TGG | + | chr5.3:2011273-2011292 | MS.gene40499:intron | 20.0% |
| !!! | TTTAAATTTTTATAACAGCC+AGG | + | chr5.3:2009579-2009598 | MS.gene40499:CDS | 20.0% |
| !!! | TTTTATTTTTGAGATTGAAC+TGG | - | chr5.3:2010184-2010203 | None:intergenic | 20.0% |
| ! | ATCATAATTTATGCCTTCAT+TGG | - | chr5.3:2008687-2008706 | None:intergenic | 25.0% |
| ! | CTCAAAAATAAAACCTGAAT+CGG | + | chr5.3:2010191-2010210 | MS.gene40499:CDS | 25.0% |
| ! | GATATAGCTTCAATAACAAT+AGG | - | chr5.3:2011212-2011231 | None:intergenic | 25.0% |
| ! | TATATCGTTTCAATGTCATT+TGG | + | chr5.3:2011226-2011245 | MS.gene40499:intron | 25.0% |
| ! | TATCCAAAAAAAAATGAACC+AGG | - | chr5.3:2010869-2010888 | None:intergenic | 25.0% |
| ! | TATCCAAGTTTGAAGAATAT+AGG | + | chr5.3:2009358-2009377 | MS.gene40499:CDS | 25.0% |
| ! | TCATAATTTATGCCTTCATT+GGG | - | chr5.3:2008686-2008705 | None:intergenic | 25.0% |
| ! | TCTATTGCTCAATTACATTA+AGG | + | chr5.3:2010611-2010630 | MS.gene40499:intron | 25.0% |
| ! | TTCAAAAAGAAACAAATGCT+AGG | + | chr5.3:2011537-2011556 | MS.gene40499:CDS | 25.0% |
| !! | ATAATACATGGACTGAAAAA+TGG | - | chr5.3:2009341-2009360 | None:intergenic | 25.0% |
| !! | CACATAAAAGGAAAATTTTC+CGG | - | chr5.3:2010120-2010139 | None:intergenic | 25.0% |
| !! | CTCTAATAAATTTTATGGAG+TGG | + | chr5.3:2011278-2011297 | MS.gene40499:intron | 25.0% |
| !! | GATTTGAATCCTGTATTTTT+CGG | - | chr5.3:2009319-2009338 | None:intergenic | 25.0% |
| !! | TGAACATATACTTCAACTTT+TGG | - | chr5.3:2009861-2009880 | None:intergenic | 25.0% |
| !! | TTCTTGTTTAATGTAGGATT+TGG | - | chr5.3:2009137-2009156 | None:intergenic | 25.0% |
| !!! | AACATGTTTTGTTTGTTTTG+TGG | + | chr5.3:2010006-2010025 | MS.gene40499:CDS | 25.0% |
| !!! | ATACCTGGTTCATTTTTTTT+TGG | + | chr5.3:2010863-2010882 | MS.gene40499:intron | 25.0% |
| AACCATGCATTATGAAGATT+TGG | - | chr5.3:2009253-2009272 | None:intergenic | 30.0% | |
| ACAAAACATGTTTACTTGTG+AGG | - | chr5.3:2009998-2010017 | None:intergenic | 30.0% | |
| ACAAGAATGTTTCATCAAGA+AGG | + | chr5.3:2009382-2009401 | MS.gene40499:CDS | 30.0% | |
| AGATCAATTGCCTTAACAAA+CGG | + | chr5.3:2009482-2009501 | MS.gene40499:CDS | 30.0% | |
| AGATGAACCTAAACCTATTA+TGG | + | chr5.3:2008634-2008653 | MS.gene40499:CDS | 30.0% | |
| ATCCAAATCTTCATAATGCA+TGG | + | chr5.3:2009248-2009267 | MS.gene40499:CDS | 30.0% | |
| ATCTGAAGACCAAACTAATT+CGG | - | chr5.3:2008337-2008356 | None:intergenic | 30.0% | |
| ATGATTTCTTCCTGTACAAA+AGG | - | chr5.3:2011450-2011469 | None:intergenic | 30.0% | |
| CTGAATTTCACATGAGTTTA+TGG | - | chr5.3:2011258-2011277 | None:intergenic | 30.0% | |
| CTTCAAACTTGGATAATACA+TGG | - | chr5.3:2009353-2009372 | None:intergenic | 30.0% | |
| GATGCTGAAAACAAATATGA+GGG | + | chr5.3:2008836-2008855 | MS.gene40499:CDS | 30.0% | |
| GTTCCTATATTCTTCAAACT+TGG | - | chr5.3:2009364-2009383 | None:intergenic | 30.0% | |
| TACCTCAAGAAAATCTTGAT+TGG | - | chr5.3:2011041-2011060 | None:intergenic | 30.0% | |
| TATGAAGATTTGGATTTGCA+AGG | - | chr5.3:2009243-2009262 | None:intergenic | 30.0% | |
| TGAAGTGATAAATCATCAGT+TGG | - | chr5.3:2008611-2008630 | None:intergenic | 30.0% | |
| TGATGCTGAAAACAAATATG+AGG | + | chr5.3:2008835-2008854 | MS.gene40499:CDS | 30.0% | |
| TGATTTCTTCCTGTACAAAA+GGG | - | chr5.3:2011449-2011468 | None:intergenic | 30.0% | |
| TGCAAATGTAAGATTATCCA+TGG | + | chr5.3:2008973-2008992 | MS.gene40499:CDS | 30.0% | |
| TGTAAATTCATATGAAGGTC+CGG | + | chr5.3:2010098-2010117 | MS.gene40499:CDS | 30.0% | |
| TTATAGTTATACAAGCCACA+TGG | - | chr5.3:2010800-2010819 | None:intergenic | 30.0% | |
| TTTATCAGCAAAGCTTGAAT+CGG | - | chr5.3:2008382-2008401 | None:intergenic | 30.0% | |
| ! | AACAATTTTCATTCTCTGCT+GGG | - | chr5.3:2009621-2009640 | None:intergenic | 30.0% |
| ! | ATCCAATCAAGATTTTCTTG+AGG | + | chr5.3:2011036-2011055 | MS.gene40499:CDS | 30.0% |
| ! | ATTGAAAATGCCGTTTGTTA+AGG | - | chr5.3:2009495-2009514 | None:intergenic | 30.0% |
| ! | CTAGATTCCAGTTTTTCTAT+AGG | - | chr5.3:2008791-2008810 | None:intergenic | 30.0% |
| ! | GAAGGCATAAATTATGATAC+TGG | + | chr5.3:2008689-2008708 | MS.gene40499:CDS | 30.0% |
| ! | GGTTAATTTTGCTTATTTCC+TGG | - | chr5.3:2009600-2009619 | None:intergenic | 30.0% |
| ! | TATTCTGATCTGTTTTGTGA+TGG | - | chr5.3:2010311-2010330 | None:intergenic | 30.0% |
| ! | TGAGCTTTCTTGTTTAATGT+AGG | - | chr5.3:2009143-2009162 | None:intergenic | 30.0% |
| ! | TTACATTGATTATAGCAGCT+AGG | - | chr5.3:2008432-2008451 | None:intergenic | 30.0% |
| ! | TTAGTTTGGTCTTCAGATAA+AGG | + | chr5.3:2008339-2008358 | MS.gene40499:CDS | 30.0% |
| ! | TTTTGCTCCATAATAGGTTT+AGG | - | chr5.3:2008644-2008663 | None:intergenic | 30.0% |
| ! | TTTTGTACAGGAAGAAATCA+TGG | + | chr5.3:2011449-2011468 | MS.gene40499:intron | 30.0% |
| !! | ATATTGTGGTTCTAGTTCAA+AGG | + | chr5.3:2010398-2010417 | MS.gene40499:CDS | 30.0% |
| !!! | TGTTTGTTTTGTGGAAAAAG+AGG | + | chr5.3:2010015-2010034 | MS.gene40499:CDS | 30.0% |
| AAATCTCTCTCAGTGAAAGT+AGG | + | chr5.3:2010980-2010999 | MS.gene40499:CDS | 35.0% | |
| AAGAAAGCTCATTCAGAAAC+TGG | + | chr5.3:2009152-2009171 | MS.gene40499:CDS | 35.0% | |
| AAGAGTTCACTATCAGTCTT+TGG | - | chr5.3:2008213-2008232 | None:intergenic | 35.0% | |
| AAGGAAAAGTCCTTATCAGA+TGG | + | chr5.3:2008947-2008966 | MS.gene40499:CDS | 35.0% | |
| AATCTCTCTCAGTGAAAGTA+GGG | + | chr5.3:2010981-2011000 | MS.gene40499:CDS | 35.0% | |
| ACGTTTGCAAAGAGATTTGT+TGG | + | chr5.3:2009934-2009953 | MS.gene40499:CDS | 35.0% | |
| AGGAAAAGTCCTTATCAGAT+GGG | + | chr5.3:2008948-2008967 | MS.gene40499:CDS | 35.0% | |
| AGGTATGATTCTACATTCCA+AGG | - | chr5.3:2010849-2010868 | None:intergenic | 35.0% | |
| ATCCTCTTTCCGAATTAGTT+TGG | + | chr5.3:2008325-2008344 | MS.gene40499:CDS | 35.0% | |
| ATCGACAATGAAGAAACTTC+TGG | + | chr5.3:2009109-2009128 | MS.gene40499:CDS | 35.0% | |
| ATGTCACGGTATAAGTTAGT+AGG | - | chr5.3:2010568-2010587 | None:intergenic | 35.0% | |
| ATGTTTCATCAAGAAGGAGA+AGG | + | chr5.3:2009388-2009407 | MS.gene40499:CDS | 35.0% | |
| ATTCTCTGCTTTCTTTCTCT+CGG | - | chr5.3:2009746-2009765 | None:intergenic | 35.0% | |
| CAGAACGAGGAATACTATTA+AGG | - | chr5.3:2008559-2008578 | None:intergenic | 35.0% | |
| CAGGAATCCTATAGAAAAAC+TGG | + | chr5.3:2008781-2008800 | MS.gene40499:CDS | 35.0% | |
| CATTACTTACTTCAGGATGT+CGG | - | chr5.3:2010541-2010560 | None:intergenic | 35.0% | |
| CCAAGTAATAACACTGTACA+TGG | + | chr5.3:2009427-2009446 | MS.gene40499:CDS | 35.0% | |
| GATATCAGATCTTCTTCAGA+TGG | - | chr5.3:2011513-2011532 | None:intergenic | 35.0% | |
| GATTTCTTCCTGTACAAAAG+GGG | - | chr5.3:2011448-2011467 | None:intergenic | 35.0% | |
| GCATCATGCAAGAAATATTG+TGG | + | chr5.3:2010384-2010403 | MS.gene40499:CDS | 35.0% | |
| GGTATGATTCTACATTCCAA+GGG | - | chr5.3:2010848-2010867 | None:intergenic | 35.0% | |
| TAATTTATGCCTTCATTGGG+AGG | - | chr5.3:2008683-2008702 | None:intergenic | 35.0% | |
| TACAGGAAGAAATCATGGAA+TGG | + | chr5.3:2011454-2011473 | MS.gene40499:intron | 35.0% | |
| TAGTAAGGACAAGGAAGAAA+TGG | + | chr5.3:2009654-2009673 | MS.gene40499:CDS | 35.0% | |
| TCAAAACCTTTGTCCATGAA+GGG | + | chr5.3:2010217-2010236 | MS.gene40499:CDS | 35.0% | |
| TGAATTGCTGTCATTATCCA+TGG | - | chr5.3:2008993-2009012 | None:intergenic | 35.0% | |
| TGATGCATTGCATTCTATCT+TGG | - | chr5.3:2010370-2010389 | None:intergenic | 35.0% | |
| TTAAAATCACACTTTGCCCT+TGG | + | chr5.3:2010829-2010848 | MS.gene40499:intron | 35.0% | |
| TTACATGGAGAATGCAAAAC+AGG | - | chr5.3:2008896-2008915 | None:intergenic | 35.0% | |
| TTCAAACTTGTGCCTTAGTA+AGG | + | chr5.3:2009639-2009658 | MS.gene40499:CDS | 35.0% | |
| TTGGAATGTAGAATCATACC+TGG | + | chr5.3:2010848-2010867 | MS.gene40499:intron | 35.0% | |
| TTGTTAAGGCAATTGATCTC+TGG | - | chr5.3:2009481-2009500 | None:intergenic | 35.0% | |
| TTTACTTGTGAGGTACATTC+TGG | - | chr5.3:2009988-2010007 | None:intergenic | 35.0% | |
| TTTCTTCCTTGTCCTTACTA+AGG | - | chr5.3:2009654-2009673 | None:intergenic | 35.0% | |
| ! | ATCTCTGGAAAACAGGTTAT+TGG | - | chr5.3:2009466-2009485 | None:intergenic | 35.0% |
| ! | CCATGTACAGTGTTATTACT+TGG | - | chr5.3:2009430-2009449 | None:intergenic | 35.0% |
| ! | CGAGGGTATATTTCAAATGT+TGG | - | chr5.3:2008488-2008507 | None:intergenic | 35.0% |
| ! | GAACAATTTTCATTCTCTGC+TGG | - | chr5.3:2009622-2009641 | None:intergenic | 35.0% |
| ! | GGAGAATTTTGCTCCATAAT+AGG | - | chr5.3:2008650-2008669 | None:intergenic | 35.0% |
| ! | GTGGCTTGTATAACTATAAG+TGG | + | chr5.3:2010801-2010820 | MS.gene40499:CDS | 35.0% |
| ! | TTCTGAATTTTCTGCAGATC+AGG | + | chr5.3:2008574-2008593 | MS.gene40499:intron | 35.0% |
| ! | TTTCACTGAGAGAGATTTTC+TGG | - | chr5.3:2010978-2010997 | None:intergenic | 35.0% |
| ! | TTTTTCTATAGGATTCCTGC+TGG | - | chr5.3:2008780-2008799 | None:intergenic | 35.0% |
| !!! | ACCTACTTTTTTGAACATCG+AGG | - | chr5.3:2008506-2008525 | None:intergenic | 35.0% |
| !!! | CCTACTTTTTTGAACATCGA+GGG | - | chr5.3:2008505-2008524 | None:intergenic | 35.0% |
| !!! | TTTTGTGATGGATTCCATCA+TGG | - | chr5.3:2010299-2010318 | None:intergenic | 35.0% |
| !!! | TTTTTTCCACAGGTAAGAAG+CGG | + | chr5.3:2009041-2009060 | MS.gene40499:CDS | 35.0% |
| AAGATTTCACATGTGCCAGA+GGG | + | chr5.3:2010477-2010496 | MS.gene40499:CDS | 40.0% | |
| AAGCAGAGAATATCAGTCAC+CGG | + | chr5.3:2009755-2009774 | MS.gene40499:CDS | 40.0% | |
| AAGTGAGCTAGAAGATCTTC+AGG | + | chr5.3:2010071-2010090 | MS.gene40499:CDS | 40.0% | |
| AATCCTGAGCCGAAAAATAC+AGG | + | chr5.3:2009307-2009326 | MS.gene40499:CDS | 40.0% | |
| ACAGTTAGTGTGTAGCAGAT+GGG | + | chr5.3:2010683-2010702 | MS.gene40499:intron | 40.0% | |
| ACTGCATCAAAAATTCCCTC+TGG | - | chr5.3:2010495-2010514 | None:intergenic | 40.0% | |
| AGCAAAATTCTCCATCAAGG+AGG | + | chr5.3:2008657-2008676 | MS.gene40499:CDS | 40.0% | |
| AGGAAGAAATCATGGAATGG+TGG | + | chr5.3:2011457-2011476 | MS.gene40499:intron | 40.0% | |
| AGGCTTGCATTACTTACTTC+AGG | - | chr5.3:2010548-2010567 | None:intergenic | 40.0% | |
| ATCCGCATGGCAAAAAACAA+AGG | + | chr5.3:2008923-2008942 | MS.gene40499:CDS | 40.0% | |
| ATCTCTCTCAGTGAAAGTAG+GGG | + | chr5.3:2010982-2011001 | MS.gene40499:CDS | 40.0% | |
| ATGTAACAGCAAAATCCGCA+TGG | + | chr5.3:2008910-2008929 | MS.gene40499:CDS | 40.0% | |
| ATTCACAAACTCGGAGCAAA+TGG | + | chr5.3:2009906-2009925 | MS.gene40499:CDS | 40.0% | |
| ATTTGCATCCCCATCTGATA+AGG | - | chr5.3:2008960-2008979 | None:intergenic | 40.0% | |
| CAGAAACTGGATTTCAAGCA+TGG | + | chr5.3:2009165-2009184 | MS.gene40499:CDS | 40.0% | |
| CATGGCAAAAAACAAAGGCA+AGG | + | chr5.3:2008928-2008947 | MS.gene40499:CDS | 40.0% | |
| CCCTCGATGTTCAAAAAAGT+AGG | + | chr5.3:2008502-2008521 | MS.gene40499:intron | 40.0% | |
| CTAATTTAACATCCTCCAGC+AGG | + | chr5.3:2008762-2008781 | MS.gene40499:CDS | 40.0% | |
| CTTGGCGTTTATAACGTCAT+TGG | - | chr5.3:2010352-2010371 | None:intergenic | 40.0% | |
| GACCAAACTAATTCGGAAAG+AGG | - | chr5.3:2008330-2008349 | None:intergenic | 40.0% | |
| GAGCCTGTAACTGAATACAA+AGG | + | chr5.3:2008722-2008741 | MS.gene40499:CDS | 40.0% | |
| GAGCCTTTGTATTCAGTTAC+AGG | - | chr5.3:2008728-2008747 | None:intergenic | 40.0% | |
| GGAAAAGTCCTTATCAGATG+GGG | + | chr5.3:2008949-2008968 | MS.gene40499:CDS | 40.0% | |
| GGATTTCAAGCATGGTGAAA+GGG | + | chr5.3:2009173-2009192 | MS.gene40499:CDS | 40.0% | |
| GGTTCAATATTAGGCTGTGA+CGG | - | chr5.3:2009559-2009578 | None:intergenic | 40.0% | |
| GTAACTGAATACAAAGGCTC+TGG | + | chr5.3:2008728-2008747 | MS.gene40499:CDS | 40.0% | |
| GTCAAAACCTTTGTCCATGA+AGG | + | chr5.3:2010216-2010235 | MS.gene40499:CDS | 40.0% | |
| TAATTCGGAAAGAGGATCAG+TGG | - | chr5.3:2008322-2008341 | None:intergenic | 40.0% | |
| TACAGTTAGTGTGTAGCAGA+TGG | + | chr5.3:2010682-2010701 | MS.gene40499:intron | 40.0% | |
| TAGTACCGCCAGATAAAATC+CGG | - | chr5.3:2010275-2010294 | None:intergenic | 40.0% | |
| TATAACATCTCCGTCGAGAT+TGG | + | chr5.3:2010446-2010465 | MS.gene40499:CDS | 40.0% | |
| TCTGCAGAAAATTCAGAACG+AGG | - | chr5.3:2008572-2008591 | None:intergenic | 40.0% | |
| TGGAAAAATGACTCATGTGC+AGG | + | chr5.3:2008258-2008277 | MS.gene40499:CDS | 40.0% | |
| TGGAGCAAAATTCTCCATCA+AGG | + | chr5.3:2008654-2008673 | MS.gene40499:CDS | 40.0% | |
| TGGATTTCAAGCATGGTGAA+AGG | + | chr5.3:2009172-2009191 | MS.gene40499:CDS | 40.0% | |
| TTGAAAGCTGTAACAGTGCT+AGG | + | chr5.3:2009017-2009036 | MS.gene40499:CDS | 40.0% | |
| ! | AATGTTTTCAGCTCAACCAC+TGG | + | chr5.3:2010145-2010164 | MS.gene40499:CDS | 40.0% |
| ! | ATGTTTTCAGCTCAACCACT+GGG | + | chr5.3:2010146-2010165 | MS.gene40499:CDS | 40.0% |
| ! | GCAATTGATCTCTGGAAAAC+AGG | - | chr5.3:2009473-2009492 | None:intergenic | 40.0% |
| ! | TCCTCAAAACCACTGGATTT+TGG | - | chr5.3:2009820-2009839 | None:intergenic | 40.0% |
| ! | TTCTTTTCAGCCAATCTCGA+CGG | - | chr5.3:2010459-2010478 | None:intergenic | 40.0% |
| !! | AATCCTGTATTTTTCGGCTC+AGG | - | chr5.3:2009313-2009332 | None:intergenic | 40.0% |
| !! | AGTTCTCTTTTTCGCGATGT+TGG | + | chr5.3:2008405-2008424 | MS.gene40499:CDS | 40.0% |
| !! | CTCAACAGCAGTTGATGATT+GGG | + | chr5.3:2009071-2009090 | MS.gene40499:CDS | 40.0% |
| !! | GCTATTTTCCCCTTTTGTAC+AGG | + | chr5.3:2011437-2011456 | MS.gene40499:intron | 40.0% |
| !! | GTACATTCTGGTTTGTCTGT+CGG | - | chr5.3:2009976-2009995 | None:intergenic | 40.0% |
| !! | TCCAAAATCCAGTGGTTTTG+AGG | + | chr5.3:2009816-2009835 | MS.gene40499:CDS | 40.0% |
| !! | TCTCAACAGCAGTTGATGAT+TGG | + | chr5.3:2009070-2009089 | MS.gene40499:CDS | 40.0% |
| !!! | AAGGTTTTGACTTCCGATTC+AGG | - | chr5.3:2010207-2010226 | None:intergenic | 40.0% |
| !!! | AGTCATTTTTCCAATCGCAC+TGG | - | chr5.3:2008251-2008270 | None:intergenic | 40.0% |
| !!! | AGTGCTAGGTTTTTTTCCAC+AGG | + | chr5.3:2009031-2009050 | MS.gene40499:CDS | 40.0% |
| !!! | ATGCGGATTTTGCTGTTACA+TGG | - | chr5.3:2008911-2008930 | None:intergenic | 40.0% |
| !!! | TGCCTTTGTTTTTTGCCATG+CGG | - | chr5.3:2008928-2008947 | None:intergenic | 40.0% |
| AACGACACTACCTTGCGTTA+AGG | + | chr5.3:2008865-2008884 | MS.gene40499:CDS | 45.0% | |
| AAGACAATCCAGGGAGTCTA+TGG | + | chr5.3:2009779-2009798 | MS.gene40499:CDS | 45.0% | |
| ACAGGAAGAACCTTAACGCA+AGG | - | chr5.3:2008878-2008897 | None:intergenic | 45.0% | |
| AGTAGGGGGAATCAAGTGTA+TGG | + | chr5.3:2010997-2011016 | MS.gene40499:CDS | 45.0% | |
| ATCCTCGCGAAGATGATGAA+AGG | - | chr5.3:2009888-2009907 | None:intergenic | 45.0% | |
| CTCATCTTCCTCAAAACCAC+TGG | - | chr5.3:2009827-2009846 | None:intergenic | 45.0% | |
| CTCGACGGAGATGTTATACT+AGG | - | chr5.3:2010444-2010463 | None:intergenic | 45.0% | |
| CTGTCGGCATGATATGTTTG+AGG | - | chr5.3:2009960-2009979 | None:intergenic | 45.0% | |
| CTTGTGCCTTAGTAAGGACA+AGG | + | chr5.3:2009645-2009664 | MS.gene40499:CDS | 45.0% | |
| GAAGATTTCACATGTGCCAG+AGG | + | chr5.3:2010476-2010495 | MS.gene40499:CDS | 45.0% | |
| TCTCTCTCAGTGAAAGTAGG+GGG | + | chr5.3:2010983-2011002 | MS.gene40499:CDS | 45.0% | |
| TCTGCTTTCTTTCTCTCGGA+TGG | - | chr5.3:2009742-2009761 | None:intergenic | 45.0% | |
| TTCGCGAGGATTCACAAACT+CGG | + | chr5.3:2009897-2009916 | MS.gene40499:CDS | 45.0% | |
| TTCTATAGGATTCCTGCTGG+AGG | - | chr5.3:2008777-2008796 | None:intergenic | 45.0% | |
| ! | AAGGCAGACCGGATTTTATC+TGG | + | chr5.3:2010264-2010283 | MS.gene40499:CDS | 45.0% |
| ! | CGATTTGCTCCAAAATCCAG+TGG | + | chr5.3:2009808-2009827 | MS.gene40499:CDS | 45.0% |
| !! | CTGCAGATCAGGTTGATCAA+AGG | + | chr5.3:2008585-2008604 | MS.gene40499:intron | 45.0% |
| AAGACCGGTGCAGATTGACA+AGG | + | chr5.3:2010245-2010264 | MS.gene40499:CDS | 50.0% | |
| AGCAGATGGGTAACTGCTCA+TGG | + | chr5.3:2010696-2010715 | MS.gene40499:intron | 50.0% | |
| AGTCACCGGAAAGACAATCC+AGG | + | chr5.3:2009769-2009788 | MS.gene40499:CDS | 50.0% | |
| ATAACGCTGACCAGTGCGAT+TGG | + | chr5.3:2008238-2008257 | MS.gene40499:CDS | 50.0% | |
| CAGCTGAGCAATCACTGAGT+TGG | - | chr5.3:2010044-2010063 | None:intergenic | 50.0% | |
| CGAGTTATCCATAGACTCCC+TGG | - | chr5.3:2009790-2009809 | None:intergenic | 50.0% | |
| CTCAACACCTGCTTCTGAGT+TGG | - | chr5.3:2011487-2011506 | None:intergenic | 50.0% | |
| CTTACTTCAGGATGTCGGTG+CGG | - | chr5.3:2010536-2010555 | None:intergenic | 50.0% | |
| GACCTTTCATCATCTTCGCG+AGG | + | chr5.3:2009883-2009902 | MS.gene40499:CDS | 50.0% | |
| GACTCCCTGGATTGTCTTTC+CGG | - | chr5.3:2009777-2009796 | None:intergenic | 50.0% | |
| GCTTCAGAGAGATATGACGC+TGG | + | chr5.3:2009532-2009551 | MS.gene40499:CDS | 50.0% | |
| GGATCATTCTCGCAACTCGA+GGG | + | chr5.3:2010717-2010736 | MS.gene40499:CDS | 50.0% | |
| GTCACCGGAAAGACAATCCA+GGG | + | chr5.3:2009770-2009789 | MS.gene40499:CDS | 50.0% | |
| TCAAGAAGGAGAAGGTGACG+AGG | + | chr5.3:2009396-2009415 | MS.gene40499:CDS | 50.0% | |
| TCTGCCTTGTCAATCTGCAC+CGG | - | chr5.3:2010252-2010271 | None:intergenic | 50.0% | |
| TCTGGCGGTACTATCCATGA+TGG | + | chr5.3:2010282-2010301 | MS.gene40499:CDS | 50.0% | |
| TGCAGATTGACAAGGCAGAC+CGG | + | chr5.3:2010253-2010272 | MS.gene40499:CDS | 50.0% | |
| TGCAGTCCCTTCATGGACAA+AGG | - | chr5.3:2010226-2010245 | None:intergenic | 50.0% | |
| TGGAACATGAAACTGCCCAG+TGG | - | chr5.3:2010164-2010183 | None:intergenic | 50.0% | |
| TGGAGGAACTGGTTACCATG+TGG | + | chr5.3:2010782-2010801 | MS.gene40499:CDS | 50.0% | |
| TGGATCATTCTCGCAACTCG+AGG | + | chr5.3:2010716-2010735 | MS.gene40499:CDS | 50.0% | |
| TTACTTCAGGATGTCGGTGC+GGG | - | chr5.3:2010535-2010554 | None:intergenic | 50.0% | |
| ! | GCAGACCGGATTTTATCTGG+CGG | + | chr5.3:2010267-2010286 | MS.gene40499:CDS | 50.0% |
| ! | GTTATGCCGCTTCTTACCTG+TGG | - | chr5.3:2009050-2009069 | None:intergenic | 50.0% |
| !!! | AGGGTTTTTTCTTGCGCCTG+CGG | + | chr5.3:2010736-2010755 | MS.gene40499:CDS | 50.0% |
| AAGTGGGAAGAAGGGCTTGG+AGG | + | chr5.3:2010765-2010784 | MS.gene40499:CDS | 55.0% | |
| CCATGAAGGGACTGCAAGAC+CGG | + | chr5.3:2010230-2010249 | MS.gene40499:CDS | 55.0% | |
| CTTTCTCTCGGATGGTGCGT+TGG | - | chr5.3:2009734-2009753 | None:intergenic | 55.0% | |
| GAAGAAGGGCTTGGAGGAAC+TGG | + | chr5.3:2010771-2010790 | MS.gene40499:CDS | 55.0% | |
| GGCTTGGGAAGTGGGAAGAA+GGG | + | chr5.3:2010757-2010776 | MS.gene40499:CDS | 55.0% | |
| TCAAGGAGGCCTCCCAATGA+AGG | + | chr5.3:2008671-2008690 | MS.gene40499:CDS | 55.0% | |
| TCATTGGGAGGCCTCCTTGA+TGG | - | chr5.3:2008671-2008690 | None:intergenic | 55.0% | |
| TGGTCTGCCAACTCAGAAGC+AGG | + | chr5.3:2011477-2011496 | MS.gene40499:CDS | 55.0% | |
| ! | TTTTCTTGCGCCTGCGGCTT+GGG | + | chr5.3:2010742-2010761 | MS.gene40499:CDS | 55.0% |
| ! | TTTTTCTTGCGCCTGCGGCT+TGG | + | chr5.3:2010741-2010760 | MS.gene40499:CDS | 55.0% |
| !! | TACAAAGGCTCTGGTGCTGC+AGG | + | chr5.3:2008737-2008756 | MS.gene40499:CDS | 55.0% |
| CCGGTCTTGCAGTCCCTTCA+TGG | - | chr5.3:2010233-2010252 | None:intergenic | 60.0% | |
| GGGAAGTGGGAAGAAGGGCT+TGG | + | chr5.3:2010762-2010781 | MS.gene40499:CDS | 60.0% | |
| ! | CGGCTTGGGAAGTGGGAAGA+AGG | + | chr5.3:2010756-2010775 | MS.gene40499:CDS | 60.0% |
| CTTCCCACTTCCCAAGCCGC+AGG | - | chr5.3:2010755-2010774 | None:intergenic | 65.0% | |
| ! | GCGCCTGCGGCTTGGGAAGT+GGG | + | chr5.3:2010749-2010768 | MS.gene40499:CDS | 70.0% |
| ! | TGCGCCTGCGGCTTGGGAAG+TGG | + | chr5.3:2010748-2010767 | MS.gene40499:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 2008180 | 2011566 | 2008180 | ID=MS.gene40499 |
| chr5.3 | mRNA | 2008180 | 2011566 | 2008180 | ID=MS.gene40499.t1;Parent=MS.gene40499 |
| chr5.3 | exon | 2008180 | 2008447 | 2008180 | ID=MS.gene40499.t1.exon1;Parent=MS.gene40499.t1 |
| chr5.3 | CDS | 2008180 | 2008447 | 2008180 | ID=cds.MS.gene40499.t1;Parent=MS.gene40499.t1 |
| chr5.3 | exon | 2008591 | 2010550 | 2008591 | ID=MS.gene40499.t1.exon2;Parent=MS.gene40499.t1 |
| chr5.3 | CDS | 2008591 | 2010550 | 2008591 | ID=cds.MS.gene40499.t1;Parent=MS.gene40499.t1 |
| chr5.3 | exon | 2010701 | 2010822 | 2010701 | ID=MS.gene40499.t1.exon3;Parent=MS.gene40499.t1 |
| chr5.3 | CDS | 2010701 | 2010822 | 2010701 | ID=cds.MS.gene40499.t1;Parent=MS.gene40499.t1 |
| chr5.3 | exon | 2010945 | 2011057 | 2010945 | ID=MS.gene40499.t1.exon4;Parent=MS.gene40499.t1 |
| chr5.3 | CDS | 2010945 | 2011057 | 2010945 | ID=cds.MS.gene40499.t1;Parent=MS.gene40499.t1 |
| chr5.3 | exon | 2011459 | 2011566 | 2011459 | ID=MS.gene40499.t1.exon5;Parent=MS.gene40499.t1 |
| chr5.3 | CDS | 2011459 | 2011566 | 2011459 | ID=cds.MS.gene40499.t1;Parent=MS.gene40499.t1 |
| Gene Sequence |
| Protein sequence |
